<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:52:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392782" ref_strand="+" ref_description="SGN-E392782 [TUS-36-J20]">
      <seq>ttctctttaactaccttttactcaaatccttgaatattaaaaggacaaaaataaaaaaaattcaaagtatgggacgttcaccttgttgtgaaaaagcacatacaaataaaggagcatggactaaagaagaagaccaacgcctcatcaattatatacgtgctcatggggaaggttgctggcgttctcttcctaaagctgcaggattgtcaagatgtggaaagagttgcagattgatatggataaattatttaaggcctgatctcaaaagagggaattttacagaagaagaagatgaattgataatcaaacttcatagtttgcttggaaacaaatggtcagttatagccggaagattacctggaagaacggataacgaaatcaagaactattggaatacacatattaaacgaaaactcattagtcgtggcattgatcctcaaactcaccgtccactcaacaacaacgccactaactcccacaccaccaccaatatcaccaccgcagtcacaaccaaaaacatcaacttggatttcacaaacgttgaccaaaaacaacccaatattatgattgccccgtcatcgtcataatgatgaaacaaaatgcaacatgggtacaaactgaaggaaacaaagccactagaaaattattattccaaaaaataccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10053" stop="12080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10334" g_stop="10534" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10535" i_stop="10765" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10766" g_stop="10895" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="331" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10896" i_stop="11451" i_length="556">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11452" g_stop="11780" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="665" r_length="334" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E392782" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10334" e_stop="10534"/>
          <exon e_start="10766" e_stop="10895"/>
          <exon e_start="11452" e_stop="11780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAGGTATTCATTGTCGAAAAATTATATTGTATATATATTAAAAAAAATATTTTGAAATATCTCGCTCGTTATACATATATTGAAAAATTAAACTTATTAAATTTAAATTAAGAAATTAAGAGGATCTAATAATTTTTGGATCTACTGCCACAAAAAAAAAAGATTATGGATGTGGATAAAAGATTTTGAGACTTTTTTTTGTAAAATATTGAATTATTTTTAAAAATATTTTAGGATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAAGTATGTATATATGATCTTTGTTATTTTAATTTATTTTTTTGGTTTTACTTATTATAAGTTATATATTCCTAGTATCATAAAATGTGTGAAAATTGGAGTAGAAAGTCAAAATTGTTTTCTTTTTTGTTTGGCTAATTTGGGACCACATTAAGAAGTTATAAAAACAAGATCTAAATTGTTCTAAGAGAAAAAAGTGGTTATAGTAGTAAATTTTTACAAGTGGGAAAGACTTCTCTGTTTCTTGAAATACCAAACCTATAAAATCTATAGATATCCAAAGTCCTTTTCAATTATTAAAACAAAAATTAAATTAAAGCTTGATTTTGAACTAATTTGTGATTGGCAAAAAGGTTGAAAGTTGTTAAATCAGGTCAAAATTCACAAATAGTCATTTTTCAGTTATTGCTATTTCTAGAGTCAATTTTTTTAAAAAAAAAAATGGGTTAAAAGCTTCTTACAAAACAAGTATTTGAAAACTTTAGCTCAAAACAAAATGTAACTTACTTATATTTCCTTTTTTTTATTTTTATATTTTCTAATAATATTTTCATTGCAGATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACGTCATCGTCAT-ATGATGAAACAAAATGCAACAGTGGTAC-AACTG-AGGAAACAAAGCCACTAG-AAATTATTATTCC-AAAAATACCCT</genome_strand>
        <mrna_strand>TTCTCTTTAACTACCTTTTACTCAAATCCTTGAATATTAAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAG.......................................................................................................................................................................................................................................GATTGTCAAGATGTGGAAAGAGTTGCAGATTGATATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCCCGTCATCGTCATAATGATGAAACAAAATGCAACATGGGTACAAACTGAAGGAAACAAAGCCACTAGAAAATTATTATTCCAAAAAATACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396915" ref_strand="+" ref_description="SGN-E396915 [TUS-44-B11]">
      <seq>ttctcttttagtaccaaaaactcaaatccttgaatactcaaaggacaaaaataaaaaaaattcaaagtatgggacgttcaccttgttgtgaaaaagcacatacaaataaaggagcatggactaaagaagaagaccaacgcctcatcaattatatacgtgctcatggggaaggttgctggcgttctcttcctaaagctgcaggattgtcaagatgtggaaagagttgcaaattgagatggataaattatttaaggcctgatctcaaaagagggaattttacagaaaaagaagatgaattgataatcaaacttcatagtttgcttggaaacaaatggtcagttatagccggaagattacctggaagaacagataacgaaatcaagaactattggaatacacatattaaacgaaaactcattagtcgtggcattgatcctcaaactcaccgtccactcaacaacaacaccactaactcccacaccaccaccaatatcaccaccgcagtcacaaccaaaaacatcaacttggatttcacaaacgttgaccaaaaacaacccaatattatgattgccacgtcatcgtcatatgatgaaacaaaatgcaacagtggtacaactgaggaaacaaagcccctagaaattattaatccaaaaataccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10034" stop="12080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10334" g_stop="10534" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10535" i_stop="10765" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10766" g_stop="10895" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="331" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10896" i_stop="11451" i_length="556">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11452" g_stop="11780" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="660" r_length="329" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E396915" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10334" e_stop="10534"/>
          <exon e_start="10766" e_stop="10895"/>
          <exon e_start="11452" e_stop="11780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAGGTATTCATTGTCGAAAAATTATATTGTATATATATTAAAAAAAATATTTTGAAATATCTCGCTCGTTATACATATATTGAAAAATTAAACTTATTAAATTTAAATTAAGAAATTAAGAGGATCTAATAATTTTTGGATCTACTGCCACAAAAAAAAAAGATTATGGATGTGGATAAAAGATTTTGAGACTTTTTTTTGTAAAATATTGAATTATTTTTAAAAATATTTTAGGATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAAGTATGTATATATGATCTTTGTTATTTTAATTTATTTTTTTGGTTTTACTTATTATAAGTTATATATTCCTAGTATCATAAAATGTGTGAAAATTGGAGTAGAAAGTCAAAATTGTTTTCTTTTTTGTTTGGCTAATTTGGGACCACATTAAGAAGTTATAAAAACAAGATCTAAATTGTTCTAAGAGAAAAAAGTGGTTATAGTAGTAAATTTTTACAAGTGGGAAAGACTTCTCTGTTTCTTGAAATACCAAACCTATAAAATCTATAGATATCCAAAGTCCTTTTCAATTATTAAAACAAAAATTAAATTAAAGCTTGATTTTGAACTAATTTGTGATTGGCAAAAAGGTTGAAAGTTGTTAAATCAGGTCAAAATTCACAAATAGTCATTTTTCAGTTATTGCTATTTCTAGAGTCAATTTTTTTAAAAAAAAAAATGGGTTAAAAGCTTCTTACAAAACAAGTATTTGAAAACTTTAGCTCAAAACAAAATGTAACTTACTTATATTTCCTTTTTTTTATTTTTATATTTTCTAATAATATTTTCATTGCAGATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACGTCATCGTCATATGATGAAACAAAATGCAACAGTGGTACAACTGAGGAAACAAAGCCACTAGAAATTATTATTCCAAAAATACCCT</genome_strand>
        <mrna_strand>TTCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAG.......................................................................................................................................................................................................................................GATTGTCAAGATGTGGAAAGAGTTGCAAATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAAAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACAGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACACCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACGTCATCGTCATATGATGAAACAAAATGCAACAGTGGTACAACTGAGGAAACAAAGCCCCTAGAAATTATTAATCCAAAAATACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392693" ref_strand="+" ref_description="SGN-E392693 [TUS-36-J19]">
      <seq>ttctcttttagtaccaaaaactcaaatccttgaatactcaaaggacaaaaataaaaaaaattcaaagtatgggacgttcaccttgttgtgaaaaagcacatacaaataaaggagcatggactaaagaagaagaccaacgcctcatcaattatatacgtgctcatggggaaggttgctggcgttctcttcctaaagctgcaggattgtcaagatgtggaaagagttgcagattgagatggataaattatttaaggcctgatctcaaaagagggaattttacagaagaagaagatgaattgataatcaaacttcatagtttgcttggaaacaaatggtcagttatagccggaagattacctggaagaacggataacgaaatcaagaactattggaatacacatattaaacgaaaactcattagtcgtggcattgatcctcaaactcaccgtccactcaacaacaacgccactaactcccacaccaccaccaatatcaccaccgcagtcacacccaaaaaacatcaacttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10034" stop="11950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10334" g_stop="10534" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10535" i_stop="10765" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10766" g_stop="10895" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="331" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10896" i_stop="11451" i_length="556">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11452" g_stop="11650" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="531" r_length="200" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E392693" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10334" e_stop="10534"/>
          <exon e_start="10766" e_stop="10895"/>
          <exon e_start="11452" e_stop="11650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAGGTATTCATTGTCGAAAAATTATATTGTATATATATTAAAAAAAATATTTTGAAATATCTCGCTCGTTATACATATATTGAAAAATTAAACTTATTAAATTTAAATTAAGAAATTAAGAGGATCTAATAATTTTTGGATCTACTGCCACAAAAAAAAAAGATTATGGATGTGGATAAAAGATTTTGAGACTTTTTTTTGTAAAATATTGAATTATTTTTAAAAATATTTTAGGATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAAGTATGTATATATGATCTTTGTTATTTTAATTTATTTTTTTGGTTTTACTTATTATAAGTTATATATTCCTAGTATCATAAAATGTGTGAAAATTGGAGTAGAAAGTCAAAATTGTTTTCTTTTTTGTTTGGCTAATTTGGGACCACATTAAGAAGTTATAAAAACAAGATCTAAATTGTTCTAAGAGAAAAAAGTGGTTATAGTAGTAAATTTTTACAAGTGGGAAAGACTTCTCTGTTTCTTGAAATACCAAACCTATAAAATCTATAGATATCCAAAGTCCTTTTCAATTATTAAAACAAAAATTAAATTAAAGCTTGATTTTGAACTAATTTGTGATTGGCAAAAAGGTTGAAAGTTGTTAAATCAGGTCAAAATTCACAAATAGTCATTTTTCAGTTATTGCTATTTCTAGAGTCAATTTTTTTAAAAAAAAAAATGGGTTAAAAGCTTCTTACAAAACAAGTATTTGAAAACTTTAGCTCAAAACAAAATGTAACTTACTTATATTTCCTTTTTTTTATTTTTATATTTTCTAATAATATTTTCATTGCAGATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACC-AAAAACATCAACTTGGAT</genome_strand>
        <mrna_strand>TTCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAG.......................................................................................................................................................................................................................................GATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACACCCAAAAAACATCAACTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244512" ref_strand="+" ref_description="SGN-E244512 [cLED-38-I9]">
      <seq>tctcttttagtaccaaaaactcaaatccttgaatactcaaaggacaaaaataaaaaaaattcaaagtatgggacgttcaccttgttgtgaaaaagcacatacaaataaaggagcatggactaaagaagaagaccaacgcctcatcaattatatacgtgctcatggggaaggttgctggcgttctcttcctaaagctgcaggattgtcaagatgtggaaagagttgcagattgagatggataaattatttaaggcctgatctcaaaagagggaattttacagaagaagaagatgaattgataatcaaacttcatagtttgcttggaaacaaatggtcagttatagccggaagattacctggaagaacggataacgaaatcaagaactattggaatacacatattaaacgaaaactcattagtcgtggcattgatcctcaaactcaccgtccactcaacaacaacgccactaactcccacaccaccaccaatatcaccaccgcagtcacaaccaaaaacatcaacttggatttcacaaacgttgaccaaaaacaacccaatattatgattgccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10035" stop="11995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10335" g_stop="10534" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10535" i_stop="10765" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10766" g_stop="10895" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="330" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10896" i_stop="11451" i_length="556">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11452" g_stop="11695" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="574" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E244512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10335" e_stop="10534"/>
          <exon e_start="10766" e_stop="10895"/>
          <exon e_start="11452" e_stop="11695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAGGTATTCATTGTCGAAAAATTATATTGTATATATATTAAAAAAAATATTTTGAAATATCTCGCTCGTTATACATATATTGAAAAATTAAACTTATTAAATTTAAATTAAGAAATTAAGAGGATCTAATAATTTTTGGATCTACTGCCACAAAAAAAAAAGATTATGGATGTGGATAAAAGATTTTGAGACTTTTTTTTGTAAAATATTGAATTATTTTTAAAAATATTTTAGGATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAAGTATGTATATATGATCTTTGTTATTTTAATTTATTTTTTTGGTTTTACTTATTATAAGTTATATATTCCTAGTATCATAAAATGTGTGAAAATTGGAGTAGAAAGTCAAAATTGTTTTCTTTTTTGTTTGGCTAATTTGGGACCACATTAAGAAGTTATAAAAACAAGATCTAAATTGTTCTAAGAGAAAAAAGTGGTTATAGTAGTAAATTTTTACAAGTGGGAAAGACTTCTCTGTTTCTTGAAATACCAAACCTATAAAATCTATAGATATCCAAAGTCCTTTTCAATTATTAAAACAAAAATTAAATTAAAGCTTGATTTTGAACTAATTTGTGATTGGCAAAAAGGTTGAAAGTTGTTAAATCAGGTCAAAATTCACAAATAGTCATTTTTCAGTTATTGCTATTTCTAGAGTCAATTTTTTTAAAAAAAAAAATGGGTTAAAAGCTTCTTACAAAACAAGTATTTGAAAACTTTAGCTCAAAACAAAATGTAACTTACTTATATTTCCTTTTTTTTATTTTTATATTTTCTAATAATATTTTCATTGCAGATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACG</genome_strand>
        <mrna_strand>TCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAG.......................................................................................................................................................................................................................................GATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232886" ref_strand="+" ref_description="SGN-E232886 [cLED-8-M18]">
      <seq>tctcttttagtaccaaaaactcaaatccttgaatactcaaaggacaaaaataaaaaaaattcaaagtatgggacgttcaccttgttgtgaaaaagcacatacaaataaaggagcatggactaaagaagaagaccaacgcctcatcaattatatacgtgctcatggggaaggttgctggcgttctcttcctaaagctgcaggattgtcaagatgtggaaagagttgcagattgagatggataaattatttaaggcctgatctcaaaagagggaattttacagaagaagaagatgaattgataatcaaacttcatagtttgcttggaaacaaatggtcagttatagccggaagattacctggaagaacggataacgaaatcaagaactattggaatacacatattaaacgaaaactcattagtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10035" stop="11845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10335" g_stop="10534" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10535" i_stop="10765" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10766" g_stop="10895" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="330" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10896" i_stop="11451" i_length="556">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11452" g_stop="11545" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="424" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E232886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10335" e_stop="10534"/>
          <exon e_start="10766" e_stop="10895"/>
          <exon e_start="11452" e_stop="11545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAGGTATTCATTGTCGAAAAATTATATTGTATATATATTAAAAAAAATATTTTGAAATATCTCGCTCGTTATACATATATTGAAAAATTAAACTTATTAAATTTAAATTAAGAAATTAAGAGGATCTAATAATTTTTGGATCTACTGCCACAAAAAAAAAAGATTATGGATGTGGATAAAAGATTTTGAGACTTTTTTTTGTAAAATATTGAATTATTTTTAAAAATATTTTAGGATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAAGTATGTATATATGATCTTTGTTATTTTAATTTATTTTTTTGGTTTTACTTATTATAAGTTATATATTCCTAGTATCATAAAATGTGTGAAAATTGGAGTAGAAAGTCAAAATTGTTTTCTTTTTTGTTTGGCTAATTTGGGACCACATTAAGAAGTTATAAAAACAAGATCTAAATTGTTCTAAGAGAAAAAAGTGGTTATAGTAGTAAATTTTTACAAGTGGGAAAGACTTCTCTGTTTCTTGAAATACCAAACCTATAAAATCTATAGATATCCAAAGTCCTTTTCAATTATTAAAACAAAAATTAAATTAAAGCTTGATTTTGAACTAATTTGTGATTGGCAAAAAGGTTGAAAGTTGTTAAATCAGGTCAAAATTCACAAATAGTCATTTTTCAGTTATTGCTATTTCTAGAGTCAATTTTTTTAAAAAAAAAAATGGGTTAAAAGCTTCTTACAAAACAAGTATTTGAAAACTTTAGCTCAAAACAAAATGTAACTTACTTATATTTCCTTTTTTTTATTTTTATATTTTCTAATAATATTTTCATTGCAGATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGT</genome_strand>
        <mrna_strand>TCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAG.......................................................................................................................................................................................................................................GATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211663" ref_strand="+" ref_description="SGN-E211663 [cLEC-67-D24]">
      <seq>aattatatacgtgctcatggggaaggttgctggcgttctcttcctaaagctgcaggattgtcaagatgtggaaagagttgcagattgagatggataaattatttaaggcctgatctcaaaagagggaattttacagaagaagaagatgaattgataatcaaacttcatagtttgcttggaaacaaatggtcagttatagccggaagattacctggaagaacggataacgaaatcaagaactattggaatacacatattaaacgaaaactcattagtcgtggcattgatcctcaaactcaccgtccactcaacaacaacgccactaactcccacaccaccaccaatatcaccaccgcagtcacaaccaaaaacatcaacttggatttcacaaacgttgaccaaaaacaacccaatattatgattgccacgtcatcgtcatatgatgaaacaaaatgcaacagtggtacaactgaggaaacaaagccactagaaattattattccaaaaataccctcacaagttatgattaatcttgaactttcaattgggttgccgttacatactgatcatatttcttcaccagagtcaacggcctcatacaacttcttgaccaccgtagcaccgccgccaactgcggcggtaccggcggcggagatgatggcgaagactgtttgtttgtgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10180" stop="12251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10480" g_stop="10534" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10535" i_stop="10765" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10766" g_stop="10895" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="185" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10896" i_stop="11451" i_length="556">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11452" g_stop="11949" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="683" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E211663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10480" e_stop="10534"/>
          <exon e_start="10766" e_stop="10895"/>
          <exon e_start="11452" e_stop="11949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAGGTATTCATTGTCGAAAAATTATATTGTATATATATTAAAAAAAATATTTTGAAATATCTCGCTCGTTATACATATATTGAAAAATTAAACTTATTAAATTTAAATTAAGAAATTAAGAGGATCTAATAATTTTTGGATCTACTGCCACAAAAAAAAAAGATTATGGATGTGGATAAAAGATTTTGAGACTTTTTTTTGTAAAATATTGAATTATTTTTAAAAATATTTTAGGATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAAGTATGTATATATGATCTTTGTTATTTTAATTTATTTTTTTGGTTTTACTTATTATAAGTTATATATTCCTAGTATCATAAAATGTGTGAAAATTGGAGTAGAAAGTCAAAATTGTTTTCTTTTTTGTTTGGCTAATTTGGGACCACATTAAGAAGTTATAAAAACAAGATCTAAATTGTTCTAAGAGAAAAAAGTGGTTATAGTAGTAAATTTTTACAAGTGGGAAAGACTTCTCTGTTTCTTGAAATACCAAACCTATAAAATCTATAGATATCCAAAGTCCTTTTCAATTATTAAAACAAAAATTAAATTAAAGCTTGATTTTGAACTAATTTGTGATTGGCAAAAAGGTTGAAAGTTGTTAAATCAGGTCAAAATTCACAAATAGTCATTTTTCAGTTATTGCTATTTCTAGAGTCAATTTTTTTAAAAAAAAAAATGGGTTAAAAGCTTCTTACAAAACAAGTATTTGAAAACTTTAGCTCAAAACAAAATGTAACTTACTTATATTTCCTTTTTTTTATTTTTATATTTTCTAATAATATTTTCATTGCAGATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACGTCATCGTCATATGATGAAACAAAATGCAACAGTGGTACAACTGAGGAAACAAAGCCACTAGAAATTATTATTCCAAAAATACCCTCACAAGTTATGATTAATCTTGAACTTTCAATTGGGTTGCCGTTACATACTGATCATATTTCTTCACCAGAGTCAACGGCCTCATACAACTTCTTGACCACCGTAGCACCGCCGCCAACTGCGGCGGTACCGGCGGCGGAGATGATGGCGAAGACTGTTTGTTTGTGTTG</genome_strand>
        <mrna_strand>AATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAG.......................................................................................................................................................................................................................................GATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACGTCATCGTCATATGATGAAACAAAATGCAACAGTGGTACAACTGAGGAAACAAAGCCACTAGAAATTATTATTCCAAAAATACCCTCACAAGTTATGATTAATCTTGAACTTTCAATTGGGTTGCCGTTACATACTGATCATATTTCTTCACCAGAGTCAACGGCCTCATACAACTTCTTGACCACCGTAGCACCGCCGCCAACTGCGGCGGTACCGGCGGCGGAGATGATGGCGAAGACTGTTTGTTTGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243101" ref_strand="+" ref_description="SGN-E243101 [cLEE-2-C1]">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21624" stop="20467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21324" g_stop="20767" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E243101" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21324" e_stop="20767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACATATTCTCAACAACAACACTTTAACAAATTACATACCCTCAACAACAATACTTCAACAAATTACATATCCGCAATAACAAGCTCAATATTGATCTATCACAAGTTCCACAG-GAGGCAATCAGAAGATCAGCAAAACACGATATCAAGTTCACTAATAATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCACGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCACGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCCCAACCAATGCCTCAGAATAATGTAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</genome_strand>
        <mrna_strand>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271427" ref_strand="+" ref_description="SGN-E271427 [cLEM-5-D19]">
      <seq>aatgatctagcacataaatcttcaaaatcagtatctaatgggagggctatatcgaacaagaaagacgtaaatgatgagaaaggtcgtcaagagcgacgtcggaaggggctgaccttgcttaagagtgcatggccttctgaactagaacaaccactatatgacgttgatcttgtcataattttatgcgagatgaatgactttaaagaaggattgttgtttctgtatgagaagatgaaacttttcaaagaagttattgcatgctacatgcaggtacatgatcatgaaggtttgatttcatgctgcaagagattgggtgatttgggtaaggggggtgacccttctctttgggcagatttgttgaagtattttggtgaacttggagaagactgctcaaaagaagtcaaagaaatcctgacatacattgagaggggtgatatcttgcctcccattgtggttcttcagacacttgctaaaaacccgtgcctctctctctcagttatcaaagattacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38635" stop="39747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38935" g_stop="39447" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E271427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38935" e_stop="39447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</genome_strand>
        <mrna_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272243" ref_strand="+" ref_description="SGN-E272243 [cLEM-19-G14]">
      <seq>aatgatctagcacataaatcttcaaaatcagtatctaatgggagggctatatcgaacaagaaagacgtaaatgatgagaaaggtcgtcaagagcgacgtcggaaggggctgaccttgcttaagagtgcatggccttctgaactagaacaaccactatatgacgttgatcttgtcataattttatgcgagatgaatgactttaaagaaggattgttgtttctgtatgagaagatgaaacttttcaaagaagttattgcatgctacatgcaggtacatgatcatgaaggtttgatttcatgctgcaagagattgggtgatttgggtaaggggggtgacccttctctttgggcagatttgttgaagtattttggtgaacttggagaagactgctcaaaagaagtcaaagaaatcctgacatacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38635" stop="39659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38935" g_stop="39359" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E272243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38935" e_stop="39359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGA</genome_strand>
        <mrna_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271267" ref_strand="+" ref_description="SGN-E271267 [cLEM-5-D21]">
      <seq>aatgatctagcacataaatcttcaaaatcagtatctaatgggagggctatatcgaacaagaaagacgtaaatgatgagaaaggtcgtcaagagcgacgtcggaaggggctgaccttgcttaagagtgcatggccttctgaactagaacaaccactatatgacgttgatcttgacataattttatgcgagatgaagtgactttaaagaacgattgttgcttctgtatgagaagatgaaacttttcaaagaagttattgcatgctacatgcaggtacatgatcatgaaggtttgatttcatgctgcatgagattgggtgattcgggtaaagggggtgacccttctctttgggcagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38635" stop="39590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38935" g_stop="39290" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E271267" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38935" e_stop="39290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAA-TGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTT</genome_strand>
        <mrna_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGACATAATTTTATGCGAGATGAAGTGACTTTAAAGAACGATTGTTGCTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCATGAGATTGGGTGATTCGGGTAAAGGGGGTGACCCTTCTCTTTGGGCAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689197" ref_strand="+" ref_description="SGN-E689197 [t3_tus_80_I13]">
      <seq>aagaatcatcaataatgagaaaagagatccaggatctaagaacaaatgctagaatatttcagcttagcaagtgtactacttgcacattcaccctagaccttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctatnaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaataaaattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttaacaacatattattagtgtacttaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41187" stop="42490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41487" g_stop="42192" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E689197" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41487" e_stop="42192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATG</genome_strand>
        <mrna_strand>AAGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATNAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323368" ref_strand="+" ref_description="SGN-E323368 [cTOC-10-G5]">
      <seq>agaatcatcaataatgagaaaagagatccaggatctaagagcaaagggtagaatatttcagcttagcaagtgtactacttgcacattcaccctagaccttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41188" stop="42281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41488" g_stop="41981" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E323368" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41488" e_stop="41981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTG</genome_strand>
        <mrna_strand>AGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAGCAAAGGGTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737144" ref_strand="+" ref_description="SGN-E737144 [LC08CE09]">
      <seq>gtactacttgcacattcaccctagaccttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaataaaattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41259" stop="42464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41559" g_stop="42168" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E737144" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41559" e_stop="42168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTAT</genome_strand>
        <mrna_strand>GTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351581" ref_strand="+" ref_description="SGN-E351581 [cTOS-12-J17]">
      <seq>ttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaataaaattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttaacaacatattattagtgtacttaataattaataatgcatcagcagctaattatttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41286" stop="42514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41586" g_stop="42222" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E351581" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41586" e_stop="42222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTATAGGGAAATT</genome_strand>
        <mrna_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353593" ref_strand="+" ref_description="SGN-E353593 [cTOS-15-H16]">
      <seq>ttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaataaaattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttaacaacatattattagtgtacttaataattaataatgcatcagcagctaattattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41286" stop="42512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41586" g_stop="42212" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E353593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41586" e_stop="42212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTA</genome_strand>
        <mrna_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353471" ref_strand="+" ref_description="SGN-E353471 [cTOS-15-I17]">
      <seq>ttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactagagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaatataattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttaacaacatattattagtgtacttaataattaataatgcatcagcagctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41286" stop="42507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41586" g_stop="42207" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E353471" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41586" e_stop="42207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATT</genome_strand>
        <mrna_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAGAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATATAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724204" ref_strand="+" ref_description="SGN-E724204 [FC23BE12]">
      <seq>tttaaacttaaccctatcgaaactactccgagcgtccatagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttaactttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42212" stop="46152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42512" g_stop="42635" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45853" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="554" r_length="430" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E724204" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42512" e_stop="42635"/>
          <exon e_start="45424" e_stop="45853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACAT</genome_strand>
        <mrna_strand>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAACTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716223" ref_strand="+" ref_description="SGN-E716223 [FB16BG12]">
      <seq>cgaaactactccgagcgtccatagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42229" stop="46152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42529" g_stop="42635" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45851" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="535" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E716223" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42529" e_stop="42635"/>
          <exon e_start="45424" e_stop="45851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAC</genome_strand>
        <mrna_strand>CGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288150" ref_strand="+" ref_description="SGN-E288150 [cLES-7-O12]">
      <seq>aactactccgagcgtgcatatcatgaaaacgaacaaaggcaagagaacggcgatggcgtggaacaacgggttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccataagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctggcgtcttccagcgaaagaaaactgcttctggctagatcatcatgctattacgtctacaccacaataatgctgcccttggagcttccatgtgtgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttggttctgttttggcacaacattggtatgcctgggtcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42232" stop="46152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42532" g_stop="42635" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45857" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="538" r_length="434" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E288150" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42532" e_stop="42635"/>
          <exon e_start="45424" e_stop="45857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGT</genome_strand>
        <mrna_strand>AACTACTCCGAGCGTGCATATCATGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTGGAACAACGGGTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCATAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGGCGTCTTCCAGCGAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTACACCACAATAATGCTGCCCTTGGAGCTTCCATGTGTGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGGTTCTGTTTTGGCACAACATTGGTATGCCTGGGTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696978" ref_strand="+" ref_description="SGN-E696978 [LH_Ea10I16](-)">
      <seq>ctactccgagcgtccatagcaggaaaacgaagaaaggcaagagaacggcgatggcgttgaacaacggcttgcgttcatgtgcatccattatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttaccttcatgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtttggtttgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctcccccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttttgatggggcacaacattggtatgcctggttcattaattttaaaggttaactgaaaaccatattggtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42234" stop="72369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42534" g_stop="42635" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45850" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="527" r_length="425" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45851" i_stop="46860" i_length="1010">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46861" g_stop="46880" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="547" r_length="20" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E696978" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42534" e_stop="42635"/>
          <exon e_start="45424" e_stop="45850"/>
          <exon e_start="46861" e_stop="46880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATGGAAGTTACTTTTATATTTTTCTTCATATTTTCAAATTTTTACTTTTAAATCTGTTTCTTCAACTCTAGCGTTCCTTCATAGTCACAATCTTTTTACTGTGAAAATTTGTCTTCTTTTAATATATTTTACACTATATTATAAATAAATATAAAATGTATACTACATTGGGTGTTCTAATAATAATAATAATAATAATATTATTATTATTATTATTATTATTATTATTATTTTTAAAAAAGCATAGAAAATTTGAAGTTTAAATGAGGAACTCTTTATTTACAAGTCTGAAATCAAAACGGCAATAAATTTTTTTAAAAATTTCAAAAAGGCAACTCAACTAATTATGAAATTAACAGGGCATTAATTATAACGGTATCTAAATAAAATTTTCAAAAATGTGGCGCAAAATTTGATGAGCCTTAAAAGGCGCAACAACTTTTAGCCTTGTAAGGCTCAGTTGTCATGAGCCTTACAAGGCTCAGTTGTCAGCGCCTTGCATGTGGTTTTTGTTTTAGAAAAGAAATATCGTTTCATTCTCTTGTTTGTCAATTAGTTATTCTTTTTTTTTCATTTTATTTTCTTGGGTTAAAACTTGGACATTGTAATCTAATTGAGTTATTCTCTGGTACTACTTTCACATAATTTAATGTAGCTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAA</genome_strand>
        <mrna_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAAGAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGCTTGCGTTCATGTGCATCCATTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACCTTCATGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTTTGGTTTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCCCCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTTTGATGGGGCACAACATTGGTATGCCTGGTTCATTAATTTTA-AAGGTTAACTGAAAACCATATTGG-TGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693138" ref_strand="+" ref_description="SGN-E693138 [LH_Ea10I16]">
      <seq>ttactccgagcgtccatagcaggaaaacgaagaaaggcaagagaacggcgatggcgttgaacaacggcttgcgttcatgtgcatccattatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttaccttcatgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42235" stop="72369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42534" g_stop="42635" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45853" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="532" r_length="430" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45854" i_stop="46143" i_length="290">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.335" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46144" g_stop="46154" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="543" r_length="11" r_score="0.455"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E693138" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42534" e_stop="42635"/>
          <exon e_start="45424" e_stop="45853"/>
          <exon e_start="46144" e_stop="46154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAG</genome_strand>
        <mrna_strand>TTACTCCGAGCGTCCATAGCAGGAAAACGAAGAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGCTTGCGTTCATGTGCATCCATTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACCTTCATGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAA..................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284174" ref_strand="+" ref_description="SGN-E284174 [cLER-16-C13]">
      <seq>ctactccgagcgtccatagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctggtttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42234" stop="46141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42534" g_stop="42635" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45838" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="517" r_length="415" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="527"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E284174" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42534" e_stop="42635"/>
          <exon e_start="45424" e_stop="45838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACC</genome_strand>
        <mrna_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGGTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312887" ref_strand="+" ref_description="SGN-E312887 [cTOA-8-L1]">
      <seq>tccgagcgtccatagcaggaaaacgaacaaaggcaagagaacggcgatggcgtggaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgctttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42238" stop="46145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42538" g_stop="42635" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45845" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="520" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E312887" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42538" e_stop="42635"/>
          <exon e_start="45424" e_stop="45845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGG</genome_strand>
        <mrna_strand>TCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTGGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGCTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695322" ref_strand="+" ref_description="SGN-E695322 [LH_Ea06D16](-)">
      <seq>cgagggtccatagcaggaaaacgaagaaaggcaagagatcggcgatggcgttgaacaacggcttggtgttcatgtgcatccattatctccaaaactgtgaagagagagttcccctcaacatgtgtcaagagaatgggaggtaaaggacatgtcgaccctttttaccttcatgcaaaacgcatgtccaacttggacaggatgtcaccccagaagcggaagatgactcttggtgtatgttctgcagtctccattggtgttatagtcccagtttaaggtgtcgtcttccagcaaaagaaaagtgtttgtggatagatcatcatggtatttagtttcccccacaataatgctgcccttggagcttccatgtatgtagatggacctattgaattagagagcattaaatagctttcagtttttacttagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42240" stop="46053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42540" g_stop="42635" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45754" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="428" r_length="331" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E695322" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42540" e_stop="42635"/>
          <exon e_start="45424" e_stop="45754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGG-TTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTA</genome_strand>
        <mrna_strand>CGAGGGTCCATAGCAGGAAAACGAAGAAAGGCAAGAGATCGGCGATGGCGTTGAACAACGGCTTGGTGTTCATGTGCATCCATTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCCCTCAACATGTGTCAAGAGAATGGGAGGTAAAGGACATGTCGACCCTTTTTACCTTCATGCAAAACGCATGTCCAACTTGGACAGGATGTCACCCCAGAAGCGGAAGATGACTCTTGGTGTATGTTCTGCAGTCTCCATTGGTGTTATAGTCCCAGTTTAAGGTGTCGTCTTCCAGCAAAAGAAAAGTGTTTGTGGATAGATCATCATGGTATTTAGTTTCCCCCACAATAATGCTGCCCTTGGAGCTTCCATGTATGTAGATGGACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTTACTTAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711222" ref_strand="+" ref_description="SGN-E711222 [FB01BD10]">
      <seq>gtctcttagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaacatgtgtctgatttaatatccattttctgactggcaattactcctatcaattcaaagagaatgttcttctttttggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42245" stop="46226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42545" g_stop="42635" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45927" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="596" r_length="504" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="610"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E711222" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42545" e_stop="42635"/>
          <exon e_start="45424" e_stop="45927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTC-CATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGG</genome_strand>
        <mrna_strand>GTCTCTTAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711140" ref_strand="+" ref_description="SGN-E711140 [FB01AE06]">
      <seq>tagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanccccgggggggggggcgggaacccatttcccccaaaaggggggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42250" stop="72380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42550" g_stop="42635" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45850" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="513" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45851" i_stop="46701" i_length="851">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46702" g_stop="46708" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="520" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46709" i_stop="46860" i_length="152">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46861" g_stop="46928" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="587" r_length="67" r_score="0.515"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46929" i_stop="47826" i_length="898">
            <donor d_prob="0.000" d_score="0.40"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47827" g_stop="47846" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="607" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E711140" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42550" e_stop="42635"/>
          <exon e_start="45424" e_stop="45850"/>
          <exon e_start="46702" e_stop="46708"/>
          <exon e_start="46861" e_stop="46928"/>
          <exon e_start="47827" e_stop="47846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATGGAAGTTACTTTTATATTTTTCTTCATATTTTCAAATTTTTACTTTTAAATCTGTTTCTTCAACTCTAGCGTTCCTTCATAGTCACAATCTTTTTACTGTGAAAATTTGTCTTCTTTTAATATATTTTACACTATATTATAAATAAATATAAAATGTATACTACATTGGGTGTTCTAATAATAATAATAATAATAATATTATTATTATTATTATTATTATTATTATTATTTTTAAAAAAGCATAGAAAATTTGAAGTTTAAATGAGGAACTCTTTATTTACAAGTCTGAAATCAAAACGGCAATAAATTTTTTTAAAAATTTCAAAAAGGCAACTCAACTAATTATGAAATTAACAGGGCATTAATTATAACGGTATCTAAATAAAATTTTCAAAAATGTGGCGCAAAATTTGATGAGCCTTAAAAGGCGCAACAACTTTTAGCCTTGTAAGGCTCAGTTGTCATGAGCCTTACAAGGCTCAGTTGTCAGCGCCTTGCATGTGGTTTTTGTTTTAGAAAAGAAATATCGTTTCATTCTCTTGTTTGTCAATTAGTTATTCTTTTTTTTTCATTTTATTTTCTTGGGTTAAAACTTGGACATTGTAATCTAATTGAGTTATTCTCTGGTACTACTTTCACATAATTTAATGTAGCTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAATTTATCACCTCAAACCCAATTAAATATGAATACGATAAACATTTCCAAGTTCTTAATATTAAAAGTCAATAAATGGGTGACTTATAAGCACTGGCAACACGCCTCTATATGCTTGTCGCAATTACGAGTAAAACGCGACAAGCATTGGCCCCTACTCTTTATTCATAAAACACATTCAGTGATAGTGTTTTATGAGTAAAATTATGTTTTTTTTATACATTGTCAAAATTAGTATATTGTCCCTACTCTTTATGCATAAAATGCGTTCAGTGATAGTTTTTTATGAGTAAAATTCTATTTCTTGTTATAAATTATTGAAGTTACTACATTGCTCCTACTATTTATGCATAAAATGTGTTCAGTGATAGCATTTTATTAGTTAAATTATGTTTCTTTTTATAAATTGTTGAAATTACTATATTGCCCCTACTCTTCATGCATAAAATGTGTTCAGTGACGGCATTTTATGAGTAAAATTATGTTTCTTTTTATAAATTGTTGAAATTACTATATTGTGTCTACTTTTTATTCATAAATAGCGTTCAGTAATAGCGTTTTATGAGTAAAATTATATTTCTTTCTTATAAATTATTGTATTTATTATATTACCCTTACTCTTTATTCATAAAACGCGTTCTTTACTTTATTCATAAAACGCGATCAGGATATCTCATTTTATCCCATAAACCAAACGACCCTTCCATAAGAACTGTTTTCAAAATCATGATGAAAGCGAAGATTGAAGAACCAAACAAATTTAGTAAGATAGGTCCTATTTAGTGTTTGATTCGCCTTTTCAATTGTTTTGTTATGTGGTACTTGAATCAATTATCTTTTTAAAATAATATTTTTATTTTCACGAGATAAAAATAAGAGTATATATATATATATACTCTTTAAATTCTACTTCTAATAATATAGTGAGGATATTATTGTTGTTGATTAGGATAAGGCAGACAACAAAAA</genome_strand>
        <mrna_strand>TAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCCCGGGGGGGGGGGCGGGA-ACCCATTTCCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGGGGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552082" ref_strand="+" ref_description="SGN-E552082 [cTSB-2-M19]">
      <seq>agcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaacatgtgtctgatttaatatccattttctgactggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42251" stop="72393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42551" g_stop="42635" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45886" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="548" r_length="463" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45887" i_stop="46701" i_length="815">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46702" g_stop="46708" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="555" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46709" i_stop="46838" i_length="130">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46839" g_stop="46880" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="597" r_length="42" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E552082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42551" e_stop="42635"/>
          <exon e_start="45424" e_stop="45886"/>
          <exon e_start="46702" e_stop="46708"/>
          <exon e_start="46839" e_stop="46880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATGGAAGTTACTTTTATATTTTTCTTCATATTTTCAAATTTTTACTTTTAAATCTGTTTCTTCAACTCTAGCGTTCCTTCATAGTCACAATCTTTTTACTGTGAAAATTTGTCTTCTTTTAATATATTTTACACTATATTATAAATAAATATAAAATGTATACTACATTGGGTGTTCTAATAATAATAATAATAATAATATTATTATTATTATTATTATTATTATTATTATTTTTAAAAAAGCATAGAAAATTTGAAGTTTAAATGAGGAACTCTTTATTTACAAGTCTGAAATCAAAACGGCAATAAATTTTTTTAAAAATTTCAAAAAGGCAACTCAACTAATTATGAAATTAACAGGGCATTAATTATAACGGTATCTAAATAAAATTTTCAAAAATGTGGCGCAAAATTTGATGAGCCTTAAAAGGCGCAACAACTTTTAGCCTTGTAAGGCTCAGTTGTCATGAGCCTTACAAGGCTCAGTTGTCAGCGCCTTGCATGTGGTTTTTGTTTTAGAAAAGAAATATCGTTTCATTCTCTTGTTTGTCAATTAGTTATTCTTTTTTTTTCATTTTATTTTCTTGGGTTAAAACTTGGACATTGTAATCTAATTGAGTTATTCTCTGGTACTACTTTCACATAATTTAATGTAGCTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAA</genome_strand>
        <mrna_strand>AGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA..................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339278" ref_strand="+" ref_description="SGN-E339278 [cTOF-4-D5]">
      <seq>aggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacatgcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggctcattaataatattttcttaactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42254" stop="46134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42554" g_stop="42635" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45834" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="493" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E339278" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42554" e_stop="42635"/>
          <exon e_start="45424" e_stop="45834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAA</genome_strand>
        <mrna_strand>AGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACATGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGCTCATTAATAATATTTTCTTAACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282952" ref_strand="+" ref_description="SGN-E282952 [cLER-17-O11]">
      <seq>ggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42280" stop="46152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42580" g_stop="42635" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45851" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="484" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E282952" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42580" e_stop="42635"/>
          <exon e_start="45424" e_stop="45851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAC</genome_strand>
        <mrna_strand>GGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327014" ref_strand="+" ref_description="SGN-E327014 [cTOC-18-G14]">
      <seq>gcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42287" stop="72369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42587" g_stop="42635" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45851" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="477" r_length="428" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E327014" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42587" e_stop="42635"/>
          <exon e_start="45424" e_stop="45851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAC</genome_strand>
        <mrna_strand>GCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722972" ref_strand="+" ref_description="SGN-E722972 [FC18DF12]">
      <seq>aatcggccgaattgaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42296" stop="72381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42596" g_stop="42635" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="54" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45853" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="484" r_length="430" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45854" i_stop="46860" i_length="1007">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46861" g_stop="46926" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="550" r_length="66" r_score="0.576"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E722972" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42596" e_stop="42635"/>
          <exon e_start="45424" e_stop="45853"/>
          <exon e_start="46861" e_stop="46926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATGGAAGTTACTTTTATATTTTTCTTCATATTTTCAAATTTTTACTTTTAAATCTGTTTCTTCAACTCTAGCGTTCCTTCATAGTCACAATCTTTTTACTGTGAAAATTTGTCTTCTTTTAATATATTTTACACTATATTATAAATAAATATAAAATGTATACTACATTGGGTGTTCTAATAATAATAATAATAATAATATTATTATTATTATTATTATTATTATTATTATTTTTAAAAAAGCATAGAAAATTTGAAGTTTAAATGAGGAACTCTTTATTTACAAGTCTGAAATCAAAACGGCAATAAATTTTTTTAAAAATTTCAAAAAGGCAACTCAACTAATTATGAAATTAACAGGGCATTAATTATAACGGTATCTAAATAAAATTTTCAAAAATGTGGCGCAAAATTTGATGAGCCTTAAAAGGCGCAACAACTTTTAGCCTTGTAAGGCTCAGTTGTCATGAGCCTTACAAGGCTCAGTTGTCAGCGCCTTGCATGTGGTTTTTGTTTTAGAAAAGAAATATCGTTTCATTCTCTTGTTTGTCAATTAGTTATTCTTTTTTTTTCATTTTATTTTCTTGGGTTAAAACTTGGACATTGTAATCTAATTGAGTTATTCTCTGGTACTACTTTCACATAATTTAATGTAGCTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAATTTATCACCTCAAACCCAATTAAATATGAATACGATAAACATTTCC</genome_strand>
        <mrna_strand>AACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240380" ref_strand="+" ref_description="SGN-E240380 [cLED-25-B9]">
      <seq>caagcatacttccatcagtttgacaatcttttcattggaacagtgtggcaattgaaacgtgtttttctacggcctgcttgaatgacttcgaattatttattatgccaacttctttctttatgcacaagttcaaacgtctgtcttaaccgttacatttcaaacattctttgatacttgtttagttaattatacatgttttgaaacttccatttctctcatatttcatttctaattgtctttcatcttaccgtttctttatgaaaagtttatttcaatcaaatttggatgctgttgttcatgctttttataagtctgaccttactgataattgatatttattgtttggtcagtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44774" stop="45902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45074" g_stop="45602" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E240380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45074" e_stop="45602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCT</genome_strand>
        <mrna_strand>CAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357758" ref_strand="+" ref_description="SGN-E357758 [cTOS-24-J24]">
      <seq>tcgagtttttttttttttttttttttttttttttttttgaattgataggagtaattgccagtcagaaaatggatattaaatcagacacatgttcaaccaatatggttttcagttaagaaaatattattaatgaaccaggcataccaatgttgtgccaaaacagaaacaagaaaagcaaccaccagggtaaagctaagtcaaaactgaaagctatttaatgctctctaattcaataggttcatcttcatacatggaagctccaagggcagcattattgtggtggagacgtaatagcatgatgatctagccagaagcagttttcttttgctggaagacgacagcataaactgggactataacaccaatggcgactgcagaccagacaccaagagtcatcttcagcttctggtttgacatcctgtccaagttgtacatgtgttttgcgtgaatgtaaaaagggtcgtcatgtccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72373" stop="45168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46893" g_stop="46861" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.697"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46860" i_stop="45909" i_length="952">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45908" g_stop="45468" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="474" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E357758" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46893" e_stop="46861"/>
          <exon e_start="45908" e_stop="45468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTGATAAATTTTTGTTTTATATTTTTTTAAGAGATAGTATTTTAATTTAGCTACATTAAATTATGTGAAAGTAGTACCAGAGAATAACTCAATTAGATTACAATGTCCAAGTTTTAACCCAAGAAAATAAAATGAAAAAAAAAGAATAACTAATTGACAAACAAGAGAATGAAACGATATTTCTTTTCTAAAACAAAAACCACATGCAAGGCGCTGACAACTGAGCCTTGTAAGGCTCATGACAACTGAGCCTTACAAGGCTAAAAGTTGTTGCGCCTTTTAAGGCTCATCAAATTTTGCGCCACATTTTTGAAAATTTTATTTAGATACCGTTATAATTAATGCCCTGTTAATTTCATAATTAGTTGAGTTGCCTTTTTGAAATTTTTAAAAAAATTTATTGCCGTTTTGATTTCAGACTTGTAAATAAAGAGTTCCTCATTTAAACTTCAAATTTTCTATGCTTTTTTAAAAATAATAATAATAATAATAATAATAATAATAATATTATTATTATTATTATTATTAGAACACCCAATGTAGTATACATTTTATATTTATTTATAATATAGTGTAAAATATATTAAAAGAAGACAAATTTTCACAGTAAAAAGATTGTGACTATGAAGGAACGCTAGAGTTGAAGAAACAGATTTAAAAGTAAAAATTTGAAAATATGAAGAAAAATATAAAAGTAACTTCCATAAAACTGGCCTAGGATTCTCTTACATGAACTTATGCAATTCTTCAAACAGTGATCAGAGTTTAAGATATGGAAACTTCCAATTGATTATATACTCATTTTTTGAACCGTCGATTATGGATTCAGAAAGAAACATTTTATGTAACATTTGTAAAACCTTTTCCTTTTATTTTAGTTTGCCCAAATACTAATATACTACACCAATTTTTGTTGGCTGGGTACGTGTGCTATATATCAGGCATATCATAGAGATTTTACCCCAAAAGGAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCAGCTTCTGGTTTGACATCCTGTCCAAGTTGTACATGTGTTTTGCGTGAATGTAAAAAGGTTCGTCATGTCCATG</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCAGCTTCTGGTTTGACATCCTGTCCAAGTTGTACATGTGTTTTGCGTGAATGTAAAAAGGGTCGTCATGTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349432" ref_strand="+" ref_description="SGN-E349432 [cTOS-1-B12]">
      <seq>ctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaacatgtgtctgatttaatatccattttctgactggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45184" stop="46187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45484" g_stop="45886" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E349432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45484" e_stop="45886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA</genome_strand>
        <mrna_strand>CTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229376" ref_strand="+" ref_description="SGN-E229376 [cLEL-4-I19](-)">
      <seq>tttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45185" stop="72369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45485" g_stop="45850" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45851" i_stop="46011" i_length="161">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46012" g_stop="46027" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="382" r_length="16" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E229376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45485" e_stop="45850"/>
          <exon e_start="46012" e_stop="46027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAA</genome_strand>
        <mrna_strand>TTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA.................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282226" ref_strand="+" ref_description="SGN-E282226 [cLES-4-K19]">
      <seq>ttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45188" stop="46152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45488" g_stop="45851" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E282226" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45488" e_stop="45851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAC</genome_strand>
        <mrna_strand>TTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736384" ref_strand="+" ref_description="SGN-E736384 [LC05CD05]">
      <seq>cgcttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaaaaactctgggggggggccggggccccttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45215" stop="72377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45513" g_stop="45855" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45856" i_stop="46143" i_length="288">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.335" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46144" g_stop="46186" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="385" r_length="42" r_score="0.442"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E736384" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45513" e_stop="45855"/>
          <exon e_start="46144" e_stop="46186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATG</genome_strand>
        <mrna_strand>CGCTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAAAA................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACTCTG-GGGGGGGGCCGGGGCCCCTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229169" ref_strand="-" ref_description="SGN-E229169 [cLEL-29-J14](-)">
      <seq>tttttttttttttttttgaagaacattctctttgaattgataggagtaattgccagtcagaaaatggatattaaatcagacacatgttcaaccaatatggttttcagttaagaaaatattattaatgaaccaggcataccaatgttgtgccaaaacagaaacaagaaaagcaaccaccagggtaaagctaagtcaaaactgaaagctatttaatgctctctaattcaataggttcatcttcatacatggaagctccaagggcagcattattgtggtggagacgtaatagcatggatgatctagccagaagcagttttcttttgctggaagacgacagcataaactgggactataacaccaatggcgactgcagaccagacaccaagagtcatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72369" stop="45241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46877" g_stop="46861" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46860" i_stop="45920" i_length="941">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45919" g_stop="45541" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="397" r_length="380" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E229169" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229169" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46877" e_stop="46861"/>
          <exon e_start="45919" e_stop="45541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTATATTTTTTTAAGAGATAGTATTTTAATTTAGCTACATTAAATTATGTGAAAGTAGTACCAGAGAATAACTCAATTAGATTACAATGTCCAAGTTTTAACCCAAGAAAATAAAATGAAAAAAAAAGAATAACTAATTGACAAACAAGAGAATGAAACGATATTTCTTTTCTAAAACAAAAACCACATGCAAGGCGCTGACAACTGAGCCTTGTAAGGCTCATGACAACTGAGCCTTACAAGGCTAAAAGTTGTTGCGCCTTTTAAGGCTCATCAAATTTTGCGCCACATTTTTGAAAATTTTATTTAGATACCGTTATAATTAATGCCCTGTTAATTTCATAATTAGTTGAGTTGCCTTTTTGAAATTTTTAAAAAAATTTATTGCCGTTTTGATTTCAGACTTGTAAATAAAGAGTTCCTCATTTAAACTTCAAATTTTCTATGCTTTTTTAAAAATAATAATAATAATAATAATAATAATAATAATATTATTATTATTATTATTATTAGAACACCCAATGTAGTATACATTTTATATTTATTTATAATATAGTGTAAAATATATTAAAAGAAGACAAATTTTCACAGTAAAAAGATTGTGACTATGAAGGAACGCTAGAGTTGAAGAAACAGATTTAAAAGTAAAAATTTGAAAATATGAAGAAAAATATAAAAGTAACTTCCATAAAACTGGCCTAGGATTCTCTTACATGAACTTATGCAATTCTTCAAACAGTGATCAGAGTTTAAGATATGGAAACTTCCAATTGATTATATACTCATTTTTTGAACCGTCGATTATGGATTCAGAAAGAAACATTTTATGTAACATTTGTAAAACCTTTTCCTTTTATTTTAGTTTGCCCAAATACTAATATACTACACCAATTTTTGTTGGCTGGGTACGTGTGCTATATATCAGGCATATCATAGAGATTTTACCCCAAAAGGAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCAT-GATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228689" ref_strand="-" ref_description="SGN-E228689 [cLEL-29-J14](-)">
      <seq>tttttttttttttttttgaagaacattctctttgaattgataggagtaattgccagtcagaaaatggatattaaatcagacacatgttcaaccaatatggttttcagttaagaaaatattattaatgaaccaggcataccaatgttgtgccaaaacagaaacaagaaaagcaaccaccagggtaaagctaagtcaaaactgaaagctatttaatgctctctaattcaataggttcatcttcatacatggaagctccaagggcagcattattgtggtggagacgtaatagcatgatgatctagccagaagcagttttcttttgctggaagacgacagcataaactgggactataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72369" stop="45281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46877" g_stop="46861" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46860" i_stop="45920" i_length="941">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45919" g_stop="45581" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="356" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E228689" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228689" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46877" e_stop="46861"/>
          <exon e_start="45919" e_stop="45581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTATATTTTTTTAAGAGATAGTATTTTAATTTAGCTACATTAAATTATGTGAAAGTAGTACCAGAGAATAACTCAATTAGATTACAATGTCCAAGTTTTAACCCAAGAAAATAAAATGAAAAAAAAAGAATAACTAATTGACAAACAAGAGAATGAAACGATATTTCTTTTCTAAAACAAAAACCACATGCAAGGCGCTGACAACTGAGCCTTGTAAGGCTCATGACAACTGAGCCTTACAAGGCTAAAAGTTGTTGCGCCTTTTAAGGCTCATCAAATTTTGCGCCACATTTTTGAAAATTTTATTTAGATACCGTTATAATTAATGCCCTGTTAATTTCATAATTAGTTGAGTTGCCTTTTTGAAATTTTTAAAAAAATTTATTGCCGTTTTGATTTCAGACTTGTAAATAAAGAGTTCCTCATTTAAACTTCAAATTTTCTATGCTTTTTTAAAAATAATAATAATAATAATAATAATAATAATAATATTATTATTATTATTATTATTAGAACACCCAATGTAGTATACATTTTATATTTATTTATAATATAGTGTAAAATATATTAAAAGAAGACAAATTTTCACAGTAAAAAGATTGTGACTATGAAGGAACGCTAGAGTTGAAGAAACAGATTTAAAAGTAAAAATTTGAAAATATGAAGAAAAATATAAAAGTAACTTCCATAAAACTGGCCTAGGATTCTCTTACATGAACTTATGCAATTCTTCAAACAGTGATCAGAGTTTAAGATATGGAAACTTCCAATTGATTATATACTCATTTTTTGAACCGTCGATTATGGATTCAGAAAGAAACATTTTATGTAACATTTGTAAAACCTTTTCCTTTTATTTTAGTTTGCCCAAATACTAATATACTACACCAATTTTTGTTGGCTGGGTACGTGTGCTATATATCAGGCATATCATAGAGATTTTACCCCAAAAGGAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268578" ref_strand="+" ref_description="SGN-E268578 [cLEI-13-H3]">
      <seq>cactatgctgggtttccaccaccagattccgggcaacagttttgggcaagacccagatgagaatttcatgaagaagaggtatagagaagatacaactgcagcatcaacttcaccatcgtcatcatcagctaaaccggaaagaaccggagttcaaggtcacgaaccggatcaagaatcgaaacccggttcatcgaatccctctagctacataccgactcccgccatgtgggctgttggtccggcggccggtaacgtcggaaacacgttctggatgctaccaggtacctcatcaaccatgcagagaattggtggtttcgagttaccgggaggtggccggttcagtccggttcaactaggatcaatgtttttgcagcagccacagccggttcagcagctggggttgggtgtgacagagacaaatatgggaatgttggcatcgatgaatgcatataacagtagtagtagtaggggtagtgggattgatttggggatgaatttggaacaacatcatcatcatcaaaatcagcctcaaggtagtgacagtggtgatgaaaatcacaaagattcccaatcataactccaacattgataccacaaaaagatgtgtgggactgtttttgtcaaatctcgagtttgagtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51645" stop="50403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51345" g_stop="50703" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E268578" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51345" e_stop="50703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTTTTGTCAAATCTCGAGTTTGAGTCATG</genome_strand>
        <mrna_strand>CACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAAGATGTGTGGGACTGTTTTTGTCAAATCTCGAGTTTGAGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371256" ref_strand="+" ref_description="SGN-E371256 [TUS-27-A19]">
      <seq>cactatgctgggtttccaccaccagattccgggcaacagttttgggcaagacccagatgagaatttcatgaagaagaggtatagagaagatacaactgcagcatcaacttcaccatcgtcatcatcagctaaaccggaaagaaccggagttcaaggtcacgaaccggatcaagaatcgaaacccggttcatcgaatccctctagctacataccgactcccgccatgtgggctgttggtccggcggccggtaacgtcggaaacacgttctggatgctaccaggtacctcatcaaccatgcagagaattggtggtttcgagttaccgggaggtggccggttcagtccggttcaactaggatcaatgtttttgcagcagccacagccggttcagcagctggggttgggtgtgacagagacaaatatgggaatgttggcatcgatgaatgcatataacagtagtagtagtaggggtagtgggattgatttggggatgaatttggaacaacatcatcatcatcaaaatcagcctcaaggtagtgacagtggtgatgaaaatcacaaagattcccaatcataactccaacattgataccacaaaaggatgtgtgggactgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51645" stop="50429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51345" g_stop="50729" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E371256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51345" e_stop="50729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTT</genome_strand>
        <mrna_strand>CACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303529" ref_strand="+" ref_description="SGN-E303529 [cLEX-2-B4]">
      <seq>ttgagccttttttcttttcctaaaaacttccaattggttaaagttttcaaatatcaaacaaatctttgtttgttgttacgccatggaatttagagagtcaaatagcaaaaacaaccaagatggtgggagtaatagcaataataatagtaatgaaaataatagcaatgtgatttctactaaaattgttaagaagccatcgaaagaccgtcacaccaaggtggatggtcgagggcggcgcattcgaatgccggctttatgcgccgccagggtttttcagctaaccaaagaattgggtcataagtcggatggcgaaaccatagagtggctattgcaacaagctgaaccgtcgattatagctgcgacgggaacaggtacaattccggctaatttctcaactcttaatgtctctttacgcagcagcgggactacaatttcagctccgccgtcgaaatctgcgccgcttttcattcacggcggtgctgccactatgctgggtttccaccaccagattccgggcaacagttttgggcaagacccagatgagaatttcatgaagaagaggtatagagaagatacaactgcagcatcaacttcaccatcgtcatcatcagctaaaccggaaagaaccggagttcaaggtcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52128" stop="50885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51828" g_stop="51185" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E303529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51828" e_stop="51185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCCTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACG</genome_strand>
        <mrna_strand>TTGAGCCTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324196" ref_strand="+" ref_description="SGN-E324196 [cTOC-4-H22]">
      <seq>ttctgttttggctcattttgcactactacttgctttcatttgagcctttttttcttttcctaaaaacttccaattggttaaagttttcaaatatcaaacaaatctttgtttgttgttacgccatggaatttacacagtcaaatagcaaaaacaaccaatatggtgggagtaatagcaataataatagtaatgaaaataatagcaatgtgatttctactaaaatagttaagaagccatcgaaagaccgtcacaccaaggtggatggtcgagggcggcgcattcgaatgccggctttatgcgccgtcagggtttttcagctaaccaaagaattgggtcataagtcggatggcgaaaccatagagtggctattgcaacaagctgaaccgtcgattatagctgcgacgggaacaggtacaattccggctaatttctcaactcttaatgtctctttacgcagcagcgggactacaatttcagctccgccgtcgaaatctgcgccgcttttcattcacggcggtgctgccactatgctgggtttccaccaccagattccgggcaacagttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52167" stop="51000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51867" g_stop="51300" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E324196" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51867" e_stop="51300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTTTGGCTCATTTTGCACTACTACTTGCTTTCATTTGAGCC-TTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGG</genome_strand>
        <mrna_strand>TTCTGTTTTGGCTCATTTTGCACTACTACTTGCTTTCATTTGAGCCTTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTACACAGTCAAATAGCAAAAACAACCAATATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATAGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGTCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345920" ref_strand="+" ref_description="SGN-E345920 [cTOF-24-J3]">
      <seq>tttaatgttattcctgattcaatcccagagtgggtatttgattttgtgcctacacgtggaggttactttattggaaacgttagtcctgcaaggatggacttcaggtggtttgctttgggtaactgtattgcaatcttgtcttcccttgccactccagaacaagcttctgctattatggatctcatagaatcccgctgggaggagctagtagcagatatgcctttgaagatatgctatccagcaattgaaaatcacgaatggcggatagtaactggttgtgatcccaagaatattagatggagttaccataatggaggatcttggccagtgcttttgtggttgctaacggctgcctgcattaagactggacggccacaaattgcaagacgagcaattgatcttgctgagagccgcttactcaaggacagctggcctgaatattatgatggaaagctcggcagatacattggtaaacaagcaaggaagcaccagacatggtcaattgctggatatcttgtagcaaagatgttgctggaggatccttcacacttgggaatgatctctttggaggaggacaagcaaatgaagcctgtaatcaagcgatcatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64565" stop="63131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64265" g_stop="63938" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63937" i_stop="63715" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63714" g_stop="63431" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="612" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E345920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64265" e_stop="63938"/>
          <exon e_start="63714" e_stop="63431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAGGTTCGACCATCATCCTTCTGCACTGCATTTTATTTGACTTTGATCATTGTTGGAAGTTATTTATTCAACCCTATACGATGTTATAAGGATTCTTTGCTTTGGAATTTTTTTGTTAGTTTTAGTTCTATTAGTGAAAGAAATGGAATGCTTAGTCTAATTTTGAAGTCAATTGATCTTACGCTTGCTAATGCTACTACACACATGATTCACCTCTTAAACACAGTGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTAAACAAGCAAGGAAGCACCAGACATGGTCAATTGCTGGATATCTTGTAGCAAAGATGTTGCTGGAGGATCCTTCACACTTGGGAATGATCTCTTTGGAGGAGGACAAGCAAATGAAGCCTGTAATCAAGCGATCATCTTCA</genome_strand>
        <mrna_strand>TTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG...............................................................................................................................................................................................................................TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTAAACAAGCAAGGAAGCACCAGACATGGTCAATTGCTGGATATCTTGTAGCAAAGATGTTGCTGGAGGATCCTTCACACTTGGGAATGATCTCTTTGGAGGAGGACAAGCAAATGAAGCCTGTAATCAAGCGATCATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263372" ref_strand="+" ref_description="SGN-E263372 [cLEG-62-L7]">
      <seq>acatttccaactctgctatgtgctgatggatgctcaatgattgataggaggatgggtgtttatggatatcctattgagatccaagctctcttcttcatggcactgagatctgcattggccatgttgaagcacgatacagaagggaaagaattcattgagagaatagtgaagcgcctgcatgccttgagttatcatatgcgaagttatttttggctcgactttcaacagttaaatgacatatatcgctataaaactgaagagtattctcacacagcagtaaataagtttaatgttattcctgattcaatcccagagtgggtatttgattttgtgcctacacgtggaggttactttattggaaacgttagtcctgcaaggatggacttcaggtggtttgctttgggtaactgtattgcaatcttgtcttcccttgccactccagaacaagcttctgctattatggatctcatagaatcccgctgggaggagctagtagcagatatgcctttgaagatatgctatccagcaattgaaaatcacgaatggcggatagtaactggttgtgatcccaagaatattagatggagttaccataatggaggatcttggccagtgcttttgtggttgctaacggctgcctgcattaagactggacggccacaaattgcaagacgagcaattgatcttgctgagagccgcttactcaaggacagctggcctgaatattatgatggaaagctcggcagatacattggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66474" stop="63271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66174" g_stop="66121" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66120" i_stop="64497" i_length="1624">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64496" g_stop="63938" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="613" r_length="559" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63937" i_stop="63715" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63714" g_stop="63571" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="757" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E263372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66174" e_stop="66121"/>
          <exon e_start="64496" e_stop="63938"/>
          <exon e_start="63714" e_stop="63571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATGGTAATACATTTTGTCATCATACCTTCTCAATATATTTGGATCTCTTCTTATCATTGTGATATAAAGCCTGTTTAGCGTAGATGATTGGAGCAATTTATAAGCAACAAGAGCTGAAGCTGGTTTTATAAATAAGGAGTTAGTTTCTTTCAATTTTTGTGATTAGGATTCATTTAGATGTGTATTCTTATGTTCTTCTATGCATTCTCATCTTATGTTTCATGGTTATACAAAACTTTTTAGTCGGAAAATGAACTTTTGCAATAGATTGTCTAGTGACCTTTAGCTTTGTTTTCTTTGTCCCTGTGACAATGTGACATGAGCTCTAATGCATAGTAAATGGATTTTAGACTCTAGTAGAATTCAGTGAATGTTTTTAGTGTAGATCTCTATTCTAAGTTGAAACTAGCACTTTGTACATCCCTCAGATCAGGCTAAATTTTGTGGGAGATTTGTCAACAAAACGTATAACACAGTAAAATTTTGAATCATTGGCTCCCTAAAAGATTGTTTGCATCATTAGCCTCTTCAAATGATGTTCTGTTAGAGTTCATGTAACCAACCACCTGAGCTATTAATATTCCCCGACAATTGTTGTTCAATTGTTCAGGATATTGATATTTTGGTCCATAACTTATGTTCAAGCGTTGGACATACACTCTTGATGTTTGAATTTAGAGCTTTTAACTAATCTACTAGTTTCTCAGACAAGTAACTTTTGTGAAAATTACAACCCATTCGTCTTTAGCAGTTACTGCTTTTTATTGACTTTGGAATAGTCAATCAGAACGGAATTAATGATAAAGCTGAAAGAAAATAGAGAATCAGAAAGGGAGGAATGAGATGATTTATTCTGTTTCAGTCCTAAAAGGCTGTCACGCAGCTCATATTCTTCTTTGTTGAAGGGGAAACAAACTCCTTGTCTTCCTCTCCCTTTTCTTCAACTTTTTGACTTTTTACATTTTCCTACTTCTTTGTATGGGCATAATGTGCGACCATATGATTTGAGCCAATTAATGGATTTCTTGGAATTGTTAGATAGAACAGTCTAGTAGTCTGTTTTTCTTTCTAAAGCTTTATGTTGTTTACGTAACCTTTTAGTACCTTGTTGGAACCCTTTTAATAAAACTTTTGCCTTATCAGAAAATTAAACATAACGCAGCTTATCTAGTGAAATTTTAGTGTTTTTTTTTTTAAGAATGAGAAACCATAACATGGCCTAATTGAACCGTTTCTGGTTATACCTCATGCGTTGAATTGCTACGTTTCATCATTTCTGAAGCTTCTCTTCCAGCTTAGTTATCCGTGACATACAAATTTCTTTAAAAATTTTAATTTTTCAAGTCAATGAATGTCTAGAGGTGAACCTTTTATTTATGGTACTCTATTGTTTTGTCTGATATCTGACAATGATCGGAAAACTCTAATAGTAAATGGATCTAATCTAAGAGACTGAAATTCTCGCCCTTGTGAGTTTCCTTAATCATTCTTAGAGGACTAGATTTTTATGCTTAAAAGAACAGTAACACAACTTTTTCTTGCCTCCAAAATTTAGGATCCATGATTGATGTTTTTTTCTTGAAAAGACATTAATTGGATACTAATTTTTATTGTGGTTGATTTTCAGGGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAGGTTCGACCATCATCCTTCTGCACTGCATTTTATTTGACTTTGATCATTGTTGGAAGTTATTTATTCAACCCTATACGATGTTATAAGGATTCTTTGCTTTGGAATTTTTTTGTTAGTTTTAGTTCTATTAGTGAAAGAAATGGAATGCTTAGTCTAATTTTGAAGTCAATTGATCTTACGCTTGCTAATGCTACTACACACATGATTCACCTCTTAAACACAGTGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTA</genome_strand>
        <mrna_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG...............................................................................................................................................................................................................................TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725594" ref_strand="+" ref_description="SGN-E725594 [LA04AF12]">
      <seq>ctcgactttcaacagttaaatgacatatatcgctataaaactgaagagtattctcacacagcagtaaataagtttaatgttattcctgattcaatcccagagtgggtatttgattttgtgcctacacgtggaggttactttattggaaacgttagtcctgcaaggatggacttcaggtggtttgctttgggtaactgtattgcaatcttgtcttcccttgccactccagaacaagcttctgctattatggatctcatagaatcccgctgggaggagctagtagcagatatgcctttgaagatatgctatccagcaattgaaaatcacgaatggcggatagtaactggttgtgatcccaagaatattagatggagttaccataatggaggatcttggccagtgcttttgtggttgctaacggctgcctgcattaagactggacggccacaaattggcagacgagcaattgatcttgctgagagccgcttactcaaggacagctggcctgaatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64637" stop="63300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64337" g_stop="63938" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63937" i_stop="63715" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63714" g_stop="63600" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="515" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E725594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64337" e_stop="63938"/>
          <exon e_start="63714" e_stop="63600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAGGTTCGACCATCATCCTTCTGCACTGCATTTTATTTGACTTTGATCATTGTTGGAAGTTATTTATTCAACCCTATACGATGTTATAAGGATTCTTTGCTTTGGAATTTTTTTGTTAGTTTTAGTTCTATTAGTGAAAGAAATGGAATGCTTAGTCTAATTTTGAAGTCAATTGATCTTACGCTTGCTAATGCTACTACACACATGATTCACCTCTTAAACACAGTGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTA</genome_strand>
        <mrna_strand>CTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG...............................................................................................................................................................................................................................TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGGCAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254129" ref_strand="+" ref_description="SGN-E254129 [cLEG-34-I5]">
      <seq>acatttccaactctgctatgtgctgatggatgctcaatgattgataggaggatgggtgtttatggatatcctattgagatccaagctctcttcttcatggcactgagatctgcattggccatgttgaagcacgatacagaagggaaagaattcattgagagaatagtgaagcgcctgcatgccttgagttatcatatgcgaagttatttttggctcgactttcaacagttaaatgacatatatcgctataaaactgaagagtattctcacacagcagtaaataagtttaatgttattcctgattcaatcccagagtgggtatttgattttgtgcctacacgtggaggttactttattggaaacgttagtcctgcaaggatggacttcaggtggtttgctttgggtaactgtattgcaatcttgtcttcccttgccactccagaacaagcttctgctattatggatctcatagaatcccgctgggaggagctagtagcagatatgcctttgaagatatgctatccagcaattgaaaatcacgaatggcggatagtaactggttgtgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66474" stop="63682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66174" g_stop="66121" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66120" i_stop="64497" i_length="1624">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64496" g_stop="63982" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="569" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E254129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66174" e_stop="66121"/>
          <exon e_start="64496" e_stop="63982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATGGTAATACATTTTGTCATCATACCTTCTCAATATATTTGGATCTCTTCTTATCATTGTGATATAAAGCCTGTTTAGCGTAGATGATTGGAGCAATTTATAAGCAACAAGAGCTGAAGCTGGTTTTATAAATAAGGAGTTAGTTTCTTTCAATTTTTGTGATTAGGATTCATTTAGATGTGTATTCTTATGTTCTTCTATGCATTCTCATCTTATGTTTCATGGTTATACAAAACTTTTTAGTCGGAAAATGAACTTTTGCAATAGATTGTCTAGTGACCTTTAGCTTTGTTTTCTTTGTCCCTGTGACAATGTGACATGAGCTCTAATGCATAGTAAATGGATTTTAGACTCTAGTAGAATTCAGTGAATGTTTTTAGTGTAGATCTCTATTCTAAGTTGAAACTAGCACTTTGTACATCCCTCAGATCAGGCTAAATTTTGTGGGAGATTTGTCAACAAAACGTATAACACAGTAAAATTTTGAATCATTGGCTCCCTAAAAGATTGTTTGCATCATTAGCCTCTTCAAATGATGTTCTGTTAGAGTTCATGTAACCAACCACCTGAGCTATTAATATTCCCCGACAATTGTTGTTCAATTGTTCAGGATATTGATATTTTGGTCCATAACTTATGTTCAAGCGTTGGACATACACTCTTGATGTTTGAATTTAGAGCTTTTAACTAATCTACTAGTTTCTCAGACAAGTAACTTTTGTGAAAATTACAACCCATTCGTCTTTAGCAGTTACTGCTTTTTATTGACTTTGGAATAGTCAATCAGAACGGAATTAATGATAAAGCTGAAAGAAAATAGAGAATCAGAAAGGGAGGAATGAGATGATTTATTCTGTTTCAGTCCTAAAAGGCTGTCACGCAGCTCATATTCTTCTTTGTTGAAGGGGAAACAAACTCCTTGTCTTCCTCTCCCTTTTCTTCAACTTTTTGACTTTTTACATTTTCCTACTTCTTTGTATGGGCATAATGTGCGACCATATGATTTGAGCCAATTAATGGATTTCTTGGAATTGTTAGATAGAACAGTCTAGTAGTCTGTTTTTCTTTCTAAAGCTTTATGTTGTTTACGTAACCTTTTAGTACCTTGTTGGAACCCTTTTAATAAAACTTTTGCCTTATCAGAAAATTAAACATAACGCAGCTTATCTAGTGAAATTTTAGTGTTTTTTTTTTTAAGAATGAGAAACCATAACATGGCCTAATTGAACCGTTTCTGGTTATACCTCATGCGTTGAATTGCTACGTTTCATCATTTCTGAAGCTTCTCTTCCAGCTTAGTTATCCGTGACATACAAATTTCTTTAAAAATTTTAATTTTTCAAGTCAATGAATGTCTAGAGGTGAACCTTTTATTTATGGTACTCTATTGTTTTGTCTGATATCTGACAATGATCGGAAAACTCTAATAGTAAATGGATCTAATCTAAGAGACTGAAATTCTCGCCCTTGTGAGTTTCCTTAATCATTCTTAGAGGACTAGATTTTTATGCTTAAAAGAACAGTAACACAACTTTTTCTTGCCTCCAAAATTTAGGATCCATGATTGATGTTTTTTTCTTGAAAAGACATTAATTGGATACTAATTTTTATTGTGGTTGATTTTCAGGGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCC</genome_strand>
        <mrna_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295202" ref_strand="+" ref_description="SGN-E295202 [cLET-20-F12]">
      <seq>gcgatctcgccggcgctccggccatcattatcgtcggaaaatcttccattcttctcatttctctctctatctaagagtactcaggaggattgaaggtttaaggtgaccatggaagaaactggactgagaaatgtgggctccaactgctccatttctgaaatagatgattatgatctctctaagcttctaaacaagccaaggctaaacatagagaggaagagatcttttgatgagaggtcactcagtgagttgtccattggcctatctagaggtttagatcattatgaaagtgcctcacctggccaatcagtcttggacaccccagttgcatcagcccggaactcttttgagccccatccgatggttgctgaagcatgggatgctctacgccgcactatggttcattttcgtggtcaaccagtcggtacaatagcggcaattgaccatgcctctgaagaagtcctcaactatgatcaggtttttgttcgagattttgtgcctagtgctttggccttcctgatgaatggagagccagatatagtcaagaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69113" stop="66178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68813" g_stop="68739" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68738" i_stop="67237" i_length="1502">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67236" g_stop="66835" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="477" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66834" i_stop="66553" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66552" g_stop="66478" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="552" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E295202" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68813" e_stop="68739"/>
          <exon e_start="67236" e_stop="66835"/>
          <exon e_start="66552" e_stop="66478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATCTCGCCGGCGCTCCGGCCATCATCATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAGGTAGTCTCTCTTTCTCTCTCTTATACATATTTCTCTGCATATTTATCTTCTTCCTCTAAAAGCTTGTATTTTCTGCGTGTGTATTGTTGATTTTGTGCAAAATCAGCTCTAGATCTAATTTGCTTCTCAGAAAGCTCTTTTACTATGTGTTTAATTTATTTACATTATGTTATCTTCTTCATTATATTTGGATCTTAAGTTTGTAATATGCAGCTTGTTCTCTGAATTGGGATATGGAGATTTGATCTTTTGTATGAGCTTCCTTTGTAGAATCCAATGTTTTTGTTCTTTCTAAAATTAACATCATTCTATAGGAAAAGAAATCTGAACAGCTTGATTTATGGTAATAGTGGCAGTTCAATGTGTGTACTTCTTTTCTTTCTGGATAAGGTTATTTTGATTATGGGAATGGAATTACTAGTGACCTGCATTATTGCTTATTGGATACTGTAGTCTTTTTGGATAAGATTGAATAGTGAAATCCTTATTATTCTTACTTTGTTTCTCCCTTTGTATAATGGTTGGGAACTTGGATGATGGCTATTGTTTACCGACTCGCTTTTTGCTTTCAGTTGAGCCATAATGTTACAGAGATTCGTGTTCTGTACAATTTTCGTCCCGGGTTTTGATACTAAGTGATTTTCTGGACTTCCTGACCATCTATTTATGTGTGTGTACATATGTGCACCTAAATATTCCAACTTTATGTACATAAAAGCACCTTTTCCTTTTTATGCGAGATAATATTTGTGGGTTGAGAATTATCAAGTAATATAGATCGATATCAAGTTTGTGTTTTTATATCGGTCTGCAACTTGGATTGTAGTATAAAGGGGCTAATGCTTATGATTTCTAGTTATATGTGATTTTCTGAAGTTCCGTATATGTCTTTTGACATACTTGAGCGAATGTGCACACACATGTATGTATGTTTGCGTCTATGTATCTATTTGTGTGCCCTTAAATTACTTCTGAGTATTGAAAAAGTGGGTCCGGATGAACTGGAATGGATTCATATAGCCGATCTAACTAATTTGCCATTGGGCATAGTTAAGTGATTGATACAAATGCATGCTCACAAACACCAGTATTGTGTGTGTAAAGTTCCTTCTTTCAGTGCGACCCAGAGTGCTAGTGGGTTGACAGGTAGCTAATCCATCCCTTTCAATTTGTTTGTCTTACTTACCTTTTTAATCTGTTTTTTTTTTAAAAAATCCCTTTTTCCGTTTTCCGCAACTCCTTAGTTCTAACTTCCCACACAACATGTTTGAGACCACAAGATTAAAAGTCATTTTTGTACAATCTATATATATCTTTAATTTAAGATTACAAGATTCGAAAGTCTTCTTTACTTTCTTAAACTCAGGGCCTAGTCAATACTAGACAAAACAAATTGAACCGAAGGGTGCATTATTTTCCTAAGAAGAAATAACAATTTTGTATTTCTATATGGAGCTGCAACCTGTATTTTGTTCTTAAAGGTGTTATTGTTTATGATACAGAGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAGGTCAGTAATATGAAATCCAAGTATTACAGAATCTTGGTCCTCTTTATGATTTTGATTTAGTAATTTGCATAATATTGGTATCATATACTATGATCAGGTATGAATTTTTTGAACAAAAATGTGCGTTGATTATTGATGCCATACATATTAATGTTGGGATATTGTCATATTGATGCCGAAACTGGGTTTAGTTTGGAGTGAGGTACAGTGATGTGATAAGGAGTATAATAATATCTGTTTTATCAGATTATTTATCTAGTGAAGATTTCGTTTGGTGTGTAGGTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATAGTCAAGAACTTC</genome_strand>
        <mrna_strand>GCGATCTCGCCGGCGCTCCGGCCATCATTATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTGCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAG..........................................................................................................................................................................................................................................................................................GTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATAGTCAAGAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329919" ref_strand="+" ref_description="SGN-E329919 [cTOD-5-K3]">
      <seq>gcgctccggccatcatcatcgtcttaaaatcttccattcttctcatttggctctctgtctaagagtactcaggaggattgaaggtttaaggtgaccatggaagaaactggactgagaaatgtgggctccaactgctccatttctgaaatagatgattatgatctctctaagcttctaaacaagccaaggctaaacatagagaggaagagatcttttgatgagaggtcactcagtgagttgtccattggcctatctagaggtttagatcattatgaaagtgcctcacctggccaatcagtcttggacaccccagtttcatcagcccggaactcttttgagccccatccgatggttgctgaagcatgggatgctctacaccgcactatggttcattttcgaggtcaaccagaccgtacaatagcggcaattgaccatgcctctgaagaagtcctcaactatgatcacgtttttgttcgagattttgtgcctagagctttggccttcctgatgaatggagagccagatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69101" stop="66190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68801" g_stop="68739" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68738" i_stop="67237" i_length="1502">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67236" g_stop="66835" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="465" r_length="402" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66834" i_stop="66553" i_length="282">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66552" g_stop="66490" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="528" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E329919" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68801" e_stop="68739"/>
          <exon e_start="67236" e_stop="66835"/>
          <exon e_start="66552" e_stop="66490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTCCGGCCATCATCATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAGGTAGTCTCTCTTTCTCTCTCTTATACATATTTCTCTGCATATTTATCTTCTTCCTCTAAAAGCTTGTATTTTCTGCGTGTGTATTGTTGATTTTGTGCAAAATCAGCTCTAGATCTAATTTGCTTCTCAGAAAGCTCTTTTACTATGTGTTTAATTTATTTACATTATGTTATCTTCTTCATTATATTTGGATCTTAAGTTTGTAATATGCAGCTTGTTCTCTGAATTGGGATATGGAGATTTGATCTTTTGTATGAGCTTCCTTTGTAGAATCCAATGTTTTTGTTCTTTCTAAAATTAACATCATTCTATAGGAAAAGAAATCTGAACAGCTTGATTTATGGTAATAGTGGCAGTTCAATGTGTGTACTTCTTTTCTTTCTGGATAAGGTTATTTTGATTATGGGAATGGAATTACTAGTGACCTGCATTATTGCTTATTGGATACTGTAGTCTTTTTGGATAAGATTGAATAGTGAAATCCTTATTATTCTTACTTTGTTTCTCCCTTTGTATAATGGTTGGGAACTTGGATGATGGCTATTGTTTACCGACTCGCTTTTTGCTTTCAGTTGAGCCATAATGTTACAGAGATTCGTGTTCTGTACAATTTTCGTCCCGGGTTTTGATACTAAGTGATTTTCTGGACTTCCTGACCATCTATTTATGTGTGTGTACATATGTGCACCTAAATATTCCAACTTTATGTACATAAAAGCACCTTTTCCTTTTTATGCGAGATAATATTTGTGGGTTGAGAATTATCAAGTAATATAGATCGATATCAAGTTTGTGTTTTTATATCGGTCTGCAACTTGGATTGTAGTATAAAGGGGCTAATGCTTATGATTTCTAGTTATATGTGATTTTCTGAAGTTCCGTATATGTCTTTTGACATACTTGAGCGAATGTGCACACACATGTATGTATGTTTGCGTCTATGTATCTATTTGTGTGCCCTTAAATTACTTCTGAGTATTGAAAAAGTGGGTCCGGATGAACTGGAATGGATTCATATAGCCGATCTAACTAATTTGCCATTGGGCATAGTTAAGTGATTGATACAAATGCATGCTCACAAACACCAGTATTGTGTGTGTAAAGTTCCTTCTTTCAGTGCGACCCAGAGTGCTAGTGGGTTGACAGGTAGCTAATCCATCCCTTTCAATTTGTTTGTCTTACTTACCTTTTTAATCTGTTTTTTTTTTAAAAAATCCCTTTTTCCGTTTTCCGCAACTCCTTAGTTCTAACTTCCCACACAACATGTTTGAGACCACAAGATTAAAAGTCATTTTTGTACAATCTATATATATCTTTAATTTAAGATTACAAGATTCGAAAGTCTTCTTTACTTTCTTAAACTCAGGGCCTAGTCAATACTAGACAAAACAAATTGAACCGAAGGGTGCATTATTTTCCTAAGAAGAAATAACAATTTTGTATTTCTATATGGAGCTGCAACCTGTATTTTGTTCTTAAAGGTGTTATTGTTTATGATACAGAGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAGGTCAGTAATATGAAATCCAAGTATTACAGAATCTTGGTCCTCTTTATGATTTTGATTTAGTAATTTGCATAATATTGGTATCATATACTATGATCAGGTATGAATTTTTTGAACAAAAATGTGCGTTGATTATTGATGCCATACATATTAATGTTGGGATATTGTCATATTGATGCCGAAACTGGGTTTAGTTTGGAGTGAGGTACAGTGATGTGATAAGGAGTATAATAATATCTGTTTTATCAGATTATTTATCTAGTGAAGATTTCGTTTGGTGTGTAGGTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATA</genome_strand>
        <mrna_strand>GCGCTCCGGCCATCATCATCGTCTTAAAATCTTCCATTCTTCTCATTTGGCTCTCTGTCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACACCGCACTATGGTTCATTTTCGAGGTCAACCAGACCGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAC..........................................................................................................................................................................................................................................................................................GTTTTTGTTCGAGATTTTGTGCCTAGAGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341808" ref_strand="+" ref_description="SGN-E341808 [cTOF-9-K14]">
      <seq>ggccgggtgtatgctattttgggccgtcactgctcacaaaggggcatcggtggtccattaactggttatcgcccttacagattaccagaagagttccgtagagagagaaagagacgaagaatagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80613" stop="82844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80913" g_stop="81122" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="302" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="435" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E341808" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80913" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGGTGTATGCTATTTTGGGCCGTCA-TGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT</genome_strand>
        <mrna_strand>GGCCGGGTGTATGCTATTTTGGGCCGTCACTGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAATAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290201" ref_strand="+" ref_description="SGN-E290201 [cLET-5-C8]">
      <seq>agattaccagaagagttccgtatagagagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80690" stop="82807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80990" g_stop="81122" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="224" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82507" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="325" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E290201" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80990" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTG</genome_strand>
        <mrna_strand>AGATTACCAGAAGAGTTCCGTATAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308779" ref_strand="+" ref_description="SGN-E308779 [cLEZ-14-B13]">
      <seq>ccagaagagttccgtagagagagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80696" stop="84138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80996" g_stop="81122" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="218" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="351" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="421" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="482" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83929" g_stop="83934" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="488" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E308779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80996" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="83934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGA</genome_strand>
        <mrna_strand>CCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549257" ref_strand="+" ref_description="SGN-E549257 [TUS-68-M1]">
      <seq>tatagagagaaagagacgaagaagagagagaaaggtgacgactattcgtaaattcagctgcaatgacttgcttcgcttcacgtcagtgaatttggatcatcttactgaaactttcaacatgacattttatatgacttacatggaaagatggcgcgagattatttccatgttcgcaaaagctcccggcggccacatacaagggatacattatgggaaaagttgaggggcaaggtgaatcttggcatggacacgttactgcagtaactgtggctcctgaatatcggacgcagctattagtcaagaaattgatgtaccagctggaagaagtcagtgataaaatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgataagcttgattacgtagcatataggcgagttttacgctattactcatgggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaatagaagactatcatccctcttaaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80710" stop="84287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81010" g_stop="81122" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.757" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="207" r_length="95" r_score="0.879"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="340" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="410" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="471" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83929" g_stop="83987" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="530" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E549257" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81010" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="83987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGC-CG-GATTATTTCCATGTT-GCAAAAGCTCCCGGCGGCCACAT-CATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGA</genome_strand>
        <mrna_strand>TATAGAGAGAAAGAGACGAAGAAGAGAGAGAAAG-GTGACGACTATTCGTAAATTCAGCTGCAATGACTTGCTTCGCTTCACGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGACATTTTATATGACTTACATGGAAAGATGGCGCGAGATTATTTCCATGTTCGCAAAAGCTCCCGGCGGCCACATACAAGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAGGGGCAAGGTGAATCTTGGCATGGACACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGACGCAGCTATTAGTCAAGAAATTGATGTACCAGCTGGAAGAAGTCAGTGATAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGATAAG...............................................................................................CTTGATTACGTAGCATATAGGCGAGTTTTACGCTATTACTCATGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAATAGAAGACTATCATCCCTCTTAAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373077" ref_strand="+" ref_description="SGN-E373077 [TUS-32-G7]">
      <seq>agagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80715" stop="95610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81015" g_stop="81122" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="199" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="332" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="402" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="463" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83929" g_stop="84151" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="686" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84152" i_stop="84478" i_length="327">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84479" g_stop="84505" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="713" r_length="27" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E373077" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81015" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="84151"/>
          <exon e_start="84479" e_stop="84505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAACTTTTTCTGTAGTTTCTAAGTATGCAAATTATTTTCTTTTTAAAAATACTTAAATACACGATTAGATTTACAAAAAATTGACACTCAGAATTCGAACTAACAATGACAACAAATTCAATGTTATTCCATAAGTTAAAGTTTGGACCTACGTGGGCGTCAAGGGTTCATTTGAACCTCTATATATTTGTTCATATACTATTTTTCAACAACTTAAATCAAATGTGAGGACAACAACATAAAAATATACAAAAAT</genome_strand>
        <mrna_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTAA.......................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378775" ref_strand="+" ref_description="SGN-E378775 [TUS-32-G7]">
      <seq>agagaaagagacgaagaagagagagaaagcatgaccacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80715" stop="84450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81015" g_stop="81122" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="199" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="332" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="402" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="463" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83929" g_stop="84153" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="688" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E378775" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81015" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="84153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGT</genome_strand>
        <mrna_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACCACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292676" ref_strand="+" ref_description="SGN-E292676 [cLET-11-I22]">
      <seq>agagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80715" stop="84103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81015" g_stop="81122" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="199" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="332" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="402" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83803" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="433" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E292676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81015" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTAC</genome_strand>
        <mrna_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290094" ref_strand="+" ref_description="SGN-E290094 [cLET-5-F19]">
      <seq>agagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80715" stop="81772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81015" g_stop="81122" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="199" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E290094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81015" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA</genome_strand>
        <mrna_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324927" ref_strand="+" ref_description="SGN-E324927 [cTOC-11-C8]">
      <seq>agaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80717" stop="84318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81017" g_stop="81122" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="330" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="400" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="461" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83929" g_stop="84018" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="551" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E324927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81017" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="84018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACT</genome_strand>
        <mrna_strand>AGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325770" ref_strand="+" ref_description="SGN-E325770 [cTOC-12-A11]">
      <seq>aagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgccatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80720" stop="81748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81020" g_stop="81122" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81448" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="172" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E325770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81020" e_stop="81122"/>
          <exon e_start="81380" e_stop="81448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCC</genome_strand>
        <mrna_strand>AAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCCATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373076" ref_strand="+" ref_description="SGN-E373076 [TUS-32-G7](-)">
      <seq>aagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccccatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaaaaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaaccccccagctataaaaatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaaaatggtttggatatgagaaaggcactatcgcgagatgtaaaaaaaaagtttatcatcccttttaaacgaccggtaactccaaatgaattggagtatgactgagtcggtaagagttgttaccccatgtaattttatctttcaagaagctaagtttagggtatcgacaagtcttgtctaaaaatgtatgagatgaagagtttgggtttttatctatagtactgttgtgccctttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80741" stop="84449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81041" g_stop="81122" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="173" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="306" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="376" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="437" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83929" g_stop="84146" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="655" r_length="218" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="687"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E373076" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81041" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="84146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCC</genome_strand>
        <mrna_strand>AAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCCCATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAAAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACCCCCCAGCTATAAAAATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAAATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAAAAAAAAAGTTTATCATCCCTTTTAAACGACCGGTAACTCCAAATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATTTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAAAAATGTATGAGATGAAGAGTTTGGGTTTTTATCTATAGTACTGTTGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295016" ref_strand="+" ref_description="SGN-E295016 [cLET-40-A13]">
      <seq>ggatcccccgggctgcaagcgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcacggtgaatcttggcatggtcacgttactgcagttactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaagggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80743" stop="84273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81050" g_stop="81122" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="93" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="184" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="317" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="387" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="448" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83929" g_stop="83973" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="493" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E295016" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81050" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="83973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCA</genome_strand>
        <mrna_strand>GACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCACGGTGAATCTTGGCATGGTCACGTTACTGCAGTTACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAAGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545744" ref_strand="+" ref_description="SGN-E545744 [TUS-68-M1](-)">
      <seq>gaggcagcaattagccaagaaattgatgtgccccctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttaattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcctccctcttaaacgaccggtaactccagatgaattggagtatgtctgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgtcaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgccgcgccattatgtttaagaaccaagtgctagaatttctggccttgtgtatttgcttgcatgccatatgttcttttaatattttaaattgttaaatttttgtgacttaaaaaaaagaaaaaaaaaaaactcgaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82183" stop="84547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82483" g_stop="82539" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="127" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="188" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83929" g_stop="84246" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="506" r_length="318" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="527"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E545744" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82483" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="84246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTT</genome_strand>
        <mrna_strand>GAGGCAGCAATTAGCCAAGAAATTGATGTGCCCCCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTAATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCCTCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGTCTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGTCAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGCCGCGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236845" ref_strand="+" ref_description="SGN-E236845 [cLEL-7-N12](-)">
      <seq>gcttgattacgtagaatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggttaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattatgtttaagaaccaagtgctagaatttctggccttgtgtatttgcttgcatgccatatgttcttttaatattttaaattgttaaatttttgtgacttattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83472" stop="84552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83772" g_stop="83833" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83929" g_stop="84252" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="387" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="402"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E236845" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83772" e_stop="83833"/>
          <exon e_start="83929" e_stop="84252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGG-TAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</genome_strand>
        <mrna_strand>GCTTGATTACGTAGAATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237022" ref_strand="+" ref_description="SGN-E237022 [cLEL-7-N12](-)">
      <seq>tgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattatgtttaagaaccaagtgctagaatttctggccttgtgtatttgcttgcatgccatatgttcttttaatattttaaattgttaaatttttgtgacttattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83475" stop="84552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83775" g_stop="83833" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83929" g_stop="84252" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="383" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="384" polyA_stop="398"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E237022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83775" e_stop="83833"/>
          <exon e_start="83929" e_stop="84252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</genome_strand>
        <mrna_strand>TGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543618" ref_strand="+" ref_description="SGN-E543618 [TUS-65-I11]">
      <seq>atctaaacagtatgcttatattagtcttccatgacaatattaggtcgaacaatcaaacaattttactaatctaaccaccggtagatgaaaactgccccttcaagactaccaattatcaatttcagatcgattattttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttggttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84497" stop="88150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84797" g_stop="85525" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87797" g_stop="87850" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="784" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E543618" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84797" e_stop="85525"/>
          <exon e_start="87797" e_stop="87850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTT-GTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAG</genome_strand>
        <mrna_strand>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304538" ref_strand="+" ref_description="SGN-E304538 [cLEX-11-I22]">
      <seq>tctaaacagtatgcttatattagtcttccatgacaatattaggtcgaacaatcaaacaattttactaatctaaccaccggtagatgaaaactgccccttcaagactaccaattatcaatttcagatcgattattttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84498" stop="85633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84798" g_stop="85333" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E304538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84798" e_stop="85333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGAT</genome_strand>
        <mrna_strand>TCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744710" ref_strand="+" ref_description="SGN-E744710 [GI|18477219]">
      <seq>taaacagtatgcttatattagtcttccatgacaatattaggtcgaacaatcaaacaattttactaatctaaccaccggtagatgaaaactgccccttcaagactaccaattatcaatttcagatcgattattttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcagaagacgatgtccagtcaacctatgcgggcgcactttttcataacaatcggaattatcacctttctccttataagaacaatgatactcttgtttactggtcttcatcacgttgtcttcctcaaaggaaccagcttgccaaacgtctactcagcttgctaccctcccattcatttggcaagtgcctgaacaatgttggaggtctagacaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattgcgcaatgtcacattacaagtttgtccttgcgattgagaacaccaagacagaaagttatgtaacagagaagttattttacgcactggactctggtgcagtccccatttattttggtgccccgaatgtctgggactttgtacctccacattcaataattgatggaagcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84500" stop="89125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84800" g_stop="85525" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87797" g_stop="87970" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="900" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87971" i_stop="88095" i_length="125">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88096" g_stop="88825" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="901" r_stop="1630" r_length="730" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E744710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84800" e_stop="85525"/>
          <exon e_start="87797" e_stop="87970"/>
          <exon e_start="88096" e_stop="88825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAA</genome_strand>
        <mrna_strand>TAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT.............................................................................................................................GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700190" ref_strand="+" ref_description="SGN-E700190 [FA12BF04]">
      <seq>attttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaaaaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcaaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcaaaagacgatgtccagtcaacctatgcgggcgcactttttcataacaatcggaattatcacctttctccttataaaaacaatgatactcttgtttactggccttcatcacgttgtcttcctcaaaggaaccagcttgccaaacgtctactcagcttgctaccctcccattcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84629" stop="88488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84929" g_stop="85525" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87797" g_stop="87970" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="771" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87971" i_stop="88095" i_length="125">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88096" g_stop="88188" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="864" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E700190" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84929" e_stop="85525"/>
          <exon e_start="87797" e_stop="87970"/>
          <exon e_start="88096" e_stop="88188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTT</genome_strand>
        <mrna_strand>ATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAAAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCAAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAAAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAAAACAAT.............................................................................................................................GATACTCTTGTTTACTGGCCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211584" ref_strand="+" ref_description="SGN-E211584 [cLEC-67-A12]">
      <seq>ctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84648" stop="88142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84948" g_stop="85525" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87797" g_stop="87842" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="625" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E211584" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84948" e_stop="85525"/>
          <exon e_start="87797" e_stop="87842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAG-AAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTG</genome_strand>
        <mrna_strand>CTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214628" ref_strand="+" ref_description="SGN-E214628 [cLEC-79-O19]">
      <seq>tgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcagaagacgatgtccagtcaacctatgcgggcgcactttttcataacaatcggaattatcacctttctccttataagaacaatgatactcttgtttactggtcttcatcacgttgtcttcctcaaaggaaccagcttgccaaacgtctactcagcttgctaccctcccattcatttggcaagtgcctgaacaaatgttggaggtctagacaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84944" stop="88595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85244" g_stop="85525" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87797" g_stop="87970" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="456" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87971" i_stop="88095" i_length="125">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88096" g_stop="88295" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="657" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E214628" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85244" e_stop="85525"/>
          <exon e_start="87797" e_stop="87970"/>
          <exon e_start="88096" e_stop="88295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAAC-AATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTG</genome_strand>
        <mrna_strand>TGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT.............................................................................................................................GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308119" ref_strand="+" ref_description="SGN-E308119 [cLEY-14-I21]">
      <seq>tcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactccttctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcagaagacgatgttcagtcaacctatgcgggcgcactttttcataacaatcggtattatcacctttctccttataagaacaatgatactcttgtttactggtcttcatcacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85001" stop="88427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85301" g_stop="85525" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87797" g_stop="87970" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="399" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87971" i_stop="88095" i_length="125">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88096" g_stop="88127" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="431" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E308119" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85301" e_stop="85525"/>
          <exon e_start="87797" e_stop="87970"/>
          <exon e_start="88096" e_stop="88127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTG</genome_strand>
        <mrna_strand>TCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTTCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTTCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGTATTATCACCTTTCTCCTTATAAGAACAAT.............................................................................................................................GATACTCTTGTTTACTGGTCTTCATCACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273200" ref_strand="+" ref_description="SGN-E273200 [cLEM-24-P2]">
      <seq>tcaaaggaacccagcttgccaaacgtctacctcagcttgctacccctcccattcatttggcaagtgcctgaacaatgttggaggtctagaccaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattgcgcaatgtcacattacaagtttgtccttgcgattgagaacaccaagacagaaagttatgtaacagagaagttattttacgcactggactctggtgcagtccccatttattttggtgccccgaatgtctgggactttgtacctccacattcaataattgatggaagcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87834" stop="89008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88134" g_stop="88708" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E273200" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88134" e_stop="88708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGAA-CCAGCTTGCCAAACGTCTA-CTCAGCTTGCTA-CCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGA-CAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTG</genome_strand>
        <mrna_strand>TCAAAGGAACCCAGCTTGCCAAACGTCTACCTCAGCTTGCTACCCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACCAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543617" ref_strand="+" ref_description="SGN-E543617 [TUS-65-I11](-)">
      <seq>ctcccattcatttggcaagtgcctgaacaatgttggaggtctagacaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattgcgcaatgtcacattacaagtttgtccttgcgattgagaaccccaagccagaaagttatgtaccagagaagttattttacgcactggactctggtgcagtccccatttattttggtgccccgaatgtctgggactttgtacctccacattcaataattgatggaagcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtcccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggatcccttcccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagctttttgactattcaccagcaaagctccagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaacaaaattgggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87876" stop="89137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88176" g_stop="88836" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="707"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E543617" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88176" e_stop="88836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAAATTGAGC</genome_strand>
        <mrna_strand>CTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACCCCAAGCCAGAAAGTTATGTACCAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTCCCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATCCCTTCCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCTTTTTGACTATTCACCAGCAAAGCTCCAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAAATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553136" ref_strand="+" ref_description="SGN-E553136 [cTSB-1-L19]">
      <seq>agcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88159" stop="89130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88459" g_stop="88829" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="395"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E553136" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88459" e_stop="88829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</genome_strand>
        <mrna_strand>AGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553942" ref_strand="+" ref_description="SGN-E553942 [cTSC-2-L19]">
      <seq>agcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88159" stop="89130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88459" g_stop="88829" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="394"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E553942" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88459" e_stop="88829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</genome_strand>
        <mrna_strand>AGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217434" ref_strand="+" ref_description="SGN-E217434 [cLEL-21-N5](-)">
      <seq>gttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88195" stop="89130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88495" g_stop="88829" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="346"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E217434" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88495" e_stop="88829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</genome_strand>
        <mrna_strand>GTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355524" ref_strand="-" ref_description="SGN-E355524 [cTOS-25-K16]">
      <seq>aaacctattcacaaatgatatatccaattcctgataggagcttgtggaatgaggctggggagggtacagacggtgggggagcaaatgttgatattataatttgaccaccaaaaacccgacgtcctcctggcaggcccaaaaagaaggttcttcgcatagagagtttcaagcgtccaaagagagtcgttcaatgtggtcgatgccatatgttgggacattttcagaaaaaatgctcgttgcctagttaaatccttggttagttgccagctttctttgctcatgccgaaaactttcattaaagagtctcaagctgtatgtattttagtaatggcttagtcatgagattgttacttggcctttgccttatcagttttgcagttgtctttgaatatatcaggaacatattgtgtaccttgtacttcataatactatatggctaattgagttcccatcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90126" stop="89071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89826" g_stop="89372" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="488"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E355524" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355524" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89826" e_stop="89372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTATTCACAAATGATATATCCAATTCCTGATAGGAGCTTGTGGAATGAGGCTGGGGAGGGTACAGACGGTGGGGGAGCAAATGTTGATATTATAATTCGACCACCAAAAACCCGACGTCCTCCTGGCAGGCCCAAAAAGAAGGTTCTTCGCATAGAGAGTTTCAAGCGTCCAAAGAGAGTCGTTCAATGTGGTCGATGCCATATGTTGGGACATTCTCAGAAAAAATGCTCGTTGCCTAGTTAAATCCTTGGTTAGTTGCCAGCTTTCTTTGCTCATGCCGAAAACTTTCATTAAAGAGTCTCAAGCTGTATGTATTTTAGTAATGGCTTAGTCATGAGATTGTTACTTGGCCTCTGCCTTATCAGTTCTGCAGTTGTCTTTGAATATATCAGGAACATATTGTGTACCTTGTACTTCATAATACTATATGGCTAATTGAGTTCCCATCGA</genome_strand>
        <mrna_strand>AAACCTATTCACAAATGATATATCCAATTCCTGATAGGAGCTTGTGGAATGAGGCTGGGGAGGGTACAGACGGTGGGGGAGCAAATGTTGATATTATAATTTGACCACCAAAAACCCGACGTCCTCCTGGCAGGCCCAAAAAGAAGGTTCTTCGCATAGAGAGTTTCAAGCGTCCAAAGAGAGTCGTTCAATGTGGTCGATGCCATATGTTGGGACATTTTCAGAAAAAATGCTCGTTGCCTAGTTAAATCCTTGGTTAGTTGCCAGCTTTCTTTGCTCATGCCGAAAACTTTCATTAAAGAGTCTCAAGCTGTATGTATTTTAGTAATGGCTTAGTCATGAGATTGTTACTTGGCCTTTGCCTTATCAGTTTTGCAGTTGTCTTTGAATATATCAGGAACATATTGTGTACCTTGTACTTCATAATACTATATGGCTAATTGAGTTCCCATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706915" ref_strand="+" ref_description="SGN-E706915 [FA31CB09]">
      <seq>gcaagctgaaaaaattatggaaaattgagctgtttcagaataagttgacaggggaacttcctgtagaactggcagagctctctcttttgcaggaatttgatatctctagcaaccatatgtatgggaagctgcctccagaaattgggaacctgaagaagttaacagtttttcatgtattcatgaataacttctctggtgaaattcctcctggttttggagatatgcagcatcttaatggcttttccgtgtacaggaacaatttttctggggcatttccagcaaatcttggtcggttttcgcccctgaatagcatagacatatctgaaaacaagtttactggtggattcccaaagtacttgtgccaaaatgggaacctgcagtttttgctagctattgagaacagtttctcaggggagtttccgagtacttactcgtcgtgcaagcctttacagagattgagggtcagtaagaatcaactttctgggaaaattcccagtgatgtatggggacttccaaatgtactgatggtggatttcagtgataacgaattcagtggaactatgtccccggaaattggggctgctactaccctgaatcagttggtattatcaaataacagattttcaggtgagcttccaaaagaacttgggaaactcccacagttggaaaggctttacttggataacaataacttctcgggtgcaataccttctgaacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105826" stop="107146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106126" g_stop="106846" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E706915" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106126" e_stop="106846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCTGAAAAAATTATGGAAAATTGAGCTGTTTCAGAATAAGTTGACAGGGGAACTTCCTGTAGAACTGGCAGAGCTCTCTCTTTTGCAGGAATTTGATATCTCTAGCAACCATATGTATGGGAAGCTGCCTCCAGAAATTGGGAACCTGAAGAAGTTAACAGTTTTTCATGTATTCATGAATAACTTCTCTGGTGAAATTCCTCCTGGTTTTGGAGATATGCAGCATCTTAATGGCTTTTCCGTGTACAGGAACAATTTTTCTGGGGCATTTCCAGCAAATCTTGGTCGGTTTTCGCCCCTGAATAGCATAGACATATCTGAAAACAAGTTTACTGGTGGATTCCCAAAGTACTTGTGCCAAAATGGGAACCTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCGAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGG</genome_strand>
        <mrna_strand>GCAAGCTGAAAAAATTATGGAAAATTGAGCTGTTTCAGAATAAGTTGACAGGGGAACTTCCTGTAGAACTGGCAGAGCTCTCTCTTTTGCAGGAATTTGATATCTCTAGCAACCATATGTATGGGAAGCTGCCTCCAGAAATTGGGAACCTGAAGAAGTTAACAGTTTTTCATGTATTCATGAATAACTTCTCTGGTGAAATTCCTCCTGGTTTTGGAGATATGCAGCATCTTAATGGCTTTTCCGTGTACAGGAACAATTTTTCTGGGGCATTTCCAGCAAATCTTGGTCGGTTTTCGCCCCTGAATAGCATAGACATATCTGAAAACAAGTTTACTGGTGGATTCCCAAAGTACTTGTGCCAAAATGGGAACCTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCGAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTACCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCCCACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261075" ref_strand="+" ref_description="SGN-E261075 [cLEG-65-G15]">
      <seq>gagtacttactcgtcgtgcaagcctttacagagattgagggtcagtaagaatcaactttctgggaaaattcccagtgatgtatggggacttccaaatgtactgatggtggatttcagtgataacgaattcagtggaactatgtccccggaaattggggctgctactagcctgaatcagttggtattatcaaataacagattttcaggtgagcttccaaaagaacttgggaaactcacacagttggaaaggctttacttggataacaataacttctcgggtgcaataccttctgaacttggaaaactaaagcaaatttcatctttgcatttggagaaaaactcattctccgggactatcccatcagaattgggtgaattttctaggcttgcagacctgaatcttgcttcaaatcttcttacaggtagcattcccaattccttatcaataatgacctctttgaactctctgaatctttcacacaacagactcactggtacaataccaactagcttggacaatctgaagctgtcttcattggatctctctaacaaccagctatcaggagaagtatcattagatcttttaacgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106247" stop="107438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106547" g_stop="107138" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E261075" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106547" e_stop="107138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTTCACACAACAGACTCACTGGTACAATACCAACTAGCTTGGACAATCTGAAGCTGTCTTCATTGGATCTCTCTAACAACCAGCTATCAGGAGAGGTATCATTAGATCTTTTAACGCTG</genome_strand>
        <mrna_strand>GAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTTCACACAACAGACTCACTGGTACAATACCAACTAGCTTGGACAATCTGAAGCTGTCTTCATTGGATCTCTCTAACAACCAGCTATCAGGAGAAGTATCATTAGATCTTTTAACGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551523" ref_strand="+" ref_description="SGN-E551523 [TUS-55-M5]">
      <seq>ggtcaataagaatcaactttctgggaaaattcccagtgatgtatggggacttccaaatgtactgatggtggatttcagtgataacgaattcagtggaactatgtccccggaaattggggctgctactagcctgaatcagttggtattatcaaataacagattttcaggtgagcttccaaaagaacttgggaaactcacacagttggaaaggctttacttggataacaataacttctcgggtgcaataccttctgaacttggaaaactaaagcaaatttcatctttgcatttggagaaaaactcattctccgggactatcccatcagaattgggtgaattttctaggcttgcagacctgaatcttgcttcaaatcttcttacaggtagcattcccaattccttatcaataatgacctctttgaactctctgaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106286" stop="107322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106586" g_stop="107022" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E551523" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106586" e_stop="107022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTT</genome_strand>
        <mrna_strand>GGTCAATAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689024" ref_strand="+" ref_description="SGN-E689024 [t3_tus_55_M05]">
      <seq>ggtcaataagaatcaactttctgggaaaattcccagtgatgtatggggacttccaaatgtactgatggtggatttcagtgataacgaattcagtggaactatgtccccggaaattggggctgctactagcctgaatcagttggtattatcaaataacagattttcaggtgagcttccaaaagaacttgggaaactcacacagttggaaaggctttacttggataacaataacttctcgggtgcaataccttctgaacttggaaaactaaagcaaatttcatctttgcatttggagaaaaactcattctccgggactatcccatcagaattgggtgaattttctaggcttgcagacctgaatcttgcttcaaatcttcttacaggtagcattcccaattccttatcaataatgacctctttgaactctctgaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106286" stop="107322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106586" g_stop="107022" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E689024" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106586" e_stop="107022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTT</genome_strand>
        <mrna_strand>GGTCAATAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318172" ref_strand="+" ref_description="SGN-E318172 [cTOA-29-E18]">
      <seq>actcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctctcatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcccagctcgctagtgatattgttagcttcgagtttacacctatccggctttaagacgtcattagggtgtaagacctgcttatttatgtactcaacatatctcatgtatttttgcctatttgggactcttaatcatggacataaatacccagatttctgattaatccaacttctgaagtttccaatcacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110080" stop="108308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109780" g_stop="109724" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109111" g_stop="108608" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="561" r_length="504" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E318172" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109780" e_stop="109724"/>
          <exon e_start="109111" e_stop="108608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAGCAGAAAAAAA</genome_strand>
        <mrna_strand>ACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTCATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691324" ref_strand="+" ref_description="SGN-E691324 [LH_Ea05N02]">
      <seq>tcgttttaaagaggaggtatttgctcaaattgatggtgcattcattcaacttcttgaagcaaaggattgaagatttggaaccgtaatgtcatagagagcaggaaaaatctgcagaacgtaccatgtaatactgaggaggatcatcgaagacaagagtcacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcctaactcgctagtgatattgttagctttgagcttacacctatgcggctttaagatgcgtcattagggtgtaagacctgcttatttatgtactcaacatatctcatgtatttttgcctatttgggactcttaatcatggacataaatacccagatttctgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109400" stop="108345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109101" g_stop="108634" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E691324" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109101" e_stop="108634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGA--CGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTG</genome_strand>
        <mrna_strand>TCGTTT-TAAAGAGGAGGTATTTGCTCAAATTGATGGTGCATTCATTCAACTTCTTGAAGCAAAGGATTGAAGATTTGGAACCGTAATGTCATAGAGAGCAGGAAAAATCTGCAGAACGTACCATGTAATACTGAGGAGGATCATCGAAGAC--AAGAGTCACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCTAACTCGCTAGTGATATTGTTAGCTTTGAGCTTACACCTATGCGGCTTTAAGATGCGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695164" ref_strand="+" ref_description="SGN-E695164 [LH_Ea05N02](-)">
      <seq>ttctaaagaggaggtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggattgaagatttggatccgtaatgtcatagagagcaggaaaaatctgcagaatgtaccatgtaatactgaggaggatcatcgaagacaagagtcacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatttatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcctaactcgctagtgatattgttagctttgagcttacacctatgcggctttaagatgcgtcattagggtgtaagacctgcttatttatgaagggaacatatctcatgtatttttgcctatttgggactttaatggatggacataaatacccagatttctgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109397" stop="108345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109097" g_stop="108634" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E695164" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109097" e_stop="108634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGA--CGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTG</genome_strand>
        <mrna_strand>TTCTAAAGAGGAGGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGATTGAAGATTTGGATCCGTAATGTCATAGAGAGCAGGAAAAATCTGCAGAATGTACCATGTAATACTGAGGAGGATCATCGAAGAC--AAGAGTCACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATTTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCTAACTCGCTAGTGATATTGTTAGCTTTGAGCTTACACCTATGCGGCTTTAAGATGCGTCATTAGGGTGTAAGACCTGCTTATTTATGAAGGGAACATATCTCATGTATTTTTGCCTATTTGGGACTTTAATGGATGGACATAAATACCCAGATTTCTGATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370115" ref_strand="+" ref_description="SGN-E370115 [TUS-26-J12](-)">
      <seq>tcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcccagctcgctagtgatattgttagcttcgagtttacacctatccggctttaagacgtcattagggtgtaagacctgcttatttatgtactcaacatatctcatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111303" stop="108401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111003" g_stop="110937" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="214" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="289" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109111" g_stop="108691" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="710" r_length="421" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E370115" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111003" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="108691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTA</genome_strand>
        <mrna_strand>TCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369887" ref_strand="+" ref_description="SGN-E369887 [TUS-26-J11](-)">
      <seq>caaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcccagctcgctagtgatattgttagcttcgagtttacacctatccggctttaagacgtcattagggtgtaagacctgcttatttatgtactcaacatatctcatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109375" stop="108401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109075" g_stop="108691" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E369887" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109075" e_stop="108691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTA</genome_strand>
        <mrna_strand>CAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390371" ref_strand="+" ref_description="SGN-E390371 [TUS-41-E21](-)">
      <seq>aaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgtgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111517" stop="108510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111217" g_stop="111182" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="165" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="312" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="387" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109111" g_stop="108809" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="689" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="700"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E390371" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111217" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="108809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAG</genome_strand>
        <mrna_strand>AAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTG-TGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396138" ref_strand="+" ref_description="SGN-E396138 [TUS-17-E21](-)">
      <seq>caagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcactgaatcagattcaaagtttactacaaaacttgttttgttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111287" stop="108510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110987" g_stop="110937" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="198" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="273" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109111" g_stop="108809" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="576" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="593"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E396138" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110987" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="108809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAG</genome_strand>
        <mrna_strand>CAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCACTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745308" ref_strand="+" ref_description="SGN-E745308 [GI|47105770]">
      <seq>ggtaaaagaaaaaaagaaaaacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113367" stop="108525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113068" g_stop="112811" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="357" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="486" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="615" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="762" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="837" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109111" g_stop="108825" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="1124" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1125" polyA_stop="1139"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E745308" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1124</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113068" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="108825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAA</genome_strand>
        <mrna_strand>GGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228848" ref_strand="+" ref_description="SGN-E228848 [cLEL-29-E3](-)">
      <seq>ctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgggtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaaaaggaagtatttgctccaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcataaagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaaccatctatgtggatattccttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110529" stop="108544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110229" g_stop="110189" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="116" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109111" g_stop="108833" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="395" r_length="279" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E228848" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110229" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="108833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTA</genome_strand>
        <mrna_strand>CTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGGGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAAAGGAAGTATTTGCTCCAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAAAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACCATCTATGTGGATATTCCTTGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228978" ref_strand="+" ref_description="SGN-E228978 [cLEL-29-J22](-)">
      <seq>atcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110533" stop="108544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110233" g_stop="110189" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109111" g_stop="108835" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="397" r_length="277" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E228978" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110233" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="108835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTT</genome_strand>
        <mrna_strand>ATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228882" ref_strand="+" ref_description="SGN-E228882 [cLEL-29-J22](-)">
      <seq>tgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaaaaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110085" stop="108544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109785" g_stop="109724" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109111" g_stop="108835" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="339" r_length="277" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E228882" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109785" e_stop="109724"/>
          <exon e_start="109111" e_stop="108835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTT</genome_strand>
        <mrna_strand>TGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAAAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228944" ref_strand="+" ref_description="SGN-E228944 [cLEL-29-E3](-)">
      <seq>cgtagactagatcctgtactgggagaatataccatttaaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatactctctgaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110599" stop="108544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110299" g_stop="110189" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="185" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109111" g_stop="108855" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="442" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="463"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E228944" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110299" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="108855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTC</genome_strand>
        <mrna_strand>CGTAGACTAGATCCTGT-ACTGGGAGAATATACCATTTAAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704965" ref_strand="+" ref_description="SGN-E704965 [FA25DB04]">
      <seq>ctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113338" stop="108738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113038" g_stop="112811" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="327" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="456" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="585" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="732" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="807" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109111" g_stop="109038" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="881" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E704965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113038" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="109038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAA</genome_strand>
        <mrna_strand>CTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707434" ref_strand="+" ref_description="SGN-E707434 [FA33AA05]">
      <seq>cacttgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaactttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113347" stop="108745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113047" g_stop="112811" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="595" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="742" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="817" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109111" g_stop="109045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="885" r_length="68" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E707434" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113047" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="109045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAC-TGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAAC-TTCTTG</genome_strand>
        <mrna_strand>CACTTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260683" ref_strand="+" ref_description="SGN-E260683 [cLEG-54-M16]">
      <seq>tcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcnaattgatggtgcattaactcaacttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113239" stop="108745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112939" g_stop="112811" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="228" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="357" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="486" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="633" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="708" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109111" g_stop="109045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="775" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E260683" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112939" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="109045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTG</genome_strand>
        <mrna_strand>TCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCNAATTGATGGTGCATTAACTCAACTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261015" ref_strand="+" ref_description="SGN-E261015 [cLEG-55-G16]">
      <seq>caaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtattctttttgccacgaatgtggtgcagttgcttcactcgggaatgcagattgaaacactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113271" stop="109359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112971" g_stop="112811" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="260" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="389" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="518" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="665" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109798" g_stop="109659" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="805" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E261015" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112971" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATC</genome_strand>
        <mrna_strand>CAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACGAATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704951" ref_strand="+" ref_description="SGN-E704951 [FA25DA01]">
      <seq>ccctttatttagcacggagcagaagcgccatggcttcgtgctgctcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatggggaatcagttctctcaatgtacaaagatactatattccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113338" stop="109423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113040" g_stop="112811" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="329" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="458" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="587" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="734" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109798" g_stop="109723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="810" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E704951" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113040" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGG</genome_strand>
        <mrna_strand>CCCTTTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGCTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGGGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242466" ref_strand="+" ref_description="SGN-E242466 [cLED-30-A19]">
      <seq>gggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112748" stop="109426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112448" g_stop="112397" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="181" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="310" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="457" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109798" g_stop="109726" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="530" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E242466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112448" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCC</genome_strand>
        <mrna_strand>GGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343131" ref_strand="+" ref_description="SGN-E343131 [cTOF-17-G22]">
      <seq>cacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccattttgagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113328" stop="109899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113028" g_stop="112811" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="317" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="446" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="575" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110199" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="712" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E343131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113028" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATAC</genome_strand>
        <mrna_strand>CACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTTGAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328867" ref_strand="+" ref_description="SGN-E328867 [cTOC-24-C18]">
      <seq>tctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113337" stop="109902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113037" g_stop="112811" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="326" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="455" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="584" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110202" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="718" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E328867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113037" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGA</genome_strand>
        <mrna_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699976" ref_strand="+" ref_description="SGN-E699976 [FA11DA10]">
      <seq>ctttaaagagatctctatttagcacggagcagaagcgccatggcttcgggctgtacattgagctgctcaacagtctcttcaaagcctaacaagccttactcatcaacggtttcttcttctcttgagctcccctttacgtcccagttgacattttctaagaaatattcactttattccaatcataccattctccaaactcaatgccggaaaacccaatcaccggattgacccactttcttggatgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaataagtacgatttggtgcatattgcgtgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacagttggtaccaaacgagatagttgtaacaatggtcaaagagaggttgatgtgtccagactctcaagaaaagggtgggctttaatatggatatcctcggaacgtgtctcgagcaatagctctcgaagagttccagccaaaccttttcattcttctggaagtacctgaaaagatacttgttgagagagtggttggccgtatactagatcctgtaagtgggagaatataccattagaagtattctccgccagagaccgatgaaatcgctgcgaggtttacccagcgctttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113343" stop="109903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113050" g_stop="112811" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="339" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="469" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="598" r_length="129" r_score="0.930"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110203" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="731" r_length="133" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E699976" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113050" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGC-TGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATG</genome_strand>
        <mrna_strand>CTTTAAAGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGGGCTGTACATTGAGCTGCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCAACGGTTTCTTCTTCTCTTGAGCTCCCCTTTACGTCCCAGTTGACATTTTCTAAGAAATATTCACTTTATTCCAATCATACCATTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGACCCACTTTCTTG...........................................................................................................................................................................................................................................................................................................................GATGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCGTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAGTTGGTACCAAACGAGATAGTTGTAACA....................................................................................................................ATGGTCAAAGAGAGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTGGGCTTTAATATGGATATCCTCGGAACGTGTCTCGAGCAATAGCTCTCGAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAAAGATACTTGTTGAGAGAGTGGTTGGCCGTATACTAGATCCTGTAAGTGGGAGAATATACCATTAGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCGAGGTTTACCCAGCGCTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345487" ref_strand="+" ref_description="SGN-E345487 [cTOF-13-P14]">
      <seq>tctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctncgccagagaccgatgaaatcgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113337" stop="109926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113037" g_stop="112811" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="326" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="455" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="584" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110226" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="694" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E345487" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113037" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGC</genome_strand>
        <mrna_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTNCGCCAGAGACCGATGAAATCGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369888" ref_strand="+" ref_description="SGN-E369888 [TUS-26-J11]">
      <seq>aaaagaaaaacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcagagagttccagccaaaccttttcattcttctggaagtccctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaaataccatttgaagtattctccgccagagaccgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113357" stop="109936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113057" g_stop="112811" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="346" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="475" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="604" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110236" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="703" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E369888" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113057" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATG</genome_strand>
        <mrna_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAGAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAA-ATACCATTTGAAGTATTCTCCGCCAGAGACCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271659" ref_strand="+" ref_description="SGN-E271659 [cLEM-23-C16]">
      <seq>aatttcttcttctcttgagctcccctttacttgccaggtgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccactttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgaatactagatcctgtaactgggagaatataccatttgaagtattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113243" stop="109952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112943" g_stop="112811" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="232" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="361" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="490" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110252" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="574" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E271659" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112943" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCT</genome_strand>
        <mrna_strand>AATTTCTTCTTCTCTTGAGCTCCCCTTTACTTGCCAGGTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCACTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGAATACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328991" ref_strand="+" ref_description="SGN-E328991 [cTOC-24-G15]">
      <seq>actgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaaagtactgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113346" stop="109978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113046" g_stop="112811" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="335" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="464" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="593" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110278" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="651" r_length="58" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E328991" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113046" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTG</genome_strand>
        <mrna_strand>ACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390158" ref_strand="+" ref_description="SGN-E390158 [TUS-41-E21]">
      <seq>aacactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113349" stop="109997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113049" g_stop="112811" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="338" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="467" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="596" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110297" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="635" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E390158" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113049" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGT</genome_strand>
        <mrna_strand>AACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390101" ref_strand="+" ref_description="SGN-E390101 [TUS-17-E21]">
      <seq>aacactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113349" stop="110004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113049" g_stop="112811" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="338" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="467" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="596" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110304" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="628" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E390101" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113049" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGT</genome_strand>
        <mrna_strand>AACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348447" ref_strand="+" ref_description="SGN-E348447 [cTOF-30-I7]">
      <seq>tctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113337" stop="110016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113037" g_stop="112811" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="326" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="455" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="584" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110316" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="604" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E348447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113037" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGT</genome_strand>
        <mrna_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283973" ref_strand="+" ref_description="SGN-E283973 [cLER-13-B14]">
      <seq>tggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112796" stop="110018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112497" g_stop="112397" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="230" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="359" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110335" g_stop="110318" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="377" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E283973" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112497" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTT</genome_strand>
        <mrna_strand>TGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275580" ref_strand="+" ref_description="SGN-E275580 [cLEN-10-L9]">
      <seq>aaacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113350" stop="110635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113050" g_stop="112811" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="339" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="468" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="597" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E275580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113050" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</genome_strand>
        <mrna_strand>AAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251596" ref_strand="+" ref_description="SGN-E251596 [cLEG-9-F8]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113348" stop="110635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113048" g_stop="112811" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="595" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E251596" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113048" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258585" ref_strand="+" ref_description="SGN-E258585 [cLEG-47-H2]">
      <seq>acactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113348" stop="110635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113048" g_stop="112811" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="595" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E258585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113048" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256065" ref_strand="+" ref_description="SGN-E256065 [cLEG-35-N18]">
      <seq>gtcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcataccccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113272" stop="110669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112973" g_stop="112811" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="263" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="392" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110969" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="489" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E256065" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112973" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATA-CCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAG</genome_strand>
        <mrna_strand>GTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325958" ref_strand="+" ref_description="SGN-E325958 [cTOC-12-H4]">
      <seq>ccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113313" stop="110671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113013" g_stop="112811" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="302" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="431" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110971" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="526" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E325958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113013" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAA</genome_strand>
        <mrna_strand>CCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256112" ref_strand="+" ref_description="SGN-E256112 [cLEG-37-H13]">
      <seq>caaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113271" stop="110671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112971" g_stop="112811" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="260" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="389" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110971" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="484" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E256112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112971" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAA</genome_strand>
        <mrna_strand>CAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259445" ref_strand="+" ref_description="SGN-E259445 [cLEG-42-C7]">
      <seq>aaaagaaaaacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaaccgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113357" stop="110673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113057" g_stop="112811" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="347" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="476" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110973" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="569" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E259445" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113057" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAA-CGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTC</genome_strand>
        <mrna_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACCGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359334" ref_strand="+" ref_description="SGN-E359334 [cLHT-31-L19]">
      <seq>cttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccgtactcatcaccaatttcttcttctcttgagctccccttaacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtggggtctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggtggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgcgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113307" stop="110680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113007" g_stop="112811" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="296" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="425" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110980" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="511" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E359334" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113007" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGT</genome_strand>
        <mrna_strand>CTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCGTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTAACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGGTCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGTGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGCGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301568" ref_strand="+" ref_description="SGN-E301568 [cLEW-23-J21]">
      <seq>tcttcttctcttgagctccccgggactttccagttgccattgtctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtgcgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113239" stop="110712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112939" g_stop="112811" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="228" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="357" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="111012" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="411" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E301568" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112939" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="111012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTA</genome_strand>
        <mrna_strand>TCTTCTTCTCTTGAGCTCCCCGGGACTTTCCAGTTGCCATTGTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277396" ref_strand="+" ref_description="SGN-E277396 [cLER-3-M20]">
      <seq>tagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113331" stop="110725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113031" g_stop="112811" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="320" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="449" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="111025" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="490" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E277396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113031" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="111025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAA</genome_strand>
        <mrna_strand>TAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319211" ref_strand="+" ref_description="SGN-E319211 [cTOB-16-J6]">
      <seq>acactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113348" stop="110732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113048" g_stop="112811" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="111032" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="500" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E319211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113048" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="111032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTC</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256552" ref_strand="+" ref_description="SGN-E256552 [cLEG-38-E10]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgtgcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113348" stop="110734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113048" g_stop="112811" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="111034" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="498" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E256552" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113048" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="111034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTC</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTGCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255286" ref_strand="+" ref_description="SGN-E255286 [cLEG-30-E1]">
      <seq>aaaagaaatacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113357" stop="110743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113057" g_stop="112811" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="346" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="475" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="111043" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="498" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E255286" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113057" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="111043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTG</genome_strand>
        <mrna_strand>AAAAGAAATACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260200" ref_strand="+" ref_description="SGN-E260200 [cLEG-52-P20]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113348" stop="110906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113048" g_stop="112811" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111206" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="442" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E260200" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113048" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTG</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249968" ref_strand="+" ref_description="SGN-E249968 [cLEG-4-E12]">
      <seq>cttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcnaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaagcactgaaaatgggaggagagcaaaggagtatatggataaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113274" stop="110912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112974" g_stop="112811" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="263" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111212" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="362" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E249968" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112974" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGA</genome_strand>
        <mrna_strand>CTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCNAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAAGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256949" ref_strand="+" ref_description="SGN-E256949 [cLEG-44-B19]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagattcttggttgtgggatctgcgaaaaagcaagaacctttgacggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcacgcactgaaaatgggaggagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113348" stop="110934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113048" g_stop="112811" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111234" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="414" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E256949" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113048" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGC</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGATTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGACGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCACGCACTGAAAATGGGAGGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254781" ref_strand="+" ref_description="SGN-E254781 [cLEG-33-O23]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113348" stop="110935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113048" g_stop="112811" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111235" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="413" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E254781" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113048" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAG</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254565" ref_strand="+" ref_description="SGN-E254565 [cLEG-29-L21]">
      <seq>cagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113280" stop="112527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112980" g_stop="112827" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-E254565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112980" e_stop="112827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGA</genome_strand>
        <mrna_strand>CAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372331" ref_strand="+" ref_description="SGN-E372331 [TUS-30-H15](-)">
      <seq>cacaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcatggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120728" stop="121722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121028" g_stop="121409" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="401"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E372331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121028" e_stop="121409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285646" ref_strand="+" ref_description="SGN-E285646 [cLES-5-D9]">
      <seq>acaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcattggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120729" stop="121722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121029" g_stop="121409" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="402"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E285646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121029" e_stop="121409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372332" ref_strand="+" ref_description="SGN-E372332 [TUS-30-H15]">
      <seq>acaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcattggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120729" stop="121722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121029" g_stop="121409" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="402"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-E372332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121029" e_stop="121409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>131</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10334" PGL_stop="11949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10334" e_stop="10534"/>
            <exon e_start="10766" e_stop="10895"/>
            <exon e_start="11452" e_stop="11949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10334" e_stop="10534" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10535" i_stop="10765" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10766" e_stop="10895" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10896" i_stop="11451" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11452" e_stop="11949" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10334" stop="10534"/>
              <exon start="10766" stop="10895"/>
              <exon start="11452" stop="11780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10334" stop="10534"/>
              <exon start="10766" stop="10895"/>
              <exon start="11452" stop="11780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10334" stop="10534"/>
              <exon start="10766" stop="10895"/>
              <exon start="11452" stop="11650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10534"/>
              <exon start="10766" stop="10895"/>
              <exon start="11452" stop="11695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10534"/>
              <exon start="10766" stop="10895"/>
              <exon start="11452" stop="11545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10480" stop="10534"/>
              <exon start="10766" stop="10895"/>
              <exon start="11452" stop="11949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAG : GATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAA : ATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACGTCATCGTCATATGATGAAACAAAATGCAACAGTGGTACAACTGAGGAAACAAAGCCACTAGAAATTATTATTCCAAAAATACCCTCACAAGTTATGATTAATCTTGAACTTTCAATTGGGTTGCCGTTACATACTGATCATATTTCTTCACCAGAGTCAACGGCCTCATACAACTTCTTGACCACCGTAGCACCGCCGCCAACTGCGGCGGTACCGGCGGCGGAGATGATGGCGAAGACTGTTTGTTTGTGTTG</gDNA_template>
            <first_frame> F  S  F  S  T  K  N  S  N  P  *  I  L  K  G  Q  K  *  K  K  F  K  V  W  D  V  H  L  V  V  K  K  H  I  Q  I  K  E  H  G  L  K  K  K  T  N  A  S  S  I  I  Y  V  L  M  G  K  V  A  G  V  L  F  L  K  L  Q  :  D  C  Q  D  V  E  R  V  A  D  *  D  G  *  I  I  *  G  L  I  S  K  E  G  I  L  Q  K  K  K  M  N  *  *  S  N  F  I  V  C  L  E  T   : N  G  Q  L  *  P  E  D  Y  L  E  E  R  I  T  K  S  R  T  I  G  I  H  I  L  N  E  N  S  L  V  V  A  L  I  L  K  L  T  V  H  S  T  T  T  P  L  T  P  T  P  P  P  I  S  P  P  Q  S  Q  P  K  T  S  T  W  I  S  Q  T  L  T  K  N  N  P  I  L  *  L  P  R  H  R  H  M  M  K  Q  N  A  T  V  V  Q  L  R  K  Q  S  H  *  K  L  L  F  Q  K  Y  P  H  K  L  *  L  I  L  N  F  Q  L  G  C  R  Y  I  L  I  I  F  L  H  Q  S  Q  R  P  H  T  T  S  *  P  P  *  H  R  R  Q  L  R  R  Y  R  R  R  R  *  W  R  R  L  F  V  C  V  </first_frame>
            <second_frame>  S  L  L  V  P  K  T  Q  I  L  E  Y  S  K  D  K  N  K  K  N  S  K  Y  G  T  F  T  L  L  *  K  S  T  Y  K  *  R  S  M  D  *  R  R  R  P  T  P  H  Q  L  Y  T  C  S  W  G  R  L  L  A  F  S  S  *  S  C  R :   I  V  K  M  W  K  E  L  Q  I  E  M  D  K  L  F  K  A  *  S  Q  K  R  E  F  Y  R  R  R  R  *  I  D  N  Q  T  S  *  F  A  W  K  Q  :  M  V  S  Y  S  R  K  I  T  W  K  N  G  *  R  N  Q  E  L  L  E  Y  T  Y  *  T  K  T  H  *  S  W  H  *  S  S  N  S  P  S  T  Q  Q  Q  R  H  *  L  P  H  H  H  Q  Y  H  H  R  S  H  N  Q  K  H  Q  L  G  F  H  K  R  *  P  K  T  T  Q  Y  Y  D  C  H  V  I  V  I  *  *  N  K  M  Q  Q  W  Y  N  *  G  N  K  A  T  R  N  Y  Y  S  K  N  T  L  T  S  Y  D  *  S  *  T  F  N  W  V  A  V  T  Y  *  S  Y  F  F  T  R  V  N  G  L  I  Q  L  L  D  H  R  S  T  A  A  N  C  G  G  T  G  G  G  D  D  G  E  D  C  L  F  V  L </second_frame>
            <third_frame>   L  F  *  Y  Q  K  L  K  S  L  N  T  Q  R  T  K  I  K  K  I  Q  S  M  G  R  S  P  C  C  E  K  A  H  T  N  K  G  A  W  T  K  E  E  D  Q  R  L  I  N  Y  I  R  A  H  G  E  G  C  W  R  S  L  P  K  A  A   : G  L  S  R  C  G  K  S  C  R  L  R  W  I  N  Y  L  R  P  D  L  K  R  G  N  F  T  E  E  E  D  E  L  I  I  K  L  H  S  L  L  G  N  K :   W  S  V  I  A  G  R  L  P  G  R  T  D  N  E  I  K  N  Y  W  N  T  H  I  K  R  K  L  I  S  R  G  I  D  P  Q  T  H  R  P  L  N  N  N  A  T  N  S  H  T  T  T  N  I  T  T  A  V  T  T  K  N  I  N  L  D  F  T  N  V  D  Q  K  Q  P  N  I  M  I  A  T  S  S  S  Y  D  E  T  K  C  N  S  G  T  T  E  E  T  K  P  L  E  I  I  I  P  K  I  P  S  Q  V  M  I  N  L  E  L  S  I  G  L  P  L  H  T  D  H  I  S  S  P  E  S  T  A  S  Y  N  F  L  T  T  V  A  P  P  P  T  A  A  V  P  A  A  E  M  M  A  K  T  V  C  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10345" stop="10534"/>
                    <exon start="10766" stop="10895"/>
                    <exon start="11452" stop="11947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQKLKSLNTQRTKIKKIQSMGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLSRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSVIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQTHRPLNNNATNSHTTTNITTAVTTKNINLDFTNVDQKQPNIMIATSSSYDETKCNSGTTEETKPLEIIIPKIPSQVMINLELSIGLPLHTDHISSPESTASYNFLTTVAPPPTAAVPAAEMMAKTVCLC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21324" PGL_stop="20767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21324" e_stop="20767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="21324" e_stop="20767" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21324" stop="20767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTACATATTCTCAACAACAACACTTTAACAAATTACATACCCTCAACAACAATACTTCAACAAATTACATATCCGCAATAACAAGCTCAATATTGATCTATCACAAGTTCCACAGGAGGCAATCAGAAGATCAGCAAAACACGATATCAAGTTCACTAATAATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCACGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCACGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCCCAACCAATGCCTCAGAATAATGTAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</gDNA_template>
            <first_frame> Q  I  T  Y  S  Q  Q  Q  H  F  N  K  L  H  T  L  N  N  N  T  S  T  N  Y  I  S  A  I  T  S  S  I  L  I  Y  H  K  F  H  R  R  Q  S  E  D  Q  Q  N  T  I  S  S  S  L  I  I  S  M  C  N  A  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  H  G  A  R  H  D  P  R  *  *  *  P  S  R  H  A  I  R  P  S  K  Y  S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  Q  N  N  V  D  D  K  F  T  H  I  M  R  R  *  P  F  P  *  H  H  T  V  H  N  H  T  N  M  K  L  H  Q  Q  * </first_frame>
            <second_frame>  K  L  H  I  L  N  N  N  T  L  T  N  Y  I  P  S  T  T  I  L  Q  Q  I  T  Y  P  Q  *  Q  A  Q  Y  *  S  I  T  S  S  T  G  G  N  Q  K  I  S  K  T  R  Y  Q  V  H  *  *  *  V  C  A  M  Q  W  N  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  S  V  T  A  H  D  T  T  L  D  N  S  N  H  R  G  T  R  Y  V  P  R  N  I  V  S  I  A  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  F  F  L  N  A  H  N  T  C  P  N  Q  C  L  R  I  M  *  M  T  S  S  H  I  *  *  G  D  D  H  F  H  N  I  T  Q  F  T  T  T  Q  T  *  S  Y  I  N  N   </second_frame>
            <third_frame>   N  Y  I  F  S  T  T  T  L  *  Q  I  T  Y  P  Q  Q  Q  Y  F  N  K  L  H  I  R  N  N  K  L  N  I  D  L  S  Q  V  P  Q  E  A  I  R  R  S  A  K  H  D  I  K  F  T  N  N  K  Y  V  Q  C  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  R  P  S  I  I  V  T  I  A  A  R  D  T  S  L  E  I  *  Y  P  S  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  P  T  N  A  S  E  *  C  R  *  Q  V  H  T  Y  N  E  E  M  T  I  S  I  T  S  H  S  S  Q  P  H  K  H  E  V  T  S  T  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21104" stop="20859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDTHPLSLSPGPMGDISVHASVTAHDTTLDNSNHRGTRYVPRNIVSIAARDTSLEMVHPLKYPFFLNAHNTCPNQCLRIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21324" stop="21100"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITYSQQQHFNKLHTLNNNTSTNYISAITSSILIYHKFHRRQSEDQQNTISSSLIISMCNAMECNVKYNDACLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="38935" PGL_stop="39447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38935" e_stop="39447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38935" e_stop="39447" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38935" stop="39447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38935" stop="39359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38935" stop="39290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</gDNA_template>
            <first_frame> N  D  L  A  H  K  S  S  K  S  V  S  N  G  R  A  I  S  N  K  K  D  V  N  D  E  K  G  R  Q  E  R  R  R  K  G  L  T  L  L  K  S  A  W  P  S  E  L  E  Q  P  L  Y  D  V  D  L  V  I  I  L  C  E  M  N  D  F  K  E  G  L  L  F  L  Y  E  K  M  K  L  F  K  E  V  I  A  C  Y  M  Q  V  H  D  H  E  G  L  I  S  C  C  K  R  L  G  D  L  G  K  G  G  D  P  S  L  W  A  D  L  L  K  Y  F  G  E  L  G  E  D  C  S  K  E  V  K  E  I  L  T  Y  I  E  R  G  D  I  L  P  P  I  V  V  L  Q  T  L  A  K  N  P  C  L  S  L  S  V  I  K  D  Y  I </first_frame>
            <second_frame>  M  I  *  H  I  N  L  Q  N  Q  Y  L  M  G  G  L  Y  R  T  R  K  T  *  M  M  R  K  V  V  K  S  D  V  G  R  G  *  P  C  L  R  V  H  G  L  L  N  *  N  N  H  Y  M  T  L  I  L  S  *  F  Y  A  R  *  M  T  L  K  K  D  C  C  F  C  M  R  R  *  N  F  S  K  K  L  L  H  A  T  C  R  Y  M  I  M  K  V  *  F  H  A  A  R  D  W  V  I  W  V  R  G  V  T  L  L  F  G  Q  I  C  *  S  I  L  V  N  L  E  K  T  A  Q  K  K  S  K  K  S  *  H  T  L  R  G  V  I  S  C  L  P  L  W  F  F  R  H  L  L  K  T  R  A  S  L  S  Q  L  S  K  I  T   </second_frame>
            <third_frame>   *  S  S  T  *  I  F  K  I  S  I  *  W  E  G  Y  I  E  Q  E  R  R  K  *  *  E  R  S  S  R  A  T  S  E  G  A  D  L  A  *  E  C  M  A  F  *  T  R  T  T  T  I  *  R  *  S  C  H  N  F  M  R  D  E  *  L  *  R  R  I  V  V  S  V  *  E  D  E  T  F  Q  R  S  Y  C  M  L  H  A  G  T  *  S  *  R  F  D  F  M  L  Q  E  I  G  *  F  G  *  G  G  *  P  F  S  L  G  R  F  V  E  V  F  W  *  T  W  R  R  L  L  K  R  S  Q  R  N  P  D  I  H  *  E  G  *  Y  L  A  S  H  C  G  S  S  D  T  C  *  K  P  V  P  L  S  L  S  Y  Q  R  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38935" stop="39447"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDLAHKSSKSVSNGRAISNKKDVNDEKGRQERRRKGLTLLKSAWPSELEQPLYDVDLVIILCEMNDFKEGLLFLYEKMKLFKEVIACYMQVHDHEGLISCCKRLGDLGKGGDPSLWADLLKYFGELGEDCSKEVKEILTYIERGDILPPIVVLQTLAKNPCLSLSVIKDYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41487" PGL_stop="42222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41487" e_stop="42222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="41487" e_stop="42222" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41487" stop="42192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41488" stop="41981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41559" stop="42168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41586" stop="42222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41586" stop="42212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41586" stop="42207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTATAGGGAAATT</gDNA_template>
            <first_frame> K  N  H  Q  *  *  E  K  R  S  R  I  *  E  Q  M  L  E  Y  F  S  L  A  S  V  L  L  A  H  S  P  *  T  F  L  L  S  T  S  C  V  C  T  H  F  I  S  D  V  L  A  T  M  R  K  S  A  P  S  V  L  P  S  T  E  P  F  W  K  Q  R  E  A  W  N  K  V  P  K  T  Q  T  S  S  S  N  K  S  R  A  Q  R  M  D  F  P  *  L  L  I  I  L  A  R  G  L  S  A  K  P  A  T  G  L  L  K  L  M  D  Q  T  V  L  L  P  A  T  I  S  S  V  L  S  S  Q  F  L  S  T  K  V  V  E  I  S  P  A  I  N  K  V  H  *  A  T  C  S  E  E  C  H  P  S  C  L  V  F  I  R  P  L  V  S  F  K  V  I  V  E  L  Q  F  Y  N  S  L  *  T  K  *  N  Y  V  Q  K  N  N  L  I  D  L  D  K  I  C  T  T  K  C  I  L  L  T  L  I  T  S  G  I  S  W  Y  F  N  N  I  L  L  V  Y  L  I  I  N  N  A  S  A  A  N  Y  L  *  G  N  </first_frame>
            <second_frame>  R  I  I  N  N  E  K  R  D  P  G  S  K  N  K  C  *  N  I  S  A  *  Q  V  Y  Y  L  H  I  H  P  R  P  S  C  C  P  L  H  V  Y  A  L  I  S  S  A  M  S  W  R  Q  *  E  R  V  P  R  V  C  S  R  V  Q  S  R  S  G  N  K  E  K  L  G  T  K  F  Q  K  P  R  P  V  L  P  T  S  Q  E  L  K  G  W  I  F  R  N  C  *  L  F  W  Q  G  D  Y  Q  Q  N  Q  Q  R  A  F  *  S  *  W  I  K  Q  C  F  F  R  Q  R  F  L  A  F  C  H  H  S  F  *  V  L  K  L  L  R  S  L  R  L  *  T  K  F  I  E  L  H  V  Q  K  N  V  I  H  P  V  W  C  L  L  G  H  L  F  L  L  R  L  L  L  S  C  S  S  T  T  L  C  E  Q  N  K  I  M  C  R  R  T  I  *  L  I  W  I  K  S  A  Q  Q  N  V  F  C  *  H  *  L  Q  V  G  L  V  G  I  L  T  T  Y  Y  *  C  T  *  *  L  I  M  H  Q  Q  L  I  I  Y  R  E  I </second_frame>
            <third_frame>   E  S  S  I  M  R  K  E  I  Q  D  L  R  T  N  A  R  I  F  Q  L  S  K  C  T  T  C  T  F  T  L  D  L  P  A  V  H  F  M  C  M  H  S  F  H  Q  R  C  L  G  D  N  E  K  E  C  P  E  C  A  P  E  Y  R  A  V  L  E  T  K  R  S  L  E  Q  S  S  K  N  P  D  Q  F  F  Q  Q  V  K  S  S  K  D  G  F  S  V  I  A  D  Y  F  G  K  G  I  I  S  K  T  S  N  G  P  S  E  A  N  G  S  N  S  A  S  S  G  N  D  F  *  R  F  V  I  T  V  F  E  Y  *  S  C  *  D  L  S  G  Y  K  Q  S  S  L  S  Y  M  F  R  R  M  S  S  I  L  F  G  V  Y  *  A  T  C  F  F  *  G  Y  C  *  A  A  V  L  Q  L  S  V  N  K  I  K  L  C  A  E  E  Q  S  D  *  F  G  *  N  L  H  N  K  M  Y  F  A  D  I  D  Y  K  W  D  *  L  V  F  *  Q  H  I  I  S  V  L  N  N  *  *  C  I  S  S  *  L  F  I  G  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41489" stop="41875"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESSIMRKEIQDLRTNARIFQLSKCTTCTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRAVLETKRSLEQSSKNPDQFFQQVKSSKDGFSVIADYFGKGIISKTSNGPSEANGSNSASSGNDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="42512" PGL_stop="47846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42512" e_stop="42635"/>
            <exon e_start="45424" e_stop="45927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42512" e_stop="42635" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="45424" e_stop="45927" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42512" stop="42635"/>
              <exon start="45424" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42529" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42532" stop="42635"/>
              <exon start="45424" stop="45857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42538" stop="42635"/>
              <exon start="45424" stop="45845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42540" stop="42635"/>
              <exon start="45424" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42545" stop="42635"/>
              <exon start="45424" stop="45927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42554" stop="42635"/>
              <exon start="45424" stop="45834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42580" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42587" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45484" stop="45886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45488" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGG</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  M  C  L  I  *  Y  P  F  S  D  W  Q  L  L  L  S  I  Q  R  E  C  S  S  F  W  </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T  C  V  *  F  N  I  H  F  L  T  G  N  Y  S  Y  Q  F  K  E  N  V  L  P  F  G </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  V  S  D  L  I  S  I  F  *  L  A  I  T  P  I  N  S  K  R  M  F  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42512" stop="42635"/>
                    <exon start="45424" stop="45638"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42512" e_stop="42635"/>
            <exon e_start="45424" e_stop="45886"/>
            <exon e_start="46702" e_stop="46708"/>
            <exon e_start="46839" e_stop="46880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.857"/>
          <exon-only e_score="0.619"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42512" e_stop="42635" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45424" e_stop="45886" e_length="463"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45887" i_stop="46701" i_length="815"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="46702" e_stop="46708" e_length="7"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46709" i_stop="46838" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="0.619">
            <gDNA_exon_boundary e_start="46839" e_stop="46880" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42512" stop="42635"/>
              <exon start="45424" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42529" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42532" stop="42635"/>
              <exon start="45424" stop="45857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42538" stop="42635"/>
              <exon start="45424" stop="45845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42540" stop="42635"/>
              <exon start="45424" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42551" stop="42635"/>
              <exon start="45424" stop="45886"/>
              <exon start="46702" stop="46708"/>
              <exon start="46839" stop="46880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42554" stop="42635"/>
              <exon start="45424" stop="45834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42580" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42587" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45484" stop="45886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45488" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA : AAAAGAA : CTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAA</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  M  C  L  I  *  Y  P  F  S  D  W  Q :   K  E  :  L  N  *  N  T  I  S  *  K  N  I  K  Q  K </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T  C  V  *  F  N  I  H  F  L  T  G   : K  K  N :   *  I  K  I  L  S  L  K  K  I  *  N  K   </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  V  S  D  L  I  S  I  F  *  L  A  :  K  R   : T  K  L  K  Y  Y  L  L  K  K  Y  K  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42512" stop="42635"/>
                    <exon start="45424" stop="45638"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42512" e_stop="42635"/>
            <exon e_start="45424" e_stop="45855"/>
            <exon e_start="46144" e_stop="46186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.335" e_score="0.998"/>
          <exon-only e_score="0.442"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42512" e_stop="42635" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45424" e_stop="45855" e_length="432"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.335">
            <gDNA_intron_boundary i_start="45856" i_stop="46143" i_length="288"/>
          </intron>
          <exon e_serial="3" e_score="0.442">
            <gDNA_exon_boundary e_start="46144" e_stop="46186" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42512" stop="42635"/>
              <exon start="45424" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42529" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42538" stop="42635"/>
              <exon start="45424" stop="45845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42540" stop="42635"/>
              <exon start="45424" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42554" stop="42635"/>
              <exon start="45424" stop="45834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42580" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42587" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45488" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45513" stop="45855"/>
              <exon start="46144" stop="46186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736384" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGT : AATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATG</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  M   : *  L  H  K  F  M  *  E  N  P  R  P  V  L   </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T  C  :  N  C  I  S  S  C  K  R  I  L  G  Q  F  Y  </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  V :   I  A  *  V  H  V  R  E  S  *  A  S  F  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42512" stop="42635"/>
                    <exon start="45424" stop="45638"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="42512" e_stop="42635"/>
            <exon e_start="45424" e_stop="45853"/>
            <exon e_start="46861" e_stop="46926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.576"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42512" e_stop="42635" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45424" e_stop="45853" e_length="430"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45854" i_stop="46860" i_length="1007"/>
          </intron>
          <exon e_serial="3" e_score="0.576">
            <gDNA_exon_boundary e_start="46861" e_stop="46926" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42512" stop="42635"/>
              <exon start="45424" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42529" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42538" stop="42635"/>
              <exon start="45424" stop="45845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42540" stop="42635"/>
              <exon start="45424" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42554" stop="42635"/>
              <exon start="45424" stop="45834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42580" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42587" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42596" stop="42635"/>
              <exon start="45424" stop="45853"/>
              <exon start="46861" stop="46926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45488" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACAT : AAAAAAATATAAAACAAAAATTTATCACCTCAAACCCAATTAAATATGAATACGATAAACATTTCC</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  I :   K  K  Y  K  T  K  I  Y  H  L  K  P  N  *  I  *  I  R  *  T  F   </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T   : *  K  N  I  K  Q  K  F  I  T  S  N  P  I  K  Y  E  Y  D  K  H  F  </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  :  K  K  I  *  N  K  N  L  S  P  Q  T  Q  L  N  M  N  T  I  N  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42512" stop="42635"/>
                    <exon start="45424" stop="45638"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="42512" e_stop="42635"/>
            <exon e_start="45424" e_stop="45853"/>
            <exon e_start="46144" e_stop="46154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.335" e_score="0.998"/>
          <exon-only e_score="0.455"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42512" e_stop="42635" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45424" e_stop="45853" e_length="430"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.335">
            <gDNA_intron_boundary i_start="45854" i_stop="46143" i_length="290"/>
          </intron>
          <exon e_serial="3" e_score="0.455">
            <gDNA_exon_boundary e_start="46144" e_stop="46154" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42512" stop="42635"/>
              <exon start="45424" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42529" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45853"/>
              <exon start="46144" stop="46154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42538" stop="42635"/>
              <exon start="45424" stop="45845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42540" stop="42635"/>
              <exon start="45424" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42554" stop="42635"/>
              <exon start="45424" stop="45834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42580" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42587" stop="42635"/>
              <exon start="45424" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45488" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACAT : AATTGCATAAG</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  I :   I  A  *  </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T   : *  L  H  K </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  :  N  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42512" stop="42635"/>
                    <exon start="45424" stop="45638"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="42534" e_stop="42635"/>
            <exon e_start="45424" e_stop="45850"/>
            <exon e_start="46012" e_stop="46027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42534" e_stop="42635" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45424" e_stop="45850" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45851" i_stop="46011" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="46012" e_stop="46027" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42538" stop="42635"/>
              <exon start="45424" stop="45845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42540" stop="42635"/>
              <exon start="45424" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42554" stop="42635"/>
              <exon start="45424" stop="45834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45485" stop="45850"/>
              <exon start="46012" stop="46027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA : TAAAATAAAAGGAAAA</gDNA_template>
            <first_frame> L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *   : I  K  *  K  E   </first_frame>
            <second_frame>  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  :  *  N  K  R  K  </second_frame>
            <third_frame>   T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N :   K  I  K  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42536" stop="42635"/>
                    <exon start="45424" stop="45638"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="42534" e_stop="42635"/>
            <exon e_start="45424" e_stop="45850"/>
            <exon e_start="46702" e_stop="46708"/>
            <exon e_start="46861" e_stop="46928"/>
            <exon e_start="47827" e_stop="47846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.857"/>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="0.515"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42534" e_stop="42635" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45424" e_stop="45850" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45851" i_stop="46701" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="46702" e_stop="46708" e_length="7"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46709" i_stop="46860" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="0.515">
            <gDNA_exon_boundary e_start="46861" e_stop="46928" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="46929" i_stop="47826" i_length="898"/>
          </intron>
          <exon e_serial="5" e_score="0.650">
            <gDNA_exon_boundary e_start="47827" e_stop="47846" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42538" stop="42635"/>
              <exon start="45424" stop="45845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42540" stop="42635"/>
              <exon start="45424" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42550" stop="42635"/>
              <exon start="45424" stop="45850"/>
              <exon start="46702" stop="46708"/>
              <exon start="46861" stop="46928"/>
              <exon start="47827" stop="47846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42554" stop="42635"/>
              <exon start="45424" stop="45834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA : AAAAGAA : AAAAAAATATAAAACAAAAATTTATCACCTCAAACCCAATTAAATATGAATACGATAAACATTTCCAA : GATAAGGCAGACAACAAAAA</gDNA_template>
            <first_frame> L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *   : K  K  K :   K  K  Y  K  T  K  I  Y  H  L  K  P  N  *  I  *  I  R  *  T  F  P   : R  *  G  R  Q  Q  K </first_frame>
            <second_frame>  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  :  K  R   : K  K  N  I  K  Q  K  F  I  T  S  N  P  I  K  Y  E  Y  D  K  H  F  Q  :  D  K  A  D  N  K   </second_frame>
            <third_frame>   T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  K :   K  E  :  K  K  I  *  N  K  N  L  S  P  Q  T  Q  L  N  M  N  T  I  N  I  S  K :   I  R  Q  T  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42536" stop="42635"/>
                    <exon start="45424" stop="45638"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="42534" e_stop="42635"/>
            <exon e_start="45424" e_stop="45850"/>
            <exon e_start="46861" e_stop="46880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.850"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42534" e_stop="42635" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45424" e_stop="45850" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45851" i_stop="46860" i_length="1010"/>
          </intron>
          <exon e_serial="3" e_score="0.850">
            <gDNA_exon_boundary e_start="46861" e_stop="46880" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45850"/>
              <exon start="46861" stop="46880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42534" stop="42635"/>
              <exon start="45424" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42538" stop="42635"/>
              <exon start="45424" stop="45845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42540" stop="42635"/>
              <exon start="45424" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42554" stop="42635"/>
              <exon start="45424" stop="45834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA : AAAAAAATATAAAACAAAAA</gDNA_template>
            <first_frame> L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *   : K  K  N  I  K  Q  K </first_frame>
            <second_frame>  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  :  K  K  I  *  N  K   </second_frame>
            <third_frame>   T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  K :   K  K  Y  K  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42536" stop="42635"/>
                    <exon start="45424" stop="45638"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="45074" e_stop="45886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45074" e_stop="45886" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45074" stop="45602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45484" stop="45886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45488" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA</gDNA_template>
            <first_frame> Q  A  Y  F  H  Q  F  D  N  L  F  I  G  T  V  W  Q  L  K  R  V  F  L  R  P  A  *  M  T  S  N  Y  L  L  C  Q  L  L  S  L  C  T  S  S  N  V  C  L  N  R  Y  I  S  N  I  L  *  Y  L  F  S  *  L  Y  M  F  *  N  F  H  F  S  H  I  S  F  L  I  V  F  H  L  T  V  S  L  *  K  V  Y  F  N  Q  I  W  M  L  L  F  M  L  F  I  S  L  T  L  L  I  I  D  I  Y  C  L  V  S  E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  V  S  D  L  I  S  I  F  *  L  A </first_frame>
            <second_frame>  K  H  T  S  I  S  L  T  I  F  S  L  E  Q  C  G  N  *  N  V  F  F  Y  G  L  L  E  *  L  R  I  I  Y  Y  A  N  F  F  L  Y  A  Q  V  Q  T  S  V  L  T  V  T  F  Q  T  F  F  D  T  C  L  V  N  Y  T  C  F  E  T  S  I  S  L  I  F  H  F  *  L  S  F  I  L  P  F  L  Y  E  K  F  I  S  I  K  F  G  C  C  C  S  C  F  L  *  V  *  P  Y  *  *  L  I  F  I  V  W  S  V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  M  C  L  I  *  Y  P  F  S  D  W   </second_frame>
            <third_frame>   S  I  L  P  S  V  *  Q  S  F  H  W  N  S  V  A  I  E  T  C  F  S  T  A  C  L  N  D  F  E  L  F  I  M  P  T  S  F  F  M  H  K  F  K  R  L  S  *  P  L  H  F  K  H  S  L  I  L  V  *  L  I  I  H  V  L  K  L  P  F  L  S  Y  F  I  S  N  C  L  S  S  Y  R  F  F  M  K  S  L  F  Q  S  N  L  D  A  V  V  H  A  F  Y  K  S  D  L  T  D  N  *  Y  L  L  F  G  Q  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T  C  V  *  F  N  I  H  F  L  T  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45402" stop="45638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFIVWSVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="46893" PGL_stop="45468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46877" e_stop="46861"/>
            <exon e_start="45919" e_stop="45541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.824"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.824">
            <gDNA_exon_boundary e_start="46877" e_stop="46861" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46860" i_stop="45920" i_length="941"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="45919" e_stop="45541" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46877" stop="46861"/>
              <exon start="45919" stop="45541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229169" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46877" stop="46861"/>
              <exon start="45919" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTTATATTTTTTT : GAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCA</gDNA_template>
            <first_frame> L  F  Y  I  F  L :   K  N  I  L  F  E  L  I  G  V  I  A  S  Q  K  M  D  I  K  S  D  T  C  S  T  N  M  V  F  S  *  E  N  I  I  N  E  P  G  I  P  M  L  C  Q  N  R  N  K  K  S  N  H  Q  G  K  A  K  S  K  L  K  A  I  *  C  S  L  I  Q  *  V  H  L  H  T  W  K  L  Q  G  Q  H  Y  C  G  G  D  V  I  A  *  *  S  S  Q  K  Q  F  S  F  A  G  R  R  Q  H  K  L  G  L  *  H  Q  W  R  L  Q  T  R  H  Q  E  S  S  S </first_frame>
            <second_frame>  C  F  I  F  F   : *  R  T  F  S  L  N  *  *  E  *  L  P  V  R  K  W  I  L  N  Q  T  H  V  Q  P  I  W  F  S  V  K  K  I  L  L  M  N  Q  A  Y  Q  C  C  A  K  T  E  T  R  K  A  T  T  R  V  K  L  S  Q  N  *  K  L  F  N  A  L  *  F  N  R  F  I  F  I  H  G  S  S  K  G  S  I  I  V  V  E  T  *  *  H  D  D  L  A  R  S  S  F  L  L  L  E  D  D  S  I  N  W  D  Y  N  T  N  G  D  C  R  P  D  T  K  S  H  L   </second_frame>
            <third_frame>   V  L  Y  F  F  :  E  E  H  S  L  *  I  D  R  S  N  C  Q  S  E  N  G  Y  *  I  R  H  M  F  N  Q  Y  G  F  Q  L  R  K  Y  Y  *  *  T  R  H  T  N  V  V  P  K  Q  K  Q  E  K  Q  P  P  G  *  S  *  V  K  T  E  S  Y  L  M  L  S  N  S  I  G  S  S  S  Y  M  E  A  P  R  A  A  L  L  W  W  R  R  N  S  M  M  I  *  P  E  A  V  F  F  C  W  K  T  T  A  *  T  G  T  I  T  P  M  A  T  A  D  Q  T  P  R  V  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0286N17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46893" e_stop="46861"/>
            <exon e_start="45908" e_stop="45468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.697"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.697">
            <gDNA_exon_boundary e_start="46893" e_stop="46861" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46860" i_stop="45909" i_length="952"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="45908" e_stop="45468" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46893" stop="46861"/>
              <exon start="45908" stop="45468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGGTGATAAATTTTTGTTTTATATTTTTTT : TCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCAGCTTCTGGTTTGACATCCTGTCCAAGTTGTACATGTGTTTTGCGTGAATGTAAAAAGGTTCGTCATGTCCATG</gDNA_template>
            <first_frame> L  R  *  *  I  F  V  L  Y  F  F  :  S  L  N  *  *  E  *  L  P  V  R  K  W  I  L  N  Q  T  H  V  Q  P  I  W  F  S  V  K  K  I  L  L  M  N  Q  A  Y  Q  C  C  A  K  T  E  T  R  K  A  T  T  R  V  K  L  S  Q  N  *  K  L  F  N  A  L  *  F  N  R  F  I  F  I  H  G  S  S  K  G  S  I  I  V  V  E  T  *  *  H  D  D  L  A  R  S  S  F  L  L  L  E  D  D  S  I  N  W  D  Y  N  T  N  G  D  C  R  P  D  T  K  S  H  L  Q  L  L  V  *  H  P  V  Q  V  V  H  V  F  C  V  N  V  K  R  F  V  M  S  M </first_frame>
            <second_frame>  *  G  D  K  F  L  F  Y  I  F  F :   L  *  I  D  R  S  N  C  Q  S  E  N  G  Y  *  I  R  H  M  F  N  Q  Y  G  F  Q  L  R  K  Y  Y  *  *  T  R  H  T  N  V  V  P  K  Q  K  Q  E  K  Q  P  P  G  *  S  *  V  K  T  E  S  Y  L  M  L  S  N  S  I  G  S  S  S  Y  M  E  A  P  R  A  A  L  L  W  W  R  R  N  S  M  M  I  *  P  E  A  V  F  F  C  W  K  T  T  A  *  T  G  T  I  T  P  M  A  T  A  D  Q  T  P  R  V  I  F  S  F  W  F  D  I  L  S  K  L  Y  M  C  F  A  *  M  *  K  G  S  S  C  P   </second_frame>
            <third_frame>   E  V  I  N  F  C  F  I  F  F   : F  F  E  L  I  G  V  I  A  S  Q  K  M  D  I  K  S  D  T  C  S  T  N  M  V  F  S  *  E  N  I  I  N  E  P  G  I  P  M  L  C  Q  N  R  N  K  K  S  N  H  Q  G  K  A  K  S  K  L  K  A  I  *  C  S  L  I  Q  *  V  H  L  H  T  W  K  L  Q  G  Q  H  Y  C  G  G  D  V  I  A  *  *  S  S  Q  K  Q  F  S  F  A  G  R  R  Q  H  K  L  G  L  *  H  Q  W  R  L  Q  T  R  H  Q  E  S  S  S  A  S  G  L  T  S  C  P  S  C  T  C  V  L  R  E  C  K  K  V  R  H  V  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0286N17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="51867" PGL_stop="50703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51867" e_stop="50703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51867" e_stop="50703" e_length="1165"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51867" stop="51300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51828" stop="51185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51345" stop="50703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51345" stop="50729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTTTTGGCTCATTTTGCACTACTACTTGCTTTCATTTGAGCCTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTTTTGTCAAATCTCGAGTTTGAGTCATG</gDNA_template>
            <first_frame> F  C  F  G  S  F  C  T  T  T  C  F  H  L  S  L  F  S  F  P  K  N  F  Q  L  V  K  V  F  K  Y  Q  T  N  L  C  L  L  L  R  H  G  I  *  R  V  K  *  Q  K  Q  P  R  W  W  E  *  *  Q  *  *  *  *  *  K  *  *  Q  C  D  F  Y  *  N  C  *  E  A  I  E  R  P  S  H  Q  G  G  W  S  R  A  A  H  S  N  A  G  F  M  R  R  Q  G  F  S  A  N  Q  R  I  G  S  *  V  G  W  R  N  H  R  V  A  I  A  T  S  *  T  V  D  Y  S  C  D  G  N  R  Y  N  S  G  *  F  L  N  S  *  C  L  F  T  Q  Q  R  D  Y  N  F  S  S  A  V  E  I  C  A  A  F  H  S  R  R  C  C  H  Y  A  G  F  P  P  P  D  S  G  Q  Q  F  W  A  R  P  R  *  E  F  H  E  E  E  V  *  R  R  Y  N  C  S  I  N  F  T  I  V  I  I  S  *  T  G  K  N  R  S  S  R  S  R  T  G  S  R  I  E  T  R  F  I  E  S  L  *  L  H  T  D  S  R  H  V  G  C  W  S  G  G  R  *  R  R  K  H  V  L  D  A  T  R  Y  L  I  N  H  A  E  N  W  W  F  R  V  T  G  R  W  P  V  Q  S  G  S  T  R  I  N  V  F  A  A  A  T  A  G  S  A  A  G  V  G  C  D  R  D  K  Y  G  N  V  G  I  D  E  C  I  *  Q  *  *  *  *  G  *  W  D  *  F  G  D  E  F  G  T  T  S  S  S  S  K  S  A  S  R  *  *  Q  W  *  *  K  S  Q  R  F  P  I  I  T  P  T  L  I  P  Q  K  D  V  W  D  C  F  C  Q  I  S  S  L  S  H  </first_frame>
            <second_frame>  S  V  L  A  H  F  A  L  L  L  A  F  I  *  A  F  F  L  F  L  K  T  S  N  W  L  K  F  S  N  I  K  Q  I  F  V  C  C  Y  A  M  E  F  R  E  S  N  S  K  N  N  Q  D  G  G  S  N  S  N  N  N  S  N  E  N  N  S  N  V  I  S  T  K  I  V  K  K  P  S  K  D  R  H  T  K  V  D  G  R  G  R  R  I  R  M  P  A  L  C  A  A  R  V  F  Q  L  T  K  E  L  G  H  K  S  D  G  E  T  I  E  W  L  L  Q  Q  A  E  P  S  I  I  A  A  T  G  T  G  T  I  P  A  N  F  S  T  L  N  V  S  L  R  S  S  G  T  T  I  S  A  P  P  S  K  S  A  P  L  F  I  H  G  G  A  A  T  M  L  G  F  H  H  Q  I  P  G  N  S  F  G  Q  D  P  D  E  N  F  M  K  K  R  Y  R  E  D  T  T  A  A  S  T  S  P  S  S  S  S  A  K  P  E  R  T  G  V  Q  G  H  E  P  D  Q  E  S  K  P  G  S  S  N  P  S  S  Y  I  P  T  P  A  M  W  A  V  G  P  A  A  G  N  V  G  N  T  F  W  M  L  P  G  T  S  S  T  M  Q  R  I  G  G  F  E  L  P  G  G  G  R  F  S  P  V  Q  L  G  S  M  F  L  Q  Q  P  Q  P  V  Q  Q  L  G  L  G  V  T  E  T  N  M  G  M  L  A  S  M  N  A  Y  N  S  S  S  S  R  G  S  G  I  D  L  G  M  N  L  E  Q  H  H  H  H  Q  N  Q  P  Q  G  S  D  S  G  D  E  N  H  K  D  S  Q  S  *  L  Q  H  *  Y  H  K  R  M  C  G  T  V  F  V  K  S  R  V  *  V  M </second_frame>
            <third_frame>   L  F  W  L  I  L  H  Y  Y  L  L  S  F  E  P  F  F  F  S  *  K  L  P  I  G  *  S  F  Q  I  S  N  K  S  L  F  V  V  T  P  W  N  L  E  S  Q  I  A  K  T  T  K  M  V  G  V  I  A  I  I  I  V  M  K  I  I  A  M  *  F  L  L  K  L  L  R  S  H  R  K  T  V  T  P  R  W  M  V  E  G  G  A  F  E  C  R  L  Y  A  P  P  G  F  F  S  *  P  K  N  W  V  I  S  R  M  A  K  P  *  S  G  Y  C  N  K  L  N  R  R  L  *  L  R  R  E  Q  V  Q  F  R  L  I  S  Q  L  L  M  S  L  Y  A  A  A  G  L  Q  F  Q  L  R  R  R  N  L  R  R  F  S  F  T  A  V  L  P  L  C  W  V  S  T  T  R  F  R  A  T  V  L  G  K  T  Q  M  R  I  S  *  R  R  G  I  E  K  I  Q  L  Q  H  Q  L  H  H  R  H  H  Q  L  N  R  K  E  P  E  F  K  V  T  N  R  I  K  N  R  N  P  V  H  R  I  P  L  A  T  Y  R  L  P  P  C  G  L  L  V  R  R  P  V  T  S  E  T  R  S  G  C  Y  Q  V  P  H  Q  P  C  R  E  L  V  V  S  S  Y  R  E  V  A  G  S  V  R  F  N  *  D  Q  C  F  C  S  S  H  S  R  F  S  S  W  G  W  V  *  Q  R  Q  I  W  E  C  W  H  R  *  M  H  I  T  V  V  V  V  G  V  V  G  L  I  W  G  *  I  W  N  N  I  I  I  I  K  I  S  L  K  V  V  T  V  V  M  K  I  T  K  I  P  N  H  N  S  N  I  D  T  T  K  G  C  V  G  L  F  L  S  N  L  E  F  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51824" stop="50769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFFLFLKTSNWLKFSNIKQIFVCCYAMEFRESNSKNNQDGGSNSNNNSNENNSNVISTKIVKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFSTLNVSLRSSGTTISAPPSKSAPLFIHGGAATMLGFHHQIPGNSFGQDPDENFMKKRYREDTTAASTSPSSSSAKPERTGVQGHEPDQESKPGSSNPSSYIPTPAMWAVGPAAGNVGNTFWMLPGTSSTMQRIGGFELPGGGRFSPVQLGSMFLQQPQPVQQLGLGVTETNMGMLASMNAYNSSSSRGSGIDLGMNLEQHHHHQNQPQGSDSGDENHKDSQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="66174" PGL_stop="63431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66174" e_stop="66121"/>
            <exon e_start="64496" e_stop="63938"/>
            <exon e_start="63714" e_stop="63431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66174" e_stop="66121" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66120" i_stop="64497" i_length="1624"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64496" e_stop="63938" e_length="559"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.843">
            <gDNA_intron_boundary i_start="63937" i_stop="63715" i_length="223"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63714" e_stop="63431" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66174" stop="66121"/>
              <exon start="64496" stop="63938"/>
              <exon start="63714" stop="63571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66174" stop="66121"/>
              <exon start="64496" stop="63982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64337" stop="63938"/>
              <exon start="63714" stop="63600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64265" stop="63938"/>
              <exon start="63714" stop="63431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATG : GGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG : TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTAAACAAGCAAGGAAGCACCAGACATGGTCAATTGCTGGATATCTTGTAGCAAAGATGTTGCTGGAGGATCCTTCACACTTGGGAATGATCTCTTTGGAGGAGGACAAGCAAATGAAGCCTGTAATCAAGCGATCATCTTCA</gDNA_template>
            <first_frame> T  F  P  T  L  L  C  A  D  G  C  S  M  I  D  R  R  M  :  G  V  Y  G  Y  P  I  E  I  Q  A  L  F  F  M  A  L  R  S  A  L  A  M  L  K  H  D  T  E  G  K  E  F  I  E  R  I  V  K  R  L  H  A  L  S  Y  H  M  R  S  Y  F  W  L  D  F  Q  Q  L  N  D  I  Y  R  Y  K  T  E  E  Y  S  H  T  A  V  N  K  F  N  V  I  P  D  S  I  P  E  W  V  F  D  F  V  P  T  R  G  G  Y  F  I  G  N  V  S  P  A  R  M  D  F  R  W  F  A  L  G  N  C  I  A  I  L  S  S  L  A  T  P  E  Q  A  S  A  I  M  D  L  I  E  S  R  W  E  E  L  V  A  D  M  P  L  K  I  C  Y  P  A  I  E  N  H  E  W  R  I  V  T  G  C  D  P  K  N  I  R  W  S  Y  H  N  G  G  S  W  P   : V  L  L  W  L  L  T  A  A  C  I  K  T  G  R  P  Q  I  A  R  R  A  I  D  L  A  E  S  R  L  L  K  D  S  W  P  E  Y  Y  D  G  K  L  G  R  Y  I  G  K  Q  A  R  K  H  Q  T  W  S  I  A  G  Y  L  V  A  K  M  L  L  E  D  P  S  H  L  G  M  I  S  L  E  E  D  K  Q  M  K  P  V  I  K  R  S  S  S </first_frame>
            <second_frame>  H  F  Q  L  C  Y  V  L  M  D  A  Q  *  L  I  G  G  W :   V  F  M  D  I  L  L  R  S  K  L  S  S  S  W  H  *  D  L  H  W  P  C  *  S  T  I  Q  K  G  K  N  S  L  R  E  *  *  S  A  C  M  P  *  V  I  I  C  E  V  I  F  G  S  T  F  N  S  *  M  T  Y  I  A  I  K  L  K  S  I  L  T  Q  Q  *  I  S  L  M  L  F  L  I  Q  S  Q  S  G  Y  L  I  L  C  L  H  V  E  V  T  L  L  E  T  L  V  L  Q  G  W  T  S  G  G  L  L  W  V  T  V  L  Q  S  C  L  P  L  P  L  Q  N  K  L  L  L  L  W  I  S  *  N  P  A  G  R  S  *  *  Q  I  C  L  *  R  Y  A  I  Q  Q  L  K  I  T  N  G  G  *  *  L  V  V  I  P  R  I  L  D  G  V  T  I  M  E  D  L  G  Q  :  C  F  C  G  C  *  R  L  P  A  L  R  L  D  G  H  K  L  Q  D  E  Q  L  I  L  L  R  A  A  Y  S  R  T  A  G  L  N  I  M  M  E  S  S  A  D  T  L  V  N  K  Q  G  S  T  R  H  G  Q  L  L  D  I  L  *  Q  R  C  C  W  R  I  L  H  T  W  E  *  S  L  W  R  R  T  S  K  *  S  L  *  S  S  D  H  L   </second_frame>
            <third_frame>   I  S  N  S  A  M  C  *  W  M  L  N  D  *  *  E  D   : G  C  L  W  I  S  Y  *  D  P  S  S  L  L  H  G  T  E  I  C  I  G  H  V  E  A  R  Y  R  R  E  R  I  H  *  E  N  S  E  A  P  A  C  L  E  L  S  Y  A  K  L  F  L  A  R  L  S  T  V  K  *  H  I  S  L  *  N  *  R  V  F  S  H  S  S  K  *  V  *  C  Y  S  *  F  N  P  R  V  G  I  *  F  C  A  Y  T  W  R  L  L  Y  W  K  R  *  S  C  K  D  G  L  Q  V  V  C  F  G  *  L  Y  C  N  L  V  F  P  C  H  S  R  T  S  F  C  Y  Y  G  S  H  R  I  P  L  G  G  A  S  S  R  Y  A  F  E  D  M  L  S  S  N  *  K  S  R  M  A  D  S  N  W  L  *  S  Q  E  Y  *  M  E  L  P  *  W  R  I  L  A  S :   A  F  V  V  A  N  G  C  L  H  *  D  W  T  A  T  N  C  K  T  S  N  *  S  C  *  E  P  L  T  Q  G  Q  L  A  *  I  L  *  W  K  A  R  Q  I  H  W  *  T  S  K  E  A  P  D  M  V  N  C  W  I  S  C  S  K  D  V  A  G  G  S  F  T  L  G  N  D  L  F  G  G  G  Q  A  N  E  A  C  N  Q  A  I  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66174" stop="66121"/>
                    <exon start="64496" stop="63938"/>
                    <exon start="63714" stop="63431"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRSALAMLKHDTEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPEWVFDFVPTRGGYFIGNVSPARMDFRWFALGNCIAILSSLATPEQASAIMDLIESRWEELVADMPLKICYPAIENHEWRIVTGCDPKNIRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIDLAESRLLKDSWPEYYDGKLGRYIGKQARKHQTWSIAGYLVAKMLLEDPSHLGMISLEEDKQMKPVIKRSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="68813" PGL_stop="66478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68813" e_stop="68739"/>
            <exon e_start="67236" e_stop="66835"/>
            <exon e_start="66552" e_stop="66478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="68813" e_stop="68739" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="68738" i_stop="67237" i_length="1502"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="67236" e_stop="66835" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66834" i_stop="66553" i_length="282"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66552" e_stop="66478" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68813" stop="68739"/>
              <exon start="67236" stop="66835"/>
              <exon start="66552" stop="66478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68801" stop="68739"/>
              <exon start="67236" stop="66835"/>
              <exon start="66552" stop="66490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGATCTCGCCGGCGCTCCGGCCATCATCATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAG : AGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAG : GTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATAGTCAAGAACTTC</gDNA_template>
            <first_frame> A  I  S  P  A  L  R  P  S  S  S  S  E  N  L  P  F  F  S  F  L  S  L  S  K  :  S  T  Q  E  D  *  R  F  K  V  T  M  E  E  T  G  L  R  N  V  G  S  N  C  S  I  S  E  I  D  D  Y  D  L  S  K  L  L  N  K  P  R  L  N  I  E  R  K  R  S  F  D  E  R  S  L  S  E  L  S  I  G  L  S  R  G  L  D  H  Y  E  S  A  S  P  G  Q  S  V  L  D  T  P  V  S  S  A  R  N  S  F  E  P  H  P  M  V  A  E  A  W  D  A  L  R  R  T  M  V  H  F  R  G  Q  P  V  G  T  I  A  A  I  D  H  A  S  E  E  V  L  N  Y  D  Q  :  V  F  V  R  D  F  V  P  S  A  L  A  F  L  M  N  G  E  P  D  I  V  K  N  F </first_frame>
            <second_frame>  R  S  R  R  R  S  G  H  H  H  R  R  K  I  F  H  S  S  H  F  S  L  Y  L  R :   V  L  R  R  I  E  G  L  R  *  P  W  K  K  L  D  *  E  M  W  A  P  T  A  P  F  L  K  *  M  I  M  I  S  L  S  F  *  T  S  Q  G  *  T  *  R  G  R  D  L  L  M  R  G  H  S  V  S  C  P  L  A  Y  L  E  V  *  I  I  M  K  V  P  H  L  A  N  Q  S  W  T  P  Q  F  H  Q  P  G  T  L  L  S  P  I  R  W  L  L  K  H  G  M  L  Y  A  A  L  W  F  I  F  V  V  N  Q  S  V  Q  *  R  Q  L  T  M  P  L  K  K  S  S  T  M  I  R :   F  L  F  E  I  L  C  L  V  L  W  P  S  *  *  M  E  S  Q  I  *  S  R  T   </second_frame>
            <third_frame>   D  L  A  G  A  P  A  I  I  I  V  G  K  S  S  I  L  L  I  S  L  S  I  *   : E  Y  S  G  G  L  K  V  *  G  D  H  G  R  N  W  T  E  K  C  G  L  Q  L  L  H  F  *  N  R  *  L  *  S  L  *  A  S  K  Q  A  K  A  K  H  R  E  E  E  I  F  *  *  E  V  T  Q  *  V  V  H  W  P  I  *  R  F  R  S  L  *  K  C  L  T  W  P  I  S  L  G  H  P  S  F  I  S  P  E  L  F  *  A  P  S  D  G  C  *  S  M  G  C  S  T  P  H  Y  G  S  F  S  W  S  T  S  R  Y  N  S  G  N  *  P  C  L  *  R  S  P  Q  L  *  S   : G  F  C  S  R  F  C  A  *  C  F  G  L  P  D  E  W  R  A  R  Y  S  Q  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67218" stop="66835"/>
                    <exon start="66552" stop="66478"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFKVTMEETGLRNVGSNCSISEIDDYDLSKLLNKPRLNIERKRSFDERSLSELSIGLSRGLDHYESASPGQSVLDTPVSSARNSFEPHPMVAEAWDALRRTMVHFRGQPVGTIAAIDHASEEVLNYDQVFVRDFVPSALAFLMNGEPDIVKNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="80913" PGL_stop="84505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80913" e_stop="81122"/>
            <exon e_start="81380" e_stop="81470"/>
            <exon e_start="82407" e_stop="82539"/>
            <exon e_start="83608" e_stop="83677"/>
            <exon e_start="83773" e_stop="83833"/>
            <exon e_start="83929" e_stop="84252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.757" e_score="0.986"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="80913" e_stop="81122" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.757">
            <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81380" e_stop="81470" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82407" e_stop="82539" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.765" acc_prob="0.979">
            <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83608" e_stop="83677" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.947">
            <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83773" e_stop="83833" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83929" e_stop="84252" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80913" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80990" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80996" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="83934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81010" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="83987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81015" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="84153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81015" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81015" stop="81122"/>
              <exon start="81380" stop="81470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81017" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="84018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81020" stop="81122"/>
              <exon start="81380" stop="81448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81041" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="84146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81050" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="83973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82483" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="84246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83775" stop="83833"/>
              <exon start="83929" stop="84252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCGGGTGTATGCTATTTTGGGCCGTCATGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT : TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA : TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT : CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG : CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG : ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</gDNA_template>
            <first_frame> G  R  V  Y  A  I  L  G  R  H  A  H  K  G  A  S  V  V  H  *  L  V  I  A  L  T  D  Y  Q  K  S  S  V  E  R  E  R  D  E  E  E  R  E  S  M  T  T  I  R  R  F  S  C  N  D  L  L  R  F  A  S  V  N  L  D  H  L  T  E  T  :  F  N  M  S  F  Y  M  T  Y  M  A  R  W  P  D  Y  F  H  V  A  K  A  P  G  G  H  I  M  G  Y   : I  M  G  K  V  E  G  Q  G  E  S  W  H  G  H  V  T  A  V  T  V  A  P  E  Y  R  R  Q  Q  L  A  K  K  L  M  Y  L  L  E  E  V  S  D  K  I :   D  K  A  Y  F  V  D  L  F  V  R  A  S  N  T  P  A  I  K  M  Y  E  K  :  L  D  Y  V  V  Y  R  R  V  L  R  Y  Y  S  G  E  E  D  G  L   : D  M  R  K  A  L  S  R  D  V  E  K  K  S  I  I  P  L  K  R  P  V  T  P  D  E  L  E  Y  D  *  V  G  K  S  C  Y  P  M  *  S  Y  L  S  R  S  *  V  *  G  I  D  K  S  C  L  E  M  Y  E  M  K  S  L  G  S  Y  L  *  Y  C  C  A  I  M  F  K  N  Q  V  L  E  F  L  A  L  C  I  C  L  H  A  I  C  S  F  N  I  L  N  C  *  I  F  V  T  Y  *  </first_frame>
            <second_frame>  A  G  C  M  L  F  W  A  V  M  L  T  K  G  H  R  W  S  I  N  W  L  S  P  L  Q  I  T  R  R  V  P  *  R  E  K  E  T  K  K  R  E  K  A  *  R  R  F  V  D  S  A  A  M  T  C  F  A  S  R  Q  *  I  W  I  I  L  L  K  L :   S  T  C  H  F  I  *  L  T  W  Q  D  G  R  I  I  S  M  L  Q  K  L  P  A  A  T  S  W  D  T  :  L  W  E  K  L  K  G  K  V  N  L  G  M  V  T  L  L  Q  *  L  W  L  L  N  I  G  G  S  N  *  P  R  N  *  C  T  C  W  K  K  S  V  I  R   : S  I  R  L  T  L  W  T  C  L  *  E  H  Q  T  H  Q  L  *  R  C  T  R  S :   L  I  T  *  Y  I  G  E  F  Y  A  I  T  Q  G  R  K  M  V  W  :  I  *  E  R  H  Y  R  E  M  *  K  R  S  L  S  S  L  L  N  D  R  *  L  Q  M  N  W  S  M  T  E  S  V  R  V  V  T  P  C  N  L  I  F  Q  E  A  K  F  R  V  S  T  S  L  V  *  K  C  M  R  *  R  V  W  V  L  I  Y  S  T  V  V  P  L  C  L  R  T  K  C  *  N  F  W  P  C  V  F  A  C  M  P  Y  V  L  L  I  F  *  I  V  K  F  L  *  L  I  E </second_frame>
            <third_frame>   P  G  V  C  Y  F  G  P  S  C  S  Q  R  G  I  G  G  P  L  T  G  Y  R  P  Y  R  L  P  E  E  F  R  R  E  R  K  R  R  R  R  E  R  K  H  D  D  D  S  *  I  Q  L  Q  *  L  A  S  L  R  V  S  E  F  G  S  S  Y  *  N   : F  Q  H  V  I  L  Y  D  L  H  G  K  M  A  G  L  F  P  C  C  K  S  S  R  R  P  H  H  G  I  H :   Y  G  K  S  *  R  A  R  *  I  L  A  W  S  R  Y  C  S  N  C  G  S  *  I  S  E  A  A  I  S  Q  E  I  D  V  P  A  G  R  S  Q  *  *  D  :  R  *  G  L  L  C  G  L  V  C  E  S  I  K  H  T  S  Y  K  D  V  R  E   : A  *  L  R  S  I  *  A  S  F  T  L  L  L  R  G  G  R  W  F  G :   Y  E  K  G  T  I  A  R  C  R  K  E  V  Y  H  P  S  *  T  T  G  N  S  R  *  I  G  V  *  L  S  R  *  E  L  L  P  H  V  I  L  S  F  K  K  L  S  L  G  Y  R  Q  V  L  S  R  N  V  *  D  E  E  S  G  F  L  S  I  V  L  L  C  H  Y  V  *  E  P  S  A  R  I  S  G  L  V  Y  L  L  A  C  H  M  F  F  *  Y  F  K  L  L  N  F  C  D  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80973" stop="81122"/>
                    <exon start="81380" stop="81470"/>
                    <exon start="82407" stop="82539"/>
                    <exon start="83608" stop="83677"/>
                    <exon start="83773" stop="83833"/>
                    <exon start="83929" stop="84020"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVIALTDYQKSSVERERDEEERESMTTIRRFSCNDLLRFASVNLDHLTETFNMSFYMTYMARWPDYFHVAKAPGGHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMYLLEEVSDKIDKAYFVDLFVRASNTPAIKMYEKLDYVVYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPVTPDELEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80913" e_stop="81122"/>
            <exon e_start="81380" e_stop="81470"/>
            <exon e_start="82407" e_stop="82539"/>
            <exon e_start="83608" e_stop="83677"/>
            <exon e_start="83773" e_stop="83833"/>
            <exon e_start="83929" e_stop="84151"/>
            <exon e_start="84479" e_stop="84505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.757" e_score="0.986"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="80913" e_stop="81122" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.757">
            <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81380" e_stop="81470" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82407" e_stop="82539" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.765" acc_prob="0.979">
            <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83608" e_stop="83677" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.947">
            <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83773" e_stop="83833" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="83929" e_stop="84151" e_length="223"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84152" i_stop="84478" i_length="327"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="84479" e_stop="84505" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80913" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80990" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80996" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="83934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81010" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="83987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81015" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="84151"/>
              <exon start="84479" stop="84505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81015" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81015" stop="81122"/>
              <exon start="81380" stop="81470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81017" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="84018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81020" stop="81122"/>
              <exon start="81380" stop="81448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81041" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="84146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81050" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="83973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCGGGTGTATGCTATTTTGGGCCGTCATGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT : TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA : TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT : CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG : CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG : ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTAT : GACAACAACATAAAAATATACAAAAAT</gDNA_template>
            <first_frame> G  R  V  Y  A  I  L  G  R  H  A  H  K  G  A  S  V  V  H  *  L  V  I  A  L  T  D  Y  Q  K  S  S  V  E  R  E  R  D  E  E  E  R  E  S  M  T  T  I  R  R  F  S  C  N  D  L  L  R  F  A  S  V  N  L  D  H  L  T  E  T  :  F  N  M  S  F  Y  M  T  Y  M  A  R  W  P  D  Y  F  H  V  A  K  A  P  G  G  H  I  M  G  Y   : I  M  G  K  V  E  G  Q  G  E  S  W  H  G  H  V  T  A  V  T  V  A  P  E  Y  R  R  Q  Q  L  A  K  K  L  M  Y  L  L  E  E  V  S  D  K  I :   D  K  A  Y  F  V  D  L  F  V  R  A  S  N  T  P  A  I  K  M  Y  E  K  :  L  D  Y  V  V  Y  R  R  V  L  R  Y  Y  S  G  E  E  D  G  L   : D  M  R  K  A  L  S  R  D  V  E  K  K  S  I  I  P  L  K  R  P  V  T  P  D  E  L  E  Y  D  *  V  G  K  S  C  Y  P  M  *  S  Y  L  S  R  S  *  V  *  G  I  D  K  S  C  L  E  M  Y  E  M  K  S  L  G  S  Y  L  *  Y  C  C  A  I  M :   T  T  T  *  K  Y  T  K   </first_frame>
            <second_frame>  A  G  C  M  L  F  W  A  V  M  L  T  K  G  H  R  W  S  I  N  W  L  S  P  L  Q  I  T  R  R  V  P  *  R  E  K  E  T  K  K  R  E  K  A  *  R  R  F  V  D  S  A  A  M  T  C  F  A  S  R  Q  *  I  W  I  I  L  L  K  L :   S  T  C  H  F  I  *  L  T  W  Q  D  G  R  I  I  S  M  L  Q  K  L  P  A  A  T  S  W  D  T  :  L  W  E  K  L  K  G  K  V  N  L  G  M  V  T  L  L  Q  *  L  W  L  L  N  I  G  G  S  N  *  P  R  N  *  C  T  C  W  K  K  S  V  I  R   : S  I  R  L  T  L  W  T  C  L  *  E  H  Q  T  H  Q  L  *  R  C  T  R  S :   L  I  T  *  Y  I  G  E  F  Y  A  I  T  Q  G  R  K  M  V  W  :  I  *  E  R  H  Y  R  E  M  *  K  R  S  L  S  S  L  L  N  D  R  *  L  Q  M  N  W  S  M  T  E  S  V  R  V  V  T  P  C  N  L  I  F  Q  E  A  K  F  R  V  S  T  S  L  V  *  K  C  M  R  *  R  V  W  V  L  I  Y  S  T  V  V  P  L   : *  Q  Q  H  K  N  I  Q  K  </second_frame>
            <third_frame>   P  G  V  C  Y  F  G  P  S  C  S  Q  R  G  I  G  G  P  L  T  G  Y  R  P  Y  R  L  P  E  E  F  R  R  E  R  K  R  R  R  R  E  R  K  H  D  D  D  S  *  I  Q  L  Q  *  L  A  S  L  R  V  S  E  F  G  S  S  Y  *  N   : F  Q  H  V  I  L  Y  D  L  H  G  K  M  A  G  L  F  P  C  C  K  S  S  R  R  P  H  H  G  I  H :   Y  G  K  S  *  R  A  R  *  I  L  A  W  S  R  Y  C  S  N  C  G  S  *  I  S  E  A  A  I  S  Q  E  I  D  V  P  A  G  R  S  Q  *  *  D  :  R  *  G  L  L  C  G  L  V  C  E  S  I  K  H  T  S  Y  K  D  V  R  E   : A  *  L  R  S  I  *  A  S  F  T  L  L  L  R  G  G  R  W  F  G :   Y  E  K  G  T  I  A  R  C  R  K  E  V  Y  H  P  S  *  T  T  G  N  S  R  *  I  G  V  *  L  S  R  *  E  L  L  P  H  V  I  L  S  F  K  K  L  S  L  G  Y  R  Q  V  L  S  R  N  V  *  D  E  E  S  G  F  L  S  I  V  L  L  C  H  Y  :  D  N  N  I  K  I  Y  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80973" stop="81122"/>
                    <exon start="81380" stop="81470"/>
                    <exon start="82407" stop="82539"/>
                    <exon start="83608" stop="83677"/>
                    <exon start="83773" stop="83833"/>
                    <exon start="83929" stop="84020"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVIALTDYQKSSVERERDEEERESMTTIRRFSCNDLLRFASVNLDHLTETFNMSFYMTYMARWPDYFHVAKAPGGHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMYLLEEVSDKIDKAYFVDLFVRASNTPAIKMYEKLDYVVYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPVTPDELEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83772" e_stop="83833"/>
            <exon e_start="83929" e_stop="84252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83772" e_stop="83833" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83929" e_stop="84252" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83772" stop="83833"/>
              <exon start="83929" stop="84252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83775" stop="83833"/>
              <exon start="83929" stop="84252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG : ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</gDNA_template>
            <first_frame> A  *  L  R  S  I  *  A  S  F  T  L  L  L  R  G  G  R  W  F  G :   Y  E  K  G  T  I  A  R  C  R  K  E  V  Y  H  P  S  *  T  T  G  N  S  R  *  I  G  V  *  L  S  R  *  E  L  L  P  H  V  I  L  S  F  K  K  L  S  L  G  Y  R  Q  V  L  S  R  N  V  *  D  E  E  S  G  F  L  S  I  V  L  L  C  H  Y  V  *  E  P  S  A  R  I  S  G  L  V  Y  L  L  A  C  H  M  F  F  *  Y  F  K  L  L  N  F  C  D  L  L   </first_frame>
            <second_frame>  L  D  Y  V  V  Y  R  R  V  L  R  Y  Y  S  G  E  E  D  G  L   : D  M  R  K  A  L  S  R  D  V  E  K  K  S  I  I  P  L  K  R  P  V  T  P  D  E  L  E  Y  D  *  V  G  K  S  C  Y  P  M  *  S  Y  L  S  R  S  *  V  *  G  I  D  K  S  C  L  E  M  Y  E  M  K  S  L  G  S  Y  L  *  Y  C  C  A  I  M  F  K  N  Q  V  L  E  F  L  A  L  C  I  C  L  H  A  I  C  S  F  N  I  L  N  C  *  I  F  V  T  Y  *  </second_frame>
            <third_frame>   L  I  T  *  Y  I  G  E  F  Y  A  I  T  Q  G  R  K  M  V  W  :  I  *  E  R  H  Y  R  E  M  *  K  R  S  L  S  S  L  L  N  D  R  *  L  Q  M  N  W  S  M  T  E  S  V  R  V  V  T  P  C  N  L  I  F  Q  E  A  K  F  R  V  S  T  S  L  V  *  K  C  M  R  *  R  V  W  V  L  I  Y  S  T  V  V  P  L  C  L  R  T  K  C  *  N  F  W  P  C  V  F  A  C  M  P  Y  V  L  L  I  F  *  I  V  K  F  L  *  L  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0286N17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="84797" PGL_stop="88836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84797" e_stop="85525"/>
            <exon e_start="87797" e_stop="87970"/>
            <exon e_start="88096" e_stop="88836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84797" e_stop="85525" e_length="729"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87797" e_stop="87970" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.946">
            <gDNA_intron_boundary i_start="87971" i_stop="88095" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88096" e_stop="88836" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84797" stop="85525"/>
              <exon start="87797" stop="87850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84798" stop="85333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84800" stop="85525"/>
              <exon start="87797" stop="87970"/>
              <exon start="88096" stop="88825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84929" stop="85525"/>
              <exon start="87797" stop="87970"/>
              <exon start="88096" stop="88188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84948" stop="85525"/>
              <exon start="87797" stop="87842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85244" stop="85525"/>
              <exon start="87797" stop="87970"/>
              <exon start="88096" stop="88295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85301" stop="85525"/>
              <exon start="87797" stop="87970"/>
              <exon start="88096" stop="88127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88134" stop="88708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88176" stop="88836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88459" stop="88829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88459" stop="88829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88495" stop="88829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217434" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG : AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT : GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAAATTGAGC</gDNA_template>
            <first_frame> I  *  T  V  C  L  Y  *  S  S  M  T  I  L  G  R  T  I  K  Q  F  Y  *  S  N  H  R  *  M  K  T  A  P  S  R  L  P  I  I  N  F  R  S  I  I  L  I  T  P  S  P  L  S  P  *  V  T  K  G  G  R  E  R  K  K  K  G  D  F  F  C  V  F  L  N  *  K  M  Q  L  K  S  V  N  T  F  A  I  T  I  M  L  G  F  T  L  I  I  L  F  F  S  G  F  L  D  F  P  L  H  T  S  S  S  I  P  S  T  K  N  Q  I  L  T  T  I  S  V  S  E  P  D  P  F  S  N  L  L  S  T  F  K  K  W  D  S  Q  V  G  C  A  K  F  R  G  E  H  K  G  L  L  G  N  G  L  L  L  D  S  S  S  G  S  L  Q  N  V  D  D  G  E  L  K  C  N  E  L  K  M  D  H  V  S  V  L  V  K  G  W  T  W  I  P  D  N  L  D  N  L  Y  S  C  R  C  G  L  S  C  L  W  T  K  S  S  V  V  A  D  K  P  D  A  L  L  F  E  T  A  T  P  P  V  E  :  R  R  R  G  D  P  L  R  V  Y  M  D  L  E  A  G  R  K  K  S  G  Y  E  D  I  F  I  G  Y  H  A  E  D  D  V  Q  S  T  Y  A  G  A  L  F  H  N  N  R  N  Y  H  L  S  P  Y  K  N  N  :  D  T  L  V  Y  W  S  S  S  R  C  L  P  Q  R  N  Q  L  A  K  R  L  L  S  L  L  P  S  H  S  F  G  K  C  L  N  N  V  G  G  L  D  K  A  L  S  F  Y  P  E  C  I  K  D  S  N  E  A  P  K  W  W  D  H  L  H  C  A  M  S  H  Y  K  F  V  L  A  I  E  N  T  K  T  E  S  Y  V  T  E  K  L  F  Y  A  L  D  S  G  A  V  P  I  Y  F  G  A  P  N  V  W  D  F  V  P  P  H  S  I  I  D  G  S  K  F  S  S  L  E  E  L  A  S  Y  V  K  A  I  A  N  N  P  V  A  Y  A  E  Y  H  A  W  R  R  C  G  V  L  G  N  Y  R  K  T  R  A  A  S  L  D  T  L  P  C  R  L  C  E  A  I  S  K  R  N  G  R  N  A  K  A  S  *  L  F  N  S  K  A  T  G  Y  *  A  L  N  C  V  L  R  S  T  S  V  V  S  K  Q  C  M  S  C  *  D  L  G  Y  S  G  L  *  R  S  Q  T  L  T  N  *  Y  Y  I  N  F  G  L  T  K  L  S </first_frame>
            <second_frame>  S  K  Q  Y  A  Y  I  S  L  P  *  Q  Y  *  V  E  Q  S  N  N  F  T  N  L  T  T  G  R  *  K  L  P  L  Q  D  Y  Q  L  S  I  S  D  R  L  F  *  *  P  L  P  L  S  L  L  E  *  P  R  E  G  E  R  E  K  K  K  V  I  F  F  V  Y  S  *  T  E  K  C  N  *  N  L  S  T  H  L  Q  S  Q  S  C  W  V  L  H  L  S  F  Y  S  S  L  D  F  L  I  S  H  F  T  L  L  L  Q  S  H  Q  R  K  I  K  S  *  P  P  S  Q  F  P  S  P  T  L  L  V  T  C  *  A  L  L  R  N  G  I  L  K  W  V  V  L  S  L  G  G  N  I  K  G  Y  *  E  M  G  C  C  W  I  L  L  L  V  L  C  K  M  L  M  M  V  S  *  S  V  M  S  *  R  W  I  M  *  V  Y  *  L  K  G  G  L  G  F  L  I  I  W  I  I  C  T  L  V  G  V  G  L  A  V  C  G  L  N  L  R  L  L  L  I  N  L  M  L  C  C  L  R  Q  L  L  L  L  L  R :   D  V  E  V  I  H  Y  V  Y  T  W  I  L  K  L  V  E  R  N  Q  G  M  R  I  Y  L  L  A  I  M  Q  K  T  M  S  S  Q  P  M  R  A  H  F  F  I  T  I  G  I  I  T  F  L  L  I  R  T  M :   I  L  L  F  T  G  L  H  H  V  V  F  L  K  G  T  S  L  P  N  V  Y  S  A  C  Y  P  P  I  H  L  A  S  A  *  T  M  L  E  V  *  T  R  H  S  H  F  I  L  S  V  S  R  I  L  M  K  H  P  N  G  G  I  I  C  I  A  Q  C  H  I  T  S  L  S  L  R  L  R  T  P  R  Q  K  V  M  *  Q  R  S  Y  F  T  H  W  T  L  V  Q  S  P  F  I  L  V  P  R  M  S  G  T  L  Y  L  H  I  Q  *  L  M  E  A  S  L  A  L  W  R  N  W  P  R  T  L  R  P  L  L  I  I  Q  *  L  M  Q  S  T  M  L  G  E  D  V  A  C  W  V  T  I  E  K  H  G  Q  L  V  W  I  P  C  L  A  G  Y  V  K  P  S  V  K  E  M  E  E  M  Q  K  P  L  D  Y  S  T  A  K  L  Q  G  T  R  L  *  I  V  Y  L  D  Q  L  V  L  F  L  N  S  A  C  L  V  R  T  *  D  I  V  A  C  R  D  L  K  P  L  Q  I  N  T  T  *  I  L  V  *  Q  N  *   </second_frame>
            <third_frame>   L  N  S  M  L  I  L  V  F  H  D  N  I  R  S  N  N  Q  T  I  L  L  I  *  P  P  V  D  E  N  C  P  F  K  T  T  N  Y  Q  F  Q  I  D  Y  F  D  N  P  F  P  S  L  S  L  S  D  Q  G  R  E  R  E  K  K  K  R  *  F  F  L  C  I  L  E  L  K  N  A  I  E  I  C  Q  H  I  C  N  H  N  H  V  G  F  Y  T  Y  H  S  I  L  L  W  I  S  *  F  P  T  S  H  F  F  F  N  P  I  N  E  K  S  N  L  D  H  H  L  S  F  R  A  R  P  F  *  *  L  V  E  H  F  *  E  M  G  F  S  S  G  L  C  *  V  *  G  G  T  *  R  V  I  R  K  W  V  V  V  G  F  F  F  W  F  F  A  K  C  *  *  W  *  V  E  V  *  *  A  K  D  G  S  C  E  C  I  S  *  R  V  D  L  D  S  *  *  F  G  *  F  V  L  L  S  V  W  A  *  L  F  V  D  *  I  F  G  C  C  *  *  T  *  C  F  V  V  *  D  S  Y  S  S  C  *   : E  T  S  R  *  S  I  T  C  I  H  G  S  *  S  W  *  K  E  I  R  V  *  G  Y  I  Y  W  L  S  C  R  R  R  C  P  V  N  L  C  G  R  T  F  S  *  Q  S  E  L  S  P  F  S  L  *  E  Q   : *  Y  S  C  L  L  V  F  I  T  L  S  S  S  K  E  P  A  C  Q  T  S  T  Q  L  A  T  L  P  F  I  W  Q  V  P  E  Q  C  W  R  S  R  Q  G  T  L  I  L  S  *  V  Y  Q  G  F  *  *  S  T  Q  M  V  G  S  F  A  L  R  N  V  T  L  Q  V  C  P  C  D  *  E  H  Q  D  R  K  L  C  N  R  E  V  I  L  R  T  G  L  W  C  S  P  H  L  F  W  C  P  E  C  L  G  L  C  T  S  T  F  N  N  *  W  K  Q  V  *  L  F  G  G  I  G  L  V  R  *  G  H  C  *  *  S  S  S  L  C  R  V  P  C  L  E  K  M  W  R  A  G  *  L  *  K  N  T  G  S  *  S  G  Y  L  A  L  Q  V  M  *  S  H  Q  *  K  K  W  K  K  C  K  S  L  L  T  I  Q  Q  Q  S  Y  R  V  L  G  F  K  L  C  T  *  I  N  *  C  C  F  *  T  V  H  V  L  L  G  L  R  I  *  W  L  V  E  I  S  N  P  Y  K  L  I  L  H  K  F  W  S  N  K  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85025" stop="85525"/>
                    <exon start="87797" stop="87970"/>
                    <exon start="88096" stop="88665"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMQLKSVNTFAITIMLGFTLIILFFSGFLDFPLHTSSSIPSTKNQILTTISVSEPDPFSNLLSTFKKWDSQVGCAKFRGEHKGLLGNGLLLDSSSGSLQNVDDGELKCNELKMDHVSVLVKGWTWIPDNLDNLYSCRCGLSCLWTKSSVVADKPDALLFETATPPVERRRGDPLRVYMDLEAGRKKSGYEDIFIGYHAEDDVQSTYAGALFHNNRNYHLSPYKNNDTLVYWSSSRCLPQRNQLAKRLLSLLPSHSFGKCLNNVGGLDKALSFYPECIKDSNEAPKWWDHLHCAMSHYKFVLAIENTKTESYVTEKLFYALDSGAVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKAIANNPVAYAEYHAWRRCGVLGNYRKTRAASLDTLPCRLCEAISKRNGRNAKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="89826" PGL_stop="89372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89826" e_stop="89372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="89826" e_stop="89372" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89826" stop="89372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355524" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCTATTCACAAATGATATATCCAATTCCTGATAGGAGCTTGTGGAATGAGGCTGGGGAGGGTACAGACGGTGGGGGAGCAAATGTTGATATTATAATTCGACCACCAAAAACCCGACGTCCTCCTGGCAGGCCCAAAAAGAAGGTTCTTCGCATAGAGAGTTTCAAGCGTCCAAAGAGAGTCGTTCAATGTGGTCGATGCCATATGTTGGGACATTCTCAGAAAAAATGCTCGTTGCCTAGTTAAATCCTTGGTTAGTTGCCAGCTTTCTTTGCTCATGCCGAAAACTTTCATTAAAGAGTCTCAAGCTGTATGTATTTTAGTAATGGCTTAGTCATGAGATTGTTACTTGGCCTCTGCCTTATCAGTTCTGCAGTTGTCTTTGAATATATCAGGAACATATTGTGTACCTTGTACTTCATAATACTATATGGCTAATTGAGTTCCCATCGA</gDNA_template>
            <first_frame> K  P  I  H  K  *  Y  I  Q  F  L  I  G  A  C  G  M  R  L  G  R  V  Q  T  V  G  E  Q  M  L  I  L  *  F  D  H  Q  K  P  D  V  L  L  A  G  P  K  R  R  F  F  A  *  R  V  S  S  V  Q  R  E  S  F  N  V  V  D  A  I  C  W  D  I  L  R  K  N  A  R  C  L  V  K  S  L  V  S  C  Q  L  S  L  L  M  P  K  T  F  I  K  E  S  Q  A  V  C  I  L  V  M  A  *  S  *  D  C  Y  L  A  S  A  L  S  V  L  Q  L  S  L  N  I  S  G  T  Y  C  V  P  C  T  S  *  Y  Y  M  A  N  *  V  P  I   </first_frame>
            <second_frame>  N  L  F  T  N  D  I  S  N  S  *  *  E  L  V  E  *  G  W  G  G  Y  R  R  W  G  S  K  C  *  Y  Y  N  S  T  T  K  N  P  T  S  S  W  Q  A  Q  K  E  G  S  S  H  R  E  F  Q  A  S  K  E  S  R  S  M  W  S  M  P  Y  V  G  T  F  S  E  K  M  L  V  A  *  L  N  P  W  L  V  A  S  F  L  C  S  C  R  K  L  S  L  K  S  L  K  L  Y  V  F  *  *  W  L  S  H  E  I  V  T  W  P  L  P  Y  Q  F  C  S  C  L  *  I  Y  Q  E  H  I  V  Y  L  V  L  H  N  T  I  W  L  I  E  F  P  S  </second_frame>
            <third_frame>   T  Y  S  Q  M  I  Y  P  I  P  D  R  S  L  W  N  E  A  G  E  G  T  D  G  G  G  A  N  V  D  I  I  I  R  P  P  K  T  R  R  P  P  G  R  P  K  K  K  V  L  R  I  E  S  F  K  R  P  K  R  V  V  Q  C  G  R  C  H  M  L  G  H  S  Q  K  K  C  S  L  P  S  *  I  L  G  *  L  P  A  F  F  A  H  A  E  N  F  H  *  R  V  S  S  C  M  Y  F  S  N  G  L  V  M  R  L  L  L  G  L  C  L  I  S  S  A  V  V  F  E  Y  I  R  N  I  L  C  T  L  Y  F  I  I  L  Y  G  *  L  S  S  H  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89824" stop="89579"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYSQMIYPIPDRSLWNEAGEGTDGGGANVDIIIRPPKTRRPPGRPKKKVLRIESFKRPKRVVQCGRCHMLGHSQKKCSLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="106126" PGL_stop="107138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106126" e_stop="107138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="106126" e_stop="107138" e_length="1013"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106126" stop="106846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106547" stop="107138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106586" stop="107022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106586" stop="107022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGCTGAAAAAATTATGGAAAATTGAGCTGTTTCAGAATAAGTTGACAGGGGAACTTCCTGTAGAACTGGCAGAGCTCTCTCTTTTGCAGGAATTTGATATCTCTAGCAACCATATGTATGGGAAGCTGCCTCCAGAAATTGGGAACCTGAAGAAGTTAACAGTTTTTCATGTATTCATGAATAACTTCTCTGGTGAAATTCCTCCTGGTTTTGGAGATATGCAGCATCTTAATGGCTTTTCCGTGTACAGGAACAATTTTTCTGGGGCATTTCCAGCAAATCTTGGTCGGTTTTCGCCCCTGAATAGCATAGACATATCTGAAAACAAGTTTACTGGTGGATTCCCAAAGTACTTGTGCCAAAATGGGAACCTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCGAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTTCACACAACAGACTCACTGGTACAATACCAACTAGCTTGGACAATCTGAAGCTGTCTTCATTGGATCTCTCTAACAACCAGCTATCAGGAGAGGTATCATTAGATCTTTTAACGCTG</gDNA_template>
            <first_frame> A  S  *  K  N  Y  G  K  L  S  C  F  R  I  S  *  Q  G  N  F  L  *  N  W  Q  S  S  L  F  C  R  N  L  I  S  L  A  T  I  C  M  G  S  C  L  Q  K  L  G  T  *  R  S  *  Q  F  F  M  Y  S  *  I  T  S  L  V  K  F  L  L  V  L  E  I  C  S  I  L  M  A  F  P  C  T  G  T  I  F  L  G  H  F  Q  Q  I  L  V  G  F  R  P  *  I  A  *  T  Y  L  K  T  S  L  L  V  D  S  Q  S  T  C  A  K  M  G  T  C  S  F  C  *  L  L  R  T  V  S  Q  G  S  F  R  V  L  T  R  R  A  S  L  Y  R  D  *  G  S  V  R  I  N  F  L  G  K  F  P  V  M  Y  G  D  F  Q  M  Y  *  W  W  I  S  V  I  T  N  S  V  E  L  C  P  R  K  L  G  L  L  L  A  *  I  S  W  Y  Y  Q  I  T  D  F  Q  V  S  F  Q  K  N  L  G  N  S  H  S  W  K  G  F  T  W  I  T  I  T  S  R  V  Q  Y  L  L  N  L  E  N  *  S  K  F  H  L  C  I  W  R  K  T  H  S  P  G  L  S  H  Q  N  W  V  N  F  L  G  L  Q  T  *  I  L  L  Q  I  F  L  Q  V  A  F  P  I  P  Y  Q  *  *  P  L  *  T  L  *  I  F  H  T  T  D  S  L  V  Q  Y  Q  L  A  W  T  I  *  S  C  L  H  W  I  S  L  T  T  S  Y  Q  E  R  Y  H  *  I  F  *  R   </first_frame>
            <second_frame>  Q  A  E  K  I  M  E  N  *  A  V  S  E  *  V  D  R  G  T  S  C  R  T  G  R  A  L  S  F  A  G  I  *  Y  L  *  Q  P  Y  V  W  E  A  A  S  R  N  W  E  P  E  E  V  N  S  F  S  C  I  H  E  *  L  L  W  *  N  S  S  W  F  W  R  Y  A  A  S  *  W  L  F  R  V  Q  E  Q  F  F  W  G  I  S  S  K  S  W  S  V  F  A  P  E  *  H  R  H  I  *  K  Q  V  Y  W  W  I  P  K  V  L  V  P  K  W  E  P  A  V  F  A  S  Y  *  E  Q  F  L  R  G  V  S  E  Y  L  L  V  V  Q  A  F  T  E  I  E  G  Q  *  E  S  T  F  W  E  N  S  Q  *  C  M  G  T  S  K  C  T  D  G  G  F  Q  *  *  R  I  Q  W  N  Y  V  P  G  N  W  G  C  Y  *  P  E  S  V  G  I  I  K  *  Q  I  F  R  *  A  S  K  R  T  W  E  T  H  T  V  G  K  A  L  L  G  *  Q  *  L  L  G  C  N  T  F  *  T  W  K  T  K  A  N  F  I  F  A  F  G  E  K  L  I  L  R  D  Y  P  I  R  I  G  *  I  F  *  A  C  R  P  E  S  C  F  K  S  S  Y  R  *  H  S  Q  F  L  I  N  N  D  L  F  E  L  S  E  S  F  T  Q  Q  T  H  W  Y  N  T  N  *  L  G  Q  S  E  A  V  F  I  G  S  L  *  Q  P  A  I  R  R  G  I  I  R  S  F  N  A  </second_frame>
            <third_frame>   K  L  K  K  L  W  K  I  E  L  F  Q  N  K  L  T  G  E  L  P  V  E  L  A  E  L  S  L  L  Q  E  F  D  I  S  S  N  H  M  Y  G  K  L  P  P  E  I  G  N  L  K  K  L  T  V  F  H  V  F  M  N  N  F  S  G  E  I  P  P  G  F  G  D  M  Q  H  L  N  G  F  S  V  Y  R  N  N  F  S  G  A  F  P  A  N  L  G  R  F  S  P  L  N  S  I  D  I  S  E  N  K  F  T  G  G  F  P  K  Y  L  C  Q  N  G  N  L  Q  F  L  L  A  I  E  N  S  F  S  G  E  F  P  S  T  Y  S  S  C  K  P  L  Q  R  L  R  V  S  K  N  Q  L  S  G  K  I  P  S  D  V  W  G  L  P  N  V  L  M  V  D  F  S  D  N  E  F  S  G  T  M  S  P  E  I  G  A  A  T  S  L  N  Q  L  V  L  S  N  N  R  F  S  G  E  L  P  K  E  L  G  K  L  T  Q  L  E  R  L  Y  L  D  N  N  N  F  S  G  A  I  P  S  E  L  G  K  L  K  Q  I  S  S  L  H  L  E  K  N  S  F  S  G  T  I  P  S  E  L  G  E  F  S  R  L  A  D  L  N  L  A  S  N  L  L  T  G  S  I  P  N  S  L  S  I  M  T  S  L  N  S  L  N  L  S  H  N  R  L  T  G  T  I  P  T  S  L  D  N  L  K  L  S  S  L  D  L  S  N  N  Q  L  S  G  E  V  S  L  D  L  L  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106128" stop="107138"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKKLWKIELFQNKLTGELPVELAELSLLQEFDISSNHMYGKLPPEIGNLKKLTVFHVFMNNFSGEIPPGFGDMQHLNGFSVYRNNFSGAFPANLGRFSPLNSIDISENKFTGGFPKYLCQNGNLQFLLAIENSFSGEFPSTYSSCKPLQRLRVSKNQLSGKIPSDVWGLPNVLMVDFSDNEFSGTMSPEIGAATSLNQLVLSNNRFSGELPKELGKLTQLERLYLDNNNFSGAIPSELGKLKQISSLHLEKNSFSGTIPSELGEFSRLADLNLASNLLTGSIPNSLSIMTSLNSLNLSHNRLTGTIPTSLDNLKLSSLDLSNNQLSGEVSLDLLTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="113068" PGL_stop="108608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113068" e_stop="112811"/>
            <exon e_start="112495" e_stop="112397"/>
            <exon e_start="111310" e_stop="111182"/>
            <exon e_start="111065" e_stop="110937"/>
            <exon e_start="110335" e_stop="110189"/>
            <exon e_start="109798" e_stop="109724"/>
            <exon e_start="109111" e_stop="108608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113068" e_stop="112811" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112495" e_stop="112397" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111310" e_stop="111182" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.475" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111065" e_stop="110937" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.997">
            <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="110335" e_stop="110189" e_length="147"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109798" e_stop="109724" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.931">
            <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="109111" e_stop="108608" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113068" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113057" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113057" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113057" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113050" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113050" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113049" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113049" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113047" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="109045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113046" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113038" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="109038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113037" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113037" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113037" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113031" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113028" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113013" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113007" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112980" stop="112827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112974" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112973" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112971" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112943" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112939" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="109045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112939" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112448" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111217" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111003" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110987" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110299" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110233" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110229" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109785" stop="109724"/>
              <exon start="109111" stop="108835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109780" stop="109724"/>
              <exon start="109111" stop="108608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109101" stop="108634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109097" stop="108634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109075" stop="108691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG : GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG : TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG : ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA : GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG : GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG : GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAGCAGAAAAAAA</gDNA_template>
            <first_frame> C  K  R  K  K  E  K  H  *  D  L  Y  L  A  R  S  R  S  A  M  A  S  C  C  S  L  S  F  S  T  V  S  S  K  P  N  K  P  Y  S  S  P  I  S  S  S  L  E  L  P  F  T  S  Q  L  P  F  S  K  K  Y  S  L  Y  S  N  H  T  L  L  Q  T  Q  C  R  K  T  Q  S  P  D  C  P  S  F  L  :  V  V  G  S  A  K  K  Q  E  P  L  R  V  M  I  S  G  A  P  A  S  G  K  G  T  Q  C  E  L  I  T  K  K  :  Y  D  L  V  H  I  A  A  G  D  L  L  R  A  E  I  A  A  G  T  E  N  G  R  R  A  K  E  Y  M  D  K  G  Q  L  V  P  N  E  I  V  V  T  :  M  V  K  E  R  L  M  C  P  D  S  Q  E  K  G  W  L  L  D  G  Y  P  R  S  L  S  Q  A  V  A  L  K  E  F  Q  P  N  L  F  I  L  L  E  :  V  P  E  E  I  L  V  E  R  V  V  G  R  R  L  D  P  V  T  G  R  I  Y  H  L  K  Y  S  P  P  E  T  D  E  I  A  A  R  L  T  Q  R  F  D  D  T  E  E  K  :  V  K  L  R  L  H  T  H  R  Q  N  V  E  S  V  L  S  M  Y  K  D  T  I  F  Q  :  V  D  G  S  V  S  K  E  E  V  F  A  Q  I  D  G  A  L  T  Q  L  L  E  A  K  E  *  R  F  G  T  V  M  S  *  R  S  G  K  I  C  R  M  Y  H  V  I  L  R  R  I  I  E  D  K  R  V  T  L  L  V  A  I  P  L  I  Q  M  Y  E  M  F  M  Y  I  V  F  A  S  N  Y  L  C  G  Y  S  L  N  Q  I  Q  S  L  L  Q  N  L  F  C  C  K  A  Q  L  A  S  D  I  V  S  F  E  F  T  P  I  R  L  *  D  V  I  R  V  *  D  L  L  I  Y  V  L  N  I  S  H  V  F  L  P  I  W  D  S  *  S  W  T  *  I  P  R  F  L  I  N  P  T  S  E  V  S  N  H  S  R  K  K </first_frame>
            <second_frame>  V  K  E  K  K  K  N  T  E  I  S  I  *  H  G  A  E  A  P  W  L  R  A  V  H  *  A  S  Q  Q  S  L  Q  S  L  T  S  L  T  H  H  Q  F  L  L  L  L  S  S  P  L  L  P  S  C  H  F  L  K  N  I  H  F  I  P  I  I  P  F  S  K  L  N  A  G  K  P  N  H  R  I  V  P  V  S  W :   L  W  D  L  R  K  S  K  N  L  *  G  *  *  Y  R  E  L  L  L  L  V  K  E  R  N  A  S  S  L  P  R  S :   T  I  W  C  I  L  L  L  E  I  Y  *  G  L  K  L  L  Q  A  L  K  M  G  G  E  Q  R  S  I  W  I  K  D  N  W  Y  Q  T  R  *  L  *  R :   W  S  K  S  G  *  C  V  Q  T  L  K  K  R  V  G  F  *  M  D  I  L  G  A  C  L  K  Q  *  L  S  K  S  S  S  Q  T  F  S  F  F  W  K :   Y  L  K  R  Y  L  L  R  E  W  L  A  V  D  *  I  L  *  L  G  E  Y  T  I  *  S  I  L  R  Q  R  P  M  K  S  L  Q  G  L  P  S  A  L  M  I  Q  K  K  R :   *  S  C  V  C  T  L  T  V  K  M  W  N  Q  F  S  Q  C  T  K  I  L  Y  S  R :   W  T  G  A  F  P  K  R  K  Y  L  L  K  L  M  V  H  *  L  N  F  L  K  Q  R  S  E  D  L  E  P  *  C  H  R  D  Q  E  K  S  A  E  C  T  M  *  Y  S  G  G  S  S  K  T  K  E  *  H  C  W  L  L  S  L  L  Y  K  C  M  K  C  L  C  I  S  Y  L  L  P  T  I  Y  V  D  I  H  *  I  R  F  K  V  Y  Y  K  T  C  F  V  V  R  P  S  S  L  V  I  L  L  A  S  S  L  H  L  S  G  F  K  T  S  L  G  C  K  T  C  L  F  M  Y  S  T  Y  L  M  Y  F  C  L  F  G  T  L  N  H  G  H  K  Y  P  D  F  *  L  I  Q  L  L  K  F  P  I  T  A  E  K   </second_frame>
            <third_frame>   *  K  K  K  R  K  T  L  R  S  L  F  S  T  E  Q  K  R  H  G  F  V  L  F  I  E  L  L  N  S  L  F  K  A  *  Q  A  L  L  I  T  N  F  F  F  S  *  A  P  L  Y  F  P  V  A  I  F  *  K  I  F  T  L  F  Q  S  Y  P  S  P  N  S  M  P  E  N  P  I  T  G  L  S  Q  F  L   : G  C  G  I  C  E  K  A  R  T  F  E  G  N  D  I  G  S  S  C  F  W  *  R  N  A  M  R  A  H  Y  Q  E   : V  R  F  G  A  Y  C  C  W  R  F  I  E  G  *  N  C  C  R  H  *  K  W  E  E  S  K  G  V  Y  G  *  R  T  I  G  T  K  R  D  S  C  N   : D  G  Q  R  A  V  D  V  S  R  L  S  R  K  G  L  A  F  R  W  I  S  S  E  L  V  S  S  S  S  S  Q  R  V  P  A  K  P  F  H  S  S  G   : S  T  *  R  D  T  C  *  E  S  G  W  P  *  T  R  S  C  N  W  E  N  I  P  F  E  V  F  S  A  R  D  R  *  N  R  C  K  A  Y  P  A  L  *  *  Y  R  R  K   : G  E  A  A  S  A  H  S  P  S  K  C  G  I  S  S  L  N  V  Q  R  Y  Y  I  P   : G  G  R  E  R  F  Q  R  G  S  I  C  S  N  *  W  C  I  N  S  T  S  *  S  K  G  V  K  I  W  N  R  N  V  I  E  I  R  K  N  L  Q  N  V  P  C  N  T  Q  E  D  H  R  R  Q  K  S  N  I  V  G  C  Y  P  S  Y  T  N  V  *  N  V  Y  V  Y  R  I  C  F  Q  L  S  M  W  I  F  I  E  S  D  S  K  F  T  T  K  L  V  L  L  *  G  P  A  R  *  *  Y  C  *  L  R  V  Y  T  Y  P  A  L  R  R  H  *  G  V  R  P  A  Y  L  C  T  Q  H  I  S  C  I  F  A  Y  L  G  L  L  I  M  D  I  N  T  Q  I  S  D  *  S  N  F  *  S  F  Q  S  Q  Q  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113041" stop="112811"/>
                    <exon start="112495" stop="112397"/>
                    <exon start="111310" stop="111182"/>
                    <exon start="111065" stop="110937"/>
                    <exon start="110335" stop="110189"/>
                    <exon start="109798" stop="109724"/>
                    <exon start="109111" stop="109031"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLYLARSRSAMASCCSLSFSTVSSKPNKPYSSPISSSLELPFTSQLPFSKKYSLYSNHTLLQTQCRKTQSPDCPSFLVVGSAKKQEPLRVMISGAPASGKGTQCELITKKYDLVHIAAGDLLRAEIAAGTENGRRAKEYMDKGQLVPNEIVVTMVKERLMCPDSQEKGWLLDGYPRSLSQAVALKEFQPNLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPPETDEIAARLTQRFDDTEEKVKLRLHTHRQNVESVLSMYKDTIFQVDGSVSKEEVFAQIDGALTQLLEAKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109006" stop="108755"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSGKICRMYHVILRRIIEDKRVTLLVAIPLIQMYEMFMYIVFASNYLCGYSLNQIQSLLQNLFCCKAQLASDIVSFEFTPIRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113057" e_stop="112811"/>
            <exon e_start="112495" e_stop="112397"/>
            <exon e_start="111310" e_stop="111182"/>
            <exon e_start="111065" e_stop="110937"/>
            <exon e_start="110335" e_stop="110189"/>
            <exon e_start="109798" e_stop="109659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113057" e_stop="112811" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112495" e_stop="112397" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111310" e_stop="111182" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.475" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111065" e_stop="110937" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.997">
            <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="110335" e_stop="110189" e_length="147"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="109798" e_stop="109659" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113057" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113057" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113057" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113050" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113050" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113049" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113049" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113048" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113046" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113040" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113037" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113037" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113037" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113031" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113028" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113013" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113007" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112980" stop="112827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112974" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112973" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112971" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112971" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112943" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112939" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="111012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112448" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG : GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG : TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG : ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA : GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG : GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATC</gDNA_template>
            <first_frame> K  R  K  T  L  R  S  L  F  S  T  E  Q  K  R  H  G  F  V  L  F  I  E  L  L  N  S  L  F  K  A  *  Q  A  L  L  I  T  N  F  F  F  S  *  A  P  L  Y  F  P  V  A  I  F  *  K  I  F  T  L  F  Q  S  Y  P  S  P  N  S  M  P  E  N  P  I  T  G  L  S  Q  F  L   : G  C  G  I  C  E  K  A  R  T  F  E  G  N  D  I  G  S  S  C  F  W  *  R  N  A  M  R  A  H  Y  Q  E   : V  R  F  G  A  Y  C  C  W  R  F  I  E  G  *  N  C  C  R  H  *  K  W  E  E  S  K  G  V  Y  G  *  R  T  I  G  T  K  R  D  S  C  N   : D  G  Q  R  A  V  D  V  S  R  L  S  R  K  G  L  A  F  R  W  I  S  S  E  L  V  S  S  S  S  S  Q  R  V  P  A  K  P  F  H  S  S  G   : S  T  *  R  D  T  C  *  E  S  G  W  P  *  T  R  S  C  N  W  E  N  I  P  F  E  V  F  S  A  R  D  R  *  N  R  C  K  A  Y  P  A  L  *  *  Y  R  R  K   : G  E  A  A  S  A  H  S  P  S  K  C  G  I  S  S  L  N  V  Q  R  Y  Y  I  P  G  I  L  F  A  T  D  V  V  Q  L  L  H  S  G  M  Q  I  E  T  L  I </first_frame>
            <second_frame>  K  E  K  H  *  D  L  Y  L  A  R  S  R  S  A  M  A  S  C  C  S  L  S  F  S  T  V  S  S  K  P  N  K  P  Y  S  S  P  I  S  S  S  L  E  L  P  F  T  S  Q  L  P  F  S  K  K  Y  S  L  Y  S  N  H  T  L  L  Q  T  Q  C  R  K  T  Q  S  P  D  C  P  S  F  L  :  V  V  G  S  A  K  K  Q  E  P  L  R  V  M  I  S  G  A  P  A  S  G  K  G  T  Q  C  E  L  I  T  K  K  :  Y  D  L  V  H  I  A  A  G  D  L  L  R  A  E  I  A  A  G  T  E  N  G  R  R  A  K  E  Y  M  D  K  G  Q  L  V  P  N  E  I  V  V  T  :  M  V  K  E  R  L  M  C  P  D  S  Q  E  K  G  W  L  L  D  G  Y  P  R  S  L  S  Q  A  V  A  L  K  E  F  Q  P  N  L  F  I  L  L  E  :  V  P  E  E  I  L  V  E  R  V  V  G  R  R  L  D  P  V  T  G  R  I  Y  H  L  K  Y  S  P  P  E  T  D  E  I  A  A  R  L  T  Q  R  F  D  D  T  E  E  K  :  V  K  L  R  L  H  T  H  R  Q  N  V  E  S  V  L  S  M  Y  K  D  T  I  F  Q  V  F  F  L  P  Q  M  W  C  S  C  F  T  R  E  C  R  L  K  H  S   </second_frame>
            <third_frame>   K  K  N  T  E  I  S  I  *  H  G  A  E  A  P  W  L  R  A  V  H  *  A  S  Q  Q  S  L  Q  S  L  T  S  L  T  H  H  Q  F  L  L  L  L  S  S  P  L  L  P  S  C  H  F  L  K  N  I  H  F  I  P  I  I  P  F  S  K  L  N  A  G  K  P  N  H  R  I  V  P  V  S  W :   L  W  D  L  R  K  S  K  N  L  *  G  *  *  Y  R  E  L  L  L  L  V  K  E  R  N  A  S  S  L  P  R  S :   T  I  W  C  I  L  L  L  E  I  Y  *  G  L  K  L  L  Q  A  L  K  M  G  G  E  Q  R  S  I  W  I  K  D  N  W  Y  Q  T  R  *  L  *  R :   W  S  K  S  G  *  C  V  Q  T  L  K  K  R  V  G  F  *  M  D  I  L  G  A  C  L  K  Q  *  L  S  K  S  S  S  Q  T  F  S  F  F  W  K :   Y  L  K  R  Y  L  L  R  E  W  L  A  V  D  *  I  L  *  L  G  E  Y  T  I  *  S  I  L  R  Q  R  P  M  K  S  L  Q  G  L  P  S  A  L  M  I  Q  K  K  R :   *  S  C  V  C  T  L  T  V  K  M  W  N  Q  F  S  Q  C  T  K  I  L  Y  S  R  Y  S  F  C  H  R  C  G  A  V  A  S  L  G  N  A  D  *  N  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113041" stop="112811"/>
                    <exon start="112495" stop="112397"/>
                    <exon start="111310" stop="111182"/>
                    <exon start="111065" stop="110937"/>
                    <exon start="110335" stop="110189"/>
                    <exon start="109798" stop="109661"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLYLARSRSAMASCCSLSFSTVSSKPNKPYSSPISSSLELPFTSQLPFSKKYSLYSNHTLLQTQCRKTQSPDCPSFLVVGSAKKQEPLRVMISGAPASGKGTQCELITKKYDLVHIAAGDLLRAEIAAGTENGRRAKEYMDKGQLVPNEIVVTMVKERLMCPDSQEKGWLLDGYPRSLSQAVALKEFQPNLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPPETDEIAARLTQRFDDTEEKVKLRLHTHRQNVESVLSMYKDTIFQVFFLPQMWCSCFTRECRLKHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="112497" e_stop="112397"/>
            <exon e_start="111310" e_stop="111182"/>
            <exon e_start="111065" e_stop="110937"/>
            <exon e_start="110335" e_stop="110189"/>
            <exon e_start="109798" e_stop="109724"/>
            <exon e_start="109111" e_stop="108608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.990"/>
          <exon-intron don_prob="0.475" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="112497" e_stop="112397" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111310" e_stop="111182" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.475" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111065" e_stop="110937" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.997">
            <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110335" e_stop="110189" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109798" e_stop="109724" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.931">
            <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="109111" e_stop="108608" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112497" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112448" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111217" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111003" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110987" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110299" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110233" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110229" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109785" stop="109724"/>
              <exon start="109111" stop="108835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109780" stop="109724"/>
              <exon start="109111" stop="108608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109101" stop="108634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109097" stop="108634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109075" stop="108691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG : TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG : ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA : GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG : GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG : GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAGCAGAAAAAAA</gDNA_template>
            <first_frame> R  L  W  D  L  R  K  S  K  N  L  *  G  *  *  Y  R  E  L  L  L  L  V  K  E  R  N  A  S  S  L  P  R  S :   T  I  W  C  I  L  L  L  E  I  Y  *  G  L  K  L  L  Q  A  L  K  M  G  G  E  Q  R  S  I  W  I  K  D  N  W  Y  Q  T  R  *  L  *  R :   W  S  K  S  G  *  C  V  Q  T  L  K  K  R  V  G  F  *  M  D  I  L  G  A  C  L  K  Q  *  L  S  K  S  S  S  Q  T  F  S  F  F  W  K :   Y  L  K  R  Y  L  L  R  E  W  L  A  V  D  *  I  L  *  L  G  E  Y  T  I  *  S  I  L  R  Q  R  P  M  K  S  L  Q  G  L  P  S  A  L  M  I  Q  K  K  R :   *  S  C  V  C  T  L  T  V  K  M  W  N  Q  F  S  Q  C  T  K  I  L  Y  S  R :   W  T  G  A  F  P  K  R  K  Y  L  L  K  L  M  V  H  *  L  N  F  L  K  Q  R  S  E  D  L  E  P  *  C  H  R  D  Q  E  K  S  A  E  C  T  M  *  Y  S  G  G  S  S  K  T  K  E  *  H  C  W  L  L  S  L  L  Y  K  C  M  K  C  L  C  I  S  Y  L  L  P  T  I  Y  V  D  I  H  *  I  R  F  K  V  Y  Y  K  T  C  F  V  V  R  P  S  S  L  V  I  L  L  A  S  S  L  H  L  S  G  F  K  T  S  L  G  C  K  T  C  L  F  M  Y  S  T  Y  L  M  Y  F  C  L  F  G  T  L  N  H  G  H  K  Y  P  D  F  *  L  I  Q  L  L  K  F  P  I  T  A  E  K   </first_frame>
            <second_frame>  G  C  G  I  C  E  K  A  R  T  F  E  G  N  D  I  G  S  S  C  F  W  *  R  N  A  M  R  A  H  Y  Q  E   : V  R  F  G  A  Y  C  C  W  R  F  I  E  G  *  N  C  C  R  H  *  K  W  E  E  S  K  G  V  Y  G  *  R  T  I  G  T  K  R  D  S  C  N   : D  G  Q  R  A  V  D  V  S  R  L  S  R  K  G  L  A  F  R  W  I  S  S  E  L  V  S  S  S  S  S  Q  R  V  P  A  K  P  F  H  S  S  G   : S  T  *  R  D  T  C  *  E  S  G  W  P  *  T  R  S  C  N  W  E  N  I  P  F  E  V  F  S  A  R  D  R  *  N  R  C  K  A  Y  P  A  L  *  *  Y  R  R  K   : G  E  A  A  S  A  H  S  P  S  K  C  G  I  S  S  L  N  V  Q  R  Y  Y  I  P   : G  G  R  E  R  F  Q  R  G  S  I  C  S  N  *  W  C  I  N  S  T  S  *  S  K  G  V  K  I  W  N  R  N  V  I  E  I  R  K  N  L  Q  N  V  P  C  N  T  Q  E  D  H  R  R  Q  K  S  N  I  V  G  C  Y  P  S  Y  T  N  V  *  N  V  Y  V  Y  R  I  C  F  Q  L  S  M  W  I  F  I  E  S  D  S  K  F  T  T  K  L  V  L  L  *  G  P  A  R  *  *  Y  C  *  L  R  V  Y  T  Y  P  A  L  R  R  H  *  G  V  R  P  A  Y  L  C  T  Q  H  I  S  C  I  F  A  Y  L  G  L  L  I  M  D  I  N  T  Q  I  S  D  *  S  N  F  *  S  F  Q  S  Q  Q  K  K  </second_frame>
            <third_frame>   V  V  G  S  A  K  K  Q  E  P  L  R  V  M  I  S  G  A  P  A  S  G  K  G  T  Q  C  E  L  I  T  K  K  :  Y  D  L  V  H  I  A  A  G  D  L  L  R  A  E  I  A  A  G  T  E  N  G  R  R  A  K  E  Y  M  D  K  G  Q  L  V  P  N  E  I  V  V  T  :  M  V  K  E  R  L  M  C  P  D  S  Q  E  K  G  W  L  L  D  G  Y  P  R  S  L  S  Q  A  V  A  L  K  E  F  Q  P  N  L  F  I  L  L  E  :  V  P  E  E  I  L  V  E  R  V  V  G  R  R  L  D  P  V  T  G  R  I  Y  H  L  K  Y  S  P  P  E  T  D  E  I  A  A  R  L  T  Q  R  F  D  D  T  E  E  K  :  V  K  L  R  L  H  T  H  R  Q  N  V  E  S  V  L  S  M  Y  K  D  T  I  F  Q  :  V  D  G  S  V  S  K  E  E  V  F  A  Q  I  D  G  A  L  T  Q  L  L  E  A  K  E  *  R  F  G  T  V  M  S  *  R  S  G  K  I  C  R  M  Y  H  V  I  L  R  R  I  I  E  D  K  R  V  T  L  L  V  A  I  P  L  I  Q  M  Y  E  M  F  M  Y  I  V  F  A  S  N  Y  L  C  G  Y  S  L  N  Q  I  Q  S  L  L  Q  N  L  F  C  C  K  A  Q  L  A  S  D  I  V  S  F  E  F  T  P  I  R  L  *  D  V  I  R  V  *  D  L  L  I  Y  V  L  N  I  S  H  V  F  L  P  I  W  D  S  *  S  W  T  *  I  P  R  F  L  I  N  P  T  S  E  V  S  N  H  S  R  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112495" stop="112397"/>
                    <exon start="111310" stop="111182"/>
                    <exon start="111065" stop="110937"/>
                    <exon start="110335" stop="110189"/>
                    <exon start="109798" stop="109724"/>
                    <exon start="109111" stop="109031"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVGSAKKQEPLRVMISGAPASGKGTQCELITKKYDLVHIAAGDLLRAEIAAGTENGRRAKEYMDKGQLVPNEIVVTMVKERLMCPDSQEKGWLLDGYPRSLSQAVALKEFQPNLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPPETDEIAARLTQRFDDTEEKVKLRLHTHRQNVESVLSMYKDTIFQVDGSVSKEEVFAQIDGALTQLLEAKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109006" stop="108755"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSGKICRMYHVILRRIIEDKRVTLLVAIPLIQMYEMFMYIVFASNYLCGYSLNQIQSLLQNLFCCKAQLASDIVSFEFTPIRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="121028" PGL_stop="121409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121028" e_stop="121409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121028" e_stop="121409" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121028" stop="121409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121029" stop="121409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121029" stop="121409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</gDNA_template>
            <first_frame> H  K  E  K  P  F  D  E  D  D  S  D  D  D  D  A  D  D  K  E  N  D  P  S  K  S  H  H  H  G  D  H  C  C  S  K  Q  D  H  G  G  E  A  S  T  S  F  S  E  D  H  *  C  I  *  L  V  S  L  L  N  F  L  L  R  R  K  K  M  L  F  L  G  *  I  C  *  L  V  L  F  E  I  F  C  C  W  E  S  D  *  N  L  C  F  D  D  M  K  L  N  N  *  Y  *  C  Y  F  L  Y  Y  S  A  C  K  K  K  I  S  F  L  K  *  I  *  V  F  </first_frame>
            <second_frame>  T  K  K  S  L  L  M  K  T  I  A  M  M  M  M  P  M  T  K  K  M  T  H  Q  R  V  I  I  M  G  I  I  A  V  L  N  R  I  M  E  E  K  L  V  R  V  F  R  K  I  T  D  V  F  D  L  *  V  C  *  T  F  C  *  E  G  K  K  C  Y  F  W  G  K  F  V  N  W  Y  Y  L  R  S  S  V  V  G  N  L  I  E  I  Y  V  S  M  T  *  S  *  T  I  D  I  S  V  T  S  Y  T  I  L  L  V  R  K  K  F  H  F  *  S  E  F  E  Y  L </second_frame>
            <third_frame>   Q  R  K  A  F  *  *  R  R  *  R  *  *  *  C  R  *  Q  R  K  *  P  I  K  E  S  S  S  W  G  S  L  L  F  *  T  G  S  W  R  R  S  *  Y  E  F  F  G  R  S  L  M  Y  L  T  C  K  F  V  E  L  F  V  K  K  E  K  N  V  I  F  G  V  N  L  L  I  G  I  I  *  D  L  L  L  L  G  I  *  L  K  F  M  F  R  *  H  E  V  E  Q  L  I  L  V  L  L  L  I  L  F  C  L  *  E  K  N  F  I  F  E  V  N  L  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0286N17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 226 chains have been computed
$ 
$ memory statistics:
$ 857832 bytes spliced alignments in total
$ 131 spliced alignments have been stored
$ 6548 bytes was the average size of a spliced alignment
$ 27104 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1806 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 301 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:58:24
-->
