<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 06:06:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323643" ref_strand="+" ref_description="SGN-U323643        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | myb family transcription factor (MYB4), contains Pfam profile: PF00249 myb-like DNA-binding domain | chr4:18053545-18054993 FORWARD | Aliases: T9A14.11(evalue: 1e-72, score=270) genbank/nr: gi|23476279|gb|AAN28270.1| myb-like transcription factor 1 [Gossypium hirsutum](evalue: 2e-75, score=285)">
      <seq>ttctcttttagtaccaaaaactcaaatccttgaatactcaaaggacaaaaataaaaaaaattcaaagtatgggacgttcaccttgttgtgaaaaagcacatacaaataaaggagcatggactaaagaagaagaccaacgcctcatcaattatatacgtgctcatggggaaggttgctggcgttctcttcctaaagctgcaggattgtcaagatgtggaaagagttgcagattgagatggataaattatttaaggcctgatctcaaaagagggaattttacagaagaagaagatgaattgataatcaaacttcatagtttgcttggaaacaaatggtcagttatagccggaagattacctggaagaacggataacgaaatcaagaactattggaatacacatattaaacgaaaactcattagtcgtggcattgatcctcaaactcaccgtccactcaacaacaacgccactaactcccacaccaccaccaatatcaccaccgcagtcacaaccaaaaacatcaacttggatttcacaaacgttgaccaaaaacaacccaatattatgattgccacgtcatcgtcatatgatgaaacaaaatgcaacagtggtacaactgaggaaacaaagccactagaaattattattccaaaaataccctcacaagttatgattaatcttgaactttcaattgggttgccgttacatactgatcatatttcttcaccagagtcaacggcctcatacaacttcttgaccaccgtagcaccgccgccaactgcggcggtaccggcggcggagatgatggcgaagactgtttgtttgtgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10034" stop="12251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10334" g_stop="10534" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10535" i_stop="10765" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10766" g_stop="10895" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="331" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10896" i_stop="11451" i_length="556">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11452" g_stop="11949" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="829" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U323643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10334" e_stop="10534"/>
          <exon e_start="10766" e_stop="10895"/>
          <exon e_start="11452" e_stop="11949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAGGTATTCATTGTCGAAAAATTATATTGTATATATATTAAAAAAAATATTTTGAAATATCTCGCTCGTTATACATATATTGAAAAATTAAACTTATTAAATTTAAATTAAGAAATTAAGAGGATCTAATAATTTTTGGATCTACTGCCACAAAAAAAAAAGATTATGGATGTGGATAAAAGATTTTGAGACTTTTTTTTGTAAAATATTGAATTATTTTTAAAAATATTTTAGGATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAAGTATGTATATATGATCTTTGTTATTTTAATTTATTTTTTTGGTTTTACTTATTATAAGTTATATATTCCTAGTATCATAAAATGTGTGAAAATTGGAGTAGAAAGTCAAAATTGTTTTCTTTTTTGTTTGGCTAATTTGGGACCACATTAAGAAGTTATAAAAACAAGATCTAAATTGTTCTAAGAGAAAAAAGTGGTTATAGTAGTAAATTTTTACAAGTGGGAAAGACTTCTCTGTTTCTTGAAATACCAAACCTATAAAATCTATAGATATCCAAAGTCCTTTTCAATTATTAAAACAAAAATTAAATTAAAGCTTGATTTTGAACTAATTTGTGATTGGCAAAAAGGTTGAAAGTTGTTAAATCAGGTCAAAATTCACAAATAGTCATTTTTCAGTTATTGCTATTTCTAGAGTCAATTTTTTTAAAAAAAAAAATGGGTTAAAAGCTTCTTACAAAACAAGTATTTGAAAACTTTAGCTCAAAACAAAATGTAACTTACTTATATTTCCTTTTTTTTATTTTTATATTTTCTAATAATATTTTCATTGCAGATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACGTCATCGTCATATGATGAAACAAAATGCAACAGTGGTACAACTGAGGAAACAAAGCCACTAGAAATTATTATTCCAAAAATACCCTCACAAGTTATGATTAATCTTGAACTTTCAATTGGGTTGCCGTTACATACTGATCATATTTCTTCACCAGAGTCAACGGCCTCATACAACTTCTTGACCACCGTAGCACCGCCGCCAACTGCGGCGGTACCGGCGGCGGAGATGATGGCGAAGACTGTTTGTTTGTGTTG</genome_strand>
        <mrna_strand>TTCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAG.......................................................................................................................................................................................................................................GATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACGTCATCGTCATATGATGAAACAAAATGCAACAGTGGTACAACTGAGGAAACAAAGCCACTAGAAATTATTATTCCAAAAATACCCTCACAAGTTATGATTAATCTTGAACTTTCAATTGGGTTGCCGTTACATACTGATCATATTTCTTCACCAGAGTCAACGGCCTCATACAACTTCTTGACCACCGTAGCACCGCCGCCAACTGCGGCGGTACCGGCGGCGGAGATGATGGCGAAGACTGTTTGTTTGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339313" ref_strand="+" ref_description="SGN-U339313        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: SJCHGC09205(evalue: 2e-05, score=52.4)">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21624" stop="20467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21324" g_stop="20767" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-U339313" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21324" e_stop="20767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACATATTCTCAACAACAACACTTTAACAAATTACATACCCTCAACAACAATACTTCAACAAATTACATATCCGCAATAACAAGCTCAATATTGATCTATCACAAGTTCCACAG-GAGGCAATCAGAAGATCAGCAAAACACGATATCAAGTTCACTAATAATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCACGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCACGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCCCAACCAATGCCTCAGAATAATGTAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</genome_strand>
        <mrna_strand>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328275" ref_strand="+" ref_description="SGN-U328275        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | vacuolar protein sorting 11 family protein / VPS11 family protein, similar to Vacuolar protein sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) (Homo sapiens); similar to Vacuolar biogenesis protein END1 (PEP5 protein) (Vacuolar protein sorting 11) (Swiss-Prot:P12868) (Saccharomyces cerevisiae) | chr2:1869882-1873809 FORWARD | Aliases: F5G3.7, F5G3_7(evalue: 2e-70, score=261) genbank/nr: Cytochrome(evalue: 2e-70, score=267)">
      <seq>aatgatctagcacataaatcttcaaaatcagtatctaatgggagggctatatcgaacaagaaagacgtaaatgatgagaaaggtcgtcaagagcgacgtcggaaggggctgaccttgcttaagagtgcatggccttctgaactagaacaaccactatatgacgttgatcttgtcataattttatgcgagatgaatgactttaaagaaggattgttgtttctgtatgagaagatgaaacttttcaaagaagttattgcatgctacatgcaggtacatgatcatgaaggtttgatttcatgctgcaagagattgggtgatttgggtaaggggggtgacccttctctttgggcagatttgttgaagtattttggtgaacttggagaagactgctcaaaagaagtcaaagaaatcctgacatacattgagaggggtgatatcttgcctcccattgtggttcttcagacacttgctaaaaacccgtgcctctctctctcagttatcaaagattacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38635" stop="39747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38935" g_stop="39447" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U328275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38935" e_stop="39447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</genome_strand>
        <mrna_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323720" ref_strand="+" ref_description="SGN-U323720        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | vacuolar protein sorting 11 family protein / VPS11 family protein, similar to Vacuolar protein sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) (Homo sapiens); similar to Vacuolar biogenesis protein END1 (PEP5 protein) (Vacuolar protein sorting 11) (Swiss-Prot:P12868) (Saccharomyces cerevisiae) | chr2:1869882-1873809 FORWARD | Aliases: F5G3.7, F5G3_7(evalue: 6e-52, score=200) genbank/nr: gi|18395981|ref|NP_027676.1| expressed protein [Arabidopsis thaliana] gi|25411150|pir||F84465 hypothetical protein At2g05170 [imported] - Arabidopsis thaliana gi|4755188|gb|AAD29055.1| expressed protein [Arabidopsis thaliana] gi|16930681|gb|AAL32006.1| At2g05170/F5G3.7 [Arabidopsis thaliana] gi|27363390|gb|AAO11614.1| At2g05170/F5G3.7 [Arabidopsis thaliana](evalue: 4e-50, score=200)">
      <seq>aagaatcatcaataatgagaaaagagatccaggatctaagaacaaatgctagaatatttcagcttagcaagtgtactacttgcacattcaccctagaccttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaataaaattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttaacaacatattattagtgtacttaataattaataatgcatcagcagctaattatttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41187" stop="42514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41487" g_stop="42222" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U323720" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41487" e_stop="42222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTATAGGGAAATT</genome_strand>
        <mrna_strand>AAGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317168" ref_strand="+" ref_description="SGN-U317168        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:27112954-27114093 REVERSE | Aliases: F28P5.9, F28P5_9(evalue: 2e-24, score=108) genbank/nr: gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa (japonica cultivar-group)] (evalue: 3e-24, score=114)">
      <seq>cgaaactactccgagcgtccatagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaacatgagaatgatttaatatccattttctgactggcaattactcctatcaattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42229" stop="72373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42529" g_stop="42635" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45424" g_stop="45908" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="592" r_length="485" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45909" i_stop="46860" i_length="952">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46861" g_stop="46893" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="625" r_length="33" r_score="0.697"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U317168" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42529" e_stop="42635"/>
          <exon e_start="45424" e_stop="45908"/>
          <exon e_start="46861" e_stop="46893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATGGAAGTTACTTTTATATTTTTCTTCATATTTTCAAATTTTTACTTTTAAATCTGTTTCTTCAACTCTAGCGTTCCTTCATAGTCACAATCTTTTTACTGTGAAAATTTGTCTTCTTTTAATATATTTTACACTATATTATAAATAAATATAAAATGTATACTACATTGGGTGTTCTAATAATAATAATAATAATAATATTATTATTATTATTATTATTATTATTATTATTTTTAAAAAAGCATAGAAAATTTGAAGTTTAAATGAGGAACTCTTTATTTACAAGTCTGAAATCAAAACGGCAATAAATTTTTTTAAAAATTTCAAAAAGGCAACTCAACTAATTATGAAATTAACAGGGCATTAATTATAACGGTATCTAAATAAAATTTTCAAAAATGTGGCGCAAAATTTGATGAGCCTTAAAAGGCGCAACAACTTTTAGCCTTGTAAGGCTCAGTTGTCATGAGCCTTACAAGGCTCAGTTGTCAGCGCCTTGCATGTGGTTTTTGTTTTAGAAAAGAAATATCGTTTCATTCTCTTGTTTGTCAATTAGTTATTCTTTTTTTTTCATTTTATTTTCTTGGGTTAAAACTTGGACATTGTAATCTAATTGAGTTATTCTCTGGTACTACTTTCACATAATTTAATGTAGCTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAATTTATCACCTCAA</genome_strand>
        <mrna_strand>CGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGAGAATGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335979" ref_strand="+" ref_description="SGN-U335979        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:27112954-27114093 REVERSE | Aliases: F28P5.9, F28P5_9(evalue: 3e-22, score=102) genbank/nr: gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa (japonica cultivar-group)] (evalue: 4e-24, score=114)">
      <seq>caagcatacttccatcagtttgacaatcttttcattggaacagtgtggcaattgaaacgtgtttttctacggcctgcttgaatgacttcgaattatttattatgccaacttctttctttatgcacaagttcaaacgtctgtcttaaccgttacatttcaaacattctttgatacttgtttagttaattatacatgttttgaaacttccatttctctcatatttcatttctaattgtctttcatcttaccgtttctttatgaaaagtttatttcaatcaaatttggatgctgttgttcatgctttttataagtctgaccttactgataattgatatttattgtttggtcagtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44774" stop="45902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45074" g_stop="45602" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U335979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45074" e_stop="45602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCT</genome_strand>
        <mrna_strand>CAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326311" ref_strand="+" ref_description="SGN-U326311        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | TCP family transcription factor, putative, similar to auxin-induced basic helix-loop-helix transcription factor GI:5731257 from (Gossypium hirsutum) | chr1:21516112-21517592 REVERSE | Aliases: T15M6.11(evalue: 8e-56, score=214) genbank/nr: gi|15217857|ref|NP_176107.1| TCP family transcription factor, putative [Arabidopsis thaliana] gi|25404188|pir||C96614 hypothetical protein T18I24.2 [imported] - Arabidopsis thaliana gi|12321250|gb|AAG50694.1| auxin-induced basic helix-loop-helix transcription factor, putative [Arabidopsis thaliana] gi|12321381|gb|AAG50759.1| auxin-induced basic helix-loop-helix transcription factor, putative [Arabidopsis thaliana] gi|19698995|gb|AAL91233.1| auxin-induced basic helix-loop-helix transcription factor, putative [Arabidopsis thaliana] gi|30725660|gb|AAP37852.1| At1g58100 [Arabidopsis thaliana](evalue: 6e-54, score=214)">
      <seq>ttctgttttggctcattttgcactactacttgctttcatttgagccttttttcttttcctaaaaacttccaattggttaaagttttcaaatatcaaacaaatctttgtttgttgttacgccatggaatttagagagtcaaatagcaaaaacaaccaagatggtgggagtaatagcaataataatagtaatgaaaataatagcaatgtgatttctactaaaattgttaagaagccatcgaaagaccgtcacaccaaggtggatggtcgagggcggcgcattcgaatgccggctttatgcgccgccagggtttttcagctaaccaaagaattgggtcataagtcggatggcgaaaccatagagtggctattgcaacaagctgaaccgtcgattatagctgcgacgggaacaggtacaattccggctaatttctcaactcttaatgtctctttacgcagcagcgggactacaatttcagctccgccgtcgaaatctgcgccgcttttcattcacggcggtgctgccactatgctgggtttccaccaccagattccgggcaacagttttgggcaagacccagatgagaatttcatgaagaagaggtatagagaagatacaactgcagcatcaacttcaccatcgtcatcatcagctaaaccggaaagaaccggagttcaaggtcacgaaccggatcaagaatcgaaacccggttcatcgaatccctctagctacataccgactcccgccatgtgggctgttggtccggcggccggtaacgtcggaaacacgttctggatgctaccaggtacctcatcaaccatgcagagaattggtggtttcgagttaccgggaggtggccggttcagtccggttcaactaggatcaatgtttttgcagcagccacagccggttcagcagctggggttgggtgtgacagagacaaatatgggaatgttggcatcgatgaatgcatataacagtagtagtagtaggggtagtgggattgatttggggatgaatttggaacaacatcatcatcatcaaaatcagcctcaaggtagtgacagtggtgatgaaaatcacaaagattcccaatcataactccaacattgataccacaaaaggatgtgtgggactgtttttgtcaaatctcgagtttgagtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52167" stop="50403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51867" g_stop="50703" g_length="1165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1165" r_length="1165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-U326311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51867" e_stop="50703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTTTGGCTCATTTTGCACTACTACTTGCTTTCATTTGAGCCTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTTTTGTCAAATCTCGAGTTTGAGTCATG</genome_strand>
        <mrna_strand>TTCTGTTTTGGCTCATTTTGCACTACTACTTGCTTTCATTTGAGCCTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTTTTGTCAAATCTCGAGTTTGAGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323234" ref_strand="+" ref_description="SGN-U323234        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profile PF04853: Plant neutral invertase | chr1:8013371-8015968 REVERSE | Aliases: T22J18.18, T22J18_18(evalue: 3e-166, score=580) genbank/nr: neutral/alkaline(evalue: 7e-166, score=585)">
      <seq>acatttccaactctgctatgtgctgatggatgctcaatgattgataggaggatgggtgtttatggatatcctattgagatccaagctctcttcttcatggcactgagatctgcattggccatgttgaagcacgatacagaagggaaagaattcattgagagaatagtgaagcgcctgcatgccttgagttatcatatgcgaagttatttttggctcgactttcaacagttaaatgacatatatcgctataaaactgaagagtattctcacacagcagtaaataagtttaatgttattcctgattcaatcccagagtgggtatttgattttgtgcctacacgtggaggttactttattggaaacgttagtcctgcaaggatggacttcaggtggtttgctttgggtaactgtattgcaatcttgtcttcccttgccactccagaacaagcttctgctattatggatctcatagaatcccgctgggaggagctagtagcagatatgcctttgaagatatgctatccagcaattgaaaatcacgaatggcggatagtaactggttgtgatcccaagaatattagatggagttaccataatggaggatcttggccagtgcttttgtggttgctaacggctgcctgcattaagactggacggccacaaattgcaagacgagcaattgatcttgctgagagccgcttactcaaggacagctggcctgaatattatgatggaaagctcggcagatacattggtaaacaagcaaggaagcaccagacatggtcaattgctggatatcttgtagcaaagatgttgctggaggatccttcacacttgggaatgatctctttggaggaggacaagcaaatgaagcctgtaatcaagcgatcatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66474" stop="63132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66174" g_stop="66121" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66120" i_stop="64497" i_length="1624">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64496" g_stop="63938" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="613" r_length="559" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63937" i_stop="63715" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63714" g_stop="63432" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="896" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-U323234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66174" e_stop="66121"/>
          <exon e_start="64496" e_stop="63938"/>
          <exon e_start="63714" e_stop="63432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATGGTAATACATTTTGTCATCATACCTTCTCAATATATTTGGATCTCTTCTTATCATTGTGATATAAAGCCTGTTTAGCGTAGATGATTGGAGCAATTTATAAGCAACAAGAGCTGAAGCTGGTTTTATAAATAAGGAGTTAGTTTCTTTCAATTTTTGTGATTAGGATTCATTTAGATGTGTATTCTTATGTTCTTCTATGCATTCTCATCTTATGTTTCATGGTTATACAAAACTTTTTAGTCGGAAAATGAACTTTTGCAATAGATTGTCTAGTGACCTTTAGCTTTGTTTTCTTTGTCCCTGTGACAATGTGACATGAGCTCTAATGCATAGTAAATGGATTTTAGACTCTAGTAGAATTCAGTGAATGTTTTTAGTGTAGATCTCTATTCTAAGTTGAAACTAGCACTTTGTACATCCCTCAGATCAGGCTAAATTTTGTGGGAGATTTGTCAACAAAACGTATAACACAGTAAAATTTTGAATCATTGGCTCCCTAAAAGATTGTTTGCATCATTAGCCTCTTCAAATGATGTTCTGTTAGAGTTCATGTAACCAACCACCTGAGCTATTAATATTCCCCGACAATTGTTGTTCAATTGTTCAGGATATTGATATTTTGGTCCATAACTTATGTTCAAGCGTTGGACATACACTCTTGATGTTTGAATTTAGAGCTTTTAACTAATCTACTAGTTTCTCAGACAAGTAACTTTTGTGAAAATTACAACCCATTCGTCTTTAGCAGTTACTGCTTTTTATTGACTTTGGAATAGTCAATCAGAACGGAATTAATGATAAAGCTGAAAGAAAATAGAGAATCAGAAAGGGAGGAATGAGATGATTTATTCTGTTTCAGTCCTAAAAGGCTGTCACGCAGCTCATATTCTTCTTTGTTGAAGGGGAAACAAACTCCTTGTCTTCCTCTCCCTTTTCTTCAACTTTTTGACTTTTTACATTTTCCTACTTCTTTGTATGGGCATAATGTGCGACCATATGATTTGAGCCAATTAATGGATTTCTTGGAATTGTTAGATAGAACAGTCTAGTAGTCTGTTTTTCTTTCTAAAGCTTTATGTTGTTTACGTAACCTTTTAGTACCTTGTTGGAACCCTTTTAATAAAACTTTTGCCTTATCAGAAAATTAAACATAACGCAGCTTATCTAGTGAAATTTTAGTGTTTTTTTTTTTAAGAATGAGAAACCATAACATGGCCTAATTGAACCGTTTCTGGTTATACCTCATGCGTTGAATTGCTACGTTTCATCATTTCTGAAGCTTCTCTTCCAGCTTAGTTATCCGTGACATACAAATTTCTTTAAAAATTTTAATTTTTCAAGTCAATGAATGTCTAGAGGTGAACCTTTTATTTATGGTACTCTATTGTTTTGTCTGATATCTGACAATGATCGGAAAACTCTAATAGTAAATGGATCTAATCTAAGAGACTGAAATTCTCGCCCTTGTGAGTTTCCTTAATCATTCTTAGAGGACTAGATTTTTATGCTTAAAAGAACAGTAACACAACTTTTTCTTGCCTCCAAAATTTAGGATCCATGATTGATGTTTTTTTCTTGAAAAGACATTAATTGGATACTAATTTTTATTGTGGTTGATTTTCAGGGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAGGTTCGACCATCATCCTTCTGCACTGCATTTTATTTGACTTTGATCATTGTTGGAAGTTATTTATTCAACCCTATACGATGTTATAAGGATTCTTTGCTTTGGAATTTTTTTGTTAGTTTTAGTTCTATTAGTGAAAGAAATGGAATGCTTAGTCTAATTTTGAAGTCAATTGATCTTACGCTTGCTAATGCTACTACACACATGATTCACCTCTTAAACACAGTGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTAAACAAGCAAGGAAGCACCAGACATGGTCAATTGCTGGATATCTTGTAGCAAAGATGTTGCTGGAGGATCCTTCACACTTGGGAATGATCTCTTTGGAGGAGGACAAGCAAATGAAGCCTGTAATCAAGCGATCATCTTC</genome_strand>
        <mrna_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG...............................................................................................................................................................................................................................TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTAAACAAGCAAGGAAGCACCAGACATGGTCAATTGCTGGATATCTTGTAGCAAAGATGTTGCTGGAGGATCCTTCACACTTGGGAATGATCTCTTTGGAGGAGGACAAGCAAATGAAGCCTGTAATCAAGCGATCATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331406" ref_strand="+" ref_description="SGN-U331406        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profile PF04853: Plant neutral invertase | chr1:13122182-13125242 REVERSE | Aliases: F15O4.33(evalue: 7e-59, score=223) genbank/nr: neutral/alkaline(evalue: 3e-62, score=239)">
      <seq>gcgatctcgccggcgctccggccatcattatcgtcggaaaatcttccattcttctcatttctctctctatctaagagtactcaggaggattgaaggtttaaggtgaccatggaagaaactggactgagaaatgtgggctccaactgctccatttctgaaatagatgattatgatctctctaagcttctaaacaagccaaggctaaacatagagaggaagagatcttttgatgagaggtcactcagtgagttgtccattggcctatctagaggtttagatcattatgaaagtgcctcacctggccaatcagtcttggacaccccagtttcatcagcccggaactcttttgagccccatccgatggttgctgaagcatgggatgctctacgccgcactatggttcattttcgtggtcaaccagtcggtacaatagcggcaattgaccatgcctctgaagaagtcctcaactatgatcaggtttttgttcgagattttgtgcctagtgctttggccttcctgatgaatggagagccagatatagtcaagaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69113" stop="66178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68813" g_stop="68739" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68738" i_stop="67237" i_length="1502">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67236" g_stop="66835" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="477" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66834" i_stop="66553" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66552" g_stop="66478" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="552" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-U331406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68813" e_stop="68739"/>
          <exon e_start="67236" e_stop="66835"/>
          <exon e_start="66552" e_stop="66478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATCTCGCCGGCGCTCCGGCCATCATCATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAGGTAGTCTCTCTTTCTCTCTCTTATACATATTTCTCTGCATATTTATCTTCTTCCTCTAAAAGCTTGTATTTTCTGCGTGTGTATTGTTGATTTTGTGCAAAATCAGCTCTAGATCTAATTTGCTTCTCAGAAAGCTCTTTTACTATGTGTTTAATTTATTTACATTATGTTATCTTCTTCATTATATTTGGATCTTAAGTTTGTAATATGCAGCTTGTTCTCTGAATTGGGATATGGAGATTTGATCTTTTGTATGAGCTTCCTTTGTAGAATCCAATGTTTTTGTTCTTTCTAAAATTAACATCATTCTATAGGAAAAGAAATCTGAACAGCTTGATTTATGGTAATAGTGGCAGTTCAATGTGTGTACTTCTTTTCTTTCTGGATAAGGTTATTTTGATTATGGGAATGGAATTACTAGTGACCTGCATTATTGCTTATTGGATACTGTAGTCTTTTTGGATAAGATTGAATAGTGAAATCCTTATTATTCTTACTTTGTTTCTCCCTTTGTATAATGGTTGGGAACTTGGATGATGGCTATTGTTTACCGACTCGCTTTTTGCTTTCAGTTGAGCCATAATGTTACAGAGATTCGTGTTCTGTACAATTTTCGTCCCGGGTTTTGATACTAAGTGATTTTCTGGACTTCCTGACCATCTATTTATGTGTGTGTACATATGTGCACCTAAATATTCCAACTTTATGTACATAAAAGCACCTTTTCCTTTTTATGCGAGATAATATTTGTGGGTTGAGAATTATCAAGTAATATAGATCGATATCAAGTTTGTGTTTTTATATCGGTCTGCAACTTGGATTGTAGTATAAAGGGGCTAATGCTTATGATTTCTAGTTATATGTGATTTTCTGAAGTTCCGTATATGTCTTTTGACATACTTGAGCGAATGTGCACACACATGTATGTATGTTTGCGTCTATGTATCTATTTGTGTGCCCTTAAATTACTTCTGAGTATTGAAAAAGTGGGTCCGGATGAACTGGAATGGATTCATATAGCCGATCTAACTAATTTGCCATTGGGCATAGTTAAGTGATTGATACAAATGCATGCTCACAAACACCAGTATTGTGTGTGTAAAGTTCCTTCTTTCAGTGCGACCCAGAGTGCTAGTGGGTTGACAGGTAGCTAATCCATCCCTTTCAATTTGTTTGTCTTACTTACCTTTTTAATCTGTTTTTTTTTTAAAAAATCCCTTTTTCCGTTTTCCGCAACTCCTTAGTTCTAACTTCCCACACAACATGTTTGAGACCACAAGATTAAAAGTCATTTTTGTACAATCTATATATATCTTTAATTTAAGATTACAAGATTCGAAAGTCTTCTTTACTTTCTTAAACTCAGGGCCTAGTCAATACTAGACAAAACAAATTGAACCGAAGGGTGCATTATTTTCCTAAGAAGAAATAACAATTTTGTATTTCTATATGGAGCTGCAACCTGTATTTTGTTCTTAAAGGTGTTATTGTTTATGATACAGAGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAGGTCAGTAATATGAAATCCAAGTATTACAGAATCTTGGTCCTCTTTATGATTTTGATTTAGTAATTTGCATAATATTGGTATCATATACTATGATCAGGTATGAATTTTTTGAACAAAAATGTGCGTTGATTATTGATGCCATACATATTAATGTTGGGATATTGTCATATTGATGCCGAAACTGGGTTTAGTTTGGAGTGAGGTACAGTGATGTGATAAGGAGTATAATAATATCTGTTTTATCAGATTATTTATCTAGTGAAGATTTCGTTTGGTGTGTAGGTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATAGTCAAGAACTTC</genome_strand>
        <mrna_strand>GCGATCTCGCCGGCGCTCCGGCCATCATTATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAG..........................................................................................................................................................................................................................................................................................GTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATAGTCAAGAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318877" ref_strand="+" ref_description="SGN-U318877        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | GCN5-related N-acetyltransferase (GNAT) family protein, similar to SP:P07347 N-terminal acetyltransferase complex ARD1 subunit (Arrest-defective protein 1) {Saccharomyces cerevisiae}; contains Pfam profile PF00583: acetyltransferase, GNAT family | chr1:756414-758612 FORWARD | Aliases: F10O3.2, F10O3_2(evalue: 1e-84, score=309) genbank/nr: gi|18379062|ref|NP_563677.1| GCN5-related N-acetyltransferase (GNAT) family [Arabidopsis thaliana] gi|21536510|gb|AAM60842.1| unknown [Arabidopsis thaliana](evalue: 1e-82, score=309)">
      <seq>ggccgggtgtatgctattttgggccgtcactgctcacaaaggggcatcggtggtccattaactggttatcgcccttacagattaccagaagagttccgtagagagagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattatgtttaagaaccaagtgctagaatttctggccttgtgtatttgcttgcatgccatatgttcttttaatattttaaattgttaaatttttgtgacttattgaaaaaaaaaaaaaaaaactcgaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80613" stop="84552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80913" g_stop="81122" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81380" g_stop="81470" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="302" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82407" g_stop="82539" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="435" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83608" g_stop="83677" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="505" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83773" g_stop="83833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="566" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83929" g_stop="84252" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="890" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="891" polyA_stop="906"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U318877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80913" e_stop="81122"/>
          <exon e_start="81380" e_stop="81470"/>
          <exon e_start="82407" e_stop="82539"/>
          <exon e_start="83608" e_stop="83677"/>
          <exon e_start="83773" e_stop="83833"/>
          <exon e_start="83929" e_stop="84252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGGTGTATGCTATTTTGGGCCGTCA-TGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</genome_strand>
        <mrna_strand>GGCCGGGTGTATGCTATTTTGGGCCGTCACTGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320159" ref_strand="+" ref_description="SGN-U320159        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | alpha-(1,4)-fucosyltransferase / galactoside 3(4)-L-fucosyltransferase (FUT13) (FucTC), identical to SP:Q9C8W3 Alpha-(1,4)-fucosyltransferase (EC 2.4.1.-) (FT4-M) (Galactoside 3(4)- L-fucosyltransferase) (FucTC) (AtFUT13) {Arabidopsis thaliana}; identical to cDNA alpha1,3-fucosyltransferase homologue (FucTC) GI:13992485 | chr1:27103946-27105924 FORWARD | Aliases: F17M19.14, F17M19_14(evalue: 2e-168, score=588) genbank/nr: gi|18477220|emb|CAC85740.1| alpha-1,4-fucosyltransferase [Lycopersicon esculentum](evalue: 0, score=822)">
      <seq>atctaaacagtatgcttatattagtcttccatgacaatattaggtcgaacaatcaaacaattttactaatctaaccaccggtagatgaaaactgccccttcaagactaccaattatcaatttcagatcgattattttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcagaagacgatgtccagtcaacctatgcgggcgcactttttcataacaatcggaattatcacctttctccttataagaacaatgatactcttgtttactggtcttcatcacgttgtcttcctcaaaggaaccagcttgccaaacgtctactcagcttgctaccctcccattcatttggcaagtgcctgaacaatgttggaggtctagacaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattgcgcaatgtcacattacaagtttgtccttgcgattgagaacaccaagacagaaagttatgtaacagagaagttattttacgcactggactctggtgcagtccccatttattttggtgccccgaatgtctgggactttgtacctccacattcaataattgatggaagcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84497" stop="89130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84797" g_stop="85525" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87797" g_stop="87970" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="903" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87971" i_stop="88095" i_length="125">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88096" g_stop="88829" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="1637" r_length="734" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1638" polyA_stop="1683"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U320159" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1637</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84797" e_stop="85525"/>
          <exon e_start="87797" e_stop="87970"/>
          <exon e_start="88096" e_stop="88829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</genome_strand>
        <mrna_strand>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT.............................................................................................................................GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340777" ref_strand="-" ref_description="SGN-U340777        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Zinc(evalue: 1e-24, score=116)">
      <seq>aaacctattcacaaatgatatatccaattcctgataggagcttgtggaatgaggctggggagggtacagacggtgggggagcaaatgttgatattataatttgaccaccaaaaacccgacgtcctcctggcaggcccaaaaagaaggttcttcgcatagagagtttcaagcgtccaaagagagtcgttcaatgtggtcgatgccatatgttgggacattttcagaaaaaatgctcgttgcctagttaaatccttggttagttgccagctttctttgctcatgccgaaaactttcattaaagagtctcaagctgtatgtattttagtaatggcttagtcatgagattgttacttggcctttgccttatcagttttgcagttgtctttgaatatatcaggaacatattgtgtaccttgtacttcataatactatatggctaattgagttcccatcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90126" stop="89071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89826" g_stop="89372" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="488"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-U340777" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340777" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89826" e_stop="89372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTATTCACAAATGATATATCCAATTCCTGATAGGAGCTTGTGGAATGAGGCTGGGGAGGGTACAGACGGTGGGGGAGCAAATGTTGATATTATAATTCGACCACCAAAAACCCGACGTCCTCCTGGCAGGCCCAAAAAGAAGGTTCTTCGCATAGAGAGTTTCAAGCGTCCAAAGAGAGTCGTTCAATGTGGTCGATGCCATATGTTGGGACATTCTCAGAAAAAATGCTCGTTGCCTAGTTAAATCCTTGGTTAGTTGCCAGCTTTCTTTGCTCATGCCGAAAACTTTCATTAAAGAGTCTCAAGCTGTATGTATTTTAGTAATGGCTTAGTCATGAGATTGTTACTTGGCCTCTGCCTTATCAGTTCTGCAGTTGTCTTTGAATATATCAGGAACATATTGTGTACCTTGTACTTCATAATACTATATGGCTAATTGAGTTCCCATCGA</genome_strand>
        <mrna_strand>AAACCTATTCACAAATGATATATCCAATTCCTGATAGGAGCTTGTGGAATGAGGCTGGGGAGGGTACAGACGGTGGGGGAGCAAATGTTGATATTATAATTTGACCACCAAAAACCCGACGTCCTCCTGGCAGGCCCAAAAAGAAGGTTCTTCGCATAGAGAGTTTCAAGCGTCCAAAGAGAGTCGTTCAATGTGGTCGATGCCATATGTTGGGACATTTTCAGAAAAAATGCTCGTTGCCTAGTTAAATCCTTGGTTAGTTGCCAGCTTTCTTTGCTCATGCCGAAAACTTTCATTAAAGAGTCTCAAGCTGTATGTATTTTAGTAATGGCTTAGTCATGAGATTGTTACTTGGCCTTTGCCTTATCAGTTTTGCAGTTGTCTTTGAATATATCAGGAACATATTGTGTACCTTGTACTTCATAATACTATATGGCTAATTGAGTTCCCATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326388" ref_strand="+" ref_description="SGN-U326388        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G72180.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to GI:3641252 from (Malus x domestica) (Plant Mol. Biol. 40 (6), 945-957 (1999)) | chr1:27166482-27171092 FORWARD | Aliases: T9N14.3, T9N14_3 (evalue: 1e-105, score=379) genbank/nr: putative(evalue: 9e-104, score=379)">
      <seq>gcaagctgaaaaaattatggaaaattgagctgtttcagaataagttgacaggggaacttcctgtagaactggcagagctctctcttttgcaggaatttgatatctctagcaaccatatgtatgggaagctgcctccagaaattgggaacctgaagaagttaacagtttttcatgtattcatgaataacttctctggtgaaattcctcctggttttggagatatgcagcatcttaatggcttttccgtgtacaggaacaatttttctggggcatttccagcaaatcttggtcggttttcgcccctgaatagcatagacatatctgaaaacaagtttactggtggattcccaaagtacttgtgccaaaatgggaacctgcagtttttgctagctattgagaacagtttctcaggggagtttccgagtacttactcgtcgtgcaagcctttacagagattgagggtcagtaagaatcaactttctgggaaaattcccagtgatgtatggggacttccaaatgtactgatggtggatttcagtgataacgaattcagtggaactatgtccccggaaattggggctgctactagcctgaatcagttggtattatcaaataacagattttcaggtgagcttccaaaagaacttgggaaactcacacagttggaaaggctttacttggataacaataacttctcgggtgcaataccttctgaacttggaaaactaaagcaaatttcatctttgcatttggagaaaaactcattctccgggactatcccatcagaattgggtgaattttctaggcttgcagacctgaatcttgcttcaaatcttcttacaggtagcattcccaattccttatcaataatgacctctttgaactctctgaatctttcacacaacagactcactggtacaataccaactagcttggacaatctgaagctgtcttcattggatctctctaacaaccagctatcaggagaagtatcattagatcttttaacgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105826" stop="107438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106126" g_stop="107138" g_length="1013"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1013" r_length="1013" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U326388" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1013</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106126" e_stop="107138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCTGAAAAAATTATGGAAAATTGAGCTGTTTCAGAATAAGTTGACAGGGGAACTTCCTGTAGAACTGGCAGAGCTCTCTCTTTTGCAGGAATTTGATATCTCTAGCAACCATATGTATGGGAAGCTGCCTCCAGAAATTGGGAACCTGAAGAAGTTAACAGTTTTTCATGTATTCATGAATAACTTCTCTGGTGAAATTCCTCCTGGTTTTGGAGATATGCAGCATCTTAATGGCTTTTCCGTGTACAGGAACAATTTTTCTGGGGCATTTCCAGCAAATCTTGGTCGGTTTTCGCCCCTGAATAGCATAGACATATCTGAAAACAAGTTTACTGGTGGATTCCCAAAGTACTTGTGCCAAAATGGGAACCTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCGAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTTCACACAACAGACTCACTGGTACAATACCAACTAGCTTGGACAATCTGAAGCTGTCTTCATTGGATCTCTCTAACAACCAGCTATCAGGAGAGGTATCATTAGATCTTTTAACGCTG</genome_strand>
        <mrna_strand>GCAAGCTGAAAAAATTATGGAAAATTGAGCTGTTTCAGAATAAGTTGACAGGGGAACTTCCTGTAGAACTGGCAGAGCTCTCTCTTTTGCAGGAATTTGATATCTCTAGCAACCATATGTATGGGAAGCTGCCTCCAGAAATTGGGAACCTGAAGAAGTTAACAGTTTTTCATGTATTCATGAATAACTTCTCTGGTGAAATTCCTCCTGGTTTTGGAGATATGCAGCATCTTAATGGCTTTTCCGTGTACAGGAACAATTTTTCTGGGGCATTTCCAGCAAATCTTGGTCGGTTTTCGCCCCTGAATAGCATAGACATATCTGAAAACAAGTTTACTGGTGGATTCCCAAAGTACTTGTGCCAAAATGGGAACCTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCGAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTTCACACAACAGACTCACTGGTACAATACCAACTAGCTTGGACAATCTGAAGCTGTCTTCATTGGATCTCTCTAACAACCAGCTATCAGGAGAAGTATCATTAGATCTTTTAACGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315044" ref_strand="+" ref_description="SGN-U315044        Tomato 200607 #1 [47 ESTs aligned] arabidopsis/peptide: | Symbol: None | adenylate kinase, chloroplast, putative / ATP-AMP transphosphorylase, putative, similar to SP:P43188 Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP transphosphorylase) {Zea mays}; contains Pfam profile PF00406: Adenylate kinase | chr5:19392668-19395565 FORWARD | Aliases: MCA23.18, MCA23_18(evalue: 2e-81, score=299) genbank/nr: gi|15238822|ref|NP_199595.1| expressed protein [Arabidopsis thaliana] gi|29427999|sp|Q9FIJ7|KADD_ARATH Probable adenylate kinase 2, chloroplast precursor (ATP-AMP transphosphorylase) gi|10177920|dbj|BAB11331.1| contains similarity to adenylate kinase~gene_id:MCA23.18 [Arabidopsis thaliana] gi|15146328|gb|AAK83647.1| AT5g47840/MCA23_18 [Arabidopsis thaliana] gi|24111333|gb|AAN46790.1| At5g47840/MCA23_18 [Arabidopsis thaliana](evalue: 2e-79, score=299)">
      <seq>ggtaaaagaaaaaaagaaaaacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcccagctcgctagtgatattgttagcttcgagtttacacctatccggctttaagatcgtcattagggtgtaagacctgcttatttatgtactcaacatatctcatgtatttttgcctatttgggactcttaatcatggacataaatacccagatttctgattaatccaacttctgaagtttccaatcacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="-" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113367" stop="108308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113068" g_stop="112811" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112495" g_stop="112397" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="357" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111310" g_stop="111182" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="486" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111065" g_stop="110937" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="615" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110335" g_stop="110189" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="762" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109798" g_stop="109724" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="837" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109111" g_stop="108608" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="1342" r_length="505" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="-" ref_id="SGN-U315044" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1341</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113068" e_stop="112811"/>
          <exon e_start="112495" e_stop="112397"/>
          <exon e_start="111310" e_stop="111182"/>
          <exon e_start="111065" e_stop="110937"/>
          <exon e_start="110335" e_stop="110189"/>
          <exon e_start="109798" e_stop="109724"/>
          <exon e_start="109111" e_stop="108608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGA-CGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAGCAGAAAAAAA</genome_strand>
        <mrna_strand>GGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGATCGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334942" ref_strand="+" ref_description="SGN-U334942        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: LacOPZ-alpha(evalue: 6e-21, score=104)">
      <seq>tttttttttttttaatcagaaatctgggtatttatgtccatccattaaagtcccaaataggcaaaaatacatgagatatgttcccttcataaataagcaggtcttacaccctaatgacgcatcttaaagccgcataggtgtaagctcaaagctaacaatatcactagcgagttaggccttacaacaaaacaagttttgtagtaaactttgaatctgattcaatgaatatccacataaatagttggaagcaaatacgatatacataaacatttcatacatttgtataagagggatagcaaccaacaatgtgactcttgtcttcgatgatcctcctcagtattacatggtacattctgcagatttttcctgctctctatgacattacggatccaaatcttcaatcctttgcttcaagaagttgagttaatgcaccatcaatttgagcaaatacctcctctttagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108345" stop="109397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108637" g_stop="109097" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="464" r_length="461" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U334942" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108637" e_stop="109097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGATTAATCAGAAATCTGGGTATTTATGTCCATGATTAAGAGTCCCAAATAGGCAAAAATACATGAGATATGTTGAGTACATAAATAAGCAGGTCTTACACCCTAATGACG--TCTTAAAGCCGGATAGGTGTAAACTCGAAGCTAACAATATCACTAGCGAGCTGGGCCTTACAACAAAACAAGTTTTGTAGTAAACTTTGAATCTGATTCAATGAATATCCACATAGATAGTTGGAAGCAAATACGATATACATAAACATTTCATACATTTGTATAAGAGGGATAGCAACCAACAATGTTACTCTTTTGTCTTCGATGATCCTCCTGAGTATTACATGGTACATTCTGCAGATTTTTCCTGATCTCTATGACATTACGGTTCCAAATCTTCACTCCTTTGCTTCAAGAAGTTGAGTTAATGCACCATCAATTTGAGCAAATACTTCCTCTTTGGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTAATCAGAAATCTGGGTATTTATGTCCATCCATTAAAGTCCCAAATAGGCAAAAATACATGAGATATGTTCCCTTCATAAATAAGCAGGTCTTACACCCTAATGACGCATCTTAAAGCCGCATAGGTGTAAGCTCAAAGCTAACAATATCACTAGCGAGTTAGGCCTTACAACAAAACAAGTTTTGTAGTAAACTTTGAATCTGATTCAATGAATATCCACATAAATAGTTGGAAGCAAATACGATATACATAAACATTTCATACATTTGTATAAGAGGGATAGCAACCAACAATGTGACTC--TTGTCTTCGATGATCCTCCTCAGTATTACATGGTACATTCTGCAGATTTTTCCTGCTCTCTATGACATTACGGATCCAAATCTTCAATCCTTTGCTTCAAGAAGTTGAGTTAATGCACCATCAATTTGAGCAAATACCTCCTCTTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329869" ref_strand="+" ref_description="SGN-U329869        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>cacaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcattggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0286N17-IqT4S/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0286N17.1" temp_strand="+" temp_description="C06HBa0286N17.1  AC209513.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0286N17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120728" stop="121722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121028" g_stop="121409" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="403"/>
      <MATCH_line gen_id="C06HBa0286N17.1" gen_strand="+" ref_id="SGN-U329869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0286N17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121028" e_stop="121409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10334" PGL_stop="11949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10334" e_stop="10534"/>
            <exon e_start="10766" e_stop="10895"/>
            <exon e_start="11452" e_stop="11949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10334" e_stop="10534" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10535" i_stop="10765" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10766" e_stop="10895" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10896" i_stop="11451" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11452" e_stop="11949" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10334" stop="10534"/>
              <exon start="10766" stop="10895"/>
              <exon start="11452" stop="11949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTTTTAGTACCAAAAACTCAAATCCTTGAATACTCAAAGGACAAAAATAAAAAAAATTCAAAGTATGGGACGTTCACCTTGTTGTGAAAAAGCACATACAAATAAAGGAGCATGGACTAAAGAAGAAGACCAACGCCTCATCAATTATATACGTGCTCATGGGGAAGGTTGCTGGCGTTCTCTTCCTAAAGCTGCAG : GATTGTCAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATCTCAAAAGAGGGAATTTTACAGAAGAAGAAGATGAATTGATAATCAAACTTCATAGTTTGCTTGGAAACAA : ATGGTCAGTTATAGCCGGAAGATTACCTGGAAGAACGGATAACGAAATCAAGAACTATTGGAATACACATATTAAACGAAAACTCATTAGTCGTGGCATTGATCCTCAAACTCACCGTCCACTCAACAACAACGCCACTAACTCCCACACCACCACCAATATCACCACCGCAGTCACAACCAAAAACATCAACTTGGATTTCACAAACGTTGACCAAAAACAACCCAATATTATGATTGCCACGTCATCGTCATATGATGAAACAAAATGCAACAGTGGTACAACTGAGGAAACAAAGCCACTAGAAATTATTATTCCAAAAATACCCTCACAAGTTATGATTAATCTTGAACTTTCAATTGGGTTGCCGTTACATACTGATCATATTTCTTCACCAGAGTCAACGGCCTCATACAACTTCTTGACCACCGTAGCACCGCCGCCAACTGCGGCGGTACCGGCGGCGGAGATGATGGCGAAGACTGTTTGTTTGTGTTG</gDNA_template>
            <first_frame> F  S  F  S  T  K  N  S  N  P  *  I  L  K  G  Q  K  *  K  K  F  K  V  W  D  V  H  L  V  V  K  K  H  I  Q  I  K  E  H  G  L  K  K  K  T  N  A  S  S  I  I  Y  V  L  M  G  K  V  A  G  V  L  F  L  K  L  Q  :  D  C  Q  D  V  E  R  V  A  D  *  D  G  *  I  I  *  G  L  I  S  K  E  G  I  L  Q  K  K  K  M  N  *  *  S  N  F  I  V  C  L  E  T   : N  G  Q  L  *  P  E  D  Y  L  E  E  R  I  T  K  S  R  T  I  G  I  H  I  L  N  E  N  S  L  V  V  A  L  I  L  K  L  T  V  H  S  T  T  T  P  L  T  P  T  P  P  P  I  S  P  P  Q  S  Q  P  K  T  S  T  W  I  S  Q  T  L  T  K  N  N  P  I  L  *  L  P  R  H  R  H  M  M  K  Q  N  A  T  V  V  Q  L  R  K  Q  S  H  *  K  L  L  F  Q  K  Y  P  H  K  L  *  L  I  L  N  F  Q  L  G  C  R  Y  I  L  I  I  F  L  H  Q  S  Q  R  P  H  T  T  S  *  P  P  *  H  R  R  Q  L  R  R  Y  R  R  R  R  *  W  R  R  L  F  V  C  V  </first_frame>
            <second_frame>  S  L  L  V  P  K  T  Q  I  L  E  Y  S  K  D  K  N  K  K  N  S  K  Y  G  T  F  T  L  L  *  K  S  T  Y  K  *  R  S  M  D  *  R  R  R  P  T  P  H  Q  L  Y  T  C  S  W  G  R  L  L  A  F  S  S  *  S  C  R :   I  V  K  M  W  K  E  L  Q  I  E  M  D  K  L  F  K  A  *  S  Q  K  R  E  F  Y  R  R  R  R  *  I  D  N  Q  T  S  *  F  A  W  K  Q  :  M  V  S  Y  S  R  K  I  T  W  K  N  G  *  R  N  Q  E  L  L  E  Y  T  Y  *  T  K  T  H  *  S  W  H  *  S  S  N  S  P  S  T  Q  Q  Q  R  H  *  L  P  H  H  H  Q  Y  H  H  R  S  H  N  Q  K  H  Q  L  G  F  H  K  R  *  P  K  T  T  Q  Y  Y  D  C  H  V  I  V  I  *  *  N  K  M  Q  Q  W  Y  N  *  G  N  K  A  T  R  N  Y  Y  S  K  N  T  L  T  S  Y  D  *  S  *  T  F  N  W  V  A  V  T  Y  *  S  Y  F  F  T  R  V  N  G  L  I  Q  L  L  D  H  R  S  T  A  A  N  C  G  G  T  G  G  G  D  D  G  E  D  C  L  F  V  L </second_frame>
            <third_frame>   L  F  *  Y  Q  K  L  K  S  L  N  T  Q  R  T  K  I  K  K  I  Q  S  M  G  R  S  P  C  C  E  K  A  H  T  N  K  G  A  W  T  K  E  E  D  Q  R  L  I  N  Y  I  R  A  H  G  E  G  C  W  R  S  L  P  K  A  A   : G  L  S  R  C  G  K  S  C  R  L  R  W  I  N  Y  L  R  P  D  L  K  R  G  N  F  T  E  E  E  D  E  L  I  I  K  L  H  S  L  L  G  N  K :   W  S  V  I  A  G  R  L  P  G  R  T  D  N  E  I  K  N  Y  W  N  T  H  I  K  R  K  L  I  S  R  G  I  D  P  Q  T  H  R  P  L  N  N  N  A  T  N  S  H  T  T  T  N  I  T  T  A  V  T  T  K  N  I  N  L  D  F  T  N  V  D  Q  K  Q  P  N  I  M  I  A  T  S  S  S  Y  D  E  T  K  C  N  S  G  T  T  E  E  T  K  P  L  E  I  I  I  P  K  I  P  S  Q  V  M  I  N  L  E  L  S  I  G  L  P  L  H  T  D  H  I  S  S  P  E  S  T  A  S  Y  N  F  L  T  T  V  A  P  P  P  T  A  A  V  P  A  A  E  M  M  A  K  T  V  C  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10345" stop="10534"/>
                    <exon start="10766" stop="10895"/>
                    <exon start="11452" stop="11947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQKLKSLNTQRTKIKKIQSMGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLSRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSVIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQTHRPLNNNATNSHTTTNITTAVTTKNINLDFTNVDQKQPNIMIATSSSYDETKCNSGTTEETKPLEIIIPKIPSQVMINLELSIGLPLHTDHISSPESTASYNFLTTVAPPPTAAVPAAEMMAKTVCLC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21324" PGL_stop="20767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21324" e_stop="20767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="21324" e_stop="20767" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21324" stop="20767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTACATATTCTCAACAACAACACTTTAACAAATTACATACCCTCAACAACAATACTTCAACAAATTACATATCCGCAATAACAAGCTCAATATTGATCTATCACAAGTTCCACAGGAGGCAATCAGAAGATCAGCAAAACACGATATCAAGTTCACTAATAATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCACGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCACGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCCCAACCAATGCCTCAGAATAATGTAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</gDNA_template>
            <first_frame> Q  I  T  Y  S  Q  Q  Q  H  F  N  K  L  H  T  L  N  N  N  T  S  T  N  Y  I  S  A  I  T  S  S  I  L  I  Y  H  K  F  H  R  R  Q  S  E  D  Q  Q  N  T  I  S  S  S  L  I  I  S  M  C  N  A  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  H  G  A  R  H  D  P  R  *  *  *  P  S  R  H  A  I  R  P  S  K  Y  S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  Q  N  N  V  D  D  K  F  T  H  I  M  R  R  *  P  F  P  *  H  H  T  V  H  N  H  T  N  M  K  L  H  Q  Q  * </first_frame>
            <second_frame>  K  L  H  I  L  N  N  N  T  L  T  N  Y  I  P  S  T  T  I  L  Q  Q  I  T  Y  P  Q  *  Q  A  Q  Y  *  S  I  T  S  S  T  G  G  N  Q  K  I  S  K  T  R  Y  Q  V  H  *  *  *  V  C  A  M  Q  W  N  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  S  V  T  A  H  D  T  T  L  D  N  S  N  H  R  G  T  R  Y  V  P  R  N  I  V  S  I  A  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  F  F  L  N  A  H  N  T  C  P  N  Q  C  L  R  I  M  *  M  T  S  S  H  I  *  *  G  D  D  H  F  H  N  I  T  Q  F  T  T  T  Q  T  *  S  Y  I  N  N   </second_frame>
            <third_frame>   N  Y  I  F  S  T  T  T  L  *  Q  I  T  Y  P  Q  Q  Q  Y  F  N  K  L  H  I  R  N  N  K  L  N  I  D  L  S  Q  V  P  Q  E  A  I  R  R  S  A  K  H  D  I  K  F  T  N  N  K  Y  V  Q  C  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  R  P  S  I  I  V  T  I  A  A  R  D  T  S  L  E  I  *  Y  P  S  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  P  T  N  A  S  E  *  C  R  *  Q  V  H  T  Y  N  E  E  M  T  I  S  I  T  S  H  S  S  Q  P  H  K  H  E  V  T  S  T  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21104" stop="20859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDTHPLSLSPGPMGDISVHASVTAHDTTLDNSNHRGTRYVPRNIVSIAARDTSLEMVHPLKYPFFLNAHNTCPNQCLRIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21324" stop="21100"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITYSQQQHFNKLHTLNNNTSTNYISAITSSILIYHKFHRRQSEDQQNTISSSLIISMCNAMECNVKYNDACLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="38935" PGL_stop="39447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38935" e_stop="39447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38935" e_stop="39447" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38935" stop="39447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</gDNA_template>
            <first_frame> N  D  L  A  H  K  S  S  K  S  V  S  N  G  R  A  I  S  N  K  K  D  V  N  D  E  K  G  R  Q  E  R  R  R  K  G  L  T  L  L  K  S  A  W  P  S  E  L  E  Q  P  L  Y  D  V  D  L  V  I  I  L  C  E  M  N  D  F  K  E  G  L  L  F  L  Y  E  K  M  K  L  F  K  E  V  I  A  C  Y  M  Q  V  H  D  H  E  G  L  I  S  C  C  K  R  L  G  D  L  G  K  G  G  D  P  S  L  W  A  D  L  L  K  Y  F  G  E  L  G  E  D  C  S  K  E  V  K  E  I  L  T  Y  I  E  R  G  D  I  L  P  P  I  V  V  L  Q  T  L  A  K  N  P  C  L  S  L  S  V  I  K  D  Y  I </first_frame>
            <second_frame>  M  I  *  H  I  N  L  Q  N  Q  Y  L  M  G  G  L  Y  R  T  R  K  T  *  M  M  R  K  V  V  K  S  D  V  G  R  G  *  P  C  L  R  V  H  G  L  L  N  *  N  N  H  Y  M  T  L  I  L  S  *  F  Y  A  R  *  M  T  L  K  K  D  C  C  F  C  M  R  R  *  N  F  S  K  K  L  L  H  A  T  C  R  Y  M  I  M  K  V  *  F  H  A  A  R  D  W  V  I  W  V  R  G  V  T  L  L  F  G  Q  I  C  *  S  I  L  V  N  L  E  K  T  A  Q  K  K  S  K  K  S  *  H  T  L  R  G  V  I  S  C  L  P  L  W  F  F  R  H  L  L  K  T  R  A  S  L  S  Q  L  S  K  I  T   </second_frame>
            <third_frame>   *  S  S  T  *  I  F  K  I  S  I  *  W  E  G  Y  I  E  Q  E  R  R  K  *  *  E  R  S  S  R  A  T  S  E  G  A  D  L  A  *  E  C  M  A  F  *  T  R  T  T  T  I  *  R  *  S  C  H  N  F  M  R  D  E  *  L  *  R  R  I  V  V  S  V  *  E  D  E  T  F  Q  R  S  Y  C  M  L  H  A  G  T  *  S  *  R  F  D  F  M  L  Q  E  I  G  *  F  G  *  G  G  *  P  F  S  L  G  R  F  V  E  V  F  W  *  T  W  R  R  L  L  K  R  S  Q  R  N  P  D  I  H  *  E  G  *  Y  L  A  S  H  C  G  S  S  D  T  C  *  K  P  V  P  L  S  L  S  Y  Q  R  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38935" stop="39447"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDLAHKSSKSVSNGRAISNKKDVNDEKGRQERRRKGLTLLKSAWPSELEQPLYDVDLVIILCEMNDFKEGLLFLYEKMKLFKEVIACYMQVHDHEGLISCCKRLGDLGKGGDPSLWADLLKYFGELGEDCSKEVKEILTYIERGDILPPIVVLQTLAKNPCLSLSVIKDYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41487" PGL_stop="42222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41487" e_stop="42222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="41487" e_stop="42222" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41487" stop="42222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTATAGGGAAATT</gDNA_template>
            <first_frame> K  N  H  Q  *  *  E  K  R  S  R  I  *  E  Q  M  L  E  Y  F  S  L  A  S  V  L  L  A  H  S  P  *  T  F  L  L  S  T  S  C  V  C  T  H  F  I  S  D  V  L  A  T  M  R  K  S  A  P  S  V  L  P  S  T  E  P  F  W  K  Q  R  E  A  W  N  K  V  P  K  T  Q  T  S  S  S  N  K  S  R  A  Q  R  M  D  F  P  *  L  L  I  I  L  A  R  G  L  S  A  K  P  A  T  G  L  L  K  L  M  D  Q  T  V  L  L  P  A  T  I  S  S  V  L  S  S  Q  F  L  S  T  K  V  V  E  I  S  P  A  I  N  K  V  H  *  A  T  C  S  E  E  C  H  P  S  C  L  V  F  I  R  P  L  V  S  F  K  V  I  V  E  L  Q  F  Y  N  S  L  *  T  K  *  N  Y  V  Q  K  N  N  L  I  D  L  D  K  I  C  T  T  K  C  I  L  L  T  L  I  T  S  G  I  S  W  Y  F  N  N  I  L  L  V  Y  L  I  I  N  N  A  S  A  A  N  Y  L  *  G  N  </first_frame>
            <second_frame>  R  I  I  N  N  E  K  R  D  P  G  S  K  N  K  C  *  N  I  S  A  *  Q  V  Y  Y  L  H  I  H  P  R  P  S  C  C  P  L  H  V  Y  A  L  I  S  S  A  M  S  W  R  Q  *  E  R  V  P  R  V  C  S  R  V  Q  S  R  S  G  N  K  E  K  L  G  T  K  F  Q  K  P  R  P  V  L  P  T  S  Q  E  L  K  G  W  I  F  R  N  C  *  L  F  W  Q  G  D  Y  Q  Q  N  Q  Q  R  A  F  *  S  *  W  I  K  Q  C  F  F  R  Q  R  F  L  A  F  C  H  H  S  F  *  V  L  K  L  L  R  S  L  R  L  *  T  K  F  I  E  L  H  V  Q  K  N  V  I  H  P  V  W  C  L  L  G  H  L  F  L  L  R  L  L  L  S  C  S  S  T  T  L  C  E  Q  N  K  I  M  C  R  R  T  I  *  L  I  W  I  K  S  A  Q  Q  N  V  F  C  *  H  *  L  Q  V  G  L  V  G  I  L  T  T  Y  Y  *  C  T  *  *  L  I  M  H  Q  Q  L  I  I  Y  R  E  I </second_frame>
            <third_frame>   E  S  S  I  M  R  K  E  I  Q  D  L  R  T  N  A  R  I  F  Q  L  S  K  C  T  T  C  T  F  T  L  D  L  P  A  V  H  F  M  C  M  H  S  F  H  Q  R  C  L  G  D  N  E  K  E  C  P  E  C  A  P  E  Y  R  A  V  L  E  T  K  R  S  L  E  Q  S  S  K  N  P  D  Q  F  F  Q  Q  V  K  S  S  K  D  G  F  S  V  I  A  D  Y  F  G  K  G  I  I  S  K  T  S  N  G  P  S  E  A  N  G  S  N  S  A  S  S  G  N  D  F  *  R  F  V  I  T  V  F  E  Y  *  S  C  *  D  L  S  G  Y  K  Q  S  S  L  S  Y  M  F  R  R  M  S  S  I  L  F  G  V  Y  *  A  T  C  F  F  *  G  Y  C  *  A  A  V  L  Q  L  S  V  N  K  I  K  L  C  A  E  E  Q  S  D  *  F  G  *  N  L  H  N  K  M  Y  F  A  D  I  D  Y  K  W  D  *  L  V  F  *  Q  H  I  I  S  V  L  N  N  *  *  C  I  S  S  *  L  F  I  G  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41489" stop="41875"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESSIMRKEIQDLRTNARIFQLSKCTTCTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRAVLETKRSLEQSSKNPDQFFQQVKSSKDGFSVIADYFGKGIISKTSNGPSEANGSNSASSGNDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="42529" PGL_stop="46893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42529" e_stop="42635"/>
            <exon e_start="45424" e_stop="45908"/>
            <exon e_start="46861" e_stop="46893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.697"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42529" e_stop="42635" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42636" i_stop="45423" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="45424" e_stop="45908" e_length="485"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45909" i_stop="46860" i_length="952"/>
          </intron>
          <exon e_serial="3" e_score="0.697">
            <gDNA_exon_boundary e_start="46861" e_stop="46893" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42529" stop="42635"/>
              <exon start="45424" stop="45908"/>
              <exon start="46861" stop="46893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGA : AAAAAAATATAAAACAAAAATTTATCACCTCAA</gDNA_template>
            <first_frame> R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  V  S  D  L  I  S  I  F  *  L  A  I  T  P  I  N  S  K   : K  K  N  I  K  Q  K  F  I  T  S  </first_frame>
            <second_frame>  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  M  C  L  I  *  Y  P  F  S  D  W  Q  L  L  L  S  I  Q  R  :  K  K  I  *  N  K  N  L  S  P  Q </second_frame>
            <third_frame>   K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T  C  V  *  F  N  I  H  F  L  T  G  N  Y  S  Y  Q  F  K  E :   K  K  Y  K  T  K  I  Y  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42530" stop="42635"/>
                    <exon start="45424" stop="45638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45074" e_stop="45602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45074" e_stop="45602" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45074" stop="45602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCT</gDNA_template>
            <first_frame> Q  A  Y  F  H  Q  F  D  N  L  F  I  G  T  V  W  Q  L  K  R  V  F  L  R  P  A  *  M  T  S  N  Y  L  L  C  Q  L  L  S  L  C  T  S  S  N  V  C  L  N  R  Y  I  S  N  I  L  *  Y  L  F  S  *  L  Y  M  F  *  N  F  H  F  S  H  I  S  F  L  I  V  F  H  L  T  V  S  L  *  K  V  Y  F  N  Q  I  W  M  L  L  F  M  L  F  I  S  L  T  L  L  I  I  D  I  Y  C  L  V  S  E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  </first_frame>
            <second_frame>  K  H  T  S  I  S  L  T  I  F  S  L  E  Q  C  G  N  *  N  V  F  F  Y  G  L  L  E  *  L  R  I  I  Y  Y  A  N  F  F  L  Y  A  Q  V  Q  T  S  V  L  T  V  T  F  Q  T  F  F  D  T  C  L  V  N  Y  T  C  F  E  T  S  I  S  L  I  F  H  F  *  L  S  F  I  L  P  F  L  Y  E  K  F  I  S  I  K  F  G  C  C  C  S  C  F  L  *  V  *  P  Y  *  *  L  I  F  I  V  W  S  V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A </second_frame>
            <third_frame>   S  I  L  P  S  V  *  Q  S  F  H  W  N  S  V  A  I  E  T  C  F  S  T  A  C  L  N  D  F  E  L  F  I  M  P  T  S  F  F  M  H  K  F  K  R  L  S  *  P  L  H  F  K  H  S  L  I  L  V  *  L  I  I  H  V  L  K  L  P  F  L  S  Y  F  I  S  N  C  L  S  S  Y  R  F  F  M  K  S  L  F  Q  S  N  L  D  A  V  V  H  A  F  Y  K  S  D  L  T  D  N  *  Y  L  L  F  G  Q  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45402" stop="45602"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFIVWSVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51867" PGL_stop="50703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51867" e_stop="50703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51867" e_stop="50703" e_length="1165"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51867" stop="50703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTTTTGGCTCATTTTGCACTACTACTTGCTTTCATTTGAGCCTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTTTTGTCAAATCTCGAGTTTGAGTCATG</gDNA_template>
            <first_frame> F  C  F  G  S  F  C  T  T  T  C  F  H  L  S  L  F  S  F  P  K  N  F  Q  L  V  K  V  F  K  Y  Q  T  N  L  C  L  L  L  R  H  G  I  *  R  V  K  *  Q  K  Q  P  R  W  W  E  *  *  Q  *  *  *  *  *  K  *  *  Q  C  D  F  Y  *  N  C  *  E  A  I  E  R  P  S  H  Q  G  G  W  S  R  A  A  H  S  N  A  G  F  M  R  R  Q  G  F  S  A  N  Q  R  I  G  S  *  V  G  W  R  N  H  R  V  A  I  A  T  S  *  T  V  D  Y  S  C  D  G  N  R  Y  N  S  G  *  F  L  N  S  *  C  L  F  T  Q  Q  R  D  Y  N  F  S  S  A  V  E  I  C  A  A  F  H  S  R  R  C  C  H  Y  A  G  F  P  P  P  D  S  G  Q  Q  F  W  A  R  P  R  *  E  F  H  E  E  E  V  *  R  R  Y  N  C  S  I  N  F  T  I  V  I  I  S  *  T  G  K  N  R  S  S  R  S  R  T  G  S  R  I  E  T  R  F  I  E  S  L  *  L  H  T  D  S  R  H  V  G  C  W  S  G  G  R  *  R  R  K  H  V  L  D  A  T  R  Y  L  I  N  H  A  E  N  W  W  F  R  V  T  G  R  W  P  V  Q  S  G  S  T  R  I  N  V  F  A  A  A  T  A  G  S  A  A  G  V  G  C  D  R  D  K  Y  G  N  V  G  I  D  E  C  I  *  Q  *  *  *  *  G  *  W  D  *  F  G  D  E  F  G  T  T  S  S  S  S  K  S  A  S  R  *  *  Q  W  *  *  K  S  Q  R  F  P  I  I  T  P  T  L  I  P  Q  K  D  V  W  D  C  F  C  Q  I  S  S  L  S  H  </first_frame>
            <second_frame>  S  V  L  A  H  F  A  L  L  L  A  F  I  *  A  F  F  L  F  L  K  T  S  N  W  L  K  F  S  N  I  K  Q  I  F  V  C  C  Y  A  M  E  F  R  E  S  N  S  K  N  N  Q  D  G  G  S  N  S  N  N  N  S  N  E  N  N  S  N  V  I  S  T  K  I  V  K  K  P  S  K  D  R  H  T  K  V  D  G  R  G  R  R  I  R  M  P  A  L  C  A  A  R  V  F  Q  L  T  K  E  L  G  H  K  S  D  G  E  T  I  E  W  L  L  Q  Q  A  E  P  S  I  I  A  A  T  G  T  G  T  I  P  A  N  F  S  T  L  N  V  S  L  R  S  S  G  T  T  I  S  A  P  P  S  K  S  A  P  L  F  I  H  G  G  A  A  T  M  L  G  F  H  H  Q  I  P  G  N  S  F  G  Q  D  P  D  E  N  F  M  K  K  R  Y  R  E  D  T  T  A  A  S  T  S  P  S  S  S  S  A  K  P  E  R  T  G  V  Q  G  H  E  P  D  Q  E  S  K  P  G  S  S  N  P  S  S  Y  I  P  T  P  A  M  W  A  V  G  P  A  A  G  N  V  G  N  T  F  W  M  L  P  G  T  S  S  T  M  Q  R  I  G  G  F  E  L  P  G  G  G  R  F  S  P  V  Q  L  G  S  M  F  L  Q  Q  P  Q  P  V  Q  Q  L  G  L  G  V  T  E  T  N  M  G  M  L  A  S  M  N  A  Y  N  S  S  S  S  R  G  S  G  I  D  L  G  M  N  L  E  Q  H  H  H  H  Q  N  Q  P  Q  G  S  D  S  G  D  E  N  H  K  D  S  Q  S  *  L  Q  H  *  Y  H  K  R  M  C  G  T  V  F  V  K  S  R  V  *  V  M </second_frame>
            <third_frame>   L  F  W  L  I  L  H  Y  Y  L  L  S  F  E  P  F  F  F  S  *  K  L  P  I  G  *  S  F  Q  I  S  N  K  S  L  F  V  V  T  P  W  N  L  E  S  Q  I  A  K  T  T  K  M  V  G  V  I  A  I  I  I  V  M  K  I  I  A  M  *  F  L  L  K  L  L  R  S  H  R  K  T  V  T  P  R  W  M  V  E  G  G  A  F  E  C  R  L  Y  A  P  P  G  F  F  S  *  P  K  N  W  V  I  S  R  M  A  K  P  *  S  G  Y  C  N  K  L  N  R  R  L  *  L  R  R  E  Q  V  Q  F  R  L  I  S  Q  L  L  M  S  L  Y  A  A  A  G  L  Q  F  Q  L  R  R  R  N  L  R  R  F  S  F  T  A  V  L  P  L  C  W  V  S  T  T  R  F  R  A  T  V  L  G  K  T  Q  M  R  I  S  *  R  R  G  I  E  K  I  Q  L  Q  H  Q  L  H  H  R  H  H  Q  L  N  R  K  E  P  E  F  K  V  T  N  R  I  K  N  R  N  P  V  H  R  I  P  L  A  T  Y  R  L  P  P  C  G  L  L  V  R  R  P  V  T  S  E  T  R  S  G  C  Y  Q  V  P  H  Q  P  C  R  E  L  V  V  S  S  Y  R  E  V  A  G  S  V  R  F  N  *  D  Q  C  F  C  S  S  H  S  R  F  S  S  W  G  W  V  *  Q  R  Q  I  W  E  C  W  H  R  *  M  H  I  T  V  V  V  V  G  V  V  G  L  I  W  G  *  I  W  N  N  I  I  I  I  K  I  S  L  K  V  V  T  V  V  M  K  I  T  K  I  P  N  H  N  S  N  I  D  T  T  K  G  C  V  G  L  F  L  S  N  L  E  F  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51824" stop="50769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFFLFLKTSNWLKFSNIKQIFVCCYAMEFRESNSKNNQDGGSNSNNNSNENNSNVISTKIVKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFSTLNVSLRSSGTTISAPPSKSAPLFIHGGAATMLGFHHQIPGNSFGQDPDENFMKKRYREDTTAASTSPSSSSAKPERTGVQGHEPDQESKPGSSNPSSYIPTPAMWAVGPAAGNVGNTFWMLPGTSSTMQRIGGFELPGGGRFSPVQLGSMFLQQPQPVQQLGLGVTETNMGMLASMNAYNSSSSRGSGIDLGMNLEQHHHHQNQPQGSDSGDENHKDSQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="66174" PGL_stop="63432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66174" e_stop="66121"/>
            <exon e_start="64496" e_stop="63938"/>
            <exon e_start="63714" e_stop="63432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66174" e_stop="66121" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66120" i_stop="64497" i_length="1624"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64496" e_stop="63938" e_length="559"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.843">
            <gDNA_intron_boundary i_start="63937" i_stop="63715" i_length="223"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63714" e_stop="63432" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66174" stop="66121"/>
              <exon start="64496" stop="63938"/>
              <exon start="63714" stop="63432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATG : GGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG : TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTAAACAAGCAAGGAAGCACCAGACATGGTCAATTGCTGGATATCTTGTAGCAAAGATGTTGCTGGAGGATCCTTCACACTTGGGAATGATCTCTTTGGAGGAGGACAAGCAAATGAAGCCTGTAATCAAGCGATCATCTTC</gDNA_template>
            <first_frame> T  F  P  T  L  L  C  A  D  G  C  S  M  I  D  R  R  M  :  G  V  Y  G  Y  P  I  E  I  Q  A  L  F  F  M  A  L  R  S  A  L  A  M  L  K  H  D  T  E  G  K  E  F  I  E  R  I  V  K  R  L  H  A  L  S  Y  H  M  R  S  Y  F  W  L  D  F  Q  Q  L  N  D  I  Y  R  Y  K  T  E  E  Y  S  H  T  A  V  N  K  F  N  V  I  P  D  S  I  P  E  W  V  F  D  F  V  P  T  R  G  G  Y  F  I  G  N  V  S  P  A  R  M  D  F  R  W  F  A  L  G  N  C  I  A  I  L  S  S  L  A  T  P  E  Q  A  S  A  I  M  D  L  I  E  S  R  W  E  E  L  V  A  D  M  P  L  K  I  C  Y  P  A  I  E  N  H  E  W  R  I  V  T  G  C  D  P  K  N  I  R  W  S  Y  H  N  G  G  S  W  P   : V  L  L  W  L  L  T  A  A  C  I  K  T  G  R  P  Q  I  A  R  R  A  I  D  L  A  E  S  R  L  L  K  D  S  W  P  E  Y  Y  D  G  K  L  G  R  Y  I  G  K  Q  A  R  K  H  Q  T  W  S  I  A  G  Y  L  V  A  K  M  L  L  E  D  P  S  H  L  G  M  I  S  L  E  E  D  K  Q  M  K  P  V  I  K  R  S  S   </first_frame>
            <second_frame>  H  F  Q  L  C  Y  V  L  M  D  A  Q  *  L  I  G  G  W :   V  F  M  D  I  L  L  R  S  K  L  S  S  S  W  H  *  D  L  H  W  P  C  *  S  T  I  Q  K  G  K  N  S  L  R  E  *  *  S  A  C  M  P  *  V  I  I  C  E  V  I  F  G  S  T  F  N  S  *  M  T  Y  I  A  I  K  L  K  S  I  L  T  Q  Q  *  I  S  L  M  L  F  L  I  Q  S  Q  S  G  Y  L  I  L  C  L  H  V  E  V  T  L  L  E  T  L  V  L  Q  G  W  T  S  G  G  L  L  W  V  T  V  L  Q  S  C  L  P  L  P  L  Q  N  K  L  L  L  L  W  I  S  *  N  P  A  G  R  S  *  *  Q  I  C  L  *  R  Y  A  I  Q  Q  L  K  I  T  N  G  G  *  *  L  V  V  I  P  R  I  L  D  G  V  T  I  M  E  D  L  G  Q  :  C  F  C  G  C  *  R  L  P  A  L  R  L  D  G  H  K  L  Q  D  E  Q  L  I  L  L  R  A  A  Y  S  R  T  A  G  L  N  I  M  M  E  S  S  A  D  T  L  V  N  K  Q  G  S  T  R  H  G  Q  L  L  D  I  L  *  Q  R  C  C  W  R  I  L  H  T  W  E  *  S  L  W  R  R  T  S  K  *  S  L  *  S  S  D  H  L  </second_frame>
            <third_frame>   I  S  N  S  A  M  C  *  W  M  L  N  D  *  *  E  D   : G  C  L  W  I  S  Y  *  D  P  S  S  L  L  H  G  T  E  I  C  I  G  H  V  E  A  R  Y  R  R  E  R  I  H  *  E  N  S  E  A  P  A  C  L  E  L  S  Y  A  K  L  F  L  A  R  L  S  T  V  K  *  H  I  S  L  *  N  *  R  V  F  S  H  S  S  K  *  V  *  C  Y  S  *  F  N  P  R  V  G  I  *  F  C  A  Y  T  W  R  L  L  Y  W  K  R  *  S  C  K  D  G  L  Q  V  V  C  F  G  *  L  Y  C  N  L  V  F  P  C  H  S  R  T  S  F  C  Y  Y  G  S  H  R  I  P  L  G  G  A  S  S  R  Y  A  F  E  D  M  L  S  S  N  *  K  S  R  M  A  D  S  N  W  L  *  S  Q  E  Y  *  M  E  L  P  *  W  R  I  L  A  S :   A  F  V  V  A  N  G  C  L  H  *  D  W  T  A  T  N  C  K  T  S  N  *  S  C  *  E  P  L  T  Q  G  Q  L  A  *  I  L  *  W  K  A  R  Q  I  H  W  *  T  S  K  E  A  P  D  M  V  N  C  W  I  S  C  S  K  D  V  A  G  G  S  F  T  L  G  N  D  L  F  G  G  G  Q  A  N  E  A  C  N  Q  A  I  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66174" stop="66121"/>
                    <exon start="64496" stop="63938"/>
                    <exon start="63714" stop="63434"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRSALAMLKHDTEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPEWVFDFVPTRGGYFIGNVSPARMDFRWFALGNCIAILSSLATPEQASAIMDLIESRWEELVADMPLKICYPAIENHEWRIVTGCDPKNIRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIDLAESRLLKDSWPEYYDGKLGRYIGKQARKHQTWSIAGYLVAKMLLEDPSHLGMISLEEDKQMKPVIKRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="68813" PGL_stop="66478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68813" e_stop="68739"/>
            <exon e_start="67236" e_stop="66835"/>
            <exon e_start="66552" e_stop="66478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="68813" e_stop="68739" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="68738" i_stop="67237" i_length="1502"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67236" e_stop="66835" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66834" i_stop="66553" i_length="282"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66552" e_stop="66478" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68813" stop="68739"/>
              <exon start="67236" stop="66835"/>
              <exon start="66552" stop="66478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGATCTCGCCGGCGCTCCGGCCATCATCATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAG : AGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAG : GTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATAGTCAAGAACTTC</gDNA_template>
            <first_frame> A  I  S  P  A  L  R  P  S  S  S  S  E  N  L  P  F  F  S  F  L  S  L  S  K  :  S  T  Q  E  D  *  R  F  K  V  T  M  E  E  T  G  L  R  N  V  G  S  N  C  S  I  S  E  I  D  D  Y  D  L  S  K  L  L  N  K  P  R  L  N  I  E  R  K  R  S  F  D  E  R  S  L  S  E  L  S  I  G  L  S  R  G  L  D  H  Y  E  S  A  S  P  G  Q  S  V  L  D  T  P  V  S  S  A  R  N  S  F  E  P  H  P  M  V  A  E  A  W  D  A  L  R  R  T  M  V  H  F  R  G  Q  P  V  G  T  I  A  A  I  D  H  A  S  E  E  V  L  N  Y  D  Q  :  V  F  V  R  D  F  V  P  S  A  L  A  F  L  M  N  G  E  P  D  I  V  K  N  F </first_frame>
            <second_frame>  R  S  R  R  R  S  G  H  H  H  R  R  K  I  F  H  S  S  H  F  S  L  Y  L  R :   V  L  R  R  I  E  G  L  R  *  P  W  K  K  L  D  *  E  M  W  A  P  T  A  P  F  L  K  *  M  I  M  I  S  L  S  F  *  T  S  Q  G  *  T  *  R  G  R  D  L  L  M  R  G  H  S  V  S  C  P  L  A  Y  L  E  V  *  I  I  M  K  V  P  H  L  A  N  Q  S  W  T  P  Q  F  H  Q  P  G  T  L  L  S  P  I  R  W  L  L  K  H  G  M  L  Y  A  A  L  W  F  I  F  V  V  N  Q  S  V  Q  *  R  Q  L  T  M  P  L  K  K  S  S  T  M  I  R :   F  L  F  E  I  L  C  L  V  L  W  P  S  *  *  M  E  S  Q  I  *  S  R  T   </second_frame>
            <third_frame>   D  L  A  G  A  P  A  I  I  I  V  G  K  S  S  I  L  L  I  S  L  S  I  *   : E  Y  S  G  G  L  K  V  *  G  D  H  G  R  N  W  T  E  K  C  G  L  Q  L  L  H  F  *  N  R  *  L  *  S  L  *  A  S  K  Q  A  K  A  K  H  R  E  E  E  I  F  *  *  E  V  T  Q  *  V  V  H  W  P  I  *  R  F  R  S  L  *  K  C  L  T  W  P  I  S  L  G  H  P  S  F  I  S  P  E  L  F  *  A  P  S  D  G  C  *  S  M  G  C  S  T  P  H  Y  G  S  F  S  W  S  T  S  R  Y  N  S  G  N  *  P  C  L  *  R  S  P  Q  L  *  S   : G  F  C  S  R  F  C  A  *  C  F  G  L  P  D  E  W  R  A  R  Y  S  Q  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67218" stop="66835"/>
                    <exon start="66552" stop="66478"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFKVTMEETGLRNVGSNCSISEIDDYDLSKLLNKPRLNIERKRSFDERSLSELSIGLSRGLDHYESASPGQSVLDTPVSSARNSFEPHPMVAEAWDALRRTMVHFRGQPVGTIAAIDHASEEVLNYDQVFVRDFVPSALAFLMNGEPDIVKNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="80913" PGL_stop="84252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80913" e_stop="81122"/>
            <exon e_start="81380" e_stop="81470"/>
            <exon e_start="82407" e_stop="82539"/>
            <exon e_start="83608" e_stop="83677"/>
            <exon e_start="83773" e_stop="83833"/>
            <exon e_start="83929" e_stop="84252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.757" e_score="0.990"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="80913" e_stop="81122" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.757">
            <gDNA_intron_boundary i_start="81123" i_stop="81379" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81380" e_stop="81470" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81471" i_stop="82406" i_length="936"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82407" e_stop="82539" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.765" acc_prob="0.979">
            <gDNA_intron_boundary i_start="82540" i_stop="83607" i_length="1068"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83608" e_stop="83677" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.947">
            <gDNA_intron_boundary i_start="83678" i_stop="83772" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83773" e_stop="83833" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83834" i_stop="83928" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83929" e_stop="84252" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80913" stop="81122"/>
              <exon start="81380" stop="81470"/>
              <exon start="82407" stop="82539"/>
              <exon start="83608" stop="83677"/>
              <exon start="83773" stop="83833"/>
              <exon start="83929" stop="84252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCGGGTGTATGCTATTTTGGGCCGTCATGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT : TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA : TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT : CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG : CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG : ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</gDNA_template>
            <first_frame> G  R  V  Y  A  I  L  G  R  H  A  H  K  G  A  S  V  V  H  *  L  V  I  A  L  T  D  Y  Q  K  S  S  V  E  R  E  R  D  E  E  E  R  E  S  M  T  T  I  R  R  F  S  C  N  D  L  L  R  F  A  S  V  N  L  D  H  L  T  E  T  :  F  N  M  S  F  Y  M  T  Y  M  A  R  W  P  D  Y  F  H  V  A  K  A  P  G  G  H  I  M  G  Y   : I  M  G  K  V  E  G  Q  G  E  S  W  H  G  H  V  T  A  V  T  V  A  P  E  Y  R  R  Q  Q  L  A  K  K  L  M  Y  L  L  E  E  V  S  D  K  I :   D  K  A  Y  F  V  D  L  F  V  R  A  S  N  T  P  A  I  K  M  Y  E  K  :  L  D  Y  V  V  Y  R  R  V  L  R  Y  Y  S  G  E  E  D  G  L   : D  M  R  K  A  L  S  R  D  V  E  K  K  S  I  I  P  L  K  R  P  V  T  P  D  E  L  E  Y  D  *  V  G  K  S  C  Y  P  M  *  S  Y  L  S  R  S  *  V  *  G  I  D  K  S  C  L  E  M  Y  E  M  K  S  L  G  S  Y  L  *  Y  C  C  A  I  M  F  K  N  Q  V  L  E  F  L  A  L  C  I  C  L  H  A  I  C  S  F  N  I  L  N  C  *  I  F  V  T  Y  *  </first_frame>
            <second_frame>  A  G  C  M  L  F  W  A  V  M  L  T  K  G  H  R  W  S  I  N  W  L  S  P  L  Q  I  T  R  R  V  P  *  R  E  K  E  T  K  K  R  E  K  A  *  R  R  F  V  D  S  A  A  M  T  C  F  A  S  R  Q  *  I  W  I  I  L  L  K  L :   S  T  C  H  F  I  *  L  T  W  Q  D  G  R  I  I  S  M  L  Q  K  L  P  A  A  T  S  W  D  T  :  L  W  E  K  L  K  G  K  V  N  L  G  M  V  T  L  L  Q  *  L  W  L  L  N  I  G  G  S  N  *  P  R  N  *  C  T  C  W  K  K  S  V  I  R   : S  I  R  L  T  L  W  T  C  L  *  E  H  Q  T  H  Q  L  *  R  C  T  R  S :   L  I  T  *  Y  I  G  E  F  Y  A  I  T  Q  G  R  K  M  V  W  :  I  *  E  R  H  Y  R  E  M  *  K  R  S  L  S  S  L  L  N  D  R  *  L  Q  M  N  W  S  M  T  E  S  V  R  V  V  T  P  C  N  L  I  F  Q  E  A  K  F  R  V  S  T  S  L  V  *  K  C  M  R  *  R  V  W  V  L  I  Y  S  T  V  V  P  L  C  L  R  T  K  C  *  N  F  W  P  C  V  F  A  C  M  P  Y  V  L  L  I  F  *  I  V  K  F  L  *  L  I  E </second_frame>
            <third_frame>   P  G  V  C  Y  F  G  P  S  C  S  Q  R  G  I  G  G  P  L  T  G  Y  R  P  Y  R  L  P  E  E  F  R  R  E  R  K  R  R  R  R  E  R  K  H  D  D  D  S  *  I  Q  L  Q  *  L  A  S  L  R  V  S  E  F  G  S  S  Y  *  N   : F  Q  H  V  I  L  Y  D  L  H  G  K  M  A  G  L  F  P  C  C  K  S  S  R  R  P  H  H  G  I  H :   Y  G  K  S  *  R  A  R  *  I  L  A  W  S  R  Y  C  S  N  C  G  S  *  I  S  E  A  A  I  S  Q  E  I  D  V  P  A  G  R  S  Q  *  *  D  :  R  *  G  L  L  C  G  L  V  C  E  S  I  K  H  T  S  Y  K  D  V  R  E   : A  *  L  R  S  I  *  A  S  F  T  L  L  L  R  G  G  R  W  F  G :   Y  E  K  G  T  I  A  R  C  R  K  E  V  Y  H  P  S  *  T  T  G  N  S  R  *  I  G  V  *  L  S  R  *  E  L  L  P  H  V  I  L  S  F  K  K  L  S  L  G  Y  R  Q  V  L  S  R  N  V  *  D  E  E  S  G  F  L  S  I  V  L  L  C  H  Y  V  *  E  P  S  A  R  I  S  G  L  V  Y  L  L  A  C  H  M  F  F  *  Y  F  K  L  L  N  F  C  D  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80973" stop="81122"/>
                    <exon start="81380" stop="81470"/>
                    <exon start="82407" stop="82539"/>
                    <exon start="83608" stop="83677"/>
                    <exon start="83773" stop="83833"/>
                    <exon start="83929" stop="84020"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVIALTDYQKSSVERERDEEERESMTTIRRFSCNDLLRFASVNLDHLTETFNMSFYMTYMARWPDYFHVAKAPGGHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMYLLEEVSDKIDKAYFVDLFVRASNTPAIKMYEKLDYVVYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPVTPDELEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="84797" PGL_stop="88829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84797" e_stop="85525"/>
            <exon e_start="87797" e_stop="87970"/>
            <exon e_start="88096" e_stop="88829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84797" e_stop="85525" e_length="729"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="85526" i_stop="87796" i_length="2271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87797" e_stop="87970" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.946">
            <gDNA_intron_boundary i_start="87971" i_stop="88095" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="88096" e_stop="88829" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84797" stop="85525"/>
              <exon start="87797" stop="87970"/>
              <exon start="88096" stop="88829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG : AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT : GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</gDNA_template>
            <first_frame> I  *  T  V  C  L  Y  *  S  S  M  T  I  L  G  R  T  I  K  Q  F  Y  *  S  N  H  R  *  M  K  T  A  P  S  R  L  P  I  I  N  F  R  S  I  I  L  I  T  P  S  P  L  S  P  *  V  T  K  G  G  R  E  R  K  K  K  G  D  F  F  C  V  F  L  N  *  K  M  Q  L  K  S  V  N  T  F  A  I  T  I  M  L  G  F  T  L  I  I  L  F  F  S  G  F  L  D  F  P  L  H  T  S  S  S  I  P  S  T  K  N  Q  I  L  T  T  I  S  V  S  E  P  D  P  F  S  N  L  L  S  T  F  K  K  W  D  S  Q  V  G  C  A  K  F  R  G  E  H  K  G  L  L  G  N  G  L  L  L  D  S  S  S  G  S  L  Q  N  V  D  D  G  E  L  K  C  N  E  L  K  M  D  H  V  S  V  L  V  K  G  W  T  W  I  P  D  N  L  D  N  L  Y  S  C  R  C  G  L  S  C  L  W  T  K  S  S  V  V  A  D  K  P  D  A  L  L  F  E  T  A  T  P  P  V  E  :  R  R  R  G  D  P  L  R  V  Y  M  D  L  E  A  G  R  K  K  S  G  Y  E  D  I  F  I  G  Y  H  A  E  D  D  V  Q  S  T  Y  A  G  A  L  F  H  N  N  R  N  Y  H  L  S  P  Y  K  N  N  :  D  T  L  V  Y  W  S  S  S  R  C  L  P  Q  R  N  Q  L  A  K  R  L  L  S  L  L  P  S  H  S  F  G  K  C  L  N  N  V  G  G  L  D  K  A  L  S  F  Y  P  E  C  I  K  D  S  N  E  A  P  K  W  W  D  H  L  H  C  A  M  S  H  Y  K  F  V  L  A  I  E  N  T  K  T  E  S  Y  V  T  E  K  L  F  Y  A  L  D  S  G  A  V  P  I  Y  F  G  A  P  N  V  W  D  F  V  P  P  H  S  I  I  D  G  S  K  F  S  S  L  E  E  L  A  S  Y  V  K  A  I  A  N  N  P  V  A  Y  A  E  Y  H  A  W  R  R  C  G  V  L  G  N  Y  R  K  T  R  A  A  S  L  D  T  L  P  C  R  L  C  E  A  I  S  K  R  N  G  R  N  A  K  A  S  *  L  F  N  S  K  A  T  G  Y  *  A  L  N  C  V  L  R  S  T  S  V  V  S  K  Q  C  M  S  C  *  D  L  G  Y  S  G  L  *  R  S  Q  T  L  T  N  *  Y  Y  I  N  F  G  L  T   </first_frame>
            <second_frame>  S  K  Q  Y  A  Y  I  S  L  P  *  Q  Y  *  V  E  Q  S  N  N  F  T  N  L  T  T  G  R  *  K  L  P  L  Q  D  Y  Q  L  S  I  S  D  R  L  F  *  *  P  L  P  L  S  L  L  E  *  P  R  E  G  E  R  E  K  K  K  V  I  F  F  V  Y  S  *  T  E  K  C  N  *  N  L  S  T  H  L  Q  S  Q  S  C  W  V  L  H  L  S  F  Y  S  S  L  D  F  L  I  S  H  F  T  L  L  L  Q  S  H  Q  R  K  I  K  S  *  P  P  S  Q  F  P  S  P  T  L  L  V  T  C  *  A  L  L  R  N  G  I  L  K  W  V  V  L  S  L  G  G  N  I  K  G  Y  *  E  M  G  C  C  W  I  L  L  L  V  L  C  K  M  L  M  M  V  S  *  S  V  M  S  *  R  W  I  M  *  V  Y  *  L  K  G  G  L  G  F  L  I  I  W  I  I  C  T  L  V  G  V  G  L  A  V  C  G  L  N  L  R  L  L  L  I  N  L  M  L  C  C  L  R  Q  L  L  L  L  L  R :   D  V  E  V  I  H  Y  V  Y  T  W  I  L  K  L  V  E  R  N  Q  G  M  R  I  Y  L  L  A  I  M  Q  K  T  M  S  S  Q  P  M  R  A  H  F  F  I  T  I  G  I  I  T  F  L  L  I  R  T  M :   I  L  L  F  T  G  L  H  H  V  V  F  L  K  G  T  S  L  P  N  V  Y  S  A  C  Y  P  P  I  H  L  A  S  A  *  T  M  L  E  V  *  T  R  H  S  H  F  I  L  S  V  S  R  I  L  M  K  H  P  N  G  G  I  I  C  I  A  Q  C  H  I  T  S  L  S  L  R  L  R  T  P  R  Q  K  V  M  *  Q  R  S  Y  F  T  H  W  T  L  V  Q  S  P  F  I  L  V  P  R  M  S  G  T  L  Y  L  H  I  Q  *  L  M  E  A  S  L  A  L  W  R  N  W  P  R  T  L  R  P  L  L  I  I  Q  *  L  M  Q  S  T  M  L  G  E  D  V  A  C  W  V  T  I  E  K  H  G  Q  L  V  W  I  P  C  L  A  G  Y  V  K  P  S  V  K  E  M  E  E  M  Q  K  P  L  D  Y  S  T  A  K  L  Q  G  T  R  L  *  I  V  Y  L  D  Q  L  V  L  F  L  N  S  A  C  L  V  R  T  *  D  I  V  A  C  R  D  L  K  P  L  Q  I  N  T  T  *  I  L  V  *  Q  </second_frame>
            <third_frame>   L  N  S  M  L  I  L  V  F  H  D  N  I  R  S  N  N  Q  T  I  L  L  I  *  P  P  V  D  E  N  C  P  F  K  T  T  N  Y  Q  F  Q  I  D  Y  F  D  N  P  F  P  S  L  S  L  S  D  Q  G  R  E  R  E  K  K  K  R  *  F  F  L  C  I  L  E  L  K  N  A  I  E  I  C  Q  H  I  C  N  H  N  H  V  G  F  Y  T  Y  H  S  I  L  L  W  I  S  *  F  P  T  S  H  F  F  F  N  P  I  N  E  K  S  N  L  D  H  H  L  S  F  R  A  R  P  F  *  *  L  V  E  H  F  *  E  M  G  F  S  S  G  L  C  *  V  *  G  G  T  *  R  V  I  R  K  W  V  V  V  G  F  F  F  W  F  F  A  K  C  *  *  W  *  V  E  V  *  *  A  K  D  G  S  C  E  C  I  S  *  R  V  D  L  D  S  *  *  F  G  *  F  V  L  L  S  V  W  A  *  L  F  V  D  *  I  F  G  C  C  *  *  T  *  C  F  V  V  *  D  S  Y  S  S  C  *   : E  T  S  R  *  S  I  T  C  I  H  G  S  *  S  W  *  K  E  I  R  V  *  G  Y  I  Y  W  L  S  C  R  R  R  C  P  V  N  L  C  G  R  T  F  S  *  Q  S  E  L  S  P  F  S  L  *  E  Q   : *  Y  S  C  L  L  V  F  I  T  L  S  S  S  K  E  P  A  C  Q  T  S  T  Q  L  A  T  L  P  F  I  W  Q  V  P  E  Q  C  W  R  S  R  Q  G  T  L  I  L  S  *  V  Y  Q  G  F  *  *  S  T  Q  M  V  G  S  F  A  L  R  N  V  T  L  Q  V  C  P  C  D  *  E  H  Q  D  R  K  L  C  N  R  E  V  I  L  R  T  G  L  W  C  S  P  H  L  F  W  C  P  E  C  L  G  L  C  T  S  T  F  N  N  *  W  K  Q  V  *  L  F  G  G  I  G  L  V  R  *  G  H  C  *  *  S  S  S  L  C  R  V  P  C  L  E  K  M  W  R  A  G  *  L  *  K  N  T  G  S  *  S  G  Y  L  A  L  Q  V  M  *  S  H  Q  *  K  K  W  K  K  C  K  S  L  L  T  I  Q  Q  Q  S  Y  R  V  L  G  F  K  L  C  T  *  I  N  *  C  C  F  *  T  V  H  V  L  L  G  L  R  I  *  W  L  V  E  I  S  N  P  Y  K  L  I  L  H  K  F  W  S  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85025" stop="85525"/>
                    <exon start="87797" stop="87970"/>
                    <exon start="88096" stop="88665"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMQLKSVNTFAITIMLGFTLIILFFSGFLDFPLHTSSSIPSTKNQILTTISVSEPDPFSNLLSTFKKWDSQVGCAKFRGEHKGLLGNGLLLDSSSGSLQNVDDGELKCNELKMDHVSVLVKGWTWIPDNLDNLYSCRCGLSCLWTKSSVVADKPDALLFETATPPVERRRGDPLRVYMDLEAGRKKSGYEDIFIGYHAEDDVQSTYAGALFHNNRNYHLSPYKNNDTLVYWSSSRCLPQRNQLAKRLLSLLPSHSFGKCLNNVGGLDKALSFYPECIKDSNEAPKWWDHLHCAMSHYKFVLAIENTKTESYVTEKLFYALDSGAVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKAIANNPVAYAEYHAWRRCGVLGNYRKTRAASLDTLPCRLCEAISKRNGRNAKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="89826" PGL_stop="89372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89826" e_stop="89372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="89826" e_stop="89372" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89826" stop="89372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340777" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCTATTCACAAATGATATATCCAATTCCTGATAGGAGCTTGTGGAATGAGGCTGGGGAGGGTACAGACGGTGGGGGAGCAAATGTTGATATTATAATTCGACCACCAAAAACCCGACGTCCTCCTGGCAGGCCCAAAAAGAAGGTTCTTCGCATAGAGAGTTTCAAGCGTCCAAAGAGAGTCGTTCAATGTGGTCGATGCCATATGTTGGGACATTCTCAGAAAAAATGCTCGTTGCCTAGTTAAATCCTTGGTTAGTTGCCAGCTTTCTTTGCTCATGCCGAAAACTTTCATTAAAGAGTCTCAAGCTGTATGTATTTTAGTAATGGCTTAGTCATGAGATTGTTACTTGGCCTCTGCCTTATCAGTTCTGCAGTTGTCTTTGAATATATCAGGAACATATTGTGTACCTTGTACTTCATAATACTATATGGCTAATTGAGTTCCCATCGA</gDNA_template>
            <first_frame> K  P  I  H  K  *  Y  I  Q  F  L  I  G  A  C  G  M  R  L  G  R  V  Q  T  V  G  E  Q  M  L  I  L  *  F  D  H  Q  K  P  D  V  L  L  A  G  P  K  R  R  F  F  A  *  R  V  S  S  V  Q  R  E  S  F  N  V  V  D  A  I  C  W  D  I  L  R  K  N  A  R  C  L  V  K  S  L  V  S  C  Q  L  S  L  L  M  P  K  T  F  I  K  E  S  Q  A  V  C  I  L  V  M  A  *  S  *  D  C  Y  L  A  S  A  L  S  V  L  Q  L  S  L  N  I  S  G  T  Y  C  V  P  C  T  S  *  Y  Y  M  A  N  *  V  P  I   </first_frame>
            <second_frame>  N  L  F  T  N  D  I  S  N  S  *  *  E  L  V  E  *  G  W  G  G  Y  R  R  W  G  S  K  C  *  Y  Y  N  S  T  T  K  N  P  T  S  S  W  Q  A  Q  K  E  G  S  S  H  R  E  F  Q  A  S  K  E  S  R  S  M  W  S  M  P  Y  V  G  T  F  S  E  K  M  L  V  A  *  L  N  P  W  L  V  A  S  F  L  C  S  C  R  K  L  S  L  K  S  L  K  L  Y  V  F  *  *  W  L  S  H  E  I  V  T  W  P  L  P  Y  Q  F  C  S  C  L  *  I  Y  Q  E  H  I  V  Y  L  V  L  H  N  T  I  W  L  I  E  F  P  S  </second_frame>
            <third_frame>   T  Y  S  Q  M  I  Y  P  I  P  D  R  S  L  W  N  E  A  G  E  G  T  D  G  G  G  A  N  V  D  I  I  I  R  P  P  K  T  R  R  P  P  G  R  P  K  K  K  V  L  R  I  E  S  F  K  R  P  K  R  V  V  Q  C  G  R  C  H  M  L  G  H  S  Q  K  K  C  S  L  P  S  *  I  L  G  *  L  P  A  F  F  A  H  A  E  N  F  H  *  R  V  S  S  C  M  Y  F  S  N  G  L  V  M  R  L  L  L  G  L  C  L  I  S  S  A  V  V  F  E  Y  I  R  N  I  L  C  T  L  Y  F  I  I  L  Y  G  *  L  S  S  H  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89824" stop="89579"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYSQMIYPIPDRSLWNEAGEGTDGGGANVDIIIRPPKTRRPPGRPKKKVLRIESFKRPKRVVQCGRCHMLGHSQKKCSLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="106126" PGL_stop="107138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106126" e_stop="107138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="106126" e_stop="107138" e_length="1013"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106126" stop="107138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGCTGAAAAAATTATGGAAAATTGAGCTGTTTCAGAATAAGTTGACAGGGGAACTTCCTGTAGAACTGGCAGAGCTCTCTCTTTTGCAGGAATTTGATATCTCTAGCAACCATATGTATGGGAAGCTGCCTCCAGAAATTGGGAACCTGAAGAAGTTAACAGTTTTTCATGTATTCATGAATAACTTCTCTGGTGAAATTCCTCCTGGTTTTGGAGATATGCAGCATCTTAATGGCTTTTCCGTGTACAGGAACAATTTTTCTGGGGCATTTCCAGCAAATCTTGGTCGGTTTTCGCCCCTGAATAGCATAGACATATCTGAAAACAAGTTTACTGGTGGATTCCCAAAGTACTTGTGCCAAAATGGGAACCTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCGAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTTCACACAACAGACTCACTGGTACAATACCAACTAGCTTGGACAATCTGAAGCTGTCTTCATTGGATCTCTCTAACAACCAGCTATCAGGAGAGGTATCATTAGATCTTTTAACGCTG</gDNA_template>
            <first_frame> A  S  *  K  N  Y  G  K  L  S  C  F  R  I  S  *  Q  G  N  F  L  *  N  W  Q  S  S  L  F  C  R  N  L  I  S  L  A  T  I  C  M  G  S  C  L  Q  K  L  G  T  *  R  S  *  Q  F  F  M  Y  S  *  I  T  S  L  V  K  F  L  L  V  L  E  I  C  S  I  L  M  A  F  P  C  T  G  T  I  F  L  G  H  F  Q  Q  I  L  V  G  F  R  P  *  I  A  *  T  Y  L  K  T  S  L  L  V  D  S  Q  S  T  C  A  K  M  G  T  C  S  F  C  *  L  L  R  T  V  S  Q  G  S  F  R  V  L  T  R  R  A  S  L  Y  R  D  *  G  S  V  R  I  N  F  L  G  K  F  P  V  M  Y  G  D  F  Q  M  Y  *  W  W  I  S  V  I  T  N  S  V  E  L  C  P  R  K  L  G  L  L  L  A  *  I  S  W  Y  Y  Q  I  T  D  F  Q  V  S  F  Q  K  N  L  G  N  S  H  S  W  K  G  F  T  W  I  T  I  T  S  R  V  Q  Y  L  L  N  L  E  N  *  S  K  F  H  L  C  I  W  R  K  T  H  S  P  G  L  S  H  Q  N  W  V  N  F  L  G  L  Q  T  *  I  L  L  Q  I  F  L  Q  V  A  F  P  I  P  Y  Q  *  *  P  L  *  T  L  *  I  F  H  T  T  D  S  L  V  Q  Y  Q  L  A  W  T  I  *  S  C  L  H  W  I  S  L  T  T  S  Y  Q  E  R  Y  H  *  I  F  *  R   </first_frame>
            <second_frame>  Q  A  E  K  I  M  E  N  *  A  V  S  E  *  V  D  R  G  T  S  C  R  T  G  R  A  L  S  F  A  G  I  *  Y  L  *  Q  P  Y  V  W  E  A  A  S  R  N  W  E  P  E  E  V  N  S  F  S  C  I  H  E  *  L  L  W  *  N  S  S  W  F  W  R  Y  A  A  S  *  W  L  F  R  V  Q  E  Q  F  F  W  G  I  S  S  K  S  W  S  V  F  A  P  E  *  H  R  H  I  *  K  Q  V  Y  W  W  I  P  K  V  L  V  P  K  W  E  P  A  V  F  A  S  Y  *  E  Q  F  L  R  G  V  S  E  Y  L  L  V  V  Q  A  F  T  E  I  E  G  Q  *  E  S  T  F  W  E  N  S  Q  *  C  M  G  T  S  K  C  T  D  G  G  F  Q  *  *  R  I  Q  W  N  Y  V  P  G  N  W  G  C  Y  *  P  E  S  V  G  I  I  K  *  Q  I  F  R  *  A  S  K  R  T  W  E  T  H  T  V  G  K  A  L  L  G  *  Q  *  L  L  G  C  N  T  F  *  T  W  K  T  K  A  N  F  I  F  A  F  G  E  K  L  I  L  R  D  Y  P  I  R  I  G  *  I  F  *  A  C  R  P  E  S  C  F  K  S  S  Y  R  *  H  S  Q  F  L  I  N  N  D  L  F  E  L  S  E  S  F  T  Q  Q  T  H  W  Y  N  T  N  *  L  G  Q  S  E  A  V  F  I  G  S  L  *  Q  P  A  I  R  R  G  I  I  R  S  F  N  A  </second_frame>
            <third_frame>   K  L  K  K  L  W  K  I  E  L  F  Q  N  K  L  T  G  E  L  P  V  E  L  A  E  L  S  L  L  Q  E  F  D  I  S  S  N  H  M  Y  G  K  L  P  P  E  I  G  N  L  K  K  L  T  V  F  H  V  F  M  N  N  F  S  G  E  I  P  P  G  F  G  D  M  Q  H  L  N  G  F  S  V  Y  R  N  N  F  S  G  A  F  P  A  N  L  G  R  F  S  P  L  N  S  I  D  I  S  E  N  K  F  T  G  G  F  P  K  Y  L  C  Q  N  G  N  L  Q  F  L  L  A  I  E  N  S  F  S  G  E  F  P  S  T  Y  S  S  C  K  P  L  Q  R  L  R  V  S  K  N  Q  L  S  G  K  I  P  S  D  V  W  G  L  P  N  V  L  M  V  D  F  S  D  N  E  F  S  G  T  M  S  P  E  I  G  A  A  T  S  L  N  Q  L  V  L  S  N  N  R  F  S  G  E  L  P  K  E  L  G  K  L  T  Q  L  E  R  L  Y  L  D  N  N  N  F  S  G  A  I  P  S  E  L  G  K  L  K  Q  I  S  S  L  H  L  E  K  N  S  F  S  G  T  I  P  S  E  L  G  E  F  S  R  L  A  D  L  N  L  A  S  N  L  L  T  G  S  I  P  N  S  L  S  I  M  T  S  L  N  S  L  N  L  S  H  N  R  L  T  G  T  I  P  T  S  L  D  N  L  K  L  S  S  L  D  L  S  N  N  Q  L  S  G  E  V  S  L  D  L  L  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106128" stop="107138"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKKLWKIELFQNKLTGELPVELAELSLLQEFDISSNHMYGKLPPEIGNLKKLTVFHVFMNNFSGEIPPGFGDMQHLNGFSVYRNNFSGAFPANLGRFSPLNSIDISENKFTGGFPKYLCQNGNLQFLLAIENSFSGEFPSTYSSCKPLQRLRVSKNQLSGKIPSDVWGLPNVLMVDFSDNEFSGTMSPEIGAATSLNQLVLSNNRFSGELPKELGKLTQLERLYLDNNNFSGAIPSELGKLKQISSLHLEKNSFSGTIPSELGEFSRLADLNLASNLLTGSIPNSLSIMTSLNSLNLSHNRLTGTIPTSLDNLKLSSLDLSNNQLSGEVSLDLLTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="113068" PGL_stop="108608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113068" e_stop="112811"/>
            <exon e_start="112495" e_stop="112397"/>
            <exon e_start="111310" e_stop="111182"/>
            <exon e_start="111065" e_stop="110937"/>
            <exon e_start="110335" e_stop="110189"/>
            <exon e_start="109798" e_stop="109724"/>
            <exon e_start="109111" e_stop="108608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="113068" e_stop="112811" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112810" i_stop="112496" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112495" e_stop="112397" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="112396" i_stop="111311" i_length="1086"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111310" e_stop="111182" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.475" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111181" i_stop="111066" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111065" e_stop="110937" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.997">
            <gDNA_intron_boundary i_start="110936" i_stop="110336" i_length="601"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="110335" e_stop="110189" e_length="147"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="110188" i_stop="109799" i_length="390"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109798" e_stop="109724" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.931">
            <gDNA_intron_boundary i_start="109723" i_stop="109112" i_length="612"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="109111" e_stop="108608" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113068" stop="112811"/>
              <exon start="112495" stop="112397"/>
              <exon start="111310" stop="111182"/>
              <exon start="111065" stop="110937"/>
              <exon start="110335" stop="110189"/>
              <exon start="109798" stop="109724"/>
              <exon start="109111" stop="108608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG : GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG : TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG : ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA : GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG : GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG : GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAGCAGAAAAAAA</gDNA_template>
            <first_frame> C  K  R  K  K  E  K  H  *  D  L  Y  L  A  R  S  R  S  A  M  A  S  C  C  S  L  S  F  S  T  V  S  S  K  P  N  K  P  Y  S  S  P  I  S  S  S  L  E  L  P  F  T  S  Q  L  P  F  S  K  K  Y  S  L  Y  S  N  H  T  L  L  Q  T  Q  C  R  K  T  Q  S  P  D  C  P  S  F  L  :  V  V  G  S  A  K  K  Q  E  P  L  R  V  M  I  S  G  A  P  A  S  G  K  G  T  Q  C  E  L  I  T  K  K  :  Y  D  L  V  H  I  A  A  G  D  L  L  R  A  E  I  A  A  G  T  E  N  G  R  R  A  K  E  Y  M  D  K  G  Q  L  V  P  N  E  I  V  V  T  :  M  V  K  E  R  L  M  C  P  D  S  Q  E  K  G  W  L  L  D  G  Y  P  R  S  L  S  Q  A  V  A  L  K  E  F  Q  P  N  L  F  I  L  L  E  :  V  P  E  E  I  L  V  E  R  V  V  G  R  R  L  D  P  V  T  G  R  I  Y  H  L  K  Y  S  P  P  E  T  D  E  I  A  A  R  L  T  Q  R  F  D  D  T  E  E  K  :  V  K  L  R  L  H  T  H  R  Q  N  V  E  S  V  L  S  M  Y  K  D  T  I  F  Q  :  V  D  G  S  V  S  K  E  E  V  F  A  Q  I  D  G  A  L  T  Q  L  L  E  A  K  E  *  R  F  G  T  V  M  S  *  R  S  G  K  I  C  R  M  Y  H  V  I  L  R  R  I  I  E  D  K  R  V  T  L  L  V  A  I  P  L  I  Q  M  Y  E  M  F  M  Y  I  V  F  A  S  N  Y  L  C  G  Y  S  L  N  Q  I  Q  S  L  L  Q  N  L  F  C  C  K  A  Q  L  A  S  D  I  V  S  F  E  F  T  P  I  R  L  *  D  V  I  R  V  *  D  L  L  I  Y  V  L  N  I  S  H  V  F  L  P  I  W  D  S  *  S  W  T  *  I  P  R  F  L  I  N  P  T  S  E  V  S  N  H  S  R  K  K </first_frame>
            <second_frame>  V  K  E  K  K  K  N  T  E  I  S  I  *  H  G  A  E  A  P  W  L  R  A  V  H  *  A  S  Q  Q  S  L  Q  S  L  T  S  L  T  H  H  Q  F  L  L  L  L  S  S  P  L  L  P  S  C  H  F  L  K  N  I  H  F  I  P  I  I  P  F  S  K  L  N  A  G  K  P  N  H  R  I  V  P  V  S  W :   L  W  D  L  R  K  S  K  N  L  *  G  *  *  Y  R  E  L  L  L  L  V  K  E  R  N  A  S  S  L  P  R  S :   T  I  W  C  I  L  L  L  E  I  Y  *  G  L  K  L  L  Q  A  L  K  M  G  G  E  Q  R  S  I  W  I  K  D  N  W  Y  Q  T  R  *  L  *  R :   W  S  K  S  G  *  C  V  Q  T  L  K  K  R  V  G  F  *  M  D  I  L  G  A  C  L  K  Q  *  L  S  K  S  S  S  Q  T  F  S  F  F  W  K :   Y  L  K  R  Y  L  L  R  E  W  L  A  V  D  *  I  L  *  L  G  E  Y  T  I  *  S  I  L  R  Q  R  P  M  K  S  L  Q  G  L  P  S  A  L  M  I  Q  K  K  R :   *  S  C  V  C  T  L  T  V  K  M  W  N  Q  F  S  Q  C  T  K  I  L  Y  S  R :   W  T  G  A  F  P  K  R  K  Y  L  L  K  L  M  V  H  *  L  N  F  L  K  Q  R  S  E  D  L  E  P  *  C  H  R  D  Q  E  K  S  A  E  C  T  M  *  Y  S  G  G  S  S  K  T  K  E  *  H  C  W  L  L  S  L  L  Y  K  C  M  K  C  L  C  I  S  Y  L  L  P  T  I  Y  V  D  I  H  *  I  R  F  K  V  Y  Y  K  T  C  F  V  V  R  P  S  S  L  V  I  L  L  A  S  S  L  H  L  S  G  F  K  T  S  L  G  C  K  T  C  L  F  M  Y  S  T  Y  L  M  Y  F  C  L  F  G  T  L  N  H  G  H  K  Y  P  D  F  *  L  I  Q  L  L  K  F  P  I  T  A  E  K   </second_frame>
            <third_frame>   *  K  K  K  R  K  T  L  R  S  L  F  S  T  E  Q  K  R  H  G  F  V  L  F  I  E  L  L  N  S  L  F  K  A  *  Q  A  L  L  I  T  N  F  F  F  S  *  A  P  L  Y  F  P  V  A  I  F  *  K  I  F  T  L  F  Q  S  Y  P  S  P  N  S  M  P  E  N  P  I  T  G  L  S  Q  F  L   : G  C  G  I  C  E  K  A  R  T  F  E  G  N  D  I  G  S  S  C  F  W  *  R  N  A  M  R  A  H  Y  Q  E   : V  R  F  G  A  Y  C  C  W  R  F  I  E  G  *  N  C  C  R  H  *  K  W  E  E  S  K  G  V  Y  G  *  R  T  I  G  T  K  R  D  S  C  N   : D  G  Q  R  A  V  D  V  S  R  L  S  R  K  G  L  A  F  R  W  I  S  S  E  L  V  S  S  S  S  S  Q  R  V  P  A  K  P  F  H  S  S  G   : S  T  *  R  D  T  C  *  E  S  G  W  P  *  T  R  S  C  N  W  E  N  I  P  F  E  V  F  S  A  R  D  R  *  N  R  C  K  A  Y  P  A  L  *  *  Y  R  R  K   : G  E  A  A  S  A  H  S  P  S  K  C  G  I  S  S  L  N  V  Q  R  Y  Y  I  P   : G  G  R  E  R  F  Q  R  G  S  I  C  S  N  *  W  C  I  N  S  T  S  *  S  K  G  V  K  I  W  N  R  N  V  I  E  I  R  K  N  L  Q  N  V  P  C  N  T  Q  E  D  H  R  R  Q  K  S  N  I  V  G  C  Y  P  S  Y  T  N  V  *  N  V  Y  V  Y  R  I  C  F  Q  L  S  M  W  I  F  I  E  S  D  S  K  F  T  T  K  L  V  L  L  *  G  P  A  R  *  *  Y  C  *  L  R  V  Y  T  Y  P  A  L  R  R  H  *  G  V  R  P  A  Y  L  C  T  Q  H  I  S  C  I  F  A  Y  L  G  L  L  I  M  D  I  N  T  Q  I  S  D  *  S  N  F  *  S  F  Q  S  Q  Q  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113041" stop="112811"/>
                    <exon start="112495" stop="112397"/>
                    <exon start="111310" stop="111182"/>
                    <exon start="111065" stop="110937"/>
                    <exon start="110335" stop="110189"/>
                    <exon start="109798" stop="109724"/>
                    <exon start="109111" stop="109031"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLYLARSRSAMASCCSLSFSTVSSKPNKPYSSPISSSLELPFTSQLPFSKKYSLYSNHTLLQTQCRKTQSPDCPSFLVVGSAKKQEPLRVMISGAPASGKGTQCELITKKYDLVHIAAGDLLRAEIAAGTENGRRAKEYMDKGQLVPNEIVVTMVKERLMCPDSQEKGWLLDGYPRSLSQAVALKEFQPNLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPPETDEIAARLTQRFDDTEEKVKLRLHTHRQNVESVLSMYKDTIFQVDGSVSKEEVFAQIDGALTQLLEAKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0286N17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109006" stop="108755"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSGKICRMYHVILRRIIEDKRVTLLVAIPLIQMYEMFMYIVFASNYLCGYSLNQIQSLLQNLFCCKAQLASDIVSFEFTPIRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="108637" PGL_stop="109097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108637" e_stop="109097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="108637" e_stop="109097" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108637" stop="109097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTGGATTAATCAGAAATCTGGGTATTTATGTCCATGATTAAGAGTCCCAAATAGGCAAAAATACATGAGATATGTTGAGTACATAAATAAGCAGGTCTTACACCCTAATGACGTCTTAAAGCCGGATAGGTGTAAACTCGAAGCTAACAATATCACTAGCGAGCTGGGCCTTACAACAAAACAAGTTTTGTAGTAAACTTTGAATCTGATTCAATGAATATCCACATAGATAGTTGGAAGCAAATACGATATACATAAACATTTCATACATTTGTATAAGAGGGATAGCAACCAACAATGTTACTCTTTTGTCTTCGATGATCCTCCTGAGTATTACATGGTACATTCTGCAGATTTTTCCTGATCTCTATGACATTACGGTTCCAAATCTTCACTCCTTTGCTTCAAGAAGTTGAGTTAATGCACCATCAATTTGAGCAAATACTTCCTCTTTGGAA</gDNA_template>
            <first_frame> K  L  D  *  S  E  I  W  V  F  M  S  M  I  K  S  P  K  *  A  K  I  H  E  I  C  *  V  H  K  *  A  G  L  T  P  *  *  R  L  K  A  G  *  V  *  T  R  S  *  Q  Y  H  *  R  A  G  P  Y  N  K  T  S  F  V  V  N  F  E  S  D  S  M  N  I  H  I  D  S  W  K  Q  I  R  Y  T  *  T  F  H  T  F  V  *  E  G  *  Q  P  T  M  L  L  F  C  L  R  *  S  S  *  V  L  H  G  T  F  C  R  F  F  L  I  S  M  T  L  R  F  Q  I  F  T  P  L  L  Q  E  V  E  L  M  H  H  Q  F  E  Q  I  L  P  L  W   </first_frame>
            <second_frame>  S  W  I  N  Q  K  S  G  Y  L  C  P  *  L  R  V  P  N  R  Q  K  Y  M  R  Y  V  E  Y  I  N  K  Q  V  L  H  P  N  D  V  L  K  P  D  R  C  K  L  E  A  N  N  I  T  S  E  L  G  L  T  T  K  Q  V  L  *  *  T  L  N  L  I  Q  *  I  S  T  *  I  V  G  S  K  Y  D  I  H  K  H  F  I  H  L  Y  K  R  D  S  N  Q  Q  C  Y  S  F  V  F  D  D  P  P  E  Y  Y  M  V  H  S  A  D  F  S  *  S  L  *  H  Y  G  S  K  S  S  L  L  C  F  K  K  L  S  *  C  T  I  N  L  S  K  Y  F  L  F  G  </second_frame>
            <third_frame>   V  G  L  I  R  N  L  G  I  Y  V  H  D  *  E  S  Q  I  G  K  N  T  *  D  M  L  S  T  *  I  S  R  S  Y  T  L  M  T  S  *  S  R  I  G  V  N  S  K  L  T  I  S  L  A  S  W  A  L  Q  Q  N  K  F  C  S  K  L  *  I  *  F  N  E  Y  P  H  R  *  L  E  A  N  T  I  Y  I  N  I  S  Y  I  C  I  R  G  I  A  T  N  N  V  T  L  L  S  S  M  I  L  L  S  I  T  W  Y  I  L  Q  I  F  P  D  L  Y  D  I  T  V  P  N  L  H  S  F  A  S  R  S  *  V  N  A  P  S  I  *  A  N  T  S  S  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0286N17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="121028" PGL_stop="121409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121028" e_stop="121409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121028" e_stop="121409" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121028" stop="121409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</gDNA_template>
            <first_frame> H  K  E  K  P  F  D  E  D  D  S  D  D  D  D  A  D  D  K  E  N  D  P  S  K  S  H  H  H  G  D  H  C  C  S  K  Q  D  H  G  G  E  A  S  T  S  F  S  E  D  H  *  C  I  *  L  V  S  L  L  N  F  L  L  R  R  K  K  M  L  F  L  G  *  I  C  *  L  V  L  F  E  I  F  C  C  W  E  S  D  *  N  L  C  F  D  D  M  K  L  N  N  *  Y  *  C  Y  F  L  Y  Y  S  A  C  K  K  K  I  S  F  L  K  *  I  *  V  F  </first_frame>
            <second_frame>  T  K  K  S  L  L  M  K  T  I  A  M  M  M  M  P  M  T  K  K  M  T  H  Q  R  V  I  I  M  G  I  I  A  V  L  N  R  I  M  E  E  K  L  V  R  V  F  R  K  I  T  D  V  F  D  L  *  V  C  *  T  F  C  *  E  G  K  K  C  Y  F  W  G  K  F  V  N  W  Y  Y  L  R  S  S  V  V  G  N  L  I  E  I  Y  V  S  M  T  *  S  *  T  I  D  I  S  V  T  S  Y  T  I  L  L  V  R  K  K  F  H  F  *  S  E  F  E  Y  L </second_frame>
            <third_frame>   Q  R  K  A  F  *  *  R  R  *  R  *  *  *  C  R  *  Q  R  K  *  P  I  K  E  S  S  S  W  G  S  L  L  F  *  T  G  S  W  R  R  S  *  Y  E  F  F  G  R  S  L  M  Y  L  T  C  K  F  V  E  L  F  V  K  K  E  K  N  V  I  F  G  V  N  L  L  I  G  I  I  *  D  L  L  L  L  G  I  *  L  K  F  M  F  R  *  H  E  V  E  Q  L  I  L  V  L  L  L  I  L  F  C  L  *  E  K  N  F  I  F  E  V  N  L  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0286N17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 40 chains have been computed
$ 
$ memory statistics:
$ 81936 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 5121 bytes was the average size of a spliced alignment
$ 22752 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1516 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 56 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 06:08:13
-->
