<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:32:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545221" ref_strand="+" ref_description="SGN-E545221 [TUS-67-P9](-)">
      <seq>tcaaagtatttgcagatagcattcataatccaacaaaatacggttttaagatatcagagacggcttgttgtggaactggtccgtttcgagggattcttagttgtggagggaagaggcaggtaaaagagtatgagttatgtaagaatgtgaaagactacttgttttttgactctgttcatcccagtgaactggcctaccaacaatacgctgcattactgtggaatggaactacagatgtcgtagcacctcacaacctaaaatccttttttgaaagttcgaactccagatgtcctagcagcttacaattcctactatatatgaagaataaacaacaatgtgaaatatgatgttaaggagcttcatctctagtaatttttctgttcttgtgtaatcaaatattttggctgtacgctctcgtgcttaaataatctagaacttcttgactgccatgtgtagtaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7365" stop="6132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7065" g_stop="7024" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7023" i_stop="6850" i_length="174">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6849" g_stop="6437" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="455" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="491"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E545221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7065" e_stop="7024"/>
          <exon e_start="6849" e_stop="6437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTATTTGCAGATAGCATTCATAATCCAACAAAATACGGTATCTTCTATCTCTTCATCAAGTATTTTCATATTCATTCAAATTCTGTAGCAAAAAGTCCGCTAACAGAGGATGCAATGTTCATAACAAAATGAAACTATATATGTAGAGAAAACGCGTTAATGTTTTTAGTTGCTGTATACACAATGTTTCAATTTATTTTGTTTTGTTTAGGTTTTAAGATATCAGAGACGGCTTGTTGTGGAACTGGTCCGTTTCGAGGGATTCTTAGTTGTGGAGGGAAGAGGCAGGTAAAAGAGTATGAGTTATGTAAGAATGTGAAAGACTACTTGTTTTTTGACTCTGTTCATCCCAGTGAACTGGCCTACCAACAATACGCTGCATTACTGTGGAATGGAACTACAGATGTCGTAGCACCTCACAACCTAAAATCCTTTTTTGAAAGTTCGAACTCCAGATGTCCTAGCAGCTTACAATTCCTACTATATATGAAGAATAAACAACAATGTGAAATATGATGTTAAGGAGCTTCATCTCTAGTAATTTTTCTGTTCTTGTGTAATCAAATATTTTGGCTGTACGCTCTCGTGCTTAAATAATCTAGAACTTCTTGACTGCCATGTGTA</genome_strand>
        <mrna_strand>TCAAAGTATTTGCAGATAGCATTCATAATCCAACAAAATACG..............................................................................................................................................................................GTTTTAAGATATCAGAGACGGCTTGTTGTGGAACTGGTCCGTTTCGAGGGATTCTTAGTTGTGGAGGGAAGAGGCAGGTAAAAGAGTATGAGTTATGTAAGAATGTGAAAGACTACTTGTTTTTTGACTCTGTTCATCCCAGTGAACTGGCCTACCAACAATACGCTGCATTACTGTGGAATGGAACTACAGATGTCGTAGCACCTCACAACCTAAAATCCTTTTTTGAAAGTTCGAACTCCAGATGTCCTAGCAGCTTACAATTCCTACTATATATGAAGAATAAACAACAATGTGAAATATGATGTTAAGGAGCTTCATCTCTAGTAATTTTTCTGTTCTTGTGTAATCAAATATTTTGGCTGTACGCTCTCGTGCTTAAATAATCTAGAACTTCTTGACTGCCATGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545222" ref_strand="+" ref_description="SGN-E545222 [TUS-67-P9]">
      <seq>ctcaagtttgtgcatctttgttttggttacacactttgccacaccaattgtgtgccatgaaagagctgccctttttgtgttcggtgattcggttttcgattctggaaataataagtacatcaacgccactgctgacttgcagggaagtaattactttccttatggagaatcattctttaagcatcctactggcagggtgtctaatggacgccttattcctgattttatcgctgaatatgctaatttgccatttattccgccctactttgaaattgggaagaaacaattgattcatggggtaaactttgcatcagccggttctggttgtttggcggaaactagtggtgccattgttctaaaaactcagttgaagaattttgaaaatgtgatacaactgttgaagaggaaaatggggaaaacagagtcccataaaatcctggcaaatgcagtatatatttttagcactggtagcaatgacatgtttgcctctttagtaccaaattcgacttttccatattccgatagagaatatctacagatgattatgggcaacttgacttctgttttaaagggagtttataaaagaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8437" stop="7101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="7908" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7907" i_stop="7837" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7836" g_stop="7715" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="352" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7714" i_stop="7631" i_length="84">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7630" g_stop="7412" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="571" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7411" i_stop="7289" i_length="123">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7288" g_stop="7270" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="590" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E545222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="7908"/>
          <exon e_start="7836" e_stop="7715"/>
          <exon e_start="7630" e_stop="7412"/>
          <exon e_start="7288" e_stop="7270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGTTTGTGCATCTTTGTTTTGGTTACACACTTTGCCACACCAATTGTGTGCCATGAAAGAGCTGCCCTTTTTGTGTTCGGTGATTCGGTTTTCGATTCTGGAAATAATAAGTACATCAACGCCACTGCTGACTTGCAGGGAAGTAATTACTTTCCTTATGGAGAATCATTCTTTAAGCATCCTACTGGCAGGGTGTCTAATGGACGCCTTATTCCTGATTTTATCGGTAAATTTATTTGCTTTTCTTTGAAAATTAATCAAACTTATATGCAATTTGACTCAAACATAATTTTGCAGCTGAATATGCTAATTTGCCATTTATTCCGCCCTACTTTGAAATTGGGAAGAAACAATTGATTCATGGGGTAAACTTTGCATCAGCCGGTTCTGGTTGTTTGGCGGAAACTAGTGGTGCCATTGTAAGCGACAATATATGTATGTGTATATATATACATATATGTCCTTTATTGTTTGAATTTTAAATGTTGGTTTCCATTTGACAGGTTCTAAAAACTCAGTTGAAGAATTTTGAAAATGTGATACAACTGTTGAAGAGGAAAATGGGGAAAACAGAGTCCCATAAAATCCTGGCAAATGCAGTATATATTTTTAGCACTGGTAGCAATGACATGTTTGCCTCTTTAGTACCAAATTCGACTTTTCCATATTCCGATAGAGAATATCTACAGATGATTATGGGCAACTTGACTTCTGTTTTAAAGGTACTCTAATATTGATCTTTTCTATTGATGTTATAGACGGGTTTGATGGTATTGCAAGATAATATTTTGACAAAATTGAATTAATAAATGGACAAGTGACGTTTAAATGAATGAATGCAACAGGGAGTTTATAAAGGAGGAG</genome_strand>
        <mrna_strand>CTCAAGTTTGTGCATCTTTGTTTTGGTTACACACTTTGCCACACCAATTGTGTGCCATGAAAGAGCTGCCCTTTTTGTGTTCGGTGATTCGGTTTTCGATTCTGGAAATAATAAGTACATCAACGCCACTGCTGACTTGCAGGGAAGTAATTACTTTCCTTATGGAGAATCATTCTTTAAGCATCCTACTGGCAGGGTGTCTAATGGACGCCTTATTCCTGATTTTATCG.......................................................................CTGAATATGCTAATTTGCCATTTATTCCGCCCTACTTTGAAATTGGGAAGAAACAATTGATTCATGGGGTAAACTTTGCATCAGCCGGTTCTGGTTGTTTGGCGGAAACTAGTGGTGCCATT....................................................................................GTTCTAAAAACTCAGTTGAAGAATTTTGAAAATGTGATACAACTGTTGAAGAGGAAAATGGGGAAAACAGAGTCCCATAAAATCCTGGCAAATGCAGTATATATTTTTAGCACTGGTAGCAATGACATGTTTGCCTCTTTAGTACCAAATTCGACTTTTCCATATTCCGATAGAGAATATCTACAGATGATTATGGGCAACTTGACTTCTGTTTTAAAG...........................................................................................................................GGAGTTTATAAAAGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310208" ref_strand="+" ref_description="SGN-E310208 [cLEZ-8-H20]">
      <seq>tcaagtttgtgcatctttgttttggttacacactttgccacaccaattgtgtgccatgaaagagctgccctttttgtgttcggtgattcggttttcgattctggaaataataagtacatcaacgccactgctgacttgcagggaagtaattactttccttatggagaatcattctttaagcatcctactggcagggtgtctaatggacgccttattcctgattttatcgctgaatatgctaatttgccatttattccgccctactttgaaattgggaagaaacaattgattcatggggtaaactttgcatcagccggttctggttgtttggcggaaactagtggtgccattgttctaaaaactcagttgaagaattttgaaaatgtgatacaactgttgaagaggaaaatggggaaaacagagtcccataaaatcctggcaaatgcagtatatatttttagcactggtagcaatgacatgtttgcctctttagtaccaaattcgacttttccatattccgatagagaatatctacagatgattatgggcaacttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8436" stop="7125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8136" g_stop="7908" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7907" i_stop="7837" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7836" g_stop="7715" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="351" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7714" i_stop="7631" i_length="84">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7630" g_stop="7425" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="557" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E310208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8136" e_stop="7908"/>
          <exon e_start="7836" e_stop="7715"/>
          <exon e_start="7630" e_stop="7425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTTGTGCATCTTTGTTTTGGTTACACACTTTGCCACACCAATTGTGTGCCATGAAAGAGCTGCCCTTTTTGTGTTCGGTGATTCGGTTTTCGATTCTGGAAATAATAAGTACATCAACGCCACTGCTGACTTGCAGGGAAGTAATTACTTTCCTTATGGAGAATCATTCTTTAAGCATCCTACTGGCAGGGTGTCTAATGGACGCCTTATTCCTGATTTTATCGGTAAATTTATTTGCTTTTCTTTGAAAATTAATCAAACTTATATGCAATTTGACTCAAACATAATTTTGCAGCTGAATATGCTAATTTGCCATTTATTCCGCCCTACTTTGAAATTGGGAAGAAACAATTGATTCATGGGGTAAACTTTGCATCAGCCGGTTCTGGTTGTTTGGCGGAAACTAGTGGTGCCATTGTAAGCGACAATATATGTATGTGTATATATATACATATATGTCCTTTATTGTTTGAATTTTAAATGTTGGTTTCCATTTGACAGGTTCTAAAAACTCAGTTGAAGAATTTTGAAAATGTGATACAACTGTTGAAGAGGAAAATGGGGAAAACAGAGTCCCATAAAATCCTGGCAAATGCAGTATATATTTTTAGCACTGGTAGCAATGACATGTTTGCCTCTTTAGTACCAAATTCGACTTTTCCATATTCCGATAGAGAATATCTACAGATGATTATGGGCAACTTGAC</genome_strand>
        <mrna_strand>TCAAGTTTGTGCATCTTTGTTTTGGTTACACACTTTGCCACACCAATTGTGTGCCATGAAAGAGCTGCCCTTTTTGTGTTCGGTGATTCGGTTTTCGATTCTGGAAATAATAAGTACATCAACGCCACTGCTGACTTGCAGGGAAGTAATTACTTTCCTTATGGAGAATCATTCTTTAAGCATCCTACTGGCAGGGTGTCTAATGGACGCCTTATTCCTGATTTTATCG.......................................................................CTGAATATGCTAATTTGCCATTTATTCCGCCCTACTTTGAAATTGGGAAGAAACAATTGATTCATGGGGTAAACTTTGCATCAGCCGGTTCTGGTTGTTTGGCGGAAACTAGTGGTGCCATT....................................................................................GTTCTAAAAACTCAGTTGAAGAATTTTGAAAATGTGATACAACTGTTGAAGAGGAAAATGGGGAAAACAGAGTCCCATAAAATCCTGGCAAATGCAGTATATATTTTTAGCACTGGTAGCAATGACATGTTTGCCTCTTTAGTACCAAATTCGACTTTTCCATATTCCGATAGAGAATATCTACAGATGATTATGGGCAACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537783" ref_strand="+" ref_description="SGN-E537783 [TUS-56-J2](-)">
      <seq>ttaaaaaactggggaggcaattgcctggttttaagtatacaatattcaacttcttcaaagtatttgcagatagcattaataatccaacaaaatatggtatcttctatctcattgaattcaaaatcaagtatctttatgttcgattatatattgtgcagtgttgatttatgtaagaatagctgttttaccaagagtttactaatgtacaataagtatcaacaggaattggtagtaagtaatcttttatctttaaccaaatttctcggctcgagaaatggtatgaaatcgcgtttgttaaggagcgtatgtaggacttcctggttcaaatccggatttagtctccccatgagaaaccttcaataaagtaaaagaaaaaataggaattgatcatagaaagatgaagcataaatcatatgtaggtttattttttttctctattcacagtacaaactctgtagcagaaatttgatggctctgctaacaaagtagaatgttgatgcaataatcataacaaaatgaaatcacacaaaccatattagagatgaataaagtcaaatgtttgattgttaaaaaaaaaaaaaaaaaaaacatttttggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14364" stop="13187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14064" g_stop="13463" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E537783" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14064" e_stop="13463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGTATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACAGGAATTGGTAGTAAGTAATCTTTTATCTTTAACCAAATTTCTCGGCTCGAGAAATGGTATGAAATCGCGTTTGTTAAGGAGCGTATGTAGGACTTCCTGGTTCAAATCCGGATTTAGTCTCCCCATGAGAAACCTTCAATAAAGTAAAAGAAAAAATAGGAATTGATCATAGAAAGATGAAGCATAAATCATATGTAGGTTTATTTTTTTTCTCTATTCACAGTACAAACTCTGTAGCAGAAATTTGATGGCTCTGCTAACAAAGTAGAATGTTGATGCAATAATCATAACAAAATGAAATCACACAAACCATATTAGAGATGAATAAAGTCAAATGTTTGATTGTTATATAAAAAATGTTCATTTTAATTTACTTAAAAG</genome_strand>
        <mrna_strand>TTAAAAAACTGGGGAGGCAATTGCCTGGTTTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGTATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACAGGAATTGGTAGTAAGTAATCTTTTATCTTTAACCAAATTTCTCGGCTCGAGAAATGGTATGAAATCGCGTTTGTTAAGGAGCGTATGTAGGACTTCCTGGTTCAAATCCGGATTTAGTCTCCCCATGAGAAACCTTCAATAAAGTAAAAGAAAAAATAGGAATTGATCATAGAAAGATGAAGCATAAATCATATGTAGGTTTATTTTTTTTCTCTATTCACAGTACAAACTCTGTAGCAGAAATTTGATGGCTCTGCTAACAAAGTAGAATGTTGATGCAATAATCATAACAAAATGAAATCACACAAACCATATTAGAGATGAATAAAGTCAAATGTTTGATTGTTAAAAAAAAAAAAAAAAAAAACATTTTTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537786" ref_strand="+" ref_description="SGN-E537786 [TUS-56-J2]">
      <seq>gaaaatgggtgaaacagagtcgaaacagatcctctccaacgctgtatatattttcagccctgccaataatgatttccttttccctttcttagcaaatttgacttctccatattccgatacagaatatcaacagatggttatgggaaatttgacttctgttttgaagggaatttacaaggaaggagggagaaagtttgtgatgtttaatgtggctccattaggatgtgttccttctatgagggctctcaaccttcaaaaaggagttacgaatgggagttgtatggaggaagcaacagacaaagcgaagacgtttaattcagctctcccaagaatgtttaaaaaactagagaagcaattgcctggatttaagtatacaatattcaacttcttcaaagtatttgcagatagcattaataatccaacaaaatatggtatcttctatctcattgaattcaaaatcaagtatctttatgttcgattatatattgtgcagtgttgatttatgtaagaatagctgttttaccaagagtttactaatgtacaataagtatcaacaggaattggtagtaagtaatcttttatctttaaccaaatttctcggctcgagaaatggtatgaaatcgcgtttgttaaggagcgtatgtaggacttcctggttcaaatccggatttagtctccccatgagaaaccttcaataaagtaaaagaaaaaataggaattgatcatagaaagatgaagcataaatcatatgtaggtttattttttttctctatcacagtacaaactctgtagcagaaatttgatggctctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14843" stop="13285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14543" g_stop="14378" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14377" i_stop="14234" i_length="144">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14233" g_stop="13585" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="814" r_length="648" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E537786" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14543" e_stop="14378"/>
          <exon e_start="14233" e_stop="13585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGGTGAAACAGAGTCGAAACAGATCCTCTCCAACGCTGTATATATTTTCAGCCCTGCCAATAATGATTTCCTTTTCCCTTTCTTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCAACAGATGGTTATGGGAAATTTGACTTCTGTTTTGAAGGTAATTAATATTTGATCTTTTCGATTTAATTTATTTACGAGTGAGTAGTAGTTTTTATCTATTCAAGAAACAAATCAGATATTGTTACTTGCATGTTCTACGTGAAGTTAGTCCTAGGACTAATTCGTTGTACTTTGTTTACAGGGAATTTACAAGGAAGGAGGGAGAAAGTTTGTGATGTTTAATGTGGCTCCATTAGGATGTGTTCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTACGAATGGGAGTTGTATGGAGGAAGCAACAGACAAAGCGAAGACGTTTAATTCAGCTCTCCCAAGAATGTTTAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGTATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACAGGAATTGGTAGTAAGTAATCTTTTATCTTTAACCAAATTTCTCGGCTCGAGAAATGGTATGAAATCGCGTTTGTTAAGGAGCGTATGTAGGACTTCCTGGTTCAAATCCGGATTTAGTCTCCCCATGAGAAACCTTCAATAAAGTAAAAGAAAAAATAGGAATTGATCATAGAAAGATGAAGCATAAATCATATGTAGGTTTATTTTTTTTCTCTATTCACAGTACAAACTCTGTAGCAGAAATTTGATGGCTCTGCTA</genome_strand>
        <mrna_strand>GAAAATGGGTGAAACAGAGTCGAAACAGATCCTCTCCAACGCTGTATATATTTTCAGCCCTGCCAATAATGATTTCCTTTTCCCTTTCTTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCAACAGATGGTTATGGGAAATTTGACTTCTGTTTTGAAG................................................................................................................................................GGAATTTACAAGGAAGGAGGGAGAAAGTTTGTGATGTTTAATGTGGCTCCATTAGGATGTGTTCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTACGAATGGGAGTTGTATGGAGGAAGCAACAGACAAAGCGAAGACGTTTAATTCAGCTCTCCCAAGAATGTTTAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGTATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACAGGAATTGGTAGTAAGTAATCTTTTATCTTTAACCAAATTTCTCGGCTCGAGAAATGGTATGAAATCGCGTTTGTTAAGGAGCGTATGTAGGACTTCCTGGTTCAAATCCGGATTTAGTCTCCCCATGAGAAACCTTCAATAAAGTAAAAGAAAAAATAGGAATTGATCATAGAAAGATGAAGCATAAATCATATGTAGGTTTATTTTTTTTCTCTA-TCACAGTACAAACTCTGTAGCAGAAATTTGATGGCTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267479" ref_strand="+" ref_description="SGN-E267479 [cLEI-8-B6]">
      <seq>aaaatgggtgaaacagagtcgaaacagatcctctccaacgctgtatatattttcagccctgccaataatgatttccttttccctttcttagcaaatttgacttctccatattccgatacagaatatcaacagatggttatgggaaatttgacttctgttttgaagggaatttacaaggaaggagggagaaagtttgtgatgtttaatgtggctccattaggatgtgttccttctatgagggctctcaaccttcaaaaaggagttacgaatgggagttgtatggaggaagcaacagacaaagcgaagacgtttaattcagctctcccaagaatgtttaaaaaactagagaagcaattgcctggatttaagtatacaatattcaacttcttcaaagtatttgcagatagcattaataatccaacaaaatatggcatcttctatctcattgaattcaaaatcaagtatctttatgttcgattatatattgtgcagtgttgatttatgtaagaatagctgttttaccaagagtttactaatgtacaataagtatcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14842" stop="13544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14542" g_stop="14378" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14377" i_stop="14234" i_length="144">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14233" g_stop="13844" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="555" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E267479" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14542" e_stop="14378"/>
          <exon e_start="14233" e_stop="13844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGTGAAACAGAGTCGAAACAGATCCTCTCCAACGCTGTATATATTTTCAGCCCTGCCAATAATGATTTCCTTTTCCCTTTCTTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCAACAGATGGTTATGGGAAATTTGACTTCTGTTTTGAAGGTAATTAATATTTGATCTTTTCGATTTAATTTATTTACGAGTGAGTAGTAGTTTTTATCTATTCAAGAAACAAATCAGATATTGTTACTTGCATGTTCTACGTGAAGTTAGTCCTAGGACTAATTCGTTGTACTTTGTTTACAGGGAATTTACAAGGAAGGAGGGAGAAAGTTTGTGATGTTTAATGTGGCTCCATTAGGATGTGTTCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTACGAATGGGAGTTGTATGGAGGAAGCAACAGACAAAGCGAAGACGTTTAATTCAGCTCTCCCAAGAATGTTTAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGTATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACA</genome_strand>
        <mrna_strand>AAAATGGGTGAAACAGAGTCGAAACAGATCCTCTCCAACGCTGTATATATTTTCAGCCCTGCCAATAATGATTTCCTTTTCCCTTTCTTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCAACAGATGGTTATGGGAAATTTGACTTCTGTTTTGAAG................................................................................................................................................GGAATTTACAAGGAAGGAGGGAGAAAGTTTGTGATGTTTAATGTGGCTCCATTAGGATGTGTTCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTACGAATGGGAGTTGTATGGAGGAAGCAACAGACAAAGCGAAGACGTTTAATTCAGCTCTCCCAAGAATGTTTAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGCATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284128" ref_strand="+" ref_description="SGN-E284128 [cLER-13-D2]">
      <seq>gattttggaaccttgagtatgggtaaaaagactgtttctagggtggttggtattggtacaatttgtttggaaactagtattggaactaaactagttttgaacaatgtgaaacatgctcttgatgttcgtctgcacctaatttctgttggtgttttagatgatgaaggatatgttagtaccaacggtgatggaaaatggaagctcattaagggttccttggttgtggctcgtggtaacaaacgtcgtggtcaatactggactacggcctctgcttgttgatatggtgaatgcggttgaaagcgatagctcttcaacattatggctcctcgttggccngtggtttttttccttattcagaagggcttccacgtaaaattattggtgtcgttattttctcattttatttccattacatttaccatatatacttttatgcttgtccgtgttttcccaataggaatgacttgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21285" stop="17012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20985" g_stop="20663" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20662" i_stop="17461" i_length="3202">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17460" g_stop="17323" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="460" r_length="139" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E284128" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20985" e_stop="20663"/>
          <exon e_start="17460" e_stop="17323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATAAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTTCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCTATACTGGACTACAGACTCTGCTTGTGTTGATATGGTGAATGCGGTTGAGAGCAATAGCTCTTCAACATTATGGCACAAGAGGCTTAGCCACATTAGCGAGAAAGGACTTAATGTTCTAGCCAAGAAGAAATTATGATCAAATTTCCAAAGTGCTAAATTAGAAAATTGTGAGCACTGCTTGGCTGGTAAACAAAATAGAGTTTCCTTTAAGTCCTACCCTCCTTCGAGAAAGACAGAGTTGCTTGAGTTAGTGCACTCTGATTTATGTGGTCCAATGAAGACAAAGACATTGGGTGGTGCACTTTACTTTGTCACTTTCATTGATGATTGCTCGAGAAAACTTTGGGTCTATGTCTTGAAGACTAAAGACCAAGTGTTAGGTGTCTTTAAGCAGTTTCAGGCTTCAGTTGAAAGAGAAACTGGAAAGAAATTGAAATGTATTTGTACTGATAATGGTGGTGAATATTGTGGACCATTTGACGAATACTGCAAGCATCAAGGTATTAGACACCAGAAGACTCCTCCCAAGACTCCTAAGCTTAATGGTTTGGCTGAGAGTATGAACAGGACCTTGATGGAAAGAGTTAGATGTTTGCTTTCTGAAGCAAAATTGCCGAACTCATTTTGGGGTGAGGCTTTATTGACCACTGCACATGTTATTAATCTATCTCATGTTGTTGCTTTGCAAAGTGATGTAGCAAATAGTGTTTGGTATGGAAAGGATGTATCCTATGACCATTTGAGAGTATTTGGTTGCAAAGCTTTTGTACATGTGTCGAAAGATGAGAGGTCAAAGTTAGATACTAAGACAAGGCAGTGCATCTTCATTGAATATGGCCTAGATGAATTTGGTTACAGGCTATATGATCCAATTGAAAAGAAACTTGTGAGAAGCCGTGATATTATTTTCATGGAGAATCAAACAATTGAAGATATTGACAAAGCAGAGAAGGTAGAATCTTCAAGTTTTGATGGTATAGTTCATCATGATGAAGTTCCTCACACAAGTGTGCATGATGTTGTTGGGTTTGATAATCATGGTGATGCCCAAAATCATGTATTGAATCAACATGTTGATGTTGATAATAACAATGATATTATTATTGATAATCCTGTTGCTCATGAAGTTGTGAACGAATTAAATATTCCGTTTCGGAGGTCCACAAGATAGTGGTTTCCTTCCTCCCGTTATTCACCCAATGAGTATGTGTTACTCACTGACGGGGGAGAACCTGAATGTTATGAGGAGGCCATGGAAGATGAGCACAAGAATCAATGGATTGAAGTCATGCAAGATGAGATGAAATTTTTGCATGAGAACCACACTTATGAGTTGGTAAAATTGCCCAAGGGCATGAGAGCTTTGAAGAACAAGTGGGTGTTCAAAGTTAAAGTTGAAGAACACAACTTGAAGCCCAGGTATAAAGCTAGATTGGTTGTTAAGGGATTCGGTCAAAGGAAAGGTATTGACTTTGATGAAATATTTTCTCCTGTTGTGAAAATGTCCTCGATTCGCACAGTTCTAGGTTTGGCTGCTAGTCTTAATTTAGAGATTGAGCAGATGGATGTGAAGACGGCTTTCCTTCACGGTGACCTAGAAGAAGAGATTTATATGGAACAACCTGAGGGCTTCAAAGTAGATGGTAAAGAACATTTTGTATGCAAACTCAAAAAGAGTCTCTATGGCCTAAAACAAGCTCCTAGACAGTGGTACAAAAAGTTTGAATATGTTATGGGGGAGCAAGTCTATAAGAAGACTTCTTCAGATCATTGCGTATTTGTACAAAAATTTTCTGACAATGATTTTATCATCCTTTTGTTGTATGTGGATGATATGTTGATTGTGGGCAAAAATACTTCCAAGATTGACGAGCTAAAGAAAGAGTTGTGTAAGTCTTTTTCTATGAAAGATTTGGGTCATGCCAAACAAATTTTGGGCATGAGAATTACTCGTCTTAGAGATAAAAGGAAGATTTATTTGTCACGGAGAAGTACATTGAACGTGTACTGGAGCGCTTCAATATGAAGAATGCTAAGCCTGTTAGTATACCTCTTGCTGGTCATATGAAGTTGAGCAAGAAGATGTGTCCTACAGCTAGGGAGGAAAAAGAGAATATGGCCAAAGTTCCATATTCCTCCGTCATCGGAAGTCTAATGTATGCAATGGTGTGCACTAGACCTGATATTGCTCATGCAGTTGGTGTTGTCAGTAAATTTCTCGAAAATCCGGGAAAAGAGCATTGGGAAGCTGTGAAATGGATACTCAGGTATCTTAGAGGTAGCTCAGATGAATGCTTGTGTTTTGGAGCATCAAATCCAATCTTGAAAGACTATACAGATTCTGATATGGCAGGTGACCTTGATAACAGAAAATCCACTACTGGATATTTGTTTACTTTTTCAGGGGGAGCTATATCATGGCAGTCAAAGTTGTAGAAGTGTGTTGCACTATCTACAACTGAAGCTGAGTATATTGCGGCTACTGAACCCGGCAAGGAGATGATATGGCTAAAGCGATTTCTTCAAGAGCTTGGTTTGAATCAGATGGAGTATATTGTCTATTGTGACAGTCAGAGTGCAATAGACTTGAGCAAGAACTCCATGTACCATGCAAGAACAAAACACATTGACGTCAGATATCATTGGATTCGTGAGAAAGTGGAGAATGAATCATTTCACGTCAAAAAGATTCACACAAGTGAAAATCCTGCAGATATGCTGACCAAGATGATACCAAAAGACAAGTTCGAGTTATGCAAAGAACTTGTGGGTATGAGCTCTTTCTAAAGAAGTTGAAGATACATTCTTCTAGTAAATGGGACTGGAGGGAGAGATTTGTTGAATCCATCCCATTGTTTTAGTCAACTTTAGCTATTCAATTGGTACAAGCAATTGTTAAAAAGGAATAGTAATTGGAGTTGAAAAGAAAAGATTTGGTAGTTGGCAAATTGGTAAGATTTGCAACCATTTTTGACTTTGCTATGTTTACATATGTCATTAGTGACATAGGTATGGTTTTATCCTTCTATAAATAGAGAATTCTTGCTCATTTGTAGAATACACCAAGTTAGAGAGAAAAACCATTTTGAGAGCAAAGTGAAGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAATGTAAAATTCCTTACTATAGTAATATTAGTTGCTCCTC-TTGGCCCGTGATTTTTTCCCTTATTCAGAAGGGTTTTCACGTAAAATTCTTGGCGTCGTTATTTTCCCATTTTATTTCCATTACATTTACCATATATACTTTTGTGCTTGTCCGTATTTTCCCAACAAGAA</genome_strand>
        <mrna_strand>GATTTTGGAACCTTGAGTATGGGTAAAAAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTATTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCTTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCAATACTGGACTACGGCCTCTGC-T-TGTTGATATGGTGAATGCGGTTGAAAGCGATAGCTCTTCAACATTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGTTGGCCNGTGGTTTTTTTCCTTATTCAGAAGGGCTTCCACGTAAAATTATTGGTGTCGTTATTTTCTCATTTTATTTCCATTACATTTACCATATATACTTTTATGCTTGTCCGTGTTTTCCCAATAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17959" stop="17153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17659" g_stop="17453" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17659" e_stop="17453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAAGTATTCCATAGACTATATAAG-AAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAATGTAAAATTCCTTACTATAGTAATATTAGTTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22675" stop="21869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22375" g_stop="22169" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22375" e_stop="22169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAAGTATTCCATAGACTATATAAG-AAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAATGTAAAATTCCTTACTATAGTAATATTAGTTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462104" ref_strand="+" ref_description="SGN-E462104 [cPRO-10-J9]">
      <seq>gtaaactttgcatcaggcagttctggtattttggctgaaactagtcgtgccattattctaaaaagtcagttgaaattattccaaaatgtgggaaaactgttgcagaagaaagtgggtgaaacagagtcgaaacagatcctctccaatgctgtatatatttttagcactgccaataatgatttccttttccctttattagcaaatttgacttctccatattccgatacagaatatctacacatggttatgggaaatttgacttctgttttaaagggagtttataaacaaggagggagaaagtttgtgatgtttaatttgggtccattaggttgtctcccttctatgagggctctcaaccttcaaaaaggagttaaaaatggaagttgcatggagaaggccacaaacaaggcgaaaatgtttaattcagctcttccaaaaatgctcaaaaaactagagaagcaattgcctggatttaagtatacaatattcaacttcttcaaagtatttgcagatagcattcataatccaacaaaatacggttttaagatatcagagacagcttgttgtggaacgggtccatttcgagggattcttagttgtggagggaagaagcgggtaaaagagtacaagttatgtaacaatgtgaaagattacttgtttttcgactcttttcatcccactgagctggcctaccctacatacacaaaactactgtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24887" stop="1672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24587" g_stop="24534" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24533" i_stop="24417" i_length="117">
            <donor d_prob="1.000" d_score="0.80"/>
            <acceptor a_prob="0.374" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24416" g_stop="24199" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="273" r_length="219" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24198" i_stop="24102" i_length="97">
            <donor d_prob="0.985" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24101" g_stop="23837" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="538" r_length="265" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23836" i_stop="23756" i_length="81">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23755" g_stop="23575" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="719" r_length="181" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E462104" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24587" e_stop="24534"/>
          <exon e_start="24416" e_stop="24199"/>
          <exon e_start="24101" e_stop="23837"/>
          <exon e_start="23755" e_stop="23575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTTGCATCAGGTGGTTCGGGTTGTTTGGCTGAAACCGCTCGTGGCTTTGTAAGTCACAATATTTCCTTTTTAACTTATTCTCTTACTTTTATGTAATTATTGTTTCAATTTGATAGTTAGATCAACTTTTTTATGAAATGTTTGTTTCCATTTGACAGGTTATAGA-TCTTCAAACTCAGTTGAAATATTTCCAAAATGTGGGAAAACTGTTGCAGAAGAAAGTGGGTGAAACAGAGTCGAAACAGATCCTCTCCAATGCTGTATATATTTTTAGCACTGTCAGTAATGATATGTTTGCCCCTTTATTTGCAAATTCGTCTTTTCCATATTCCGATACAGAATATTTACAGATGATTATGGGCAACTTAACTTCTGTTTTAAAGGTAATATTGATCTTTTCTATTTCTTTTGATTTAATTTACTCGTTGTAGTTTTTATCAAATGAACAAGTTAGGGTAACTATTTGTACTCTGTTTACAGGGAATTTACAAAGAAGGAGGGAGAAAGTTTGTGATGTTTAATTTGGCTCCATTAGGTTGTCTCCCTTTAATGAGAGCTCTCAACCTTCAAATTGGAGTTACAAATGGAAGTTGCATGGAGAAGGCCACAAACTTGGCCAAAATGTTTAATTCAGCTCTCCCAACAATGTTCAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTAATTGCAGATAGCATTCATAATCCAACAAAATACGGTATCTTCGAACTCAAAATCAAGTACTTTTATGTTTGATTATATATTATGCACCAATGATTTTGTTCTTCTTTTTTTTTAGGTTTGAAGATATCAGAGACGGCTTGTTGTGGAACGGGTTCATTTCGAGGGATTCTAAGTTGTGGAGGGAAGAGGCAGGTAAAAGAGTACGAATTATGTAAGAATGTGAAAGATTACTTGTTTTTCGACTCTGTTCATCCCAGTGAGCAGGCCTACCTAAAATACACGGAATTATTATGGAA</genome_strand>
        <mrna_strand>GTAAACTTTGCATCAGGCAGTTCTGGTATTTTGGCTGAAACTAGTCGTGCCATT.....................................................................................................................ATTCTAAAAAGTCAGTTGAAATTATTCCAAAATGTGGGAAAACTGTTGCAGAAGAAAGTGGGTGAAACAGAGTCGAAACAGATCCTCTCCAATGCTGTATATATTTTTAGCACTGCCAATAATGATTTCCTTTTCCCTTTATTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCTACACATGGTTATGGGAAATTTGACTTCTGTTTTAAAG.................................................................................................GGAGTTTATAAACAAGGAGGGAGAAAGTTTGTGATGTTTAATTTGGGTCCATTAGGTTGTCTCCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTAAAAATGGAAGTTGCATGGAGAAGGCCACAAACAAGGCGAAAATGTTTAATTCAGCTCTTCCAAAAATGCTCAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTCATAATCCAACAAAATACG.................................................................................GTTTTAAGATATCAGAGACAGCTTGTTGTGGAACGGGTCCATTTCGAGGGATTCTTAGTTGTGGAGGGAAGAAGCGGGTAAAAGAGTACAAGTTATGTAACAATGTGAAAGATTACTTGTTTTTCGACTCTTTTCATCCCACTGAGCTGGCCTACCCTACATACACAAAACTACTGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462116" ref_strand="+" ref_description="SGN-E462116 [cPRO-10-N7]">
      <seq>gtaaactttgcatcaggcagttctggtattttggctgaaactagtcgtgccattattctaaaaagtcagttgaaattattccaaaatgtgggaaaactgttgcagaagaaagtgggtgaaacagagtcgaaacagatcctctccaatgctgtatatatttttagcactgccaataatgatttccttttccctttattagcaaatttgacttctccatattccgatacagaatatctacacatggttatgggaaatttgacttctgttttaaagggagtttataaacaaggagggagaaagtttgtgatgtttaatttgggtccattaggttgtctcccttctatgagggctctcaaccttcaaaaaggagttaaaaatggaagttgcatggagaaggccacaaacaaggcgaaaatgtttaattcagctcttccaaaaatgctcaaaaaactagagaagcaattgcctggatttaagtatacaatattcaacttcttcaaagtatttgcagatagcattcataatccaacaaaatacggttttaagatatcagagacagcttgttgtggaacgggtccatttcgagggattcttagttgtggaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24887" stop="6481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24587" g_stop="24534" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24533" i_stop="24417" i_length="117">
            <donor d_prob="1.000" d_score="0.80"/>
            <acceptor a_prob="0.374" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24416" g_stop="24199" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="273" r_length="219" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24198" i_stop="24102" i_length="97">
            <donor d_prob="0.985" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24101" g_stop="23837" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="538" r_length="265" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23836" i_stop="23756" i_length="81">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23755" g_stop="23687" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="607" r_length="69" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E462116" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24587" e_stop="24534"/>
          <exon e_start="24416" e_stop="24199"/>
          <exon e_start="24101" e_stop="23837"/>
          <exon e_start="23755" e_stop="23687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTTGCATCAGGTGGTTCGGGTTGTTTGGCTGAAACCGCTCGTGGCTTTGTAAGTCACAATATTTCCTTTTTAACTTATTCTCTTACTTTTATGTAATTATTGTTTCAATTTGATAGTTAGATCAACTTTTTTATGAAATGTTTGTTTCCATTTGACAGGTTATAGA-TCTTCAAACTCAGTTGAAATATTTCCAAAATGTGGGAAAACTGTTGCAGAAGAAAGTGGGTGAAACAGAGTCGAAACAGATCCTCTCCAATGCTGTATATATTTTTAGCACTGTCAGTAATGATATGTTTGCCCCTTTATTTGCAAATTCGTCTTTTCCATATTCCGATACAGAATATTTACAGATGATTATGGGCAACTTAACTTCTGTTTTAAAGGTAATATTGATCTTTTCTATTTCTTTTGATTTAATTTACTCGTTGTAGTTTTTATCAAATGAACAAGTTAGGGTAACTATTTGTACTCTGTTTACAGGGAATTTACAAAGAAGGAGGGAGAAAGTTTGTGATGTTTAATTTGGCTCCATTAGGTTGTCTCCCTTTAATGAGAGCTCTCAACCTTCAAATTGGAGTTACAAATGGAAGTTGCATGGAGAAGGCCACAAACTTGGCCAAAATGTTTAATTCAGCTCTCCCAACAATGTTCAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTAATTGCAGATAGCATTCATAATCCAACAAAATACGGTATCTTCGAACTCAAAATCAAGTACTTTTATGTTTGATTATATATTATGCACCAATGATTTTGTTCTTCTTTTTTTTTAGGTTTGAAGATATCAGAGACGGCTTGTTGTGGAACGGGTTCATTTCGAGGGATTCTAAGTTGTGGAGGGA</genome_strand>
        <mrna_strand>GTAAACTTTGCATCAGGCAGTTCTGGTATTTTGGCTGAAACTAGTCGTGCCATT.....................................................................................................................ATTCTAAAAAGTCAGTTGAAATTATTCCAAAATGTGGGAAAACTGTTGCAGAAGAAAGTGGGTGAAACAGAGTCGAAACAGATCCTCTCCAATGCTGTATATATTTTTAGCACTGCCAATAATGATTTCCTTTTCCCTTTATTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCTACACATGGTTATGGGAAATTTGACTTCTGTTTTAAAG.................................................................................................GGAGTTTATAAACAAGGAGGGAGAAAGTTTGTGATGTTTAATTTGGGTCCATTAGGTTGTCTCCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTAAAAATGGAAGTTGCATGGAGAAGGCCACAAACAAGGCGAAAATGTTTAATTCAGCTCTTCCAAAAATGCTCAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTCATAATCCAACAAAATACG.................................................................................GTTTTAAGATATCAGAGACAGCTTGTTGTGGAACGGGTCCATTTCGAGGGATTCTTAGTTGTGGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316438" ref_strand="+" ref_description="SGN-E316438 [cTOA-25-D12]">
      <seq>tggaccccattctttgtgtgtgtgggtaacgagctgtcatctccaactcctcggcagactgttctgttcacttcttcttatacatataaaccctcacttctaccaccattttcaccattaccaaccaattcttctatacattaataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40442" stop="41701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40742" g_stop="41401" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E316438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40742" e_stop="41401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCCCATTCTTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCG</genome_strand>
        <mrna_strand>TGGACCCCATTCTTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302290" ref_strand="+" ref_description="SGN-E302290 [cLEW-19-P21]">
      <seq>tttgtgtgtgtgggtaacgagctgtcatctccaactcctcggcagactgttctgttcacttcttcttatacatataaaccctcacttctaccaccattttcaccattaccaaccaattcttctatacattaataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40454" stop="41553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40754" g_stop="41253" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E302290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40754" e_stop="41253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACT</genome_strand>
        <mrna_strand>TTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730909" ref_strand="+" ref_description="SGN-E730909 [LA25CC10]">
      <seq>ccctttaggctcacttctaccaccattttcaccattaccaaccccttcttctatacattaataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgctcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgagaagaaagttgaaacagagaaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggcgccggcagcagagacaccatctgagccatcggagacagagaaggtggaggcagtcgaggaaatcaaggaaaccattgttgaagtaccggctgcggttgctgtgatggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40534" stop="41887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40825" g_stop="41587" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E730909" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40825" e_stop="41587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCT</genome_strand>
        <mrna_strand>CCCTTTAGGCTCACTTCTACCACCATTTTCACCATTACCAACCCCTTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGCTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727029" ref_strand="+" ref_description="SGN-E727029 [LA13CB03]">
      <seq>aattcttctatacattaataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgagaagaaagttgaaacagagaaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggcgccggcagcagagacaccatctgagccatcggagacagagaaggtggaggcagtcgaggaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttatatatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40568" stop="43502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40868" g_stop="41536" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41537" i_stop="42905" i_length="1369">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42906" g_stop="43202" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="965" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E727029" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>966</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40868" e_stop="41536"/>
          <exon e_start="42906" e_stop="43202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTACCCTTAAAGCTGTTTTTATATTGTTATATGATGTTGGTATTTAGATATTAACTGGATTTTGATGTTATGGTGTGAAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGG</genome_strand>
        <mrna_strand>AATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTA-TATATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297349" ref_strand="+" ref_description="SGN-E297349 [cLEW-10-K15]">
      <seq>ttctatacattaataaaaatccattctttaagcctttttcgtgtctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctgcttctccgccgccggcaaaggaagaggatgagaagaaagcatccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgagaagaaagttgaaacagagaaattggagaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40573" stop="41736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40873" g_stop="41436" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E297349" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40873" e_stop="41436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACA</genome_strand>
        <mrna_strand>TTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTGTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTGCTTCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCATCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265063" ref_strand="+" ref_description="SGN-E265063 [cLEI-2-O16]">
      <seq>ttctatacattaataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgagaagaaagttgaaacagagaaattggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40573" stop="41732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40873" g_stop="41432" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E265063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40873" e_stop="41432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAA</genome_strand>
        <mrna_strand>TTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318224" ref_strand="+" ref_description="SGN-E318224 [cTOA-29-P6]">
      <seq>ttctatacattaataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgttcccgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40573" stop="41614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40873" g_stop="41314" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E318224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40873" e_stop="41314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCG</genome_strand>
        <mrna_strand>TTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730166" ref_strand="+" ref_description="SGN-E730166 [LA23BA12]">
      <seq>cgcattaataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgagaagaaagttgaaacagagaaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggcgccggcagcagagacaccatctgagccatcggagacagagaaggtggaggcagtcgaggaaatcaaggaaaccattgttgaagtaccggctgcggttgctgtgatggcctccacggaggagccaccggctgcagaggcagaggaaccgaaaacagagcaaaccccaccagcagcaccagaagaagtatccatatgggggaatacccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40580" stop="41987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40878" g_stop="41687" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E730166" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40878" e_stop="41687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATAT-GGGGAATACCCCTTTT</genome_strand>
        <mrna_strand>CGCATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGGAATACCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311146" ref_strand="+" ref_description="SGN-E311146 [cLEZ-16-B20]">
      <seq>ataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgagaagaaagttgaaacagagaaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggcgccggcagcagagacaccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40585" stop="41800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40885" g_stop="41500" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E311146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40885" e_stop="41500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTG</genome_strand>
        <mrna_strand>ATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485157" ref_strand="+" ref_description="SGN-E485157 [cSTE-16-D22]">
      <seq>ttctaaacctccaatcacttaaaaatccattctttaagcctttttcatttctggatatctgaaatttgatcggaaaatcaagaaatggctgaggaaaccaagaaaatagctgaagaaacaacccctgatgttacagtgagggagacacctcaacctgagccggaaaatgtgccggagtcaccggagaaagttgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttaccgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggcggaattcaaacagatggttcaagaagctcttaacaagcacgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagaagccgtttccgccgatgcccctgctgaggcaccggcggcgacacctgagccagtgatagaggcagaatcggaaccggtggccgagaagaaagttgaaacagaggaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggtaccggcagcagagacaccatctgagccatcagcagcagagaaggtggaggcagtcgaagaaatcaaggaaacaattgttgaagtaccggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40586" stop="41869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40886" g_stop="41569" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="670" r_length="651" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E485157" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40886" e_stop="41569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTG</genome_strand>
        <mrna_strand>TAAAAATCCATTCTTTAAGCCTTTTTCATTTCTGGATATCTGAAATTTGATCGGAAAATCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACAACCCCTG-A--------------TGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAAATGTGCCGGAGTCACCGGAGAAAGTTGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTACCGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCGGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCACGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGAAGCCGTTTCCGCCGATGC-CC-----C--TG-C---T---GA-G--GCACCGGCGGCGACACCTGAGCCAGTGATAGAGGCAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGGAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGTACCGGCAGCAGAGACACCATCTGAGCCATCAGCAGCAGAGAAGGTGGAGGCAGTCGAAGAAATCAAGGAAACAATTGTTGAAGTACCGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726073" ref_strand="+" ref_description="SGN-E726073 [LA10AH08]">
      <seq>aaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggcagaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40588" stop="41564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40888" g_stop="41264" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E726073" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40888" e_stop="41264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCC</genome_strand>
        <mrna_strand>AAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCAGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338886" ref_strand="+" ref_description="SGN-E338886 [cTOE-21-M16]">
      <seq>aaatccattctttaagcttttttcggtgctgggtatctgaaatctgatcgggacaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40589" stop="41522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40889" g_stop="41222" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E338886" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40889" e_stop="41222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGT</genome_strand>
        <mrna_strand>AAATCCATTCTTTAAGCTTTTTTCGGTGCTGGGTATCTGAAATCTGATCGGGACACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266717" ref_strand="+" ref_description="SGN-E266717 [cLEI-5-L4]">
      <seq>atccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgagaagaaagttgaaacagagaaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactacggcgccggcagcagagacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40591" stop="41796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40891" g_stop="41496" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E266717" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40891" e_stop="41496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCA</genome_strand>
        <mrna_strand>ATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTACGGCGCCGGCAGCAGAGACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485694" ref_strand="+" ref_description="SGN-E485694 [cSTE-19-K11]">
      <seq>ttctttaagcctttttcatttctggatatctgaaatttgatcggaaaatcaagaaatggctgaggaaaccaagaaaatagctgaagaaacaacccctgatgttacagtgagggagacacctcaacctgagccggaaaatgtgccggagtcaccggagaaagttgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttaccgaatccaattcctttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40596" stop="41490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40896" g_stop="41190" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E485694" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.054" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40896" e_stop="41190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAA</genome_strand>
        <mrna_strand>TTCTTTAAGCCTTTTTCATTTCTGGATATCTGAAATTTGATCGGAAAATCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACAACCCCTG-A-------TGT-T------ACAGTGAGGGAGACACCTCAACCTGAGCCGGAAAATGTGCCGGAGTCACCGGAGAAAGTTGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTACCGAATCCAATTCCTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305708" ref_strand="+" ref_description="SGN-E305708 [cLEX-14-E15]">
      <seq>tgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctccttctccgccgccggctaaggaagaggatgagaagaaagcagccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgataagaaagttgaaacagagaaattggagaaaacagaggagaaagtcactccaccggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40737" stop="41763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41037" g_stop="41463" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E305708" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41037" e_stop="41463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACT</genome_strand>
        <mrna_strand>TGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTTCTCCGCCGCCGGCTAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGATAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTCACTCCACCGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419923" ref_strand="+" ref_description="SGN-E419923 [STM-30-M14]">
      <seq>acttcctaatcctgaacaaaaagcattggcggaattcaaacagatggttcaagaagctcttaacaagcacgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagaagccgtttccgccgatgcccctgctgaggcaccggcggcgacacctgagccagtgatagaggcagaatcggaaccggtggccgagaagaaagttgaaacagaggaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggtaccggcagcagagacaccatctgagccatcagcagcagagaaggtggaggcagtcgaagaaatcaaggaaacaattgttgaagtaccggctgcggttgctgtggtggcctccacggaggagccaccggctgcagaagcagaggaaccaaaaacagagcaaactcttccaccaccaccaccagaagaagtaaccatatggggaattccccttctagcagatgagagaagtgatgtaatccttctcaagtttctgcgagcaagagatttcaaggtgaaagaagctttcgccatgttgaaaagtgttgttgcatggagaaaagaattcaagattgatgaactcttggatgagaaagaattaggacaaggacttgaaaaggttgtttacaatcatggagtagacaaagaaagtcaccctgtatgttacaatgcatttggtgagttcccaagacaagaattgtaccaaaacacttttgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40875" stop="42253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41175" g_stop="41953" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E419923" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41175" e_stop="41953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAAC-C--CCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTT-CCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATG</genome_strand>
        <mrna_strand>ACTTCCTAATCCTGAACAAAAAGCATTGGCGGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCACGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGAAGCCGTTTCCGCCGATGC-CC-----C--TG-C---T---GA-G--GCACCGGCGGCGACACCTGAGCCAGTGATAGAGGCAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGGAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGTACCGGCAGCAGAGACACCATCTGAGCCATCAGCAGCAGAGAAGGTGGAGGCAGTCGAAGAAATCAAGGAAACAATTGTTGAAGTACCGGCTGCGGTTGCTGTGGTGGCCTCCACGGAGGAGCCACCGGCTGCAGAAGCAGAGGAACCAAAAACAGAGCAAACTCTTCCACCACCACCACCAGAAGAAGTAACCATATGGGGAATTCCCCTTCTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCAAGAGATTTCAAGGTGAAAGAAGCTTTCGCCATGTTGAAAAGTGTTGTTGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAGGTTGTTTACAATCATGGAGTAGACAAAGAAAGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCCAAGAC-AAGAATTGTACCAAAACACTTTTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445344" ref_strand="+" ref_description="SGN-E445344 [cSTA-45-C2]">
      <seq>acttcctaatcctgaacaaaaagcattggcggaattcaaacagatggttcaagaagctcttaacaagcacgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagaagccgtttccgccgatgcccctgctgaggcaccggcggcgacacctgagccagtgatagaggcagaatcggaaccggtggccgagaagaaagttgaaacagaggaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggtaccggcagcagagacaccatctgagccatcagcagcagagaaggtggaggcagtcgaagaaatcaaggaaacaattgttgaagtaccggctgcggttgctgtggtggcctccacggaggagccaccggctgcagaagcagaggaaccaaaaacagagcaaactcttccaccaccaccaccagaagaagtaaccatatggggaattccccttctagcagatgagagaagtgatgtaatccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40875" stop="42017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41175" g_stop="41717" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E445344" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41175" e_stop="41717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAAC-C--CCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCT</genome_strand>
        <mrna_strand>ACTTCCTAATCCTGAACAAAAAGCATTGGCGGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCACGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGAAGCCGTTTCCGCCGATGC-CC-----C--TG-C---T---GA-G--GCACCGGCGGCGACACCTGAGCCAGTGATAGAGGCAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGGAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGTACCGGCAGCAGAGACACCATCTGAGCCATCAGCAGCAGAGAAGGTGGAGGCAGTCGAAGAAATCAAGGAAACAATTGTTGAAGTACCGGCTGCGGTTGCTGTGGTGGCCTCCACGGAGGAGCCACCGGCTGCAGAAGCAGAGGAACCAAAAACAGAGCAAACTCTTCCACCACCACCACCAGAAGAAGTAACCATATGGGGAATTCCCCTTCTAGCAGATGAGAGAAGTGATGTAATCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485206" ref_strand="+" ref_description="SGN-E485206 [cSTE-17-A9]">
      <seq>cagaatccgagcctgtggccgagaagaaagttgaaacagaggaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggcaccggcagcagagacaccatcggcgacagagaaggtggaggcagtcgaagaaatcaaggaaacaattgttgaagtaccggctgcggttgctgtggtggcctccacggaggagccaccggctgcagaagcagaggaaccaaaaacagagcaaactcttccaccaccaccaccagaagaagtaaccatatggggaattccccttctagcagatgagagaagtgatgtaatccttctcaagtttctgcgagcaagagatttcaaggtgaaagaagctttcgccatgttgaaaagtgttgttgcatggagaaaagaattcaagattgatgaactcttggatgagaaagaattaggacaaggacttgaaaaggttgtttacaatcatggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgacaaggagaaactcaccaaattcctcagatggagaattcagttcatggagaagtccatcaggaatcttgattttagccctgatggtatcaacacttttgttcaggttcttgatctgaagaattcacctggactcttcttttacaagaaagaacttcgccaggccaccaatcgtgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41081" stop="42431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41381" g_stop="42131" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E485206" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41381" e_stop="42131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAAC-C--CCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCT</genome_strand>
        <mrna_strand>CAGAATCCGAGCCTGTGGCCGAGAAGAAAGTTGAAACAGAGGAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCACCGGCAGCAGAGACACCATC-G-G----C---GACAGAGAAGGTGGAGGCAGTCGAAGAAATCAAGGAAACAATTGTTGAAGTACCGGCTGCGGTTGCTGTGGTGGCCTCCACGGAGGAGCCACCGGCTGCAGAAGCAGAGGAACCAAAAACAGAGCAAACTCTTCCACCACCACCACCAGAAGAAGTAACCATATGGGGAATTCCCCTTCTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCAAGAGATTTCAAGGTGAAAGAAGCTTTCGCCATGTTGAAAAGTGTTGTTGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAGGTTGTTTACAATCATGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAGGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAGTTCATGGAGAAGTCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAGGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAGGCCACCAATCGTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471568" ref_strand="+" ref_description="SGN-E471568 [cSTB-24-O24]">
      <seq>tcggagcctgtagccgagaagaaagttgaaacagaggaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggcaccggcaacagagacaccatcggagacagagaaggtggaggcagtcgaagaaatcaagaaacaattgttgaagtaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41086" stop="41866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41386" g_stop="41566" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E471568" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="1.058" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41386" e_stop="41566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGG</genome_strand>
        <mrna_strand>TCGGAGCCTGTAGCCGAGAAGAAAGTTGAAACAGAGGAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCACCGGCAACAGAG--A-CA-C----C-ATCGGAGACAGAGAAGGTGGAGGCAGTCGAAGAAATCAA-GAAACAATTGTTGAAGTACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273454" ref_strand="+" ref_description="SGN-E273454 [cLEN-3-J3]">
      <seq>agaaagtaactccaccggaaactgaagcaactccggcgccggcagcagagacaccatctgagccatcggagacagagaaggtggaggcagtcgaggaaatcaaggaaaccattgttgaagtaccggctgcggttgctgtgatggcctccacggaggagccaccggctgcagaggcagaggaaccgaaaacagagcaaaccccaccagcagcaccagaagaagtatccatatggggaataccccttttagcagatgagagaagtgatgtaatccttctcaagtttctgcgagcgagagatttcaaggtgaaagaagctttcaccatgttgaaaagtgttgtcgcatggagaaaagaattcaagattgatgaactcttggatgagaaagaattaggacaaggacttgaaaaagttgtttacaatcacggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41141" stop="42255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41441" g_stop="41955" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E273454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41441" e_stop="41955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGAC</genome_strand>
        <mrna_strand>AGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303190" ref_strand="+" ref_description="SGN-E303190 [cLEX-5-L24]">
      <seq>tccaccggaaactgaagcaactccggcgccggcagcagagacaccatctgagccatcggagacagagaaggtggaggcagtcgaggaaatcaaggaaaccattgttgaagtaccggctgcggttgctgtgatggcctccacggaggagccaccggctgcagaggcagaggaaccgaaaacagagcaaaccccaccagcagcaccagaagaagtatccatatggggaataccccttttagcagatgagagaagtgatgtaatccttctcaagtttctgcgagcgagagatttcaaggtgaaagaagctttcaccatgttgaaaagtgttgtcgcatggagaaaagaattcaagattgatgaactcttggatgagaaagaattaggacaaggacttgaaaaagttgtttacaatcacggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41151" stop="42255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41451" g_stop="41955" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E303190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41451" e_stop="41955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGAC</genome_strand>
        <mrna_strand>TCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268050" ref_strand="+" ref_description="SGN-E268050 [cLEI-15-P13]">
      <seq>atctgagccatcggagacagagaaagtggaggcagtcgaggaaatcaaggaaaccattgttgaagtaccggctgcggttgctgtgatggcctccacggaggagccaccggctgcagaggcagaggaaccgaaaacagagcaaaccccaccagcagcaccagaagaagtatccatatggggaataccccttttagcagatgagagaagtgatgtaatccttctcaagtttctgcgagcgagagatttcaaggtgaaagaagctttcaccatgttgaaaagtgttgtcgcatggagaaaagaattcaagattgatgaactcttggatgagaaagaattaggacaaggacttgaaaaagttgtttacaatcacggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgacaaagagaaactcaccaaattcctcagatggagaattcaattcatggagaaatccatcaggaatcttgattttagccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41196" stop="42336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41496" g_stop="42036" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E268050" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41496" e_stop="42036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGAT</genome_strand>
        <mrna_strand>ATCTGAGCCATCGGAGACAGAGAAAGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457994" ref_strand="+" ref_description="SGN-E457994 [cPRO-4-G24]">
      <seq>gagccaccggctgcagaagcagaggaaccaaaaacagagcaaactcttccaccaccaccaccagaagaagtatccatatggggaattccccttctagcagatgagagaagtgatgtaatccttctcaagtttcttcgagcaagagatttcaaggtgaaagaagctttcaccatgttgaaaagtgttgttgcatggagaaaagaattcaagattgatgaagtcttggatgagaaagaattaggacaaggacttgaaaaagttgtttacaatcatggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagagttgtaccaaaacacttttactgatgacaaggagaaactcaccaaattcctcagatggagaattcagttcatggagaagtccatcaggaatcttgattttagccctgatggcatcaacacttttgttcaaattcttgatctgaagaattcacctggactcttcttttacaagaaagaacttcgccaggccaccaatcgtgcccttctattactccaggataactaccctgaatttgttgccaaacaggtgttcatcaatgttccatggtggtacccagcttactacaggatgattaatgcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41296" stop="42613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41596" g_stop="42174" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42255" g_stop="42313" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="641" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E457994" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41596" e_stop="42174"/>
          <exon e_start="42255" e_stop="42313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAAC-C--CCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTACCCTTAAAGCTGTTTTTATATTGTTATATGATGTTGGTATTTAGATATTAACTGGATTTTGATGTTATGGTGTGAAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTT</genome_strand>
        <mrna_strand>GAGCCACCGGCTGCAGAAGCAGAGGAACCAAAAACAGAGCAAACTCTTCCACCACCACCACCAGAAGAAGTATCCATATGGGGAATTCCCCTTCTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTTCGAGCAAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTTGCATGGAGAAAAGAATTCAAGATTGATGAAGTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCATGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAGTTGTACCAAAACACTTTTACTGATGACAAGGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAGTTCATGGAGAAGTCCATCAGGAATCTTGATTTTAGCCCTGATGGCATCAACACTTTTGTTCAAATTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAGGCCACCAATCGTGCCCTTCTATTACTCCAGGATAACTACCCTGAATTTGTTGCCAAACAG................................................................................GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202188" ref_strand="+" ref_description="SGN-E202188 [cLEC-7-N19]">
      <seq>aagctttcaccatgttgaaaagtgttgtcgcatggagaaaagaattcaggagtgatgaactcttggatgagaaacaattaggacaaggacttgaaaaagttggttacaatcacggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgacaaagagaaactcaccaaattcctcaaatggagaattcaattcatggagaaatccatcaggaatcttgattttagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41453" stop="42333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41753" g_stop="42033" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E202188" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41753" e_stop="42033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCT</genome_strand>
        <mrna_strand>AAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAGGAGTGATGAACTCTTGGATGAGAAACAATTAGGACAAGGACTTGAAAAAGTTGGTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAAATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394049" ref_strand="+" ref_description="SGN-E394049 [TUS-14-E20]">
      <seq>ctttcaccatgttgaaaagtgttgtcgcatggagaaaagaattcaagattgatgaactcttggatgagaaagaattaggacaaggacttgaaaaagttgtttacaatcacggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgacaaagagaaactcaccaaattcctcagatggagaattcaattcatggagaaatccatcaggaatcttgattttagccctgatggtatcaacacttttgttcaagttcttgatctgaagaattcacctggactcttcttttacaagaaagaacttcgccaagccaccaatcgtgcccttctattactccaggataattaccctgaatttgttgccaagcaggtgttcatcaatgttccatggtggtacccagcttactacaggatgattaatgcatctttcactacaaggaccaagagcaagtttgtttttgctggtccttcaagatctgctgatactctattcaaatacatagcacctgaacaagtaccagcacaatatggtggacttagcaaggagggtgaagaggaattcaccactgctgaaccagccactgaggaaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41456" stop="42858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41756" g_stop="42174" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42255" g_stop="42379" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="544" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42459" g_stop="42558" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="644" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E394049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41756" e_stop="42174"/>
          <exon e_start="42255" e_stop="42379"/>
          <exon e_start="42459" e_stop="42558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTACCCTTAAAGCTGTTTTTATATTGTTATATGATGTTGGTATTTAGATATTAACTGGATTTTGATGTTATGGTGTGAAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATT</genome_strand>
        <mrna_strand>CTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG................................................................................GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA...............................................................................ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397553" ref_strand="+" ref_description="SGN-E397553 [TUS-46-A9]">
      <seq>ctttcaccatgttgaaaagtgttgtcgcatggagaaaagaattcaagattgatgaactcttggatgagaaagaattaggacaaggacttgaaaaagttgtttacaatcacggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgacaaagagaaactcaccaaattcctcagatggagaattcaattcatggagaaatccatcaggaatcttgattttagccctgatggtatcaacacttttgttcaagttcttgatctgaagaattcacctggactcttcttttacaagaaagaacttcgccaagccaccaatcgtgcccttctattactccaggataattaccctgaatttgttgccaagcaggtgttcatcaatgttccatggtggtacccagcttactacaggatgattaatgcatctttcactacaaggaccaagagcaagtttgtttttgctggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41456" stop="42651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41756" g_stop="42174" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42255" g_stop="42351" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="516" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E397553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41756" e_stop="42174"/>
          <exon e_start="42255" e_stop="42351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTACCCTTAAAGCTGTTTTTATATTGTTATATGATGTTGGTATTTAGATATTAACTGGATTTTGATGTTATGGTGTGAAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTC</genome_strand>
        <mrna_strand>CTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG................................................................................GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202303" ref_strand="+" ref_description="SGN-E202303 [cLEC-6-I12]">
      <seq>tttcaccatgttgaaaagtgttgtcgcatggagaaaagaattcaagattgatgaactcttggatgagaaagaattaggacaaggacttgaaaaagttgtttacaatcacggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgacaaagagaaactcaccaaattcctcagatggagaattcaattcatggagaaatccatcaggaatcttgattttagccctgatggtatcaacacttttgttcaagttcttgatctgaagaattcacctggactcttcttttacaagaaagaacttcgccaagccaccaatcgtgcccttctattactccaggataattaccctgaatttgttgccaagcaggtgttcatcaatgttccatggtggtacccagcttactacaggatgattaatgcatctttcactacaaggaccaagagcaagtttgtttttgctggtccttcaagatctgctgatactctattcaaatacatagcacctgaacaagtaccagcacaatatggtggacttagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41457" stop="42806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41757" g_stop="42174" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42255" g_stop="42379" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="543" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42459" g_stop="42506" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="591" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E202303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41757" e_stop="42174"/>
          <exon e_start="42255" e_stop="42379"/>
          <exon e_start="42459" e_stop="42506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTACCCTTAAAGCTGTTTTTATATTGTTATATGATGTTGGTATTTAGATATTAACTGGATTTTGATGTTATGGTGTGAAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAA</genome_strand>
        <mrna_strand>TTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG................................................................................GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA...............................................................................ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270890" ref_strand="+" ref_description="SGN-E270890 [cLEM-6-H21]">
      <seq>tgagaaagaattatgacaaggacttgaaaaagttgtttacaatcacggagtagacaaagaaagtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgacaaagagaaactcaccaaattcctcagatggagaattcaattcatggagaaatccatcaggaatcttgattttagccctgatggtatcaacacttttgttcaagttcttgatctgaagaattcacctggactcttcttttacaagaaagaacttcgccaagccaccaatcgtgcccttctattactccaggataattaccctgaatttgttgccaagcaggtgttcatcaatgttccatggtggtacccagcttactacaggatgattaatgcatctttcactacaaggaccaagagcaagtttgtttttgctggtccttcaagatctgctgatactctattcaaatacatagcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41520" stop="42691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41820" g_stop="42174" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42255" g_stop="42379" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="480" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42459" g_stop="42472" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="494" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E270890" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41820" e_stop="42174"/>
          <exon e_start="42255" e_stop="42379"/>
          <exon e_start="42459" e_stop="42472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTACCCTTAAAGCTGTTTTTATATTGTTATATGATGTTGGTATTTAGATATTAACTGGATTTTGATGTTATGGTGTGAAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTG</genome_strand>
        <mrna_strand>TGAGAAAGAATTATGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAAGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG................................................................................GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA...............................................................................ATACATAGCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319502" ref_strand="+" ref_description="SGN-E319502 [cTOB-15-K23]">
      <seq>atccatcaggaatcttgattttagccctgatggtatcaacacttttgttcaagttcttgatctgaagaattcacctggactcttcttttacaagaaagaacttcgccaagccaccaatcgtgcccttctattactccaggataattaccctgaatttgttgccaagcaggtgttcatcaatgttccatggtggtacccagcttactacaggatgattaatgcatctttcactacaaggaccaagagcaagtttgtttttgctggtccttcaagatctgctgatactctattcaaatacatagcacctgaacaagtaccagcacaatatggtggacttagcaaggagggtgaagaggaattcaccactgctgaaccagccactgaggaaatcattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtggcctagtgctgagggggctacaccattctcatagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41706" stop="43207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42006" g_stop="42174" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42255" g_stop="42379" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="294" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42459" g_stop="42600" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="436" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42804" g_stop="42907" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="540" r_length="104" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E319502" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42006" e_stop="42174"/>
          <exon e_start="42255" e_stop="42379"/>
          <exon e_start="42459" e_stop="42600"/>
          <exon e_start="42804" e_stop="42907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTACCCTTAAAGCTGTTTTTATATTGTTATATGATGTTGGTATTTAGATATTAACTGGATTTTGATGTTATGGTGTGAAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGT-GCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAA</genome_strand>
        <mrna_strand>ATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG................................................................................GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA...............................................................................ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGGCCTAGTGCTG-AGGGGGCTACACCATTCTCATAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320260" ref_strand="+" ref_description="SGN-E320260 [cTOB-21-D21]">
      <seq>ttccatggtggtacccagcttactacaggatgattaatgcatctttcactacaaggaccaagagcaagtttgtttttgctggtccttcaagatctgctgatactctattcaaatacatagcacctgaacaagtaccagcacaatatggtggacttagcaaggagggtgaagaggaattcaccactgctgaaccagccactgaggaaatcattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaaggtattgatacattttcgtctgaaatattttgtgtaaatctaatgctgcctctcattttccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41968" stop="43611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42268" g_stop="42379" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42459" g_stop="42600" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="254" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42804" g_stop="43318" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="769" r_length="515" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E320260" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42268" e_stop="42379"/>
          <exon e_start="42459" e_stop="42600"/>
          <exon e_start="42804" e_stop="43318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTT</genome_strand>
        <mrna_strand>TTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA...............................................................................ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGGTATTGATACATTTTCGTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320110" ref_strand="+" ref_description="SGN-E320110 [cTOB-21-F11]">
      <seq>tccatggtggtacccagcttactacaggatgattaatgcatctttcactacaaggaccaagagcaagtttgtttttgctggtccttcaagatctgctgatactctattcaaatacatagcacctgaacaagtaccagcacaatatggtggacttagcaaggagggtgaagaggaattcaccactgctgaaccagccactgaggaaatcattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacgattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgatggattgttttttttattatatggggaatatttattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41969" stop="43517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42269" g_stop="42379" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42459" g_stop="42600" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="253" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42804" g_stop="43217" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="667" r_length="414" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E320110" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42269" e_stop="42379"/>
          <exon e_start="42459" e_stop="42600"/>
          <exon e_start="42804" e_stop="43217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATAT</genome_strand>
        <mrna_strand>TCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA...............................................................................ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACGATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGATGGATTGTTTTTTTTATTATATGGGGAATATTTATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287422" ref_strand="+" ref_description="SGN-E287422 [cLES-15-D7]">
      <seq>caagatctgctgatactctattcaaatacatagcacctgaacaagtaccagcacaatatggtggacttagcaaggagggtgaagaggaattcaccactgctgaaccagccactgaggaaatcattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttatttttttgagctattttgctgttggattgttttttttattatatggggaatatttattatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42055" stop="43519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42355" g_stop="42379" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42459" g_stop="42600" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="167" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42804" g_stop="43219" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="584" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E287422" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42355" e_stop="42379"/>
          <exon e_start="42459" e_stop="42600"/>
          <exon e_start="42804" e_stop="43219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTA-TTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTA</genome_strand>
        <mrna_strand>CAAGATCTGCTGATACTCTATTCAA...............................................................................ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393901" ref_strand="+" ref_description="SGN-E393901 [TUS-14-E20](-)">
      <seq>tacatagcacctgaacaagtaccagcacaatatggtggacttagcaaggagggtgaagaggaattcaccactgctgaaccagccactgaggaaatcattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatttcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgatacattttcttttgaaatattttgtgtaaatttaatgctgcctctcattttccttacatttttttggtgatgtgaagcttaacgttagttaatcctatacttatgtttcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42160" stop="45444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42460" g_stop="42600" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42804" g_stop="43364" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="702" r_length="561" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43365" i_stop="44130" i_length="766">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44131" g_stop="44152" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="724" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E393901" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42460" e_stop="42600"/>
          <exon e_start="42804" e_stop="43364"/>
          <exon e_start="44131" e_stop="44152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCTATATTTTGGTCCACTTTCATAAGTTTTTCATCTTCCTGTTTTTATGTAAAAAAAGTTTATCCCTAATTGTGATATTTTTGAATTAGGGTTTAAAGGGGTTCTAGTAAAATATTACATAAGGATTGTACTCTTTAGGGAGAGACTCTCTTTCTTTCTCAGATTCAAATGCGGGACCGGTAGTAGGGGTCAACGTTTTTGCTGTTACAGAATCCCGTGCTCGAGAGATAGTTCAGACGATAAATATTTTTACTTCCATTCAGACGATAAACACCTTTACTTCCATTCATTGTGAAATTCGAGTGTGTAAGTAAACGAACTTGCAATTGAAAGTGAGAAATGTTAGCAAATTCACAACTTTTCAATACTTAAAATTTGAGCAACGTCAAAATAAATTATTATAATTTGCTCAAGTGGGTCTAAAAGATAAGGCAGTACAATAATTTAGCCCAGAAAAGGTCCAAAATTGTTCCGTAACTTTGGACAGATTCAAAATCGTCTTTTATGTTTAAATTAAAATTAAAAATAGTCTTCCATCTTTTTGCAAACTGCTTTATTTTTATCCTCAAGATATGTGATGTTTCCACTTAGTACTCCAACACACTCAAAATTTAAGGTAATGCTATACTGACAACAACATATATTTAACAACATATATTTCATATTCATATTGAATTCTGACTAAATTTAAACTTACATAAGTGCTCACGAGTTTGATTTTCAATGAATTCTATTATATAAAACATTTCACTCCCTAATTAACTATGTGAAAAACAAAAAAAAAAAGAAGA</genome_strand>
        <mrna_strand>TACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATTTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTTTGAAATATTTTGTGTAAATTTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349751" ref_strand="+" ref_description="SGN-E349751 [cTOS-3-C14]">
      <seq>aggaaatcattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgatacattttcttctgaaatattttgtgtaaatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42248" stop="43588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42548" g_stop="42600" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42804" g_stop="43287" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="537" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="547"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E349751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42548" e_stop="42600"/>
          <exon e_start="42804" e_stop="43287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTA</genome_strand>
        <mrna_strand>AGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397552" ref_strand="+" ref_description="SGN-E397552 [TUS-46-A9](-)">
      <seq>gaaatcattaagccaggttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattttcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttttaaaaagaagaaacttgtttacaggtccaagaacaagatttcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgatacatttttttttgaaatattttgtgtaaatttaatgctgcctttcattttccttacatttttttggtgatgtgaagcttaacgttagttaatcctatacttatgtttcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42250" stop="45444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42550" g_stop="42600" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42804" g_stop="43364" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="612" r_length="561" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43365" i_stop="44130" i_length="766">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44131" g_stop="44152" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="634" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E397552" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42550" e_stop="42600"/>
          <exon e_start="42804" e_stop="43364"/>
          <exon e_start="44131" e_stop="44152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCTATATTTTGGTCCACTTTCATAAGTTTTTCATCTTCCTGTTTTTATGTAAAAAAAGTTTATCCCTAATTGTGATATTTTTGAATTAGGGTTTAAAGGGGTTCTAGTAAAATATTACATAAGGATTGTACTCTTTAGGGAGAGACTCTCTTTCTTTCTCAGATTCAAATGCGGGACCGGTAGTAGGGGTCAACGTTTTTGCTGTTACAGAATCCCGTGCTCGAGAGATAGTTCAGACGATAAATATTTTTACTTCCATTCAGACGATAAACACCTTTACTTCCATTCATTGTGAAATTCGAGTGTGTAAGTAAACGAACTTGCAATTGAAAGTGAGAAATGTTAGCAAATTCACAACTTTTCAATACTTAAAATTTGAGCAACGTCAAAATAAATTATTATAATTTGCTCAAGTGGGTCTAAAAGATAAGGCAGTACAATAATTTAGCCCAGAAAAGGTCCAAAATTGTTCCGTAACTTTGGACAGATTCAAAATCGTCTTTTATGTTTAAATTAAAATTAAAAATAGTCTTCCATCTTTTTGCAAACTGCTTTATTTTTATCCTCAAGATATGTGATGTTTCCACTTAGTACTCCAACACACTCAAAATTTAAGGTAATGCTATACTGACAACAACATATATTTAACAACATATATTTCATATTCATATTGAATTCTGACTAAATTTAAACTTACATAAGTGCTCACGAGTTTGATTTTCAATGAATTCTATTATATAAAACATTTCACTCCCTAATTAACTATGTGAAAAACAAAAAAAAAAAGAAGA</genome_strand>
        <mrna_strand>GAAATCATTAAGCCAGGTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTTTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTTTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATTTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTTTTTTGAAATATTTTGTGTAAATTTAATGCTGCCTTTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353082" ref_strand="+" ref_description="SGN-E353082 [cTOS-14-B10]">
      <seq>aatcattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgatacattttcttctgaaatattttgtgtaaatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42252" stop="45444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42552" g_stop="42600" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42804" g_stop="43287" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="533" r_length="484" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43288" i_stop="44131" i_length="844">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44132" g_stop="44147" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="549" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E353082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42552" e_stop="42600"/>
          <exon e_start="42804" e_stop="43287"/>
          <exon e_start="44132" e_stop="44147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCTATATTTTGGTCCACTTTCATAAGTTTTTCATCTTCCTGTTTTTATGTAAAAAAAGTTTATCCCTAATTGTGATATTTTTGAATTAGGGTTTAAAGGGGTTCTAGTAAAATATTACATAAGGATTGTACTCTTTAGGGAGAGACTCTCTTTCTTTCTCAGATTCAAATGCGGGACCGGTAGTAGGGGTCAACGTTTTTGCTGTTACAGAATCCCGTGCTCGAGAGATAGTTCAGACGATAAATATTTTTACTTCCATTCAGACGATAAACACCTTTACTTCCATTCATTGTGAAATTCGAGTGTGTAAGTAAACGAACTTGCAATTGAAAGTGAGAAATGTTAGCAAATTCACAACTTTTCAATACTTAAAATTTGAGCAACGTCAAAATAAATTATTATAATTTGCTCAAGTGGGTCTAAAAGATAAGGCAGTACAATAATTTAGCCCAGAAAAGGTCCAAAATTGTTCCGTAACTTTGGACAGATTCAAAATCGTCTTTTATGTTTAAATTAAAATTAAAAATAGTCTTCCATCTTTTTGCAAACTGCTTTATTTTTATCCTCAAGATATGTGATGTTTCCACTTAGTACTCCAACACACTCAAAATTTAAGGTAATGCTATACTGACAACAACATATATTTAACAACATATATTTCATATTCATATTGAATTCTGACTAAATTTAAACTTACATAAGTGCTCACGAGTTTGATTTTCAATGAATTCTATTATATAAAACATTTCACTCCCTAATTAACTATGTGAAAAACAAAAAAAAAAA</genome_strand>
        <mrna_strand>AATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268590" ref_strand="-" ref_description="SGN-E268590 [cLEI-13-L3]">
      <seq>ttgcggtgatgagtgtgagatttgaagacggagcccattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgataaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42255" stop="45444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42555" g_stop="42600" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="81" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42804" g_stop="43254" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="532" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43255" i_stop="44136" i_length="882">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44137" g_stop="44161" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="556" r_length="24" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E268590" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268590" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42555" e_stop="42600"/>
          <exon e_start="42804" e_stop="43254"/>
          <exon e_start="44137" e_stop="44161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCTATATTTTGGTCCACTTTCATAAGTTTTTCATCTTCCTGTTTTTATGTAAAAAAAGTTTATCCCTAATTGTGATATTTTTGAATTAGGGTTTAAAGGGGTTCTAGTAAAATATTACATAAGGATTGTACTCTTTAGGGAGAGACTCTCTTTCTTTCTCAGATTCAAATGCGGGACCGGTAGTAGGGGTCAACGTTTTTGCTGTTACAGAATCCCGTGCTCGAGAGATAGTTCAGACGATAAATATTTTTACTTCCATTCAGACGATAAACACCTTTACTTCCATTCATTGTGAAATTCGAGTGTGTAAGTAAACGAACTTGCAATTGAAAGTGAGAAATGTTAGCAAATTCACAACTTTTCAATACTTAAAATTTGAGCAACGTCAAAATAAATTATTATAATTTGCTCAAGTGGGTCTAAAAGATAAGGCAGTACAATAATTTAGCCCAGAAAAGGTCCAAAATTGTTCCGTAACTTTGGACAGATTCAAAATCGTCTTTTATGTTTAAATTAAAATTAAAAATAGTCTTCCATCTTTTTGCAAACTGCTTTATTTTTATCCTCAAGATATGTGATGTTTCCACTTAGTACTCCAACACACTCAAAATTTAAGGTAATGCTATACTGACAACAACATATATTTAACAACATATATTTCATATTCATATTGAATTCTGACTAAATTTAAACTTACATAAGTGCTCACGAGTTTGATTTTCAATGAATTCTATTATATAAAACATTTCACTCCCTAATTAACTATGTGAAAAACAAAAAAAAAAAGAAGAGAAACTAGA</genome_strand>
        <mrna_strand>CATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA-AAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330629" ref_strand="-" ref_description="SGN-E330629 [cTOD-8-D10]">
      <seq>tgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgatacattttcttctgaaatattttgtgtaaatctaatgctgcctctcattttccttacatttttttggtgatgtgaagcttaacgttagttaatcctatacttatgtttcctaaaaaaaaaaaaaaaaaactgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42282" stop="45444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42582" g_stop="42600" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42804" g_stop="43364" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="580" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="599"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E330629" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330629" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42582" e_stop="42600"/>
          <exon e_start="42804" e_stop="43364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCT</genome_strand>
        <mrna_strand>TGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354991" ref_strand="+" ref_description="SGN-E354991 [cTOS-19-H7]">
      <seq>caagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttggggggatttatttatattttattgggggtattttttgaactattttgctggtggaatggtttttttaatatatggggaatatttattatattaccaaaggggtgaaaaggggaagaccaagtaatgataccttttcctctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42526" stop="43572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42826" g_stop="43277" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E354991" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42826" e_stop="43277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTG</genome_strand>
        <mrna_strand>CAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGGATTTATTTATATTTTATTGGGGGTATTTTTTGAACTATTTTGCTGGTGGAATGGTTTTTTTAATATATGGGGAATATTTATTATATTACCAAAGGGGTGAAAAGGGGAAGACCAAGTAATGATACCTTTTCCTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353511" ref_strand="+" ref_description="SGN-E353511 [cTOS-15-G24]">
      <seq>caagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgatacattttcttctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42526" stop="43572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42826" g_stop="43277" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E353511" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42826" e_stop="43277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTG</genome_strand>
        <mrna_strand>CAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352029" ref_strand="+" ref_description="SGN-E352029 [cTOS-13-M16]">
      <seq>tcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgatacattttcttctgaaatattttgtgtaaatctaatgctgcctctcattttccttannnnnnaaananannnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42549" stop="43609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42849" g_stop="43310" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="501"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E352029" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42849" e_stop="43310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTAC</genome_strand>
        <mrna_strand>TCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397755" ref_strand="+" ref_description="SGN-E397755 [TUS-46-B9](-)">
      <seq>ctgaatttgtgcttagtgttgaagggggtttcgccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactaggtacaaggcaagtgaagcaggcaaagtggtaatcgcaattgacaaccaaacttctaaaaagaagaaatttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtattattattttgagctttttgggggtatttatttatattttattggggttattttttgaggtattttgttggtggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagtaatggatacagttttttttgaaatatttagtgtaaatataatgatgcctctcattttccttacatttttttggggatgtgaaggtaaacgttagtgaatccatatactgtggtttcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42559" stop="45444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42859" g_stop="43364" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43365" i_stop="44130" i_length="766">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44131" g_stop="44152" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="529" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E397755" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42859" e_stop="43364"/>
          <exon e_start="44131" e_stop="44152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCC-TATACTTATGTTTCCTATATTTTGGTCCACTTTCATAAGTTTTTCATCTTCCTGTTTTTATGTAAAAAAAGTTTATCCCTAATTGTGATATTTTTGAATTAGGGTTTAAAGGGGTTCTAGTAAAATATTACATAAGGATTGTACTCTTTAGGGAGAGACTCTCTTTCTTTCTCAGATTCAAATGCGGGACCGGTAGTAGGGGTCAACGTTTTTGCTGTTACAGAATCCCGTGCTCGAGAGATAGTTCAGACGATAAATATTTTTACTTCCATTCAGACGATAAACACCTTTACTTCCATTCATTGTGAAATTCGAGTGTGTAAGTAAACGAACTTGCAATTGAAAGTGAGAAATGTTAGCAAATTCACAACTTTTCAATACTTAAAATTTGAGCAACGTCAAAATAAATTATTATAATTTGCTCAAGTGGGTCTAAAAGATAAGGCAGTACAATAATTTAGCCCAGAAAAGGTCCAAAATTGTTCCGTAACTTTGGACAGATTCAAAATCGTCTTTTATGTTTAAATTAAAATTAAAAATAGTCTTCCATCTTTTTGCAAACTGCTTTATTTTTATCCTCAAGATATGTGATGTTTCCACTTAGTACTCCAACACACTCAAAATTTAAGGTAATGCTATACTGACAACAACATATATTTAACAACATATATTTCATATTCATATTGAATTCTGACTAAATTTAAACTTACATAAGTGCTCACGAGTTTGATTTTCAATGAATTCTATTATATAAAACATTTCACTCCCTAATTAACTATGTGAAAAACAAAAAAAAAAAGAAGA</genome_strand>
        <mrna_strand>CTGAATTTGTGCTTAGTGTTGAAGGGGGTTTCGCCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGGTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCGCAATTGACAACCAAACTTCTAAAAAGAAGAAATTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTATTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGGTATTTTGTTGGTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTAATGGATACAGTTTTTTTTGAAATATTTAGTGTAAATATAATGATGCCTCTCATTTTCCTTACATTTTTTTGGGGATGTGAAGGTAAACGTTAGTGAATCCATATACTGTGGTTTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427528" ref_strand="+" ref_description="SGN-E427528 [STM-48-L3]">
      <seq>cggaaaatatcaaaatcttcaaagaaaggccaattccgtttctcttctccttatcgtgaacactttcgccggttgatttcatcgatcgtcgttcaattatcatcacctgtaaatggagatgagaatagaatcggcaactccaaagtccgatcacgtcgccggaatgggtttgtacattccggtgaatgattcgaataatgcgaccgcgtcgtttctccctagacgccttcgccgacgccttcttgaaaccaaaactccttccattattaccgcccaagatattgaaaccaagctgaaggacgccgaattacgtcgtcagcaattttatgagttattgtcgagcaaggcacggccgaaattgagatcgtcgacattctcattgtcgcaggatggggagcttagaaagcaactagaagccaagcttcttgctgctgaaaagaagaggttgagcatccttgtgaaagttcagaagcgcttggcaagattagatgagcttagacaagcagctaaaaatgctgtggaaatgcgttttgagaaagaacgtgatgagctgggcaataaggttgagtcacgagctcagcgggcagaattgaaccgggaggttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54770" stop="58563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55070" g_stop="55384" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55385" i_stop="57162" i_length="1778">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57163" g_stop="57287" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="444" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57288" i_stop="58099" i_length="812">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58100" g_stop="58263" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="608" r_length="164" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E427528" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55070" e_stop="55384"/>
          <exon e_start="57163" e_stop="57287"/>
          <exon e_start="58100" e_stop="58263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATATCAAAATCTTCAAAAGAAGGCCAATTCCG-TTCTCCTCTCTTTATCGTGAACACTTTCGCCGGTTGATTTCATCGATCGTCGTTC-A--ATCATCACCTGCAAATGGAAATGGGAATAGAATCGGCTACTCCGAAGTCCGATCACGTCGCCGGAATGGCTTTGAACATTCCGGTGAATGATTCGAATTATGCGACGGCGTTGTTCCTCCCTAGACGCCTTCGCCGACGCCTTCTTGAAACCAAAACTCCTTCCATTATTACCGCCCAAGATATTGAAACCAAGCTTAAGGACGCCGAATTACGTCGTCAGGTAGTTATACTTTTCCTGTTCGTTTTCTTTTGTTCCTATTATATAATTGTTGCAAATATGTGATCCGTTTTGCTAGGATAGGGAATTTTTAGGTTAATTTGACTGCTGTATGCATAATTAGTGATAGTAGAATGAAAATTATTATAGAAATGGTTGAGAAAATGAATTTGCATTCTTGACTATTTATTAATGAACTGGTATTAAGTAAGCAAAGTTCTGGATATGGCATACGGGAAGCAAAGTATTACTCAAGGCTATAGGTTTTTTAATGATGTGCCATTTGGAAAGATCAAAGTACTACTCCAGGATATAGGTCTTCACAATGGCAGATACCCAACAAGAATGGAACTTGTTTTAGTAGTTTATTCAAATTGAAGAATGTTAAATAAAAACTTAGTATTGTGTAGTCGAACATTGTAGCTTCAAGTGGGATTTCTAATTATATTGTTTGAATAATTTTGTCTAGTCCAGATGTTTAATAGAGGTTTTTGTCTATTTCAGATATGCTAAGAGAATTGATACTTAACATCAGTAAATCTCTGTTCTGTATCTACCAAGGATATATAATTATTGAAGAAAGTCTAGTACACTTGGATATTTCGGAATGGTAGTGAGGCTAATGACTTCTGCTTAGGATTCTTTAATGGAATGAAGGATTTTTTTTTTCTTATTATTCTTGGTAGAAACAACAAACGTATCAACTACCATAGGGAAGTTTTTAGGAAAATATCAACCATCAGTAGTTTATTAGATTCCTAAATTCATCCTGAATTTTTATAAACTTGAAACTGTAAACCACACTGCATTCATGTGAGCCATTGACTAATAAGGTAGAAATTTTGTGTGAAGTAAATAGAAAGAAAAGAAATAGATATGAAGGTAAGGTAAAAAAAAAGGAAGACATATTGGATTGGTAGACATGATGACTTTATAAGGTCATATGAGTTCCTTGTTAAGGCGACTTAAAATCTTATGTTAAATCATCTATTTTTTCATTAAAAAAAGAAACTCATTTACTATGTTAAAGTCAATTCTAGCAGTATACTGTGCAAGGTAAAAAAAAGGAAGACATATTGGATTGGTAGACATGATGACTTTATAAGGTCATATGAGTTCCTTGTTAAGGCGACTTAAAATCTTTGTTAAATCATCTATTTTTTCATTAAAAGGGAAACTCATTTACTTTGTTAAAGTCAATTCTAGCAGTATACCACGCACAATATTGCTTTAGGTGATATTAAGTATCTACTTATTTTATTATGTTTATCCAGAGCAAGTTCAAATGAGATGCAAAACAGATGTTTTCTTCCGCCAATGCATGATAATCAGAGCTTTAAATTCGAATTTATGGATTCTTTTATTTAATTCACCTCATTTTAATTGTTTAGTTGACAATTGGGTTAAAAATGAAAAACCTATTCATGATGGCATTTTAGAAGAATATGTGTGGCTCATATTAGTATTGTTCAGAAATTTGTCAACTTGCCTAGCTCTTTTACAATACAAGATATAGAATGGTATTACCACAACGAATTTGAACCTAAAAATATAGTCCGATGGTTTACTTGATTAAGCCAAGTATTTGCTTAACATGGCGAACAATCCAACTTTTGTCAGAACTTGTAGTTGAGTATTATGCTTAGGCATTTTTTAACTTGAACTAAGTTGCCTGGCTGCTTTTGATGGTTTAGAGCATATGAAGGAATTTATCAATATGTTATTATGCGTGATGTGGTAAGTCTATGTTGAGTTGTTGACCAAACATTATTAAAATGCAGCAATTTTATGAGTTATTGTCAAGCAAGGCACGGCCGAAATTGAGATTGTCGACATGCTCATTTTCGCAGGATGGGGAGCTTAGAAAGCAACTAGAAGCCAAGCTTCTTGCTGCTGAAAAGAAGAGGTAAACTGTTCGGGCTTCTTTATATTTGTCAATCTCCTTCATCAAACATAAGTATTTGGACAATAGTGTTATACTTTTTTTTATTGGTAAAAGAGTGTCATAACTCATACGTGCATCATGTTATAAGCTGATCTGTGATGATTTAAGAAATTAAGCCTTTAATGTTGCATGTATAACTTATGGATTCCTTTCCCTTACTAAATGGTTTCCTTTTGATTTTCCAGTTGGGAAGGGCTGGAGTGAGTGTTGCTCATTTCTTGTCTGTATAAATTCATCATTCTTGAGTTCTTTTTGACAAATTTTCTTTAACATAGTAACTGAGTTACTAGGTTTTTGTTTTGCTCAGTAATGTGTAAATGAGTACACAGGAAAAAGTACAATTGGCTACCCAAAAACTCATTTACTATGTTAAGGTGGTGGCAATTGGTTCGATCATTGGGTTGAAGGGTGAGAAAGTTTTGGTACTCTGAAAGATCTATGAGTTGCTATTCTTTTAACCACAACTAGATAAGTTGGAGTAAAAATTAGCCATCTCCAATTTGTATTAGTTGTAACCCAAGTGGCATCGTGGACTTTGTGTGAAAGAGAATAAAGGATAAGGATGAGAAGTGCGAACTTGGCAAAATGTGAGAACTGTAAATCTGTAACGAATGTGATTAACTTTGGGTAGGGGTAAGATTTCAATGCGAAATGACAAGTCGAAACCCAACCTGTTGTTTTACTGGTAGGCCCAGTCCAATTATTGTACATACAACTTTTATAGGCCTCAAATTCAGTTATGGTTTGCTATTGGCTTTGTACTTGTTAAGCAGGTTGAGCATCCTTGCGAAAGTTCAGAAGCGCTTGGCAAGATTAGATGAGCTTAGACAAGCAGCTAAAAATGCTGTGGAAATGCGTTTTGAGAAAGAACGTGATGAGCTTGGCAATAAGGTTGAGTCACGAGCTCAGCGGGCAGAATTGAACCGGAGGGTTCTTC</genome_strand>
        <mrna_strand>CGGAAAATATCAAAATCTTCAAAGAAAGGCCAATTCCGTTTCTCTTCTCCTTATCGTGAACACTTTCGCCGGTTGATTTCATCGATCGTCGTTCAATTATCATCACCTGTAAATGGAGATGAGAATAGAATCGGCAACTCCAAAGTCCGATCACGTCGCCGGAATGGGTTTGTACATTCCGGTGAATGATTCGAATAATGCGACCGCGTCGTTTCTCCCTAGACGCCTTCGCCGACGCCTTCTTGAAACCAAAACTCCTTCCATTATTACCGCCCAAGATATTGAAACCAAGCTGAAGGACGCCGAATTACGTCGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTTTATGAGTTATTGTCGAGCAAGGCACGGCCGAAATTGAGATCGTCGACATTCTCATTGTCGCAGGATGGGGAGCTTAGAAAGCAACTAGAAGCCAAGCTTCTTGCTGCTGAAAAGAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCATCCTTGTGAAAGTTCAGAAGCGCTTGGCAAGATTAGATGAGCTTAGACAAGCAGCTAAAAATGCTGTGGAAATGCGTTTTGAGAAAGAACGTGATGAGCTGGGCAATAAGGTTGAGTCACGAGCTCAGCGGGCAGAATTGAACCGGGAGGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487282" ref_strand="+" ref_description="SGN-E487282 [cSTE-25-E17]">
      <seq>cggaaaatatcaaaatcttcaaagaaaggccaattccgtttctcttctccttatcgtgaacactttcgccggttgatttcatcgatcgtcgttcaattatcatcacctgtaaatggagatgagaatagaatcggcaactccaaagtccgatcacgtcgccggaatgggtttgtacattccggtgaatgattcgaataatgcgaccgcgtcgtttctccctagacgccttcgccgacgccttcttgaaaccaaaactccttccattattaccgcccaagatattgaaaccaagctgaaggacgccgaattacgtcgtcagcaattttatgagttattgtcgagcaaggcacggccgaaattgagatcgtcgacattctcattgtcgcaggatggggagcttanaaagcaactagaagccaagcttcttgctgctgaaaagaagaggttgagcatccttgtgaaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54770" stop="58422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55070" g_stop="55384" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55385" i_stop="57162" i_length="1778">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57163" g_stop="57287" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="444" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57288" i_stop="58099" i_length="812">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58100" g_stop="58122" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="467" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E487282" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55070" e_stop="55384"/>
          <exon e_start="57163" e_stop="57287"/>
          <exon e_start="58100" e_stop="58122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATATCAAAATCTTCAAAAGAAGGCCAATTCCG-TTCTCCTCTCTTTATCGTGAACACTTTCGCCGGTTGATTTCATCGATCGTCGTTC-A--ATCATCACCTGCAAATGGAAATGGGAATAGAATCGGCTACTCCGAAGTCCGATCACGTCGCCGGAATGGCTTTGAACATTCCGGTGAATGATTCGAATTATGCGACGGCGTTGTTCCTCCCTAGACGCCTTCGCCGACGCCTTCTTGAAACCAAAACTCCTTCCATTATTACCGCCCAAGATATTGAAACCAAGCTTAAGGACGCCGAATTACGTCGTCAGGTAGTTATACTTTTCCTGTTCGTTTTCTTTTGTTCCTATTATATAATTGTTGCAAATATGTGATCCGTTTTGCTAGGATAGGGAATTTTTAGGTTAATTTGACTGCTGTATGCATAATTAGTGATAGTAGAATGAAAATTATTATAGAAATGGTTGAGAAAATGAATTTGCATTCTTGACTATTTATTAATGAACTGGTATTAAGTAAGCAAAGTTCTGGATATGGCATACGGGAAGCAAAGTATTACTCAAGGCTATAGGTTTTTTAATGATGTGCCATTTGGAAAGATCAAAGTACTACTCCAGGATATAGGTCTTCACAATGGCAGATACCCAACAAGAATGGAACTTGTTTTAGTAGTTTATTCAAATTGAAGAATGTTAAATAAAAACTTAGTATTGTGTAGTCGAACATTGTAGCTTCAAGTGGGATTTCTAATTATATTGTTTGAATAATTTTGTCTAGTCCAGATGTTTAATAGAGGTTTTTGTCTATTTCAGATATGCTAAGAGAATTGATACTTAACATCAGTAAATCTCTGTTCTGTATCTACCAAGGATATATAATTATTGAAGAAAGTCTAGTACACTTGGATATTTCGGAATGGTAGTGAGGCTAATGACTTCTGCTTAGGATTCTTTAATGGAATGAAGGATTTTTTTTTTCTTATTATTCTTGGTAGAAACAACAAACGTATCAACTACCATAGGGAAGTTTTTAGGAAAATATCAACCATCAGTAGTTTATTAGATTCCTAAATTCATCCTGAATTTTTATAAACTTGAAACTGTAAACCACACTGCATTCATGTGAGCCATTGACTAATAAGGTAGAAATTTTGTGTGAAGTAAATAGAAAGAAAAGAAATAGATATGAAGGTAAGGTAAAAAAAAAGGAAGACATATTGGATTGGTAGACATGATGACTTTATAAGGTCATATGAGTTCCTTGTTAAGGCGACTTAAAATCTTATGTTAAATCATCTATTTTTTCATTAAAAAAAGAAACTCATTTACTATGTTAAAGTCAATTCTAGCAGTATACTGTGCAAGGTAAAAAAAAGGAAGACATATTGGATTGGTAGACATGATGACTTTATAAGGTCATATGAGTTCCTTGTTAAGGCGACTTAAAATCTTTGTTAAATCATCTATTTTTTCATTAAAAGGGAAACTCATTTACTTTGTTAAAGTCAATTCTAGCAGTATACCACGCACAATATTGCTTTAGGTGATATTAAGTATCTACTTATTTTATTATGTTTATCCAGAGCAAGTTCAAATGAGATGCAAAACAGATGTTTTCTTCCGCCAATGCATGATAATCAGAGCTTTAAATTCGAATTTATGGATTCTTTTATTTAATTCACCTCATTTTAATTGTTTAGTTGACAATTGGGTTAAAAATGAAAAACCTATTCATGATGGCATTTTAGAAGAATATGTGTGGCTCATATTAGTATTGTTCAGAAATTTGTCAACTTGCCTAGCTCTTTTACAATACAAGATATAGAATGGTATTACCACAACGAATTTGAACCTAAAAATATAGTCCGATGGTTTACTTGATTAAGCCAAGTATTTGCTTAACATGGCGAACAATCCAACTTTTGTCAGAACTTGTAGTTGAGTATTATGCTTAGGCATTTTTTAACTTGAACTAAGTTGCCTGGCTGCTTTTGATGGTTTAGAGCATATGAAGGAATTTATCAATATGTTATTATGCGTGATGTGGTAAGTCTATGTTGAGTTGTTGACCAAACATTATTAAAATGCAGCAATTTTATGAGTTATTGTCAAGCAAGGCACGGCCGAAATTGAGATTGTCGACATGCTCATTTTCGCAGGATGGGGAGCTTAGAAAGCAACTAGAAGCCAAGCTTCTTGCTGCTGAAAAGAAGAGGTAAACTGTTCGGGCTTCTTTATATTTGTCAATCTCCTTCATCAAACATAAGTATTTGGACAATAGTGTTATACTTTTTTTTATTGGTAAAAGAGTGTCATAACTCATACGTGCATCATGTTATAAGCTGATCTGTGATGATTTAAGAAATTAAGCCTTTAATGTTGCATGTATAACTTATGGATTCCTTTCCCTTACTAAATGGTTTCCTTTTGATTTTCCAGTTGGGAAGGGCTGGAGTGAGTGTTGCTCATTTCTTGTCTGTATAAATTCATCATTCTTGAGTTCTTTTTGACAAATTTTCTTTAACATAGTAACTGAGTTACTAGGTTTTTGTTTTGCTCAGTAATGTGTAAATGAGTACACAGGAAAAAGTACAATTGGCTACCCAAAAACTCATTTACTATGTTAAGGTGGTGGCAATTGGTTCGATCATTGGGTTGAAGGGTGAGAAAGTTTTGGTACTCTGAAAGATCTATGAGTTGCTATTCTTTTAACCACAACTAGATAAGTTGGAGTAAAAATTAGCCATCTCCAATTTGTATTAGTTGTAACCCAAGTGGCATCGTGGACTTTGTGTGAAAGAGAATAAAGGATAAGGATGAGAAGTGCGAACTTGGCAAAATGTGAGAACTGTAAATCTGTAACGAATGTGATTAACTTTGGGTAGGGGTAAGATTTCAATGCGAAATGACAAGTCGAAACCCAACCTGTTGTTTTACTGGTAGGCCCAGTCCAATTATTGTACATACAACTTTTATAGGCCTCAAATTCAGTTATGGTTTGCTATTGGCTTTGTACTTGTTAAGCAGGTTGAGCATCCTTGCGAAAGTTC</genome_strand>
        <mrna_strand>CGGAAAATATCAAAATCTTCAAAGAAAGGCCAATTCCGTTTCTCTTCTCCTTATCGTGAACACTTTCGCCGGTTGATTTCATCGATCGTCGTTCAATTATCATCACCTGTAAATGGAGATGAGAATAGAATCGGCAACTCCAAAGTCCGATCACGTCGCCGGAATGGGTTTGTACATTCCGGTGAATGATTCGAATAATGCGACCGCGTCGTTTCTCCCTAGACGCCTTCGCCGACGCCTTCTTGAAACCAAAACTCCTTCCATTATTACCGCCCAAGATATTGAAACCAAGCTGAAGGACGCCGAATTACGTCGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTTTATGAGTTATTGTCGAGCAAGGCACGGCCGAAATTGAGATCGTCGACATTCTCATTGTCGCAGGATGGGGAGCTTANAAAGCAACTAGAAGCCAAGCTTCTTGCTGCTGAAAAGAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCATCCTTGTGAAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569618" ref_strand="+" ref_description="SGN-E569618 [14080]">
      <seq>cctgacgaaagttcagaagcgcttggcaagattagatgagcttagacaagcagctaaaaatgctgtggaaatgcgttttgagaaagaacgtgatgagctgggcaataaggttgacgtcacgagctcagcgggcagaattgaaccggagggttcttcttaaatgtaagcaactggaaggctgcaagaatagggaacgaatttcacagttgctaacaaggagggtaatgcaagcagagcaaatacagggcagtgtgtccgggctgctattcatcggaagcgggctgctgctgaaaagaagcgactgggatttctggaagcagagagatcaaaggcacgtgcaagaatattacacgttaagcagatagcaaactctgtatatagtcaacgggagattgagaggataagactaaaagatcaactgggagaatcgttctccaaaggcaaagaggctcagagcagagtatttaaagcagaggcgaagtctgctaagttcacgtcattcttgttcagacataattgcgtggggggagttattgtctattaacgtagcaaggtgctggagacggttcatccaactaagacgaacaactttttcattgggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57810" stop="63173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58109" g_stop="58541" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58542" i_stop="61328" i_length="2787">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61329" g_stop="61441" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="553" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61442" i_stop="62821" i_length="1380">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62822" g_stop="62873" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="605" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E569618" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58109" e_stop="58541"/>
          <exon e_start="61329" e_stop="61441"/>
          <exon e_start="62822" e_stop="62873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCGAAAGTTCAGAAGCGCTTGGCAAGATTAGATGAGCTTAGACAAGCAGCTAAAAATGCTGTGGAAATGCGTTTTGAGAAAGAACGTGATGAGCTTGGCAATAAGGTTGA-GTCACGAGCTCAGCGGGCAGAATTGAACCGGAGGGTTCTTCTTAAATGTAGGCAA-TGGAAGGCTGCAA-AA-AGGGAACGAATTTCACAGTTGCTAACAAGGAGGGTAATGCAAG-AGAGCAAATACAGGG-AGTGTGTTGGGGCTGCTATTCATCGGAAGCGGGCTGCTGCTGAAAAGAAGAGACTGGGATTTCTGGAAGCAGAGAGATCAAAGGCACGTGCAAGAATAGTACAAGTTAAGCAGATAGCAAACTCTGTATATCGTCAACGGGAGATTGAGAGGATAAGACTAAAAGATCAACT-GGAGAATCG-TCTCCAAAAGGTATGTTGTTAATCTAATTGAACGCGAAAGGTTACTATGTATTCTATTAAGGAACTCAACATGAATAGGAGGCCAAACAGTGGAAAAAGCTTTCTGAGGGAATTTATAATTGATACAAAGACTTAAAGAAGCACTCTGCAAATTTATTTTTTTGAAACTAGTGACTTTTGTATTCCTCAGCATTAAGGGCTATGCTGGCCACCTCCAAAAAAATATCATCGAAAAAGACAGAAAGATCCTATAAAATCCACTAATTGGATCTCCTCCTCTATATCTTGTTCTTTTTACCAAAAACCTACTACAGTGATAATTTTCCACTATCTTTTGTATAGACTATAGCTCATTCCTTTGCTTAAAAAATTCTTGGATTTTTTTTAATCCAGATGTTCCACCAAATACATGCTGGGACTCTTTTCCACTACCTCAACTGACTCTTGTTTCCTCCCCTTCTGATCCATTAGCTTAGTAAGTCTGCTGTGTGTTCTGGCATGACCTAGTTAATATTGGCTTTATTGGTAAATAAATCCCTCCTCTTCTGCATAGCCTCATGAGTCCAGTAGGCTCTTCTGGCTACCAACCAAGTGAAGCATTTCACTTTAGTTGGGGCCACATGCTTCCAGCTTTTTTCCCAAGGACCTACACTTCCAAGTAATCCTCAGTTGTAAATTCTGTTTACAGATGTATGTCCCCACACTAATCTGTCTGGTTCTAGATTAGTGCCATGGAATCCCCCTATCAATTTCAGAAGCACTCTGCACTTTTTTTTTCAATCTAACATCAGAAGCAATAGAGCTCAAGTAGTTGAACATCCTTGGGTATAATGGCGATTGAAAATCACATTAAAAATCAAAAAGAGCATTTGACATAGTTTGACATGCTATATGAGAGCATCTAGTACTACATCAAATGTCTAAATCTATTCATGTTCTCTGATCAAAGGCTTGGTCCTGATAAAGGCGATCATTGGAGTATTTTTCATTAGTTTTTGTGCTAAACCAATTTTGCCCTTTCAAAAAGTCTATCCTGTATAACTACACTTATTTGTCATGTAAACATCATAAAAGAACAAAGTGTCATATTGGTGTCTAGTAGTGTAACTCAGGTATCCGCATTCAATTAGGGAAAAAGAGTCAAATTTTCCCTTCTACTTTCCTTTGTTGTCTGCATTAAACTTTGTTATACTATAGGGGCAAATTTACCCTACTGTTAGCAAAGGTTTCAAAATTACCCCCGTCCTAACAGAGTTACCAAATACCAAACGTATATATCTAAGAAATGATTACAAATTCTCACGTATTCCAAGTTTTTAGAAGGATCACAAAATTTGATGGGGAAATTCTAATTTTTGAGACGTGTTTCCCTCTTCTATTAATTATATTTGAAAAAGTAAAGAGAAGTTTCTAAATGTATAAGAGATATGAAAACTTATTCTGAAAAGAGGTGAATTTTGGATGATCTATACCTTTTTAGGTGGGTCAAATTAGAGGACTAATCAATAAGACAAGAAAACTTATTCTGAAAAGCGGTGAATCTTGGTCATAAAAAAGAAGCGGTGAATCTTGGATGATTTATACCTTTTTGGTGGGTCAGATTAGAGGACTAATCAATAAGACAAGACTTTGTCTAACTATTGAAGTTAACTGCTGAGATCCACTATTTTTGACAGCTGCCTCCAGTTTCTTAAGAGATGCTGATATGAGGGACCTTTTTTTAATTTTTTATGTAGTGTATATATATAGAGTTTAATTTCTATACATTTTTTAGTAATTTTTATACATTGATTGACAATATAAAAAGAACTTCATTATTAGGTTGCTGAATATCCTTTTATAGGTAACTTTCTATTATTAAAATAGATATGTAATTTAAAAAACGCTACTCCCTTCGTCCCTAATTACTTGTCCACTTTTCCTTTTATAGTTGTCCGTAATTACTTGTCCATTTTGACAAATTAAGAAAGGACGAATTTTTTTTTACCTATTCTATTAAATGACTAATTACTTTGAAAAATGTAGAACTTTTCATCCATTTTAAAATTAATAGGGGTAAAATGATAAAACTCACTACGTCATTAATTATTTTCTTAATAGGTGTGCCAATTCAAAAGTGGAAAAGTAAAACGGGATGGAGGGAATATTAATTAAATTACTTGTTGCGACATGTAAATAACATGAATAGAACACCCAACTTTTGACTTTTAACTTATATAATCCTCTTAAAAACAACCAATTCAAACACCCCCTAATTGTCTTTTATATTACAAGAGTATATTAAATGAATCAAATCAATTTTTGTGTTCTCAGAATCAATTATTGCCCATGCGAAACTCCATTAATATATGGGTTAGCAATTAGTTAGTGAATTTGCAGCCACATTTTGAACCTGCAGGCATAAATAAGCGTCTTGAAAAAAAATCTGAATCTGAAAATTGGGGATTTCTGTTAGGGCTGGAGGTAATTTTGATAACTTTGCTAACCACAGAGGTACCTTTGTCCCGATAGTATGACGGAGGTTAAATGTGGACAAAATTTTAAAGTAGAGGGGTAAATTTGACCTTTTCCCCTTCAATTAATGCATTAAATAAAGTAAGATAGCACAGAGTTAACACGAAACATGTGCCTGAGTGCTGTCTGATTGGTGTGGATGTTAAACATGTTTGACCCAATAGATTTCGCCCGTGTTTCTTAGCTGGTTGTTGGATTCATAATGGATTTATAATTTTTCTTGTATGAAGTAACTGCAAGTTATCATTGCTATACCAATGTCTAATATTGTTGTAATTGTTAGGCAAAGAGGCTCAGAGCAGAGTATTTAAAGCAGAGGCGAAGTCTGCTATGTTCACGTCGTTCTTGTTCAGACATAATTGCGTGGGGGGAGTTTTTGTCTTTTAACGTAGCAAGGTAAATTTGGAGCTATGAACTTTCTTTATGTTCGCATTCATTATTTTAGATGTTTCTATCTGTGGATATTTAATGTTGATAACAATTTTAAACTAAAGTAGGCTTTTGTCATTTTTACTTTATTAATCAAGAAGGAAGTCAGTGAACTGAATGGAAAGTCAAGTTCCAGATTCCTTCAGCAAACATGTTTAAAAGTAGGTTGTAGGGCATTTCAAGAACTTTTATTGCTGCAACTCTACAACTCTCTAGGTTCATTTACGCAAAAGAAATTAAGTATCTCAGTTTCTTAGGCTTCCATAATGTGATTTGGGGCTGTCTATGTTGTGCTGAACTTCAATATAATTTCATGTGAGCTCTTAAGAAAGTTCATTATTCTAGCATCCATGTGACCAATGGTTAATGAAGTGAGTGAAACCCATGGGTCACAAGGGGTTACATTCCAGCAGAGACAACTTTAGGTAATTTTCCCCCATGTCTTACATTTTGATTGGCAGACTCTGCATCTATGTTGGTGGGAGGTGTAGCCCATGGAATAGTTAATATTCAAAGTGCTGGCAAGCTTACCTGACACTACTGTGTCAAAAAAAAAGGACTTATAATTATTGCATGACATATATTATCATATTACATCCCTTCCCCTTTTAGCACTTTTTTCCTCGTGACGCTGAGGGGTTAGGTTGAGGCTTTGAGGTTTTGCATTATAAAGATCAAAGAGATCTTATAGGTACTCTGAAATGTAGTTAATTTTAACACTAGGTGATCTACTGGTACCTGCGCTGGGGTGATTTAGCAGGTATCATGGTAAATAAATTTAGGTGTGCGCAAGTTGGCTCAAACACAAGCTTATTAAAAAAAATTATGTAGTTAATTCTACATTATCAGAGGGATATTGCAATCAACCCATTGTTGGATTGAAAATTGTACCGTGCATTAAAGATTAAGCAAATGACAAACAACTGCTCGCCCTTAATTATATCCACTTCCAAGAGACAGTAAACTTTTGAAGCATATCGTAGGAGTTGAGTATTGCATTATGGTTAAAATACATAACAATTTTTGCTACTCTTTTTCTTTGAGAAATAAGTATCCTTTCATTTTTAAGTAAAGAAATATATGTCACAATCTTAAATTAAAAGTTAAGAAGAAAGAAATACACATCACAATTTGTTTGTTCCCTCTGTTCTGATGTGCTGACTACCACTATGAGGTGGTGTCGTTTTTTGTATTTGGACGTTCTTGTATGTGAAAATGAACTCAATAGTTTATCTAATATTATGTACAGATAACGTGCTATTTATTGGTTTCCTCTGTAGCACGGGTCATGCATTCTGGTTGTCCTCTTTTATCCTCACTGTAGCGTATTGTTATCATAATTTCCAGGTGCTGGAGGCGGTTCATCCAACTAAGACGAACAACTTTTTCATTGGCTAAA</genome_strand>
        <mrna_strand>CCTGACGAAAGTTCAGAAGCGCTTGGCAAGATTAGATGAGCTTAGACAAGCAGCTAAAAATGCTGTGGAAATGCGTTTTGAGAAAGAACGTGATGAGCTGGGCAATAAGGTTGACGTCACGAGCTCAGCGGGCAGAATTGAACCGGAGGGTTCTTCTTAAATGTAAGCAACTGGAAGGCTGCAAGAATAGGGAACGAATTTCACAGTTGCTAACAAGGAGGGTAATGCAAGCAGAGCAAATACAGGGCAGTGTGTCCGGGCTGCTATTCATCGGAAGCGGGCTGCTGCTGAAAAGAAGCGACTGGGATTTCTGGAAGCAGAGAGATCAAAGGCACGTGCAAGAATATTACACGTTAAGCAGATAGCAAACTCTGTATATAGTCAACGGGAGATTGAGAGGATAAGACTAAAAGATCAACTGGGAGAATCGTTCTCC-AAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGAGGCTCAGAGCAGAGTATTTAAAGCAGAGGCGAAGTCTGCTAAGTTCACGTCATTCTTGTTCAGACATAATTGCGTGGGGGGAGTTATTGTCTATTAACGTAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGAGACGGTTCATCCAACTAAGACGAACAACTTTTTCATTGGGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571514" ref_strand="+" ref_description="SGN-E571514 [14202]">
      <seq>ccttgcgaaagttcagaagcgcttggcaagattagatgagcttagacaagcagctaaaaatgctgtggaaatgcgttttgagaaagaacgtgatgagctgggcaataaggttgagtcacgagctcagcgggcagaattgaaccggagggttcttcttaaatgtaggcaacggaaggctgcaaaaagggaacgaatttcacagttgctaacaaggagggtaatgcaagagagcaaatacagggagtgtgtccgggctgctattcatcggaagcgggctgctgctgaaaagaagcgactgggatttctggaagcagagagatcaaaggcacgtgcaagaatattacaagttaagcagatagcaaactctgtatatagtcaacgggagattgagaggataagactaaaagatcaactggagaatcgtctccaaaaggcaaagaggctcagagcagagtatttaaagcagaggcgaagtctgctaagttcacgtcattcttgttcagacataattgcgtggggggagtttatgtctattaacgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57809" stop="61737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58109" g_stop="58541" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58542" i_stop="61328" i_length="2787">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61329" g_stop="61437" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="542" r_length="109" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E571514" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58109" e_stop="58541"/>
          <exon e_start="61329" e_stop="61437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCGAAAGTTCAGAAGCGCTTGGCAAGATTAGATGAGCTTAGACAAGCAGCTAAAAATGCTGTGGAAATGCGTTTTGAGAAAGAACGTGATGAGCTTGGCAATAAGGTTGAGTCACGAGCTCAGCGGGCAGAATTGAACCGGAGGGTTCTTCTTAAATGTAGGCAATGGAAGGCTGCAAAAAGGGAACGAATTTCACAGTTGCTAACAAGGAGGGTAATGCAAGAGAGCAAATACAGGGAGTGTGTTGGGGCTGCTATTCATCGGAAGCGGGCTGCTGCTGAAAAGAAGAGACTGGGATTTCTGGAAGCAGAGAGATCAAAGGCACGTGCAAGAATAGTACAAGTTAAGCAGATAGCAAACTCTGTATATCGTCAACGGGAGATTGAGAGGATAAGACTAAAAGATCAACTGGAGAATCGTCTCCAAAAGGTATGTTGTTAATCTAATTGAACGCGAAAGGTTACTATGTATTCTATTAAGGAACTCAACATGAATAGGAGGCCAAACAGTGGAAAAAGCTTTCTGAGGGAATTTATAATTGATACAAAGACTTAAAGAAGCACTCTGCAAATTTATTTTTTTGAAACTAGTGACTTTTGTATTCCTCAGCATTAAGGGCTATGCTGGCCACCTCCAAAAAAATATCATCGAAAAAGACAGAAAGATCCTATAAAATCCACTAATTGGATCTCCTCCTCTATATCTTGTTCTTTTTACCAAAAACCTACTACAGTGATAATTTTCCACTATCTTTTGTATAGACTATAGCTCATTCCTTTGCTTAAAAAATTCTTGGATTTTTTTTAATCCAGATGTTCCACCAAATACATGCTGGGACTCTTTTCCACTACCTCAACTGACTCTTGTTTCCTCCCCTTCTGATCCATTAGCTTAGTAAGTCTGCTGTGTGTTCTGGCATGACCTAGTTAATATTGGCTTTATTGGTAAATAAATCCCTCCTCTTCTGCATAGCCTCATGAGTCCAGTAGGCTCTTCTGGCTACCAACCAAGTGAAGCATTTCACTTTAGTTGGGGCCACATGCTTCCAGCTTTTTTCCCAAGGACCTACACTTCCAAGTAATCCTCAGTTGTAAATTCTGTTTACAGATGTATGTCCCCACACTAATCTGTCTGGTTCTAGATTAGTGCCATGGAATCCCCCTATCAATTTCAGAAGCACTCTGCACTTTTTTTTTCAATCTAACATCAGAAGCAATAGAGCTCAAGTAGTTGAACATCCTTGGGTATAATGGCGATTGAAAATCACATTAAAAATCAAAAAGAGCATTTGACATAGTTTGACATGCTATATGAGAGCATCTAGTACTACATCAAATGTCTAAATCTATTCATGTTCTCTGATCAAAGGCTTGGTCCTGATAAAGGCGATCATTGGAGTATTTTTCATTAGTTTTTGTGCTAAACCAATTTTGCCCTTTCAAAAAGTCTATCCTGTATAACTACACTTATTTGTCATGTAAACATCATAAAAGAACAAAGTGTCATATTGGTGTCTAGTAGTGTAACTCAGGTATCCGCATTCAATTAGGGAAAAAGAGTCAAATTTTCCCTTCTACTTTCCTTTGTTGTCTGCATTAAACTTTGTTATACTATAGGGGCAAATTTACCCTACTGTTAGCAAAGGTTTCAAAATTACCCCCGTCCTAACAGAGTTACCAAATACCAAACGTATATATCTAAGAAATGATTACAAATTCTCACGTATTCCAAGTTTTTAGAAGGATCACAAAATTTGATGGGGAAATTCTAATTTTTGAGACGTGTTTCCCTCTTCTATTAATTATATTTGAAAAAGTAAAGAGAAGTTTCTAAATGTATAAGAGATATGAAAACTTATTCTGAAAAGAGGTGAATTTTGGATGATCTATACCTTTTTAGGTGGGTCAAATTAGAGGACTAATCAATAAGACAAGAAAACTTATTCTGAAAAGCGGTGAATCTTGGTCATAAAAAAGAAGCGGTGAATCTTGGATGATTTATACCTTTTTGGTGGGTCAGATTAGAGGACTAATCAATAAGACAAGACTTTGTCTAACTATTGAAGTTAACTGCTGAGATCCACTATTTTTGACAGCTGCCTCCAGTTTCTTAAGAGATGCTGATATGAGGGACCTTTTTTTAATTTTTTATGTAGTGTATATATATAGAGTTTAATTTCTATACATTTTTTAGTAATTTTTATACATTGATTGACAATATAAAAAGAACTTCATTATTAGGTTGCTGAATATCCTTTTATAGGTAACTTTCTATTATTAAAATAGATATGTAATTTAAAAAACGCTACTCCCTTCGTCCCTAATTACTTGTCCACTTTTCCTTTTATAGTTGTCCGTAATTACTTGTCCATTTTGACAAATTAAGAAAGGACGAATTTTTTTTTACCTATTCTATTAAATGACTAATTACTTTGAAAAATGTAGAACTTTTCATCCATTTTAAAATTAATAGGGGTAAAATGATAAAACTCACTACGTCATTAATTATTTTCTTAATAGGTGTGCCAATTCAAAAGTGGAAAAGTAAAACGGGATGGAGGGAATATTAATTAAATTACTTGTTGCGACATGTAAATAACATGAATAGAACACCCAACTTTTGACTTTTAACTTATATAATCCTCTTAAAAACAACCAATTCAAACACCCCCTAATTGTCTTTTATATTACAAGAGTATATTAAATGAATCAAATCAATTTTTGTGTTCTCAGAATCAATTATTGCCCATGCGAAACTCCATTAATATATGGGTTAGCAATTAGTTAGTGAATTTGCAGCCACATTTTGAACCTGCAGGCATAAATAAGCGTCTTGAAAAAAAATCTGAATCTGAAAATTGGGGATTTCTGTTAGGGCTGGAGGTAATTTTGATAACTTTGCTAACCACAGAGGTACCTTTGTCCCGATAGTATGACGGAGGTTAAATGTGGACAAAATTTTAAAGTAGAGGGGTAAATTTGACCTTTTCCCCTTCAATTAATGCATTAAATAAAGTAAGATAGCACAGAGTTAACACGAAACATGTGCCTGAGTGCTGTCTGATTGGTGTGGATGTTAAACATGTTTGACCCAATAGATTTCGCCCGTGTTTCTTAGCTGGTTGTTGGATTCATAATGGATTTATAATTTTTCTTGTATGAAGTAACTGCAAGTTATCATTGCTATACCAATGTCTAATATTGTTGTAATTGTTAGGCAAAGAGGCTCAGAGCAGAGTATTTAAAGCAGAGGCGAAGTCTGCTATGTTCACGTCGTTCTTGTTCAGACATAATTGCGTGGGGGGAGTTTTTGTCTTTTAACGTAG</genome_strand>
        <mrna_strand>CCTTGCGAAAGTTCAGAAGCGCTTGGCAAGATTAGATGAGCTTAGACAAGCAGCTAAAAATGCTGTGGAAATGCGTTTTGAGAAAGAACGTGATGAGCTGGGCAATAAGGTTGAGTCACGAGCTCAGCGGGCAGAATTGAACCGGAGGGTTCTTCTTAAATGTAGGCAACGGAAGGCTGCAAAAAGGGAACGAATTTCACAGTTGCTAACAAGGAGGGTAATGCAAGAGAGCAAATACAGGGAGTGTGTCCGGGCTGCTATTCATCGGAAGCGGGCTGCTGCTGAAAAGAAGCGACTGGGATTTCTGGAAGCAGAGAGATCAAAGGCACGTGCAAGAATATTACAAGTTAAGCAGATAGCAAACTCTGTATATAGTCAACGGGAGATTGAGAGGATAAGACTAAAAGATCAACTGGAGAATCGTCTCCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGAGGCTCAGAGCAGAGTATTTAAAGCAGAGGCGAAGTCTGCTAAGTTCACGTCATTCTTGTTCAGACATAATTGCGTGGGGGGAGTTTATGTCTATTAACGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367492" ref_strand="+" ref_description="SGN-E367492 [cLPT-7-M9]">
      <seq>tgatgtggaaagttaaggatgtgaagttgttagaagaggatttaataaatactgcttgtcaactggagctctctctgatgcagacttgcaagcaggttatgggagattacgatgatctgacagccgaattcagttctttccagaagcaggtgattgaaaatcagaaacttatttgggcaaaggtcaagcagctgagtggtaatgctggacttgaacgtctggagcatgctctttctgagctgcggtctaggtttattgactccatggagactgattctccgagttcagttggttcatctgataactctgaaatcaagaattcagatgagttcaatgaaaatgccaggcccgtatctgtggaagatgattcatacttgtgcgataaaagtggctctggaactcctcaaaaaagcatatctactggtttattacgtgcaacggagaatgaagtgcttttgaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63088" stop="64454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63388" g_stop="63536" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63537" i_stop="63812" i_length="276">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63813" g_stop="64154" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="464" r_length="315" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E367492" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.058" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63388" e_stop="63536"/>
          <exon e_start="63813" e_stop="64154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTGGAAAGTTAAGGATGTGAAGTTGTTAGAAGAGGATTTAATAAATACTGCTTGTCAACTGGAGCTCTCTCTGATGCAGACTTGCAAGCAGGTTATGGGAGATTACGATGATCTGACAGCCGAATTCAGTTCTTTCCAGAGGCAGGTGTGGGTTTGCAAGACGCGAGTTGTTCTTGAAATCTGCATTTGATGACTCCCACTCCCTTGTCTCGTGGCTGAATATCCATCTTTTCATTTTGATGTCTAAATTTTTCCACGTGTCTATATCAATTATTGTTTTTCTTGATAAGCATTCTCTATACTACGTTTCTATTTTCAAATTTCTGTTTTATTTATTTTATCTGGAGAAAATGAGACACTGAATTGGAGATAGAATACATGTTTACTGGCTTAATTCCTTGAAGCTAACTTACTGTTACAGGTGATTGAAAATCAGAAACTTATTTGGGCAAAGGTCAAGCAGCTGAGTGGTAATGCTGGACTTGAACGTCTGGAGCATGCTCTTTCTGAGCTGCGGTCTAGGTTTATTGACTCCATGGAGACTGATTCTCCGAGTTCAGTTGGTTCATCTGATAACTCTGAAATCAAGAATTCAGATGAGTTCAATGAAAATGCCAGGTGTTATGGTACACAGGGCATTGCTTGGCCCGTATCTGTGGAAGATGATTCATACTTGTGCGATAAATGTGGCTCTGGAACTCCTCAAAAAAGCATATCTACTGGTTTATTACGTGCGACTGAGAATGAAGTGCTTTTGAATGAA</genome_strand>
        <mrna_strand>TGATGTGGAAAGTTAAGGATGTGAAGTTGTTAGAAGAGGATTTAATAAATACTGCTTGTCAACTGGAGCTCTCTCTGATGCAGACTTGCAAGCAGGTTATGGGAGATTACGATGATCTGACAGCCGAATTCAGTTCTTTCCAGAAGCAG....................................................................................................................................................................................................................................................................................GTGATTGAAAATCAGAAACTTATTTGGGCAAAGGTCAAGCAGCTGAGTGGTAATGCTGGACTTGAACGTCTGGAGCATGCTCTTTCTGAGCTGCGGTCTAGGTTTATTGACTCCATGGAGACTGATTCTCCGAGTTCAGTTGGTTCATCTGATAACTCTGAAATCAAGAATTCAGATGAGTTCAATGAAAATGCC-------A-GG----C----C-----------CGTATCTGTGGAAGATGATTCATACTTGTGCGATAAAAGTGGCTCTGGAACTCCTCAAAAAAGCATATCTACTGGTTTATTACGTGCAACGGAGAATGAAGTGCTTTTGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455776" ref_strand="+" ref_description="SGN-E455776 [cSTS-27-E14]">
      <seq>gttactttgaggaaactctcagtacctttggttgaagatgaattgaatactaatcaccagaaattcctgaaagaactaggggaaaatactcaggacagagaaaacagcactgcattgtttgcttctttggttatcaagggtttgcaatttgttctaaggcagattaagaaactcaaaggtgaaataagcaaagcacgcatcaaattgttggaaccattaatcaagggacctgctggttttgaataccttagaagttctttttccaaccgctatggtcctcctactgaggctccaatctctctaccattagtgaagcaatggctatcttctgtcatgttagtggctgggcaagagtgggatgaccacctgaattcattatcatctctgaggttgagcagtggtgcacattctttggagaaagctccaatcacacttagagctggaggtagctctctaaggatatcagatcctccaaccctgaggactaatgaagccgaacaaccagaatgcaagggagagaaggttgatctgtttttaaggctcggtttgttgcaacttgtctgtgaaattgaggggttgacagtggaaacactaccggagactttgaaattgaatttctccagattgagagctgtccaggctttcctccagaaaatcattgtaatctgtactagcatattggttttgcggcagactcttcttgctgaatgcctggttaccaacccctcagagatagaagatatatcatcaaaatctattacaaagctgtttaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64353" stop="67009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64653" g_stop="64820" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65182" g_stop="65503" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="490" r_length="322" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65504" i_stop="65593" i_length="90">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.902" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65594" g_stop="65777" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="674" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66608" g_stop="66709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="776" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E455776" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64653" e_stop="64820"/>
          <exon e_start="65182" e_stop="65503"/>
          <exon e_start="65594" e_stop="65777"/>
          <exon e_start="66608" e_stop="66709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTTTGAGGAAACTCTCAGCACCTTTGGTTGAAGATGAATTGAATACTAATCACCAGAAATTCCTGAAAGAACTAGGGGAAAATACTCGGGGCAGAGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAGGTGAGTGTTAAATATTGTCAATTATGGTACTCATATCTAGACTTTTATAATCATACAATATTTAAATATTCTACACTAAACATGGTTCCTATTTATTGCTTCATCGGTTCTATGCCAGCTCATAACACATTTAGCTCTTGTAAGACATTATCATAAAGTGCTAATAATGTGGTGTAACTTTCTCTGACTGAGCCTCCTTGAATAAATGCAAGTCGAACACTGAGCTTTATTGTCTTGAATGAATACTGGTACTTTCAACCAGGAAAAAGAAGAACCAGAAATCGTAATGGTGGCTTCTCTGTGCTGTTTAGCTTGTCCGCCCGCATGTATTTTAATTTGATAATTCCTTACATTCCTCCAGAAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATGGTTAGTTACTTCAGTACTAAACTTAAGAATCACTCAGTTTTTTCTTGCTCAGTTTTTTCTTTTATCACATCTGGGAATCTTTTGTATCAGCAGCCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAGGTGCTGTTACTTTTCTTGGCTTTCTTCCAGCTCCTTTCTCATGCCTGCATATTTTGATGATGTGCAATACACTGGTCAATTATGTATGGTGATCCTATTTTTTCTTCAGAATTTTAATTTCTGTGTTCTCATTGCGAGGGGTATGGAATGACCTGTAAGTTGCATTTCAGATGGGCTGTTGGTCTCATCTAAAGCAAAAATAGCTTTTTAATTTTTGTTAGTTTAGATTACTTTGGTCAGAGGAAACTGTTTTTGGTAAACAATAATTCGCAATGGTCTTCTATTAGCAACAGATGTAACATTTAATGCTAATTTTGGACATGCTTAGGGCAATGGATGGATTTTGCCTAGTTACATCCCATAAATTGTAATTGTGGGGTCAGTCATGAAAATTTGTAGGTGGCTACAAATTTAAGGCAGCATTATCTTAGACGTGTTGTAAATCGTGTGTTAGGCAAGAAAATATAGTTGCGAAGTGGTGGATACTTTCAACTGGGTGAGATGTGAGTTTTAACATATACTGGGGGAAATCTGGATAGAATATGCTGGTACTCATAATAGAAGACTTTTCAATTCCTCAAGGGGTCCATTGTGAGCAGGATATCCCCTGTAGGTTTAGAAAGTGGTGACTTGCAATTTTCCGTCTTAAAATTTGTTACTATTTTTGAATTTACTTGCTATCCGCGACCTTTTGTTTTCATCTGGAAGATTTGTGTTGTTGTACTTCGGGTGGTATTACCGGGGTTAGGAAAAAGGACATGATGTAGTGGAGGAGGATCTCTTTGCTTGCTAATTTTTTATTTATTTATTTTTTGTGTGTGTGTTTGCAGCATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCT</genome_strand>
        <mrna_strand>GTTACTTTGAGGAAACTCTCAGTACCTTTGGTTGAAGATGAATTGAATACTAATCACCAGAAATTCCTGAAAGAACTAGGGGAAAATACTCAGGACAGAGAAAACAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG.........................................................................................................................................................................................................................................................................................................................................................................AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCCAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGGGCAAGAGTGGGATGACCACCTGAATTCATTATCATCTCTGAGGTTGAGCAGTGGTGCACATTCTTTGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAGGACTAATG..........................................................................................AAGCCGAACAACCAGAATGCAAGGGAGAGAAGGTTGATCTGTTTTTAAGGCTCGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACAGTGGAAACACTACCGGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTTTCCTCCAGAAAATCATTGTAATCTGTACTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGGTTTTGCGGCAGACTCTTCTTGCTGAATGCCTGGTTACCAACCCCTCAGAGATAGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425990" ref_strand="+" ref_description="SGN-E425990 [STM-45-J22]">
      <seq>gttactttgaggaaactctcagtacctttggttgaagatgaattgaatactaatcaccagaaattcctgaaagaactaggggaaaatactcaggacagagaaaacagcactgcattgtttgcttctttggttatcaagggtttgcaatttgttctaaggcagattaagaaactcaaaggtgaaataagcaaagcacgcatcaaattgttggaaccattaatcaagggacctgctggttttgaataccttagaagttctttttccaaccgctatggtcctcctactgaggctccaatctctctaccattagtgaagcaatggctatcttctgtcatgttagtggctgggcaagagtgggatgaccacctgaattcattatcatctctgaggttgagcagtggtgcacattctttggagaaagctccaatcacacttagagctggaggtagctctctaaggatatcagatcctccaaccctgaggactaatgaagccgaacaaccagaatgcaagggagagaaggttgatctgtttttaaggctcggtttgttgcaacttgtctgtgaaattgaggggttgacagtggaaacactaccggagactttgaaattgatttctccagattgagagctgtccaggctttcctccagaaatcattgtaatctgtactagcatattgggtttgcggcagactcttcttgctgaaatgctggttaccaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64353" stop="66958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64653" g_stop="64820" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65182" g_stop="65503" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="490" r_length="322" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65504" i_stop="65593" i_length="90">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.902" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65594" g_stop="65777" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="672" r_length="182" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66608" g_stop="66658" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="723" r_length="51" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E425990" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64653" e_stop="64820"/>
          <exon e_start="65182" e_stop="65503"/>
          <exon e_start="65594" e_stop="65777"/>
          <exon e_start="66608" e_stop="66658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTTTGAGGAAACTCTCAGCACCTTTGGTTGAAGATGAATTGAATACTAATCACCAGAAATTCCTGAAAGAACTAGGGGAAAATACTCGGGGCAGAGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAGGTGAGTGTTAAATATTGTCAATTATGGTACTCATATCTAGACTTTTATAATCATACAATATTTAAATATTCTACACTAAACATGGTTCCTATTTATTGCTTCATCGGTTCTATGCCAGCTCATAACACATTTAGCTCTTGTAAGACATTATCATAAAGTGCTAATAATGTGGTGTAACTTTCTCTGACTGAGCCTCCTTGAATAAATGCAAGTCGAACACTGAGCTTTATTGTCTTGAATGAATACTGGTACTTTCAACCAGGAAAAAGAAGAACCAGAAATCGTAATGGTGGCTTCTCTGTGCTGTTTAGCTTGTCCGCCCGCATGTATTTTAATTTGATAATTCCTTACATTCCTCCAGAAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATGGTTAGTTACTTCAGTACTAAACTTAAGAATCACTCAGTTTTTTCTTGCTCAGTTTTTTCTTTTATCACATCTGGGAATCTTTTGTATCAGCAGCCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAGGTGCTGTTACTTTTCTTGGCTTTCTTCCAGCTCCTTTCTCATGCCTGCATATTTTGATGATGTGCAATACACTGGTCAATTATGTATGGTGATCCTATTTTTTCTTCAGAATTTTAATTTCTGTGTTCTCATTGCGAGGGGTATGGAATGACCTGTAAGTTGCATTTCAGATGGGCTGTTGGTCTCATCTAAAGCAAAAATAGCTTTTTAATTTTTGTTAGTTTAGATTACTTTGGTCAGAGGAAACTGTTTTTGGTAAACAATAATTCGCAATGGTCTTCTATTAGCAACAGATGTAACATTTAATGCTAATTTTGGACATGCTTAGGGCAATGGATGGATTTTGCCTAGTTACATCCCATAAATTGTAATTGTGGGGTCAGTCATGAAAATTTGTAGGTGGCTACAAATTTAAGGCAGCATTATCTTAGACGTGTTGTAAATCGTGTGTTAGGCAAGAAAATATAGTTGCGAAGTGGTGGATACTTTCAACTGGGTGAGATGTGAGTTTTAACATATACTGGGGGAAATCTGGATAGAATATGCTGGTACTCATAATAGAAGACTTTTCAATTCCTCAAGGGGTCCATTGTGAGCAGGATATCCCCTGTAGGTTTAGAAAGTGGTGACTTGCAATTTTCCGTCTTAAAATTTGTTACTATTTTTGAATTTACTTGCTATCCGCGACCTTTTGTTTTCATCTGGAAGATTTGTGTTGTTGTACTTCGGGTGGTATTACCGGGGTTAGGAAAAAGGACATGATGTAGTGGAGGAGGATCTCTTTGCTTGCTAATTTTTTATTTATTTATTTTTTGTGTGTGTGTTTGCAGCATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCC</genome_strand>
        <mrna_strand>GTTACTTTGAGGAAACTCTCAGTACCTTTGGTTGAAGATGAATTGAATACTAATCACCAGAAATTCCTGAAAGAACTAGGGGAAAATACTCAGGACAGAGAAAACAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG.........................................................................................................................................................................................................................................................................................................................................................................AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCCAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGGGCAAGAGTGGGATGACCACCTGAATTCATTATCATCTCTGAGGTTGAGCAGTGGTGCACATTCTTTGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAGGACTAATG..........................................................................................AAGCCGAACAACCAGAATGCAAGGGAGAGAAGGTTGATCTGTTTTTAAGGCTCGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACAGTGGAAACACTACCGGAGACTTTGAAATTG-ATTTCTCCAGATTGAGAGCTGTCCAGGCTTTCCTCCAG-AAATCATTGTAATCTGTACTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGGGTTTGCGGCAGACTCTTCTTGCTGAAATGCTGGTTACCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312080" ref_strand="+" ref_description="SGN-E312080 [cTOA-11-I10]">
      <seq>agaaaatagcactgcattgtttgcttctttggttatcaagggtttgcaatttgttctaaggcagattaagaaactcaaaggtgaaataagcaaagcacgcatcaaattgttggaaccattaatcaagggacctgctggttttgaataccttagaagttctttttccaaccgctatggtcctcctactgaggctctaatctctctaccattagtgaagcaatggctatcttctgtcatgttagtggctgtgcaagagtgggatgaccacctgagttcattatcatctctgaggttgagcagtggggcacattcttcggagaaagctccaatcacacttagagctggaggtagctctctaaggatatcagatcctccaaccctgaagactaatgccgaacaaccagaatgcaagggagataaggttgatctatttttaaggcttggtttgttgcaacttgtctgtgaaattgaggggttgaccgtggaaacactacccgagactttgaaattgaatttctccagattgagagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64451" stop="66038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64751" g_stop="64820" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65182" g_stop="65503" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="392" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65504" i_stop="65596" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65597" g_stop="65738" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="534" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E312080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64751" e_stop="64820"/>
          <exon e_start="65182" e_stop="65503"/>
          <exon e_start="65597" e_stop="65738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAGGTGAGTGTTAAATATTGTCAATTATGGTACTCATATCTAGACTTTTATAATCATACAATATTTAAATATTCTACACTAAACATGGTTCCTATTTATTGCTTCATCGGTTCTATGCCAGCTCATAACACATTTAGCTCTTGTAAGACATTATCATAAAGTGCTAATAATGTGGTGTAACTTTCTCTGACTGAGCCTCCTTGAATAAATGCAAGTCGAACACTGAGCTTTATTGTCTTGAATGAATACTGGTACTTTCAACCAGGAAAAAGAAGAACCAGAAATCGTAATGGTGGCTTCTCTGTGCTGTTTAGCTTGTCCGCCCGCATGTATTTTAATTTGATAATTCCTTACATTCCTCCAGAAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATGGTTAGTTACTTCAGTACTAAACTTAAGAATCACTCAGTTTTTTCTTGCTCAGTTTTTTCTTTTATCACATCTGGGAATCTTTTGTATCAGCAGCCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGT</genome_strand>
        <mrna_strand>AGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG.........................................................................................................................................................................................................................................................................................................................................................................AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATG.............................................................................................CCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312160" ref_strand="+" ref_description="SGN-E312160 [cTOA-11-I8]">
      <seq>agaaaatagcactgcattgtttgcttctttggttatcaagggtttgcaatttgttctaaggcagattaagaaactcaaaggtgaaataagcaaagcacgcatcaaattgttggaaccattaatcaagggacctgctggttttgaataccttagaagttctttttccaaccgctatggtcctcctactgaggctctaatctctctaccattagtgaagcaatggctatcttctgtcatgttagtggctgtgcaagagtgggatgaccacctgagttcattatcatctctgaggttgagcagtggggcacattcttcggagaaagctccaatcacacttagagctggaggtagctctctaaggatatcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64451" stop="65781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64751" g_stop="64820" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65182" g_stop="65481" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="370" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E312160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64751" e_stop="64820"/>
          <exon e_start="65182" e_stop="65481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAGGTGAGTGTTAAATATTGTCAATTATGGTACTCATATCTAGACTTTTATAATCATACAATATTTAAATATTCTACACTAAACATGGTTCCTATTTATTGCTTCATCGGTTCTATGCCAGCTCATAACACATTTAGCTCTTGTAAGACATTATCATAAAGTGCTAATAATGTGGTGTAACTTTCTCTGACTGAGCCTCCTTGAATAAATGCAAGTCGAACACTGAGCTTTATTGTCTTGAATGAATACTGGTACTTTCAACCAGGAAAAAGAAGAACCAGAAATCGTAATGGTGGCTTCTCTGTGCTGTTTAGCTTGTCCGCCCGCATGTATTTTAATTTGATAATTCCTTACATTCCTCCAGAAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGAT</genome_strand>
        <mrna_strand>AGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG.........................................................................................................................................................................................................................................................................................................................................................................AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312159" ref_strand="+" ref_description="SGN-E312159 [cTOA-11-I6]">
      <seq>cactgcattgtttgcttctttggttatcaagggtttgcaatttgttctaaggcagattaagaaactcaaaggtgaaataagcaaagcacgcatcaaattgttggaaccattaatcaagggacctgctggttttgaataccttagaagttctttttccaaccgctatggtcctcctactgaggctctaatctctctaccattagtgaagcaatggctatcttctgtcatgttagtggctgtgcaagagtgggatgaccacctgagttcattatcatctctgaggttgagcagtggggcacattcttcggagaaagctccaatcacacttagagctggaggtagctctctaaggatatcagatcctccaaccctgaagactaatgccgaacaaccagaatgcaagggagataaggttgatctatttttaaggcttggtttgttgcaacttgtctgtgaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64460" stop="65975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64760" g_stop="64820" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65182" g_stop="65503" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="383" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65504" i_stop="65596" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65597" g_stop="65675" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="462" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E312159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64760" e_stop="64820"/>
          <exon e_start="65182" e_stop="65503"/>
          <exon e_start="65597" e_stop="65675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAGGTGAGTGTTAAATATTGTCAATTATGGTACTCATATCTAGACTTTTATAATCATACAATATTTAAATATTCTACACTAAACATGGTTCCTATTTATTGCTTCATCGGTTCTATGCCAGCTCATAACACATTTAGCTCTTGTAAGACATTATCATAAAGTGCTAATAATGTGGTGTAACTTTCTCTGACTGAGCCTCCTTGAATAAATGCAAGTCGAACACTGAGCTTTATTGTCTTGAATGAATACTGGTACTTTCAACCAGGAAAAAGAAGAACCAGAAATCGTAATGGTGGCTTCTCTGTGCTGTTTAGCTTGTCCGCCCGCATGTATTTTAATTTGATAATTCCTTACATTCCTCCAGAAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATGGTTAGTTACTTCAGTACTAAACTTAAGAATCACTCAGTTTTTTCTTGCTCAGTTTTTTCTTTTATCACATCTGGGAATCTTTTGTATCAGCAGCCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGA</genome_strand>
        <mrna_strand>CACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG.........................................................................................................................................................................................................................................................................................................................................................................AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATG.............................................................................................CCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320866" ref_strand="+" ref_description="SGN-E320866 [cTOB-27-B18]">
      <seq>taccattagtgaagcaatggctatcttctgtcatgttagtggctgtgcaagagtgggatgaccacctgagttcattatcatctctgaggttgagcagtggggcacattcttcggagaaagctccaatcacacttagagctggaggtagctctctaaggatatcagatcctccaaccctgaagactaatgcagccgaacaaccagaatgcaagggagataaggttgatctatttttaaggcttggtttgttgcaacttgtctgtgaaattgaggggttgaccgtggaaacactacccgagactttgaaattgaatttctccagattgagagctgtccaggctatcctccagaaaatcattgttgtctgtactagcatattggttttgcggcagactcttcttgccgaatgcctggttagcagcccctcagagatggaagatatatcatcaaaatctattacaaagctgtttaagcttctggataacatggaggatgctggtattactgaagttgttgatacactgagcctttgcttagaaggtgatgagccaaagaagcttcaagcgaggaaggagatcatgggcgaacgtgttggcaaagagcttgcgagcaggggatgccattttcactcgagtttcgcgcactgtttttttggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65015" stop="67192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65315" g_stop="65503" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65504" i_stop="65593" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65594" g_stop="65777" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="373" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66608" g_stop="66892" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="659" r_length="286" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E320866" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65315" e_stop="65503"/>
          <exon e_start="65594" e_stop="65777"/>
          <exon e_start="66608" e_stop="66892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATGGTTAGTTACTTCAGTACTAAACTTAAGAATCACTCAGTTTTTTCTTGCTCAGTTTTTTCTTTTATCACATCTGGGAATCTTTTGTATCAGCAGCCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAGGTGCTGTTACTTTTCTTGGCTTTCTTCCAGCTCCTTTCTCATGCCTGCATATTTTGATGATGTGCAATACACTGGTCAATTATGTATGGTGATCCTATTTTTTCTTCAGAATTTTAATTTCTGTGTTCTCATTGCGAGGGGTATGGAATGACCTGTAAGTTGCATTTCAGATGGGCTGTTGGTCTCATCTAAAGCAAAAATAGCTTTTTAATTTTTGTTAGTTTAGATTACTTTGGTCAGAGGAAACTGTTTTTGGTAAACAATAATTCGCAATGGTCTTCTATTAGCAACAGATGTAACATTTAATGCTAATTTTGGACATGCTTAGGGCAATGGATGGATTTTGCCTAGTTACATCCCATAAATTGTAATTGTGGGGTCAGTCATGAAAATTTGTAGGTGGCTACAAATTTAAGGCAGCATTATCTTAGACGTGTTGTAAATCGTGTGTTAGGCAAGAAAATATAGTTGCGAAGTGGTGGATACTTTCAACTGGGTGAGATGTGAGTTTTAACATATACTGGGGGAAATCTGGATAGAATATGCTGGTACTCATAATAGAAGACTTTTCAATTCCTCAAGGGGTCCATTGTGAGCAGGATATCCCCTGTAGGTTTAGAAAGTGGTGACTTGCAATTTTCCGTCTTAAAATTTGTTACTATTTTTGAATTTACTTGCTATCCGCGACCTTTTGTTTTCATCTGGAAGATTTGTGTTGTTGTACTTCGGGTGGTATTACCGGGGTTAGGAAAAAGGACATGATGTAGTGGAGGAGGATCTCTTTGCTTGCTAATTTTTTATTTATTTATTTTTTGTGTGTGTGTTTGCAGCATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCAT-GGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGC</genome_strand>
        <mrna_strand>TACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATG..........................................................................................CAGCCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343896" ref_strand="+" ref_description="SGN-E343896 [cTOF-12-D6]">
      <seq>attagtgaagcaatggctatcttctgtcatgttagtggctgtgcaagagtgggatgaccacctgagttcattatcatctctgaggttgagcagtggggcacattcttcggagaaagctccaatcacacttagagctggaggtagctctctaaggatatcagatcctccaaccctgaagactaatgccgaacaaccagaatgcaagggagataaggttgatctatttttaaggcttggtttgttgcaacttgtctgtgaaattgaggggttgaccgtggaaacactacccgagactttgaaattgaatttctccagattgagagctgtccaggctatcctccagaaaatcattgttgtctgtactagcatattggttttgcggcagactcttcttgccgaatgcctggttagcagcccctcagagatggaagatatatcatcaaaatctattacaaagctgtttaagcttctggataacatggaggatgctggtattactgaagttgttgatacactgagcctttgcttagaaggtgatgagccaaagaagcttcaagcgaggaaggagatcatggcgaacgtgttggcaaagagcttgcgagcaggggatgccattttcactcgagtttcgcgcactgtttttttggcagcaaaagcaattttactttgcggaagtgtagctgagggtgggcaattggcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65019" stop="67242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65319" g_stop="65503" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65504" i_stop="65596" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65597" g_stop="65777" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="366" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66608" g_stop="66942" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="701" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E343896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65319" e_stop="65503"/>
          <exon e_start="65597" e_stop="65777"/>
          <exon e_start="66608" e_stop="66942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATGGTTAGTTACTTCAGTACTAAACTTAAGAATCACTCAGTTTTTTCTTGCTCAGTTTTTTCTTTTATCACATCTGGGAATCTTTTGTATCAGCAGCCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAGGTGCTGTTACTTTTCTTGGCTTTCTTCCAGCTCCTTTCTCATGCCTGCATATTTTGATGATGTGCAATACACTGGTCAATTATGTATGGTGATCCTATTTTTTCTTCAGAATTTTAATTTCTGTGTTCTCATTGCGAGGGGTATGGAATGACCTGTAAGTTGCATTTCAGATGGGCTGTTGGTCTCATCTAAAGCAAAAATAGCTTTTTAATTTTTGTTAGTTTAGATTACTTTGGTCAGAGGAAACTGTTTTTGGTAAACAATAATTCGCAATGGTCTTCTATTAGCAACAGATGTAACATTTAATGCTAATTTTGGACATGCTTAGGGCAATGGATGGATTTTGCCTAGTTACATCCCATAAATTGTAATTGTGGGGTCAGTCATGAAAATTTGTAGGTGGCTACAAATTTAAGGCAGCATTATCTTAGACGTGTTGTAAATCGTGTGTTAGGCAAGAAAATATAGTTGCGAAGTGGTGGATACTTTCAACTGGGTGAGATGTGAGTTTTAACATATACTGGGGGAAATCTGGATAGAATATGCTGGTACTCATAATAGAAGACTTTTCAATTCCTCAAGGGGTCCATTGTGAGCAGGATATCCCCTGTAGGTTTAGAAAGTGGTGACTTGCAATTTTCCGTCTTAAAATTTGTTACTATTTTTGAATTTACTTGCTATCCGCGACCTTTTGTTTTCATCTGGAAGATTTGTGTTGTTGTACTTCGGGTGGTATTACCGGGGTTAGGAAAAAGGACATGATGTAGTGGAGGAGGATCTCTTTGCTTGCTAATTTTTTATTTATTTATTTTTTGTGTGTGTGTTTGCAGCATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGG</genome_strand>
        <mrna_strand>ATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATG.............................................................................................CCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425991" ref_strand="-" ref_description="SGN-E425991 [STM-45-J22]">
      <seq>ttttaaggctcggtttgttgcaacttgtctgtgaaattgaggggttgacagtggaaacactaccggagactttgaaattgaatttctccagattgagagctgtccaggctttcctccagaaaatcattgtaatctgtactagcatattggttttgcggcagactcttcttgctgaatgcctggttaccaacccctcagagatagaagatatatcatcaaaatctattacaaagctgtttaagcttctggataacatggaggatgctggtattactgaagttgttgatacactgagcctttgcctagaaggtgatgagccaaagaagcttcaagcaaggaaggagatcatggtgaacgtgttggcaaagagcttgcgagcaggggatgccattttcactcgagtttcgcgcactgtttttttggcagcaaaagcaattttactttgcggaagcggagctgagggtaggcgattggcggagaacagcctgaaacgtgttggtgccagtctactcaccggaaagctggttgaggctatggaagatctgctggttgtggcaactgtgtcagccagagttcatggttcatggtatctagaggtgcttaaaaatatgagagccttgtagctagcttgttcaagaaattgtcagcttgcattcatacatgaatgtataggacgggaaagttgatattactatatgcaatataatgtattatgaaagaagtattgtttctaaatataagataaaaatcataagtttttgaaaaaaaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65336" stop="67523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65636" g_stop="65777" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66608" g_stop="67220" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="750" r_length="608" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E425991" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425991" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65636" e_stop="65777"/>
          <exon e_start="66608" e_stop="67220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAGGTGCTGTTACTTTTCTTGGCTTTCTTCCAGCTCCTTTCTCATGCCTGCATATTTTGATGATGTGCAATACACTGGTCAATTATGTATGGTGATCCTATTTTTTCTTCAGAATTTTAATTTCTGTGTTCTCATTGCGAGGGGTATGGAATGACCTGTAAGTTGCATTTCAGATGGGCTGTTGGTCTCATCTAAAGCAAAAATAGCTTTTTAATTTTTGTTAGTTTAGATTACTTTGGTCAGAGGAAACTGTTTTTGGTAAACAATAATTCGCAATGGTCTTCTATTAGCAACAGATGTAACATTTAATGCTAATTTTGGACATGCTTAGGGCAATGGATGGATTTTGCCTAGTTACATCCCATAAATTGTAATTGTGGGGTCAGTCATGAAAATTTGTAGGTGGCTACAAATTTAAGGCAGCATTATCTTAGACGTGTTGTAAATCGTGTGTTAGGCAAGAAAATATAGTTGCGAAGTGGTGGATACTTTCAACTGGGTGAGATGTGAGTTTTAACATATACTGGGGGAAATCTGGATAGAATATGCTGGTACTCATAATAGAAGACTTTTCAATTCCTCAAGGGGTCCATTGTGAGCAGGATATCCCCTGTAGGTTTAGAAAGTGGTGACTTGCAATTTTCCGTCTTAAAATTTGTTACTATTTTTGAATTTACTTGCTATCCGCGACCTTTTGTTTTCATCTGGAAGATTTGTGTTGTTGTACTTCGGGTGGTATTACCGGGGTTAGGAAAAAGGACATGATGTAGTGGAGGAGGATCTCTTTGCTTGCTAATTTTTTATTTATTTATTTTTTGTGTGTGTGTTTGCAGCATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATC</genome_strand>
        <mrna_strand>TTTTAAGGCTCGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACAGTGGAAACACTACCGGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTTTCCTCCAGAAAATCATTGTAATCTGTACTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGGTTTTGCGGCAGACTCTTCTTGCTGAATGCCTGGTTACCAACCCCTCAGAGATAGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCCTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCAAGGAAGGAGATCATGGTGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGCGGAGCTGAGGGTAGGCGATTGGCGGAGAACAGCCTGAAACGTGTTGGTGCCAGTCTACTCACCGGAAAGCTGGTTGAGGCTATGGAAGATCTGCTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATCTAGAGGTGCTTAAAAATATGAGAGCCTTGTAG--C-TA-GCTTGTTCAAGAAATTGTCAGCTTGCATTCATACATGAATGTATAGGACGGGAAAGTTGATATTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAA-GATAAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614251" ref_strand="+" ref_description="SGN-E614251 [64035]">
      <seq>cgtgatatagtggaggaggacctctttgcttgctaattttttttattttttcagtgggtgtgttttgcagcatattggttttgcggcagactcttcttgctgaatgcctggttaccaacccctcagagatagaagatatatcatcaaaatctattacaaagctgtttaagcttctggataacatggaggatgctggtattactgaagttgttgatacactgagcctttgcctagaaggtgatgagccaaagaagcttcaagcaaggaaggagatcatggtgaacgtgttggcaaagagcttgcgagcaggggatgccattttcactcgagtttcgcgcactgtttttttggcagcaaaagcaattttactttgcggaagcggagctgagggtaggcgattggcggagaacagcctgaaacgtgttggtgccagtctactcaccggaaagctggttgaggctatggaagatctgctggttgtggcaactgtgtcagccagagttcatggttcatggtatctagaggtgcttaaaactatgagagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66235" stop="67381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66535" g_stop="67082" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E614251" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66535" e_stop="67082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATGTAGTGGAGGAGGATCTCTTTGCTTGCTAATTTTTTATTTATTTATTTTTTGTGTGTGTGTTTGCAGCATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCT</genome_strand>
        <mrna_strand>CGTGATATAGTGGAGGAGGACCTCTTTGCTTGCTAA-TTTTT-TTTATTTTTTCAGTGGGTGTGT-TTTGCAGCATATTGGTTTTGCGGCAGACTCTTCTTGCTGAATGCCTGGTTACCAACCCCTCAGAGATAGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCCTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCAAGGAAGGAGATCATGGTGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGCGGAGCTGAGGGTAGGCGATTGGCGGAGAACAGCCTGAAACGTGTTGGTGCCAGTCTACTCACCGGAAAGCTGGTTGAGGCTATGGAAGATCTGCTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATCTAGAGGTGCTTAAAACTATGAGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303720" ref_strand="+" ref_description="SGN-E303720 [cLEY-7-O9]">
      <seq>atgagccaaagaagcttcaagcgaggaaggagatcatggcgaacgtgttggcaaagagcttgcgagcaggggatgccattttcactcgagtttcgcgcactgtttttttggcagcaaaagcaattttactttgcggaagtgtagctgagggtgggcaattggcggagaacaccctgaaacgtgttggtgccaatctactcactggaaagctggttgaggctatgaaagatctgttggttgtggcaactgtgtcagccagagttcatggttcatggtatgtagaggtgcttaaaaatatgagagctttatagcacacacacttgttcaagaaattgtcagcttgcattcttacatgaatgtataggacgggaaagttgatcttactatatgcaatataatgtattatgaaagaagtattgtttctaaatataataataaaaatcgtagccaagaacacgccaattatatgagcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66478" stop="67554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66778" g_stop="67262" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E303720" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66778" e_stop="67262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTATATTTCAAAT</genome_strand>
        <mrna_strand>ATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427529" ref_strand="-" ref_description="SGN-E427529 [STM-48-L3]">
      <seq>gagcttgcgagcaggggatgccattttcactcgagtttcgcgcactgtttttttggcagcaaaagcaattttactttgcggaagtggagctgagggtaggcgattggcggagaacagcctgaaacgtgtcggtgccggtctactcactggaaggctggttgaggctatggaagatctgctggttgtggcaactgtgtcagccagggttcatggttcatggtatctagaggtgcttaaaaatatgagagctttgtagcatacgcttgttcaagaaattgtcagcttgcattcatacatgaatgtataggacgggaaagagtatcttactatatgcaatataatgtattatgaaagactggtgagggtaaatataaaataaaaatcataattttagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66533" stop="73910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66833" g_stop="67220" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67221" i_stop="73585" i_length="6365">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73586" g_stop="73613" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="412" r_length="28" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E427529" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427529" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66833" e_stop="67220"/>
          <exon e_start="73586" e_stop="73613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTATATTTCAAATAATTTCAAAGAATGACCTAAAATGCCTTCAAACTATAAGATGTGATATAGTATTGCCCTCCGTCTAGTGTGAGCGGCTTAAATAGGGGTGTTTTTGAGCCAAATTTGTCGGATGAAAATATGGACAGAGATTAGTTTGTATCAATTCAAATAGGTGCGAATCAGTTTAAGCTCTTCTCTGATGAAACAATTAATTCACCTTATTAAAAAAAAAACATTCAATAAATAAGCAAAACGAGATATTTAATCCTAACTTTAATCGTAGAGTATTTTCATAAACAAGATTCAAATGAGTTCTTTAAAAAAAAAGATACATTTATTAAGAAAAAGATATTTTTGACCAGTAACAATATGGGGGATTTGGACCATATTATTTTAGCTGCGAAGACAGTTTTAGACTAAATTATTACTTGAGGGCCTTTTGGTTCAATTCCTCATGGTTTAAGTAAATTTTTATGTTTTTTTGTTTAAATAAAAAAAATGAATAAATAGAATAGAATACGTTGTTTTATTGTTGAAAATAGTAAGTTAAATAAAAATGAAAGTGTACTCGTGCATTCGTAAAATTATTCGGTTGCGTTCTATCTTTTTTTCTTTTCTTTTGTTCATATGAATAAATTGGTAATTACAATATATACTGTCAATAGTCTCTCCGTCGCTATACTCTATCGTTATGCTCTGTTCGCTAAAAGAATAATGATGGATTTCGATTCGGAGGCTGTTTGCATGGAATCTAACAAGGGGTCCATGGTATCGGGTTAGGAAGTCAATTTTCCATCTGGAAGGTTTGATTTGTTGAATCCATTTGAGGTTTTGCCTTGTTTGTTGCACTTTGGTGGTATTAGGAAAATGCACAACTACACTTGATCTATGTTCGAAATTTTAGAGATATATTTATACTATACTAATGTTCTATAACTCTAGACTTATTTTACAGATAATTTTTTACTGCTTTTAGTCTACGTGACACTATCTTTTGGGTTCAGCGCGTGTTGATAATTTTTTCAAGTTATATGATTGATGATGTCACGTAGGCCAAAAATAATAGAAAATTATTTATATTATAAGTTCCGGGGGAAGGGTAATATGACCTTAGTATAGTATAAGTGTGTCTCTTAAATTTTGGGCATAGGTTGAAGAATACTTATGCATTTTTCATAATTTATTTGAGTAAAGATTCTCTCGATAGTCAATACTATACAACTTGATGCAAAACACTGAAAAGAATTCTCAAACAATTTAAATATGTTATGAAAAATAATAAAATTTGACTCTATTGCATTAAAAAAAAATTTAAAAAAATATCAATTTAACTTTTAAAGTTAATTAACTATCTCTACTAATTATTATAAAATGTCCAATTAAAAATGAAAACACGTCCATATTAATGAGATTTTAATACCTTTTTGTATCTCACATGAACACTCTTTGTGTCACCTCAACACGAACGGATGCATTTATTACAGTTTAGAATAATTCAGGGGTAATAAGACTCCTGTATAATTAAGGTGTGTCCTTGAAATTTCGTGTATATCAAAGGAGGTATTATTTGTGCATTTTCCCTAAATTTTTAAAACTATAGCTATTTTCCATAAGTACGTTAGCATTTTTTGCCATTTTTCATTATTTTCCAATATCTCTAGTATTTGATAATTAGCCTATGACTTCTTTAAACTTATAATTATATTAAGGAAAACGGGTCAAAAATACCCTCAATTTTGGTTTATAGTCTGACTTTTCCTTCATCGTTAAAATGAAGTTGATTTTAACCCTTTCATTACTATTTTCATCAAAATTACCCCTCATTTGATGGAATTTCCAAAATTGCCGGGTCGGAATGGAGATCATTAATAAGGGTCGCATAATTGTAGATTTTCAATTGATCTTACTTAAATATCCTGCGCGGCTCAATGCATTTAAAAATGAGAAATTCATCTTATATCCCAAATTTGGGGCTTCATTTTTATAGTTTTAATAGAATTAATATAAGTATTTCTTAATAAAATAAATATTATATTGTGTCTTTTTTTAGTTTGTTCTGAAACATCAAAAAATATTTCTTTATTTTTTGTCAATCTTAAATTTAGATTCCACCTAACATGTTTAAGGCCATAAGATTAAAAAAAATAGTTTGATATATATGTATATATATAAATATATATCGTTAGTTTAACACCATAGAAAAAATAAAAGTTTTTCATTAAAAAATACTTTGAATGTCAATAAAAAAAAAGTTTCACCTTTGATTAAATTTTTTGGCTTTGGTCACTAATTGAGCTGTTACTAATTCTATTGATTAGTGTTTTAGTTTAGTTCCATAATAATTTGTTAGGTATGATTTGATTAATTTTTATGGAATAATTAGAACTCATTATAGTGAGAGTGTTTGTCCAAAAGTTCCATAATTGTTATAATAATGAGGTATTATTATACATGTACATTCAATGTTTAGATCTCATTTAACTTTTATAACTAATAATATATAAATAAAATTTTTTTAAATATATTGTTTAAAGAAAATTATGGTTATAGCTACACGGTTGTTGTTTATAAACATCACATTGTGTGATGTTTACAAGGATGAGTAACTTTATTGATATTGATATGGACACCGTGGGGGAGAAGAGGATGGTGACATAGTATTTTTTGATACTTTAGTTCACCCCGACGCAAGAAAAAAGAAGGTGAAAAATTTTACAGGTTTACAGGGGAAAACTTGAAACTTAGAAGTAGCAAGATAAGAGTATAATTTGTCGAGTAATCAAAATAAGGCTTTAATTATGGAATTCAAAAATAGCCTCTCTAATGACATGTAATTATTTAAAATTTATTAAATATAAATTTAAAAAATAATTTGGATTATATTAAATTTTGCAATATATTAGTTTAAATAAATATTATGAAATAATGTAATTGCATTAATTGTTTAAATATAATAAACATGAATTTAATTTAAGTCTACTTCATAAAACTCCGAAGGAATCATGTTGCTATGACAACTCCTATGTTCTAAAACTATAAATAGGGGTCCTCATAATTCACGAAAGAAACCAAGAATTCTAACAAGAAGTTAGTGTTGTAAAACTATAAATATGGGTCCTCATTATTCACAAGATAAGTCCTCATCATAAATCGAGTTTCAAGATCAAACTTGAAGCCCTTGAAATCATGTGAATCAAACTTGTAGCCCTTAAAATCAAGTATAAATTTGAGTTCAAAGCCTTAATTATATGTGAAAAGACAAATCTTTAATTATATCTGAAAAGATGAATTGGAGGAAATTGTAACACTCACATTTTGAAACTAATAAATACAATTGTTGTTATATGATTTTTCGGACTTTAGATTTTTATTTTCCTAACTCAAATTTTATTGTCGTCTTTGTCCTGGTAATGACAAGTGGCTCATGAAGGAATGACAAGTGGCTCACAAAGGAATACGGTTTTGTGAAGCTATTCTTAGAAAGCTCAGAAACTCTAAGTACAAATAGAGTTTTAATTAAAAAAAAAAAAACTATCATAATTATAAAAAACATATCTATAATGGTTTAAATATTTTCATAAAATGGTTGACACACAATTTGACAATAAAATCAAAACATTGCAAACTGATTTGGGCAGGGAATATCGTAATATCGTAATGTGTCTTCCTATGCCCAATCCATGGGAATAACCCATCGTCTATAGTGTCTTCACACTCGTGAACAAAATGGGGCTCTCGAAAGACGTAATCGTATGATTGTGGAAAAAGAACTAACTCTACTTGCTCACCTATGTCTTCCATATCAATATTGGGAACATGTTTTTTCCACAACCACATACCTACATAACCGCACCATCACTCCTATATTGTCTTTCAAATCTTCCTATCAAGCTCTATATCATCGTTCACCAGACTACCAATTTCATCGAAATTTGAGTGTCTATGTTATCATTTTCTCTGTCCTTATAATAATCATAAAATTGATTTTCGCTCTCTTCCTTGTATCTTCTTGGGTTATAGTTTGAAGCATAAAGGTTATCTGTGTTACTATCCACCCTCTAATCAAATGTATATTGCTCGTCATGTGACATTCGACGAAGAGAAATTTCCTTATCCTTATTACAAATCTACTGCCCCTTCCTCTAATGACAATTCACCACCCTCCCCCTTAACTTTTGTATAGTCGATTCCAACTTTGTTCCCTCCGTTGTTGGCGCACCTTCACTCGAAGATCCTTCACTGTCCACTCAATCCATACCAATATCGCTTCCTTCTATATCTTCTGATACAACCTCTTCACCACAAAATTCATGCCCGACCCCCGTCATATCCTCCACTTCAAGTTCTTATTAGAATGCTCCCACATATTTTTGGCTACCTCTTCCAATCATTCTATGACCACAAGAGCTCAAAAAAAATTCCCTCAATTCTAAAGCACTCACTCTCGCCATGCGATCCTGATTTCATCCTCCTTGGCCAGTGAACCAAAAACATATAAGCAAGCTGCATAATCTCCTGATTGATTGTACGCCATGGAAGTTGAATATCAAGCATTATTCATAATCACACATGGAAACTCTCTCCTTTCCTCTTAATGCAAATGTGATGGGTTGTAAATGGGTGTACCACATTAAGCATCATGAAGATGGGTCGATTGAAAGTTACAAAGCTCGTTGGATGGCCAAAGGTTTTCATCAGGCAGAAGGGGTTGTTTCCATGTTACATTCAGCCCAGTTGTCAAACCTTCAACAATCAGACTTGTATTATCTTATGCAGTGTCCAAGATTGGTGTCTTAAACAGTTAGATGTTAATAATGCATTCCTTAATGGTGAACTTTCGGAGGTTGTTTATGCCTCAACCACCAGGCTTTACTGATAAGTCTCACCCATATTTTGTGTGTCGCTTGTCAAAGGCTTTACACCGTCTAAAGCAAGCTTCTCGCGCCTGATTTCTCAAGCTCAAAACATTTCTCCTATCGCATGACTATACTTGTTGTTACTCTGATTCATCCTTGTTTGTCCATCATACTCCTTCCTCTGCTACATACCTCTTGGTTTATGTGGACGGCATCATCATAACGGGTAATGATCCCTCTTATATCTCCTACTTCACCAAACCCTTTGATCTTCAGTTCTCTATAAAAGACTTTGGTGATCTCTCATTTTTCTTGTGTATTGAAGTTGCTCGTGTGGGATCTGGTTTGCATCTTTCTCAAGCTAGCTTCATTCGAGACTTACTCTTCGAACAAAAATGACAGATTGTAAGTCTTCTCCTTCTCCAGCAGATAGTGTTGACATCCTCGTGAAAGGGCGCAACATAGTTGTGACTTATTAAAAAAAAAGTAATTAGTTAAGTCAGTTTTTAAAAGAATAAAAAGAAATTTTAAAAGAGAAGGAAACTTAAAAGGGGTTGAAAAGGGTTTGAATTGAGTCGTCGCCTAAGTTTTAGAAAAATTAGGAAATCTATTAATTAATGGACTTGAAGTCTACAAAATCAATTGATCTGATAAGAGGTTCAAGTTATTTCGAAAGGAAGGCGTTAGACATCCTTCGAAATTCATAAATGTGGGTCCCATCTTAATTCATTTTTCAAATTGAGAAGGAGAATTAAATAATGTACAAGTATAATAAACATGTAATATACACAAGTAATAAAATAAGACAATACAAGAAACGGCCTAAAGTTTGTCTAACGTCAATATATACAAAATGAATAAAGAGTATAATTCAAACTTAATTCGAATAGCTTCAGCGGGAAACAACTGCGAATACATGTAAAGACACTTAGTAAAAGTGTTAGTAATAAATAAATATGAGTAAAAATAAATGAATCAAACTATAACTTAAAAATTAAAAATCCAGTCTTATTAACATGGGATACCTTAGAAATCGACAGTGATTTCTTCATCGTCCATTTTTAACAAACAAAATTATGAACTTAGATTAAATTTATGTCTTTTAACATTGAGGAAACCTCCAAATCGACGAAGAAATTTTCTCATTTTCAACTTTTAACATATATGAACCTAAACATAGTGAAAATTATCAGAAACAATACTTAAACAGAAGATGGCAAAACAATCCAAACTAATTCCTAAAAAAATAATGATGATAAAGCAATAAATAGACAAATGTACAAAATAAAATATAAAACAAAATTCACAAATGCGCTAAACTACCAACAGTCTTTTAACTCAAAACAAATCAATAAAATTACATCAAGACAACAAACAACGATAAAGATAAACATAATCAATAAGAAATTAGTCAAATCAATAATCAATGAGAAGAAATAGTAAAGAACAAAATCAATGCTAGGCTACCAAAGACTCGTAAAAACACACAATTTTAGAAAAAAAAAAACAAATTA</genome_strand>
        <mrna_strand>GAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGGAGCTGAGGGTAGGCGATTGGCGGAGAACAGCCTGAAACGTGTCGGTGCCGGTCTACTCACTGGAAGGCTGGTTGAGGCTATGGAAGATCTGCTGGTTGTGGCAACTGTGTCAGCCAGGGTTCATGGTTCATGGTATCTAGAGGTGCTTAAAAATATGAGAGCTTTGTAG--CATACGCTTGTTCAAGAAATTGTCAGCTTGCATTCATACATGAATGTATAGGACGGGAAAGAGTATCTTACTATATGCAATATAATGTATTATGAAAG-ACTGGTGAGGGTAAATATAA-AATAAAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTTAGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601636" ref_strand="+" ref_description="SGN-E601636 [54680]">
      <seq>gcggaaagctggttgaggctatggaagatctgctggttgtggcaactgtgtcagccagagttcatggttcatggtatctagaggtgcttaaaaatatgagagccttgtagctagcttgttcaagaaattgtcagcttgcattcatacatgaatgtataggacgggaaagttgatattactatatgcaatataatgtattatgaaagaagtattgtctctaaatataaaataaaaatcataagtttttagaggaacaaggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66681" stop="67523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66979" g_stop="67220" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E601636" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66979" e_stop="67220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATC</genome_strand>
        <mrna_strand>GCGGAAAGCTGGTTGAGGCTATGGAAGATCTGCTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATCTAGAGGTGCTTAAAAATATGAGAGCCTTGTAG--C-TA-GCTTGTTCAAGAAATTGTCAGCTTGCATTCATACATGAATGTATAGGACGGGAAAGTTGATATTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTCTCTAAATATAA-AATAAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392576" ref_strand="+" ref_description="SGN-E392576 [TUS-35-B1](-)">
      <seq>tgtcaaaacttgagaaggttcaaaaaacttatcatgtaacagtggttagaagctttaagtcgcacatatatttttgttctaatgtatgtaaaaaatataattagatccaaagtgcatatgaacttaaacaattatttgtttaatcaaatatgctgcattagtatatttatcagatcaacattaaagttgcctaatgcatgtaatacttttaatctttatatttgaattagatgtcgttgaattaaattaattagatttccttttgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77033" stop="76167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76733" g_stop="76482" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="268" polyA_stop="280"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E392576" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76733" e_stop="76482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAAAACATGAGAAGGTTCA-AAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTG-TCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCATGTAATACTTTTAATCTTTATATTTGAATTAGATGTCGTTGAATTAAATTAATTAG</genome_strand>
        <mrna_strand>TGTCAAAACTTGAGAAGGTTCAAAAAACTTATCATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGCATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCATGTAATACTTTTAATCTTTATATTTGAATTAGATGTCGTTGAATTAAATTAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538659" ref_strand="+" ref_description="SGN-E538659 [TUS-58-A8](-)">
      <seq>tccttatttcgtatcatagaataagaatctatactaaaaaaatatttgtgaggttataattagcatatactcttagtcatggatacactataagcttccacaaatgttacatctaatatgtatgtgacaaaggatcaattgtacatgtaatggtaagtcccaaatcttacaaattatatcagagacaattaaattttgcccttaattagcagtaaacactcgagaaaagttattttgataccatcatctttatattggcatttgtgatatagcttaatatccaatggcactatcatgatagctaatttatgtcttcctttcctcatattacttgccactggactcgctaatgggttcaaagattaattgacaattaaaatcctcattgtggtccatttaaatctaaagagtatgcaagagtgctatggtttgtgatgttactttttgaaaattgtatcttgattaatgtgttttactttattattatccagtttgttcaagttgtgtgatatatttaggtggcatgctttcgatttttagccctcaaaagaagatggttgtgttattcttcaaaatatagaatcagattttgttatcttgagtcaattgaagcaagtttccaaggtggaaattggaaataatctgtcaaaacatgagaaggttcaaaaacttattatgtaacagtggttagaagctttaagtcgcacatatatttttgtctaatgtatgtaaaaaatataattagatccaaagtgtatatgaacttaaacaattatttgtttaatcaaatatgctgcattagtatatttatcagatcaacattaaagttgcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77676" stop="76242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77376" g_stop="76537" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E538659" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77376" e_stop="76537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCAT</genome_strand>
        <mrna_strand>TCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538657" ref_strand="+" ref_description="SGN-E538657 [TUS-58-A7](-)">
      <seq>catagaataagaatctatactaaaaaaatatttgtgaggttataattagcatatactcttagtcatggatacactataagcttccacaaatgttacatctaatatgtatgtgacaaaggatcaattgtacatgtaatggtaagtcccaaatcttacaaattatatcagagacaattaaattttgcccttaattagcagtaaacactcgagaaaagttattttgataccatcatctttatattggcatttgtgatatagcttaatatccaatggcactatcatgatagctaatttatgtcttcctttcctcatattacttgccactggactcgctaatgggttcaaagattaattgacaattaaaatcctcattgtggtccatttaaatctaaagagtatgcaagagtgctatggtttgtgatgttactttttgaaaattgtatcttgattaatgtgttttactttattattatccagtttgttcaagttgtgtgatatatttaggtggcatgctttcgatttttagccctcaaaagaagatggttgtgttattcttcaaaatatagaatcagattttgttatcttgagtcaattgaagcaagtttccaaggtggaaattggaaataatctgtcaaaacatgagaaggttcaaaaacttattatgtaacagtggttagaagctttaagtcgcacatatatttttgtctaatgtatgtaaaaaatataattagatccaaagtgtatatgaacttaaacaattatttgtttaatcaaatatgctgcattagtatatttatcagatcaacattaaagttgcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77662" stop="76242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77362" g_stop="76537" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E538657" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77362" e_stop="76537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCAT</genome_strand>
        <mrna_strand>CATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375538" ref_strand="+" ref_description="SGN-E375538 [TUS-34-F2](-)">
      <seq>agcttccacaaatgttacatctaatatgtatgtgacaaaggatcaattgtacatgtaatggtaagtcccaaatcttacaaattatatcagagacaattaaattttgcccttaattagcagtaaacactcgagaaaagttattttgataccatcatctttatattggcatttgtgatatagcttaatatccaatggcactatcatgatagctaatttatgtcttcctttcctcatattacttgccactggactcgctaatgggttcaaagattaattgacaattaaaatcctcattgtggtccatttaaatctaaagagtatgcaagagtgctatggtttgtgatgttactttttgaaaattgtatcttgattaatgtgttttactttattattatccagtttgttcaagttgtgtgatatatttaggtggcatgctttcgatttttagccctcaaaagaagatggttgtgttattcttcaaaatatagaatcagattttgttatcttgagtcaattgaagcaagtttccaaggtggaaattggaaataatctgtcaaaacatgagaaggttcaaaaacttattatgtaacagtggttagaagctttaagtcgcacatatatttttgtctaatgtatgtaaaaaatataattagatccaaagtgtatatgaacttaaacaattatttgtttaatcaaatatgctgcattagtatatttatcagatcaacattaaagttgcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77584" stop="76242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77284" g_stop="76537" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E375538" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77284" e_stop="76537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCAT</genome_strand>
        <mrna_strand>AGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375438" ref_strand="+" ref_description="SGN-E375438 [TUS-34-D2](-)">
      <seq>tacatctaatatgtatgtgacaaaggatcaattgtacatgtaatggtaagtcccaaatcttacaaattatatcagagacaattaaattttgcccttaattagcagtaaacactcgagaaaagttattttgataccatcatctttatattggcatttgtgatatagcttaatatccaatggcactatcatgatagctaatttatgtcttcctttcctcatattacttgccactggactcgctaatgggttcaaagattaattgacaattaaaatcctcattgtggtccatttaaatctaaagagtatgcaagagtgctatggtttgtgatgttactttttgaaaattgtatcttgattaatgtgttttactttattattatccagtttgttcaagttgtgtgatatatttaggtggcatgctttcgatttttagccctcaaaagaagatggttgtgttattcttcaaaatatagaatcagattttgttatcttgagtcaattgaagcaagtttccaaggtggaaattggaaataatctgtcaaaacatgagaaggttcaaaaacttattatgtaacagtggttagaagctttaagtcgcacatatatttttgtctaatgtatgtaaaaaatataattagatccaaagtgtatatgaacttaaacaattatttgtttaatcaaatatgctgcattagtatatttatcagatcaacattaaagttgcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77569" stop="76242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77269" g_stop="76537" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E375438" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77269" e_stop="76537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCAT</genome_strand>
        <mrna_strand>TACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538666" ref_strand="+" ref_description="SGN-E538666 [TUS-58-A12](-)">
      <seq>aatgggttcaaagattaattgacaattaaaatcctcattgtggtccatttaaatctaaagagtatgcaagagtgctatggtttgtgatgttactttttgaaaattgtatcttgattaatgtgttttactttattattatccagtttgttcaagttgtgtgatatatttaggtggcatgctttcgatttttagccctcaaaagaagatggttgtgttattcttcaaaatatagaatcagattttgttatcttgagtcaattgaagcaagtttccaaggtggaaattggaaataatctgtcaaaacatgagaaggttcaaaaacttattatgtaacagtggttagaagctttaagtcgcacatatatttttgtctaatgtatgtaaaaaatataattagatccaaagtgtatatgaacttaaacaattatttgtttaatcaaatatgctgcattagtatattgatcagatcaacattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77328" stop="76251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77028" g_stop="76551" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E538666" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77028" e_stop="76551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAA</genome_strand>
        <mrna_strand>AATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTGATCAGATCAACATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538671" ref_strand="+" ref_description="SGN-E538671 [TUS-58-A15](-)">
      <seq>tggtccatttaaatctaaagagtatgcaagagtgctatggtttgtgttgttactttttgaaaattgtatcttgattaatgtcttttactttattattatccagtttgttcaagttgtgtgatatatttaggtggcatgctttcgatttttagccctcaaaagaagatggttgtgttattcttcaaaatatagaatcagattttgttatcttgagtcaattgaagcaagtttccaaggtggaaattggaaataatctgtcaaaacatgagaaggttcaaaaacttattatgtaacagtggttagaagctttaagtcgcacatatatttttgtctaatgtatgtaaaaaatataattagatccaaagtgtatatgaacttaaacaattatttgtttaatcaaatatgctgcattagtattttatcagatcancattaaagtctccctttaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77288" stop="76244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76988" g_stop="76551" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E538671" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76988" e_stop="76551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAA</genome_strand>
        <mrna_strand>TGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGTTGTTACTTTTTGAAAATTGTATCTTGATTAATGTCTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTAT-TTTATCAGATCANCATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394991" ref_strand="+" ref_description="SGN-E394991 [TUS-34-K14]">
      <seq>ttttttttctcttctttactcattaataattagaaattgaatttgtatttgaactgcagttagctttaaactcagtaagaactacattgaggtacaatgtaccatataaagtcggggtttcttgattgacatacgacaaatggagagctctgactatgcatcggtctctcaccaaaaaggtatggtaacctcaaaaaaactttccttgaatctgaagacgagagtacttcaataaggaaatttgtgaggagcctgttggccaagaccatcaataggttttgattgaacaaccaatatatagtcattcttgattatatccattaatttccttatttcgtatcatagaataagaatctatactaaaaaaaaatatttgtgaggttataattagcatatactcttagtcatggatacactataagcttccacaaatgttacatctaatatgtatgtgacaaaggatcaattgtacatgtaatggtaagtcccaaatcttacaaattatatcagagacaattaaattttgcccttaattagcagtaaacactcgagaaaagttattttgataccatcatctttatattggcatttgtgatatagcttaatatccaatggcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78001" stop="76785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77701" g_stop="77085" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E394991" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77701" e_stop="77085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTCTTCTTTACTCATTAATAATTAGACATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGA-AACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACT--AAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTA</genome_strand>
        <mrna_strand>TTTTTTTTCTCTTCTTTACTCATTAATAATTAGAAATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTACCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAGTACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATCAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCCATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248387" ref_strand="+" ref_description="SGN-E248387 [cLEG-1-O7]">
      <seq>ttttttctcttctttactcattaataattagaaattgtattactgtttttactgcagttagctctaaactcagtaagaactacattgaggtacaatgtaccatataaagtcggggtttcttgattgacatacgacaaatggagagctctgactatgcatcggtctctcaccaaaaaggtatggtaacctcaaaaaaactttccttgaatctgaagacgagagtacttcaataaggaaatttgtgaggagcctgttggccaagaccatcaataggttttgattgaacaaccaatatatagtcattcttgattatatccattaatttccttatttcgtatcatagaataagaatctatactaaaaaaaaatatttgtgaggttataattagcatatactcttagtcatggatacactataagcttccacaaatgttacatctaatatgtatgtgacaaaggatcaattgtacatgtaatggtaagtcccaaatcttacaaattatatcagagacaattaaattttgcccttaattagcagtaaacactcgagaaaagttattttgataccatcatctttatattggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77999" stop="76817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77699" g_stop="77117" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E248387" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77699" e_stop="77117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCTTCTTTACTCATTAATAATTAGACATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGA-AACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACT--AAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCA</genome_strand>
        <mrna_strand>TTTTTTCTCTTCTTTACTCATTAATAATTAGAAATTGTATTACTGTTTTTACTGCAGTTAGCTCTAAACTCAGTAAGAACTACATTGAGGTACAATGTACCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAGTACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATCAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCCATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712187" ref_strand="+" ref_description="SGN-E712187 [FB04AF04]">
      <seq>aactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggctaggcagataaaattcttgatatgactattcctgctgaaggaccatattgcattcaaacgttgcatgaacggattgaatttgttggttagattatctcatgaaattttcctctcctcgtgttctcttggaagatgagccctactttcacttgtggcagaaatatcgtgttaaaaatgctgagcagacccctttaactacactctatgtagaaaatctgttgcaggagatagcatcaaaattttctcttttattgcccaaaagagtcgttttgcacattagctttaaactcagtaagaactacattgaggtacaatgtatcatataaagtcggggtttcttgattgacatacgacaaatggagagctctgactatgcatcggtctctcaccaaaaaggtatggtaacctcaaaaaaactttccttgaatctgaagacgagaaacttcaataaggaaatttgtgaggagcctgttggccaagaccattaataggttttgattgaacaaccaatatatagtcattcttgattatatctattaatttccttatttcgtatcatagaataagaatctatactaaaaaaatatttgtgaggttataattagcatatactcttagtcatggatacactataagcttccacaaatgttacatctaatatgtatgtgacaaaggatcaattgtacatgtaatggtaagtcccaaatcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79367" stop="76907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79067" g_stop="78949" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78948" i_stop="78873" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78872" g_stop="78595" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="397" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78594" i_stop="77643" i_length="952">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77642" g_stop="77207" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="833" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E712187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79067" e_stop="78949"/>
          <exon e_start="78872" e_stop="78595"/>
          <exon e_start="77642" e_stop="77207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTTTGGTATCGTATCTGAGTGAAAGAATATGTTTTTTTTCTTTTCAATTCTAGAAAAAATATTCCACAACAGTTGAAGTTTTTTATTGCTTCTTATTAAACAATAACATATTCAGTGTAATTTGATGAGTGGTGATTGGGGAGGATAGTGTATACGCAACCTTATATAAGTTCGATAATATGTTATTTGAAATTAATTCTTGATTCTTGAATATATGATTTAAGTATGAACTTGAAAGCAAAGAATCAATGCTTATTCAAGAGAAGGGAACTGTTAAATGAATAACTATTAAGTTGATATGCCGGATTACTACTAAAAAGATATGCTCCTCTTTATCACTAAAGATCACAACTTTTTTCATCGGTTAATTTTAGCACTTTTTTAAAAGATATATTATGGATCTTTTAATACAATCTGTTTGTTCTTGTAATTTTTGAACTATATAACCCAAAGATAAATGGATTATCCCTCACCTCTTCCAATTCCATGGATATTTGTTGTCATTCCCATACCTTGAGAAGGTATATGAGCCTTATACTCATGGTTGTGTCCGTGAGCTTACAACTGTCTGAAGAAGTTGGCTTATGTCTGTTTCTTATAGAGCAACCATATTTGAGTAGATCTTATTGAATCCTGATGGTTGAGTTGTCAAGAGGCCACAGTTCATATTGTTATGAGTTAGGTCAATTCATTTCTTCACCGTCGTCTCCTCAAAACTCCTCCGCTCTTCTGCTATTTCTATTTCAATAATAGATGTAGATATTGAAAATTCAAGTTCATTTATTTTCCACCTCTCTCTCTCTGGTTTATGTTATGTATGCATTTATCAACTTTATTTTTTCAAGTTTACCTATTCTAATTTACGATAGCTATCTTTTTTTTTTCTTCTTTACTCATTAATAATTAGACATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAAACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTAC</genome_strand>
        <mrna_strand>AACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTG............................................................................GCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAAACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392577" ref_strand="+" ref_description="SGN-E392577 [TUS-35-B1]">
      <seq>tcaagaggccacagttcatattgttatgagttaggtctattcatttcgtctcctcaaaactcctctgctcttctgctatttctatttcaataatagatgtagatattgaaaattcaagttcatttattttccacctctctctctctcgtttatgttatgtatgcatttatcaactttattttttcaagtttacctattctaatttacgatagctatcttttttttctcttctttactcattaataattagaaattgaatttgtatttgaactgcagttagctttaaactcagtaagaactacattgaggtacaatgtaccatataaagtcggggtttcttgattgacatacgacaaatggagagctctgactatgcatcggtctctcaccaaaaaggtatggtaacctcaaaaaaactttccttgaatctgaagacgagagtacttcaataaggaaatttgtgaggagcctgttggccaagaccatcaataggttttgattgaacaaccaatatatagtcattcttgattatatccattaatttccttatttcgtatcatagaataagaatctatactaaaaaaaaatatttgtgaggttataattagcatatactcttagtcatggatacactataagcttccacaaatgttacatctaatatgtatgtgacaaaggatcaattgtacatgtaatggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78227" stop="76922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77927" g_stop="77222" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E392577" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77927" e_stop="77222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGGCCACAGTTCATATTGTTATGAGTTAGGTCAATTCATTTCTTCACCGTCGTCTCCTCAAAACTCCTCCGCTCTTCTGCTATTTCTATTTCAATAATAGATGTAGATATTGAAAATTCAAGTTCATTTATTTTCCACCTCTCTCTCTCTGGTTTATGTTATGTATGCATTTATCAACTTTATTTTTTCAAGTTTACCTATTCTAATTTACGATAGCTATCTTTTTTTTTTCTTCTTTACTCATTAATAATTAGACATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGA-AACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACT--AAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTA</genome_strand>
        <mrna_strand>TCAAGAGGCCACAGTTCATATTGTTATGAGTTAGGTCTATTCA----TT-----TCGTCTCCTCAAAACTCCTCTGCTCTTCTGCTATTTCTATTTCAATAATAGATGTAGATATTGAAAATTCAAGTTCATTTATTTTCCACCTCTCTCTCTCTCGTTTATGTTATGTATGCATTTATCAACTTTATTTTTTCAAGTTTACCTATTCTAATTTACGATAGCTATCTTTTTTTTCTCTTCTTTACTCATTAATAATTAGAAATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTACCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAGTACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATCAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCCATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273760" ref_strand="+" ref_description="SGN-E273760 [cLEN-7-O10]">
      <seq>caagaggccacagttcatattgttatgagttaggtctattcgtttcgtctcctcaaaactcctctgctcttctgctatttctatttcaataatagatgtagatattgaaaattcaagttcatttattttccacctctctctctctcgtttatgttatgtatgcatttatcaactttattttttcaagtttacctattctaatttacgatagctatcttttttttctcttctttactcattaataattagaaattgaatttgtatttgaactgcagttagctttaaactcagtaagaactacattgaggtacaatgtaccatataaagtcggggtttcttgattgacatacgacaaatggagagctctgactatgcatcggtctctcaccaaaaaggtatggtaacctcaaaaaaactttccttgaatctgaagacgagagtacttcaataaggaaatttgtgaggagcctgttggccaagaccatcaataggttttgattgaacaaccaatatatagtcattcttgattatatccattaatttccttatttcgtatcatagaataagaatctatactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78226" stop="77033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77926" g_stop="77333" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E273760" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77926" e_stop="77333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGGCCACAGTTCATATTGTTATGAGTTAGGTCAATTCATTTCTTCACCGTCGTCTCCTCAAAACTCCTCCGCTCTTCTGCTATTTCTATTTCAATAATAGATGTAGATATTGAAAATTCAAGTTCATTTATTTTCCACCTCTCTCTCTCTGGTTTATGTTATGTATGCATTTATCAACTTTATTTTTTCAAGTTTACCTATTCTAATTTACGATAGCTATCTTTTTTTTTTCTTCTTTACTCATTAATAATTAGACATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGA-AACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAATA</genome_strand>
        <mrna_strand>CAAGAGGCCACAGTTCATATTGTTATGAGTTAGGTCTATTC--GT-TT---CGT---CTCCTCAAAACTCCTCTGCTCTTCTGCTATTTCTATTTCAATAATAGATGTAGATATTGAAAATTCAAGTTCATTTATTTTCCACCTCTCTCTCTCTCGTTTATGTTATGTATGCATTTATCAACTTTATTTTTTCAAGTTTACCTATTCTAATTTACGATAGCTATCTTTTTTTTCTCTTCTTTACTCATTAATAATTAGAAATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTACCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAGTACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATCAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCCATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247757" ref_strand="+" ref_description="SGN-E247757 [cLEF-42-N11]">
      <seq>caaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggtaagtaataagttcaactagaaagaaagtctatcatcaattatttcttctccctgaaaaaaaattatttctacaggctaggtagataaaattcttgatatgactattcctgctgaaggaccatattgtattcaaacgttgcatgaactgattgaatttgttggttagattatctcatgaaattttgctctcctcgtgttctcttggaagatgagccctactttcacttgtggcagaaatatcgtgttaaaaatgctgagcagacccctttaactacactctatgtagaaaatctgttgcaggaggtagcatcaaaattttctcttttattgcccaaaagagtcgttttgcacagtaagtcaagtttcagtttttctggtatcgtatctgagtgaaagaatatgtttttttcttttcaattttagaaaaaatatttcacaacagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79390" stop="78198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79090" g_stop="78498" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E247757" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79090" e_stop="78498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTTTGGTATCGTATCTGAGTGAAAGAATATGTTTTTTTTCTTTTCAATTCTAGAAAAAATATTCCACAACAGTTGAAG</genome_strand>
        <mrna_strand>CAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAGTTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGTAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGTATTCAAACGTTGCATGAACTGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTGCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGGTAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTCTGGTATCGTATCTGAGTGAAAGAATATG-TTTTTTTCTTTTCAATTTTAGAAAAAATATTTCACAACAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391755" ref_strand="+" ref_description="SGN-E391755 [TUS-24-I2]">
      <seq>tcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggtaagtaataagttcaactagaaagaaagtctatcatcaattatttcttctccctgaaaaaaaattatttctacaggctaggtagataaaattcttgatatgactattcctgctgaaggaccatattgtattcaaacgttgcatgaactgattgaatttgttggttagattatctcatgaaattttgctctcctcgtgttctcttggaagatgagccctactttcacttgtggcagaaatatcgtgttaaaaatgctgagcagacccctttaactacactctatgtagaaaatctgttgcaggaggtagcatcaaaattttctcttttattgcccaaaagagtcgttttgcacagtaagtcaagtttcagtttttctggtatcgtatctgagtgaaagaatatgtttttttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79391" stop="78232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79091" g_stop="78532" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E391755" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79091" e_stop="78532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTTTGGTATCGTATCTGAGTGAAAGAATATGTTTTTTTTCTTTT</genome_strand>
        <mrna_strand>TCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAGTTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGTAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGTATTCAAACGTTGCATGAACTGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTGCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGGTAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTCTGGTATCGTATCTGAGTGAAAGAATATGTTTTTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321871" ref_strand="+" ref_description="SGN-E321871 [cTOB-29-O21]">
      <seq>tctttgatttttcatcggtacaaattagttttctctctaaatattttcctaatcttgttttggcagtgttcaaaattttcagtaagtagcttgtgccataggcatacaaagcgagaggttgtatctgctagctcaagctaacatatttcgccaaagtagataacatcaattttccgagttgggatttcaaatactgcttttcaaatctcaagaatgttaaaattatcggctgcctttatgacatggttggaggcgtggtctgaagcagagttttgaaaggtcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggtaagtaataagttcaactagaaagaaagtctatcatcaattatttcttctccctgaaaaaaaattatttctacaggctaggtagataaaattcttgatatgactattcctgctgaaggaccatattgtattcaaacgttgcatgaactgattgaatttgttggttagattatctcatgaaattttgctctcctcgtgttctcttggaagatgagccctactttcacttgtggcagaaatatcgtgttaaaaatgctgagcagacccctttaactacactctatgtagaaaatctgttgcaggaggtagcatcaaaattttctcttttattgcccaaaagagtcgttttgcacagtaagtcaagtttcagtttttctggtatcgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80872" stop="78261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80572" g_stop="80458" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80336" g_stop="80180" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="274" r_length="159" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082">
            <donor d_prob="0.409" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79097" g_stop="78561" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="811" r_length="537" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E321871" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80572" e_stop="80458"/>
          <exon e_start="80336" e_stop="80180"/>
          <exon e_start="79097" e_stop="78561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAGGTAAGTTTTTTCTCCTATATGGTGAAAAATTCGCATCTACAAATGTTCATATGCTATTATTAAAATAAGTTTCAAGCTTTTTCTTTATAGATGTTTGAACTTATTGGACCATGATTTGCAGAGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTC-AATCTCAAGAATGTTAAAATTATCGGTTGCC-TTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTTGTAAGCTTTTCGAACCTTTGAGGTTTATATTAAAGAATACAGTGATTTTGCAAAAGTTTGTTATCATAACAATTAAACAAGTGTGCGTTCCGGCATTCATAACGATTGACTAAGAAATTGTTAGACAGTAAAAAATCATCAACAAATTTCGTGATTGTTTATCAAGAGATTGCTTAGCCAACCATTATAAATAATCACGAAATTTGTTGTAGTGTTTCTAGCCGCTGCAACAAATACATATTTATCAACAAAATATAAGGTGTATCTAGCGATTAAGAGTTGCTTTTTGTAGTAGTGTTCTTATTAGGATCATTATGTATGAACTACAACTGAGTTAGAGTTGAGTTTTGATAAGAAAAGTTGGAAGTTGTGGGCATGCTAATTGAAAAACCGCAAGTATCGACTATCGTGAAACAAGCACTTGATAGTTGATCCTGATCTTGTGGGGTTGGTCTTAAATATCTCAGGGTACTTAGTCTATAAGATGGATTCAATAGTTTTTTCTACTGTGGAAATATTGAGAACAGATTTATTCACAACTCTTTTTGGACTTGGATATTGGGCAAACATCCATAGTTTCTAGCACTATTTGAGTATCTGACTGTCCAAATGGTTGCTGGATTATTCCAATCCTCTGGATGTCCTGCAGTAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTTTGGTATCGTATC</genome_strand>
        <mrna_strand>TCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGCAGTGTTCAAAATTTTCAGTAAGTAGCTTGTGCCATAGGCATACAAAGCGAG.........................................................................................................................AGGTTGTATCTGCTAGCTCAAGCTAACATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATACTGCTTTTCAAATCTCAAGAATGTTAAAATTATCGGCTGCCTTTATGACATGGTTGGAGGCGTGGTCTGAAGCAGAGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAGTTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGTAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGTATTCAAACGTTGCATGAACTGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTGCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGGTAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTCTGGTATCGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375539" ref_strand="+" ref_description="SGN-E375539 [TUS-34-F2]">
      <seq>tcggtacaaattagttttctctctaaatattttcctaatcttgttttggtagtgttcaaaattttcagtaagtaccttgtgccataggcatacaaagcgagaggttgtatctgctagctcaagctaagatatttcgccaaagtagataacatcaattttccgagttgggatttcaaataatgcttttcaatctcaagaatgttaaaattatcggttgccttatgacatggttggaggcgtggtctgaaagagagttttgaaaggtcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggctaggcagataaaattcttgatatgactattcctgctgaaggaccatattgcattcaaacgttgcatgaacggattgaatttgttggttagattatctcatgaaattttcctctcctcgtgttctcttggaagatgagccctactttcacttgtggcagaaatatcgtgttaaaaatgctgagcagacccctttaactacactctatgtagaaaatctgttgcaggagatagcatcaaaattttctcttttattgcccaaaagagtcgttttgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80858" stop="78296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80558" g_stop="80458" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80336" g_stop="80180" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="258" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79097" g_stop="78949" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="407" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78948" i_stop="78873" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78872" g_stop="78596" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="684" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E375539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80558" e_stop="80458"/>
          <exon e_start="80336" e_stop="80180"/>
          <exon e_start="79097" e_stop="78949"/>
          <exon e_start="78872" e_stop="78596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAGGTAAGTTTTTTCTCCTATATGGTGAAAAATTCGCATCTACAAATGTTCATATGCTATTATTAAAATAAGTTTCAAGCTTTTTCTTTATAGATGTTTGAACTTATTGGACCATGATTTGCAGAGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTTGTAAGCTTTTCGAACCTTTGAGGTTTATATTAAAGAATACAGTGATTTTGCAAAAGTTTGTTATCATAACAATTAAACAAGTGTGCGTTCCGGCATTCATAACGATTGACTAAGAAATTGTTAGACAGTAAAAAATCATCAACAAATTTCGTGATTGTTTATCAAGAGATTGCTTAGCCAACCATTATAAATAATCACGAAATTTGTTGTAGTGTTTCTAGCCGCTGCAACAAATACATATTTATCAACAAAATATAAGGTGTATCTAGCGATTAAGAGTTGCTTTTTGTAGTAGTGTTCTTATTAGGATCATTATGTATGAACTACAACTGAGTTAGAGTTGAGTTTTGATAAGAAAAGTTGGAAGTTGTGGGCATGCTAATTGAAAAACCGCAAGTATCGACTATCGTGAAACAAGCACTTGATAGTTGATCCTGATCTTGTGGGGTTGGTCTTAAATATCTCAGGGTACTTAGTCTATAAGATGGATTCAATAGTTTTTTCTACTGTGGAAATATTGAGAACAGATTTATTCACAACTCTTTTTGGACTTGGATATTGGGCAAACATCCATAGTTTCTAGCACTATTTGAGTATCTGACTGTCCAAATGGTTGCTGGATTATTCCAATCCTCTGGATGTCCTGCAGTAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCAC</genome_strand>
        <mrna_strand>TCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAG.........................................................................................................................AGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTG............................................................................GCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321949" ref_strand="+" ref_description="SGN-E321949 [cTOB-29-G6]">
      <seq>tctttgatttttcatcggtacaaattagttttctctctaaatattttcctaatcttgttttggcagtgttcaaaattttcagtaagtagcttgtgccataggcatacaaagcgagaggttgtatctgctagctcaagctaacatatttcgccaaagtagataacatcaattttccgagttgggatttcaaatactgcttttcaaatctcaagaatgttaaaattatcggctgcctttatgacatggttggaggcgtggtctgaagcagagttttgaaaggtcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggtaagtaataagttcaactagaaagaaagtctatcatcaattatttcttctccctgaaaaaaaattatttctacaggctaggtagataaaattcttgatatgactattcctgctgaaggaccatattgtattcaaacgttgcatgaactgattgaatttgttggttagattatctcatgaaattttgctctcctcgtgttctcttggaagatgagccctactttcacttgtggcagaaatatcgtggtaaaaatgctgagcagacccctttaactacactctatgtagaaaatctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80872" stop="78350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80572" g_stop="80458" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80336" g_stop="80180" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="274" r_length="159" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082">
            <donor d_prob="0.409" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79097" g_stop="78650" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="722" r_length="448" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E321949" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80572" e_stop="80458"/>
          <exon e_start="80336" e_stop="80180"/>
          <exon e_start="79097" e_stop="78650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAGGTAAGTTTTTTCTCCTATATGGTGAAAAATTCGCATCTACAAATGTTCATATGCTATTATTAAAATAAGTTTCAAGCTTTTTCTTTATAGATGTTTGAACTTATTGGACCATGATTTGCAGAGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTC-AATCTCAAGAATGTTAAAATTATCGGTTGCC-TTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTTGTAAGCTTTTCGAACCTTTGAGGTTTATATTAAAGAATACAGTGATTTTGCAAAAGTTTGTTATCATAACAATTAAACAAGTGTGCGTTCCGGCATTCATAACGATTGACTAAGAAATTGTTAGACAGTAAAAAATCATCAACAAATTTCGTGATTGTTTATCAAGAGATTGCTTAGCCAACCATTATAAATAATCACGAAATTTGTTGTAGTGTTTCTAGCCGCTGCAACAAATACATATTTATCAACAAAATATAAGGTGTATCTAGCGATTAAGAGTTGCTTTTTGTAGTAGTGTTCTTATTAGGATCATTATGTATGAACTACAACTGAGTTAGAGTTGAGTTTTGATAAGAAAAGTTGGAAGTTGTGGGCATGCTAATTGAAAAACCGCAAGTATCGACTATCGTGAAACAAGCACTTGATAGTTGATCCTGATCTTGTGGGGTTGGTCTTAAATATCTCAGGGTACTTAGTCTATAAGATGGATTCAATAGTTTTTTCTACTGTGGAAATATTGAGAACAGATTTATTCACAACTCTTTTTGGACTTGGATATTGGGCAAACATCCATAGTTTCTAGCACTATTTGAGTATCTGACTGTCCAAATGGTTGCTGGATTATTCCAATCCTCTGGATGTCCTGCAGTAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTG</genome_strand>
        <mrna_strand>TCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGCAGTGTTCAAAATTTTCAGTAAGTAGCTTGTGCCATAGGCATACAAAGCGAG.........................................................................................................................AGGTTGTATCTGCTAGCTCAAGCTAACATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATACTGCTTTTCAAATCTCAAGAATGTTAAAATTATCGGCTGCCTTTATGACATGGTTGGAGGCGTGGTCTGAAGCAGAGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAGTTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGTAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGTATTCAAACGTTGCATGAACTGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTGCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGGTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375439" ref_strand="+" ref_description="SGN-E375439 [TUS-34-D2]">
      <seq>tcggtacaaattagttttctctctaaatattttcctaatcttgttttggtagtgttcaaaattttcagtaagtaccttgtgccataggcatacaaagcgagaggttgtatctgctagctcaagctaagatatttcgccaaagtagataacatcaattttccgagttgggatttcaaataatgcttttcaatctcaagaatgttaaaattatcggttgccttatgacatggttggaggcgtggtctgaaagagagttttgaaaggtcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggctaggcagataaaattcttgatatgactattcctgctgaaggaccatattgcattcaaacgttgcatgaacggattgaatttgttggttagattatctcatgaaattttcctctcctcgtgttctcttggaagatgagccctactttcacttgtggcagaaatatcgtgttaaaaatgctgagcagacccctttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80858" stop="78375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80558" g_stop="80458" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80336" g_stop="80180" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="258" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79097" g_stop="78949" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="407" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78948" i_stop="78873" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78872" g_stop="78675" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="605" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E375439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80558" e_stop="80458"/>
          <exon e_start="80336" e_stop="80180"/>
          <exon e_start="79097" e_stop="78949"/>
          <exon e_start="78872" e_stop="78675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAGGTAAGTTTTTTCTCCTATATGGTGAAAAATTCGCATCTACAAATGTTCATATGCTATTATTAAAATAAGTTTCAAGCTTTTTCTTTATAGATGTTTGAACTTATTGGACCATGATTTGCAGAGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTTGTAAGCTTTTCGAACCTTTGAGGTTTATATTAAAGAATACAGTGATTTTGCAAAAGTTTGTTATCATAACAATTAAACAAGTGTGCGTTCCGGCATTCATAACGATTGACTAAGAAATTGTTAGACAGTAAAAAATCATCAACAAATTTCGTGATTGTTTATCAAGAGATTGCTTAGCCAACCATTATAAATAATCACGAAATTTGTTGTAGTGTTTCTAGCCGCTGCAACAAATACATATTTATCAACAAAATATAAGGTGTATCTAGCGATTAAGAGTTGCTTTTTGTAGTAGTGTTCTTATTAGGATCATTATGTATGAACTACAACTGAGTTAGAGTTGAGTTTTGATAAGAAAAGTTGGAAGTTGTGGGCATGCTAATTGAAAAACCGCAAGTATCGACTATCGTGAAACAAGCACTTGATAGTTGATCCTGATCTTGTGGGGTTGGTCTTAAATATCTCAGGGTACTTAGTCTATAAGATGGATTCAATAGTTTTTTCTACTGTGGAAATATTGAGAACAGATTTATTCACAACTCTTTTTGGACTTGGATATTGGGCAAACATCCATAGTTTCTAGCACTATTTGAGTATCTGACTGTCCAAATGGTTGCTGGATTATTCCAATCCTCTGGATGTCCTGCAGTAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAAC</genome_strand>
        <mrna_strand>TCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAG.........................................................................................................................AGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTG............................................................................GCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253186" ref_strand="+" ref_description="SGN-E253186 [cLEG-26-M16]">
      <seq>tcggtacaaattagttttctctctaaatattttcctaatcttgttttggtagtgttcaaaattttcagtaagtaccttgtgccataggcatacaaagcgagaggttgtatctgctagctcaagctaagatatttcgccaaagtagataacatcaattttccgagttgggatttcaaataatgcttttcaatctcaagaatgttaaaattatcggttgccttatgacatggttggaggcgtggtctgaaagagagttttgaaaggtcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggctaggcagataaaattcttgatatgactattcctgctgaaggaccatattgcattcaaacgttgcatgaacggattgaatttgttggttagattatctcatgaaattttcctctcctcgtgttctcttggaagatgagccctactttcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80858" stop="78420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80558" g_stop="80458" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80336" g_stop="80180" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="258" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79097" g_stop="78949" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="407" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78948" i_stop="78873" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78872" g_stop="78720" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="560" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E253186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80558" e_stop="80458"/>
          <exon e_start="80336" e_stop="80180"/>
          <exon e_start="79097" e_stop="78949"/>
          <exon e_start="78872" e_stop="78720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAGGTAAGTTTTTTCTCCTATATGGTGAAAAATTCGCATCTACAAATGTTCATATGCTATTATTAAAATAAGTTTCAAGCTTTTTCTTTATAGATGTTTGAACTTATTGGACCATGATTTGCAGAGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTTGTAAGCTTTTCGAACCTTTGAGGTTTATATTAAAGAATACAGTGATTTTGCAAAAGTTTGTTATCATAACAATTAAACAAGTGTGCGTTCCGGCATTCATAACGATTGACTAAGAAATTGTTAGACAGTAAAAAATCATCAACAAATTTCGTGATTGTTTATCAAGAGATTGCTTAGCCAACCATTATAAATAATCACGAAATTTGTTGTAGTGTTTCTAGCCGCTGCAACAAATACATATTTATCAACAAAATATAAGGTGTATCTAGCGATTAAGAGTTGCTTTTTGTAGTAGTGTTCTTATTAGGATCATTATGTATGAACTACAACTGAGTTAGAGTTGAGTTTTGATAAGAAAAGTTGGAAGTTGTGGGCATGCTAATTGAAAAACCGCAAGTATCGACTATCGTGAAACAAGCACTTGATAGTTGATCCTGATCTTGTGGGGTTGGTCTTAAATATCTCAGGGTACTTAGTCTATAAGATGGATTCAATAGTTTTTTCTACTGTGGAAATATTGAGAACAGATTTATTCACAACTCTTTTTGGACTTGGATATTGGGCAAACATCCATAGTTTCTAGCACTATTTGAGTATCTGACTGTCCAAATGGTTGCTGGATTATTCCAATCCTCTGGATGTCCTGCAGTAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTT</genome_strand>
        <mrna_strand>TCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAG.........................................................................................................................AGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTG............................................................................GCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392177" ref_strand="+" ref_description="SGN-E392177 [TUS-34-K5]">
      <seq>tcataagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggtaagtaataagttcaactagaaagaaagtctatcatcaattatttcttctccctgaaaaaaaattatttctacaggctaggtagataaaattcttgatatgactattcctgctgaaggaccatattgtattcaaacgttgcatgaactgattgtttttgttggttagattatctcatgatgttttgcgctcctcgagttctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79391" stop="78443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79091" g_stop="78743" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E392177" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79091" e_stop="78743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTG</genome_strand>
        <mrna_strand>TCATAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAGTTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGTAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGTATTCAAACGTTGCATGAACTGATTGTTTTTGTTGGTTAGATTATCTCATGATGTTTTGCGCTCCTCGAGTTCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274014" ref_strand="+" ref_description="SGN-E274014 [cLEN-8-M6]">
      <seq>actctatcttctatgttctctttgatttttcatcggtacaaattagttttctctctaaatattttcctaattgttttggtagtgttcaaaattttcaataagtaccttgtgccataggcatacaaagcgagaggttgtatctgctagctcaagctaagatatttcgccaaagtagataacatcaattttccgagttgggatttcaaataatgcttttcaatctcaagaatgttaaaattatcggttgccttatgacatggttggaggcgtggtctgaaacagagttttgaaaggtcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggctaggcagataaaattcttgatatgactattcctgctgaaggaccatattgcattcaaacgttgcatgaacggattgaatttgttggttagattatctcatgaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80890" stop="78464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80590" g_stop="80458" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80336" g_stop="80180" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="288" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79097" g_stop="78949" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="437" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78948" i_stop="78873" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78872" g_stop="78764" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="546" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E274014" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80590" e_stop="80458"/>
          <exon e_start="80336" e_stop="80180"/>
          <exon e_start="79097" e_stop="78949"/>
          <exon e_start="78872" e_stop="78764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTATCTTCTATGTTCTCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAGGTAAGTTTTTTCTCCTATATGGTGAAAAATTCGCATCTACAAATGTTCATATGCTATTATTAAAATAAGTTTCAAGCTTTTTCTTTATAGATGTTTGAACTTATTGGACCATGATTTGCAGAGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTTGTAAGCTTTTCGAACCTTTGAGGTTTATATTAAAGAATACAGTGATTTTGCAAAAGTTTGTTATCATAACAATTAAACAAGTGTGCGTTCCGGCATTCATAACGATTGACTAAGAAATTGTTAGACAGTAAAAAATCATCAACAAATTTCGTGATTGTTTATCAAGAGATTGCTTAGCCAACCATTATAAATAATCACGAAATTTGTTGTAGTGTTTCTAGCCGCTGCAACAAATACATATTTATCAACAAAATATAAGGTGTATCTAGCGATTAAGAGTTGCTTTTTGTAGTAGTGTTCTTATTAGGATCATTATGTATGAACTACAACTGAGTTAGAGTTGAGTTTTGATAAGAAAAGTTGGAAGTTGTGGGCATGCTAATTGAAAAACCGCAAGTATCGACTATCGTGAAACAAGCACTTGATAGTTGATCCTGATCTTGTGGGGTTGGTCTTAAATATCTCAGGGTACTTAGTCTATAAGATGGATTCAATAGTTTTTTCTACTGTGGAAATATTGAGAACAGATTTATTCACAACTCTTTTTGGACTTGGATATTGGGCAAACATCCATAGTTTCTAGCACTATTTGAGTATCTGACTGTCCAAATGGTTGCTGGATTATTCCAATCCTCTGGATGTCCTGCAGTAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTT</genome_strand>
        <mrna_strand>ACTCTATCTTCTATGTTCTCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAAT--TGTTTTGGTAGTGTTCAAAATTTTCAATAAGTACCTTGTGCCATAGGCATACAAAGCGAG.........................................................................................................................AGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAACAGAGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTG............................................................................GCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273951" ref_strand="+" ref_description="SGN-E273951 [cLEN-7-D14]">
      <seq>agttgcaatggttgggaattagttttgcaaagaagaagttatttataatgggtatttagaattctcacacttctgttgggatattacggggtcattagtcgcatcaatattattgaaatacaaatggggttggtcggtgattgttcctggtatccttattgcttttagtggcatgatagtgttccttttgttacccgtttatccgaaatccattgaatgcaataaagatgaagtgctatctctaggaaaagaagacgaggaagtgaatgaacctctctcgagatcaaacagagaaagaaatcggccgtgggttttagtgaagcacggaggattcccgaagttgtgccatctggtctttgaccttttttttttggtggcttacacatttctctaatgtggttgtcgtacaacactaactgttccatgctgcaagaaaggtcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79829" stop="78737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79529" g_stop="79037" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E273951" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79529" e_stop="79037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGC</genome_strand>
        <mrna_strand>AGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAAGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548094" ref_strand="+" ref_description="SGN-E548094 [TUS-58-A12]">
      <seq>tagttgcaatggatgggaattagttttgcagagaagaagttatttatgatgggtatttagaattctcacacttctgttgggatattacggggtcattagtagcatcaatattattgaaatacaaatggggttggtcggagattgtttctggtatccttattgcttttagtggcatgatagtgttacttttgttacccgtttatccgaaatccattgaatgcaataaagatgaagtgctatctctaggaaaagaagacgaggaagtgaatgaacctgtctcgagatcaaactgagaacgaaatcggacatgggttttagtgaagcacggaggattcccgaagttgtgccatctggtctttgacctttttctattggtaggcttacacatttctctaatgtggttgtcgtacaacactaactggtccatgctgcaggaaagggcaaaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79830" stop="78782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79530" g_stop="79082" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E548094" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79530" e_stop="79082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGT-GGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTAT</genome_strand>
        <mrna_strand>TAGTTGCAATGGATGGGAATTAGTTTTGCAGAGAAGAAGTTATTTATGATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTAGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGAGATTGTTTCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTACTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTGTCTCGAGATCAAACTGAGAACGAAATCGGACATGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTCTATTGGTAGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGGTCCATGCTGCAGGAAAGGGCAAAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330144" ref_strand="+" ref_description="SGN-E330144 [cTOD-5-L23]">
      <seq>tttgtgcatatatatgtatttccttcaaattctcttcatcttcattttaggtaattgccggtcaaaatcatgtttacaacgataatgttctttgatatttaatattagaagtaaatcttgaagactattattaaattatcctactctacttaaatagtaggccttttgtttcaagtagcctgcacttatatccattgataatatgttattgtaaataccacgggcttaatatgatgcttataaattaattcagataaaggagataatagtgtgaaggatttctagcaggaaatgaggttgcttgtttcacatggttagtagccttttaatctgtttaacatgaggtaatctacaataaaatgttctacagagaagatcaggaagggaaacaatccactgtctttttacttttagaaactattgctctgtcgaaatactgataattatatgaagttatagcttgaaactaactgaagtttctatgaaatatatattatgcagggattgctgaaacaaaaaaaatatgttaagaaatttgagttgaatatcttgttttatatgaagatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84107" stop="80872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83809" g_stop="83760" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83759" i_stop="81726" i_length="2034">
            <donor d_prob="0.137" d_score="0.88"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81725" g_stop="81172" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="570" r_length="520" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E330144" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.060" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83809" e_stop="83760"/>
          <exon e_start="81725" e_stop="81172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGGCATATATATGTATTTTTTTTAAATTCTCTTCATCTTCATTTTAGGTATGTTTTTATTCCTCCAAATGGATGTGTCTTTAAACATCTCCATTTCACCTTCCTGTTTTAGTACCAGTTTTTTAAAATTTTGATTTTAATTTTTATATTACTTTTGAGTTTTATTTTGTTGCATTATGAGCAAATGTTTGTTTTCCTCCTTTTTCTAAATTATTTCAATAGTGAGTTCAAGAGTTAATTGCAAGTAATTGAGTGCATGGATGAATTTGTACGACTCTACCCCTTTACCAGTATTATATTACTATAATTTGTAGCATCTCAAAAATGATTTGATTCTTATTCATTGTCACTAAAAAGGGTATTTAATGAGGAGTTCAATCCTACGACAATTGAGATGTATGCCATTTAAAATTAGATATACTTGAGAATCTTTATGCAATATTTTACTTGTTTACTCCCATTTGCAGGTTAACTGTTTGGATGATTGTAGTGTTGATATCTTTGATGATCAATCGGTGATTACATTATTAAAGGTAATATTTGCATATCTTTTTTCTCTTGATATATCCCCATGCTTTTCAGTTTTTATCGTGCTTTTAATTTTCTTTTGTTTCATTCAGAGGAGATCCATGATTACCTCATCGTGTTTCTTAGAATATCAAAAGATGCCTTGTTAGATGGTTGGATTTGCACAACATTCAATTGGCTTAGAATAATAGAATGTAATATATAAATAAGATGCTTGTGTTGCCTTCTTTCATTACGCTCTATGATTTTTTAAATGCGGTCATGCGAATTCAACTTAAAATAACGATTTCGCTTCAGCATCTTCGATATCAAATCATATCTTAGAATCTAGGTACAAGTATATTTCATTGAGGTATGTCACATATGATGCTTACTTGGATCAGGTGCAAGGCCCCGAGAAATGGTATCATATAATTTCAACGGAGTGTTAAATATGTTATTTTTTATACTTTTATTATTACTAGGCTACATCGACTGTCTTTTCATTTTTCTTCTCTTAAGTTATGTTTTGGAACATTGTAAAATGTTTGATACCTCACTAATGAATATCTTTTTTCTTTTAATTGGTAGTAATTTCAATGCATTTGCTAATGATTTTTTTTTTTAAAAAAAAAGATTCAGTTAAGAGTTTTGTATAATGTAGATCTTTATATGGGATAGTCTTATTCATGCTATGAGCTTACTTCATTATTCTAGAATACTTTTGAGTTTATGTTGTCTTTTCTATCTGATACCTTTATTTTTGTTTTGTAATTCGTCTGCACCCTTATATGAAATGATGTTGAGAACAATGGTAGAAATCTATGACTATATCTATTGAATCTTACATCAAATTTAATTTTGTTATTTGAAAACACTCAAGTCAAATAGACATTATCTCTAAATTATTTGTATTAAAATAGAGATTCAGGTAACTAATTTGTTGACTTTTGAGTGGAGTTGATGGTGAAAATGATATTTAGAATGTGAAAATAGATCTAATAATTTGTTGAATGTGATATATTGGTATTACCTTTATGTGTATAATAGAAATAAATTTTTGTATTTTAGTTTCTGACCGAACTTTGACTATATGAGTTGCCATTTTAGTCATTTCCTAAGTAAATTTTGAGTTGTTCAAGTAGTGTTTCTCTTGTCTTTTCTTAGACTAGCGCCTCTTCTATAAATAGTTTAGCTACATCTATGTATCTGTATTCTTGCTAGCTTGATTATTTCCGTATGTATATATTGTAATATTTTAACACAATCATTTTATTGAAGTTACGTTATTTGCCTGGTTACAATATTGTTTGTTTTTCTTTGTGATCTTATATGGCTAAATGTTGTATTCTACCGGATTTCATTTTCGGTAAGCTTTTTGTTGGACAACGTACATGTATGACAACTGACATGTTGTTAATTGTATTGTGATAAATTATTATTGTTAGTTAGATATTTGATGGATATTTACTTGAGGTTAGACTTTAATATGTTCTTTAAGGTGACACTCTATTTTTACCATAACTCATTCATCTAATATCACACTAAATAAGAGCTTTTGTTGCTGCCTTTCAGGTAATTGCCGGTCAAAATCATGTTTACAACGATGATGTTCTTTGATATTTAATATTACAAGTAAATCTTGAAGACTATTATTAAATTATCCTACTCTACTTAAATAGTAGGCCTTTTGTTTCAAGTAGCCTGCACTAAATGTTAATATCCATTGATGATATGTTATTGAAAATACCACGGGCTTAATATGGTGCTTATAAATTAATTCAGATAAAGGAGATAATAGTGTGAAGGATTTCTAGCAGGAAATGAGGTTGCTTGTTTCACATGGTTAGTAGCCTTTTAATCTGTTTAACATGATAAGGTAATCTACAATAAAATGTTCCAACTTATGCAATAGGAGTTGCATGTACAGAGAAGATCAGGAAGGGAAACAATCCACTGTCTTCTCACTTTTAGAAACTATTGCTCTGTCGAAATACTGATAATTATATGAAGTTATAGCTTGAAACTAATTGAAGTTTCTATGAAATATATATTATACAGGGATTGCTGAAAC-AAAAAAATATGTTAAGAAATTTGAGTTGAATATCTTGTATTATATGAAGATCAAA</genome_strand>
        <mrna_strand>TTTGTGCATATATATGTATTTCCTTCAAATTCTCTTCATCTTCATTTTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGCCGGTCAAAATCATGTTTACAACGATAATGTTCTTTGATATTTAATATTAGAAGTAAATCTTGAAGACTATTATTAAATTATCCTACTCTACTTAAATAGTAGGCCTTTTGTTTCAAGTAGCCTGCAC------TT-ATATCCATTGATAATATGTTATTGTAAATACCACGGGCTTAATATGATGCTTATAAATTAATTCAGATAAAGGAGATAATAGTGTGAAGGATTTCTAGCAGGAAATGAGGTTGCTTGTTTCACATGGTTAGTAGCCTTTTAATCTGTTTAACATG---AGGTAATCTACAATAAAATGTT----C-TA--------------------CAGAGAAGATCAGGAAGGGAAACAATCCACTGTCTTTTTACTTTTAGAAACTATTGCTCTGTCGAAATACTGATAATTATATGAAGTTATAGCTTGAAACTAACTGAAGTTTCTATGAAATATATATTATGCAGGGATTGCTGAAACAAAAAAAATATGTTAAGAAATTTGAGTTGAATATCTTGTTTTATATGAAGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334071" ref_strand="+" ref_description="SGN-E334071 [cTOD-24-J19]">
      <seq>gcatatctatgtattttctttaaattctcttcatcttcattttaggttaactgtttggatgattgtagtgttgatatatttgatgatcaatcggttattacattattaaaggtaatatttgcatatcttttttctcttgatatatccccatgcttttcagtttttgtcgtgcttttgattttcttttgtttcattcagaggagatccatgattacctcatcgtgtttcttagaatatcaaaagatgcattgttagatggttggatttgcacaacattcaattggcttagaataatagaatgtaatatataaataagatgcttgtgttgctttcttttactacgctctatgattttttaaatgcggtcatgcgaattcaacttaaaataacaatttcgcttcagcatcttcgatatcaaatcatatcttagaatcaagatacaagtatatttcattgaggtatgtcacatctgatgcttacttggatcaggtgcaaggccccgagaaatggtatcatacaatttcaatggagtgttaaatatattatttcttatacttttattattactaggctacatcgactgccttttcatttttcttctcttaacttatgttttggaacattgtaaaatgtttgatacctcactaatgaatatcttttttcttttaattggtaagtaatttcaatgcatttgctaatgaattttttttaaaaaaaaaaagattcagttaagagttttgtataatgtagatctttatatgggatagtcttattcatgctatgagcttacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84104" stop="82294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83804" g_stop="83760" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83759" i_stop="83341" i_length="419">
            <donor d_prob="0.137" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83340" g_stop="82594" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="793" r_length="748" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E334071" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83804" e_stop="83760"/>
          <exon e_start="83340" e_stop="82594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATATATGTATTTTTTTTAAATTCTCTTCATCTTCATTTTAGGTATGTTTTTATTCCTCCAAATGGATGTGTCTTTAAACATCTCCATTTCACCTTCCTGTTTTAGTACCAGTTTTTTAAAATTTTGATTTTAATTTTTATATTACTTTTGAGTTTTATTTTGTTGCATTATGAGCAAATGTTTGTTTTCCTCCTTTTTCTAAATTATTTCAATAGTGAGTTCAAGAGTTAATTGCAAGTAATTGAGTGCATGGATGAATTTGTACGACTCTACCCCTTTACCAGTATTATATTACTATAATTTGTAGCATCTCAAAAATGATTTGATTCTTATTCATTGTCACTAAAAAGGGTATTTAATGAGGAGTTCAATCCTACGACAATTGAGATGTATGCCATTTAAAATTAGATATACTTGAGAATCTTTATGCAATATTTTACTTGTTTACTCCCATTTGCAGGTTAACTGTTTGGATGATTGTAGTGTTGATATCTTTGATGATCAATCGGTGATTACATTATTAAAGGTAATATTTGCATATCTTTTTTCTCTTGATATATCCCCATGCTTTTCAGTTTTTATCGTGCTTTTAATTTTCTTTTGTTTCATTCAGAGGAGATCCATGATTACCTCATCGTGTTTCTTAGAATATCAAAAGATGCCTTGTTAGATGGTTGGATTTGCACAACATTCAATTGGCTTAGAATAATAGAATGTAATATATAAATAAGATGCTTGTGTTGCCTTCTTTCATTACGCTCTATGATTTTTTAAATGCGGTCATGCGAATTCAACTTAAAATAACGATTTCGCTTCAGCATCTTCGATATCAAATCATATCTTAGAATCTAGGTACAAGTATATTTCATTGAGGTATGTCACATATGATGCTTACTTGGATCAGGTGCAAGGCCCCGAGAAATGGTATCATATAATTTCAACGGAGTGTTAAATATGTTATTTTTTATACTTTTATTATTACTAGGCTACATCGACTGTCTTTTCATTTTTCTTCTCTTAAGTTATGTTTTGGAACATTGTAAAATGTTTGATACCTCACTAATGAATATCTTTTTTCTTTTAATTGGT-AGTAATTTCAATGCATTTGCTAATGATTTTTTTTTTTAAAAAAAAAGATTCAGTTAAGAGTTTTGTATAATGTAGATCTTTATATGGGATAGTCTTATTCATGCTATGAGCTTACTTC</genome_strand>
        <mrna_strand>GCATATCTATGTATTTTCTTTAAATTCTCTTCATCTTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTGTTTGGATGATTGTAGTGTTGATATATTTGATGATCAATCGGTTATTACATTATTAAAGGTAATATTTGCATATCTTTTTTCTCTTGATATATCCCCATGCTTTTCAGTTTTTGTCGTGCTTTTGATTTTCTTTTGTTTCATTCAGAGGAGATCCATGATTACCTCATCGTGTTTCTTAGAATATCAAAAGATGCATTGTTAGATGGTTGGATTTGCACAACATTCAATTGGCTTAGAATAATAGAATGTAATATATAAATAAGATGCTTGTGTTGCTTTCTTTTACTACGCTCTATGATTTTTTAAATGCGGTCATGCGAATTCAACTTAAAATAACAATTTCGCTTCAGCATCTTCGATATCAAATCATATCTTAGAATCAAGATACAAGTATATTTCATTGAGGTATGTCACATCTGATGCTTACTTGGATCAGGTGCAAGGCCCCGAGAAATGGTATCATACAATTTCAATGGAGTGTTAAATATATTATTTCTTATACTTTTATTATTACTAGGCTACATCGACTGCCTTTTCATTTTTCTTCTCTTAACTTATGTTTTGGAACATTGTAAAATGTTTGATACCTCACTAATGAATATCTTTTTTCTTTTAATTGGTAAGTAATTTCAATGCATTTGCTAATGAATTTTTTTTAAAAAAAAAAAGATTCAGTTAAGAGTTTTGTATAATGTAGATCTTTATATGGGATAGTCTTATTCATGCTATGAGCTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347727" ref_strand="+" ref_description="SGN-E347727 [cTOF-26-O21]">
      <seq>ttaaaggcccaaacccccctctccccgatcattgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaatatggctgctgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83997" stop="87478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84297" g_stop="84421" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="368" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="500" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="617" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87178" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="652" r_length="35" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E347727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84297" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCA</genome_strand>
        <mrna_strand>TTAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTC-AATATGGCTGCTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375904" ref_strand="+" ref_description="SGN-E375904 [TUS-15-M8]">
      <seq>taaaggcccaaacccccctctccccgatcattgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaggtgctggtcaaatatggctgctgtcaaattttgactccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83998" stop="87492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84298" g_stop="84421" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="367" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="499" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="616" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87192" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="665" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E375904" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84298" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCA</genome_strand>
        <mrna_strand>TAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTC-AAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204782" ref_strand="+" ref_description="SGN-E204782 [cLEC-14-I7]">
      <seq>taaaggcccaaacccccctctccccgatcattgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83998" stop="87314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84298" g_stop="84421" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="367" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="499" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87014" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="558" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E204782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84298" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGA</genome_strand>
        <mrna_strand>TAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210401" ref_strand="+" ref_description="SGN-E210401 [cLEC-35-N20]">
      <seq>taaaggcccaaacccccctctccccgatcattgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83998" stop="85812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84298" g_stop="84421" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85512" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="285" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E210401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84298" e_stop="84421"/>
          <exon e_start="85352" e_stop="85512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACAC</genome_strand>
        <mrna_strand>TAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364171" ref_strand="+" ref_description="SGN-E364171 [cLPP-16-J15]">
      <seq>ggcccaaacccccttctccccgatcattgctctctgttaatcgacgccgtggtcgagtcccgccgtccgtcgcggacgttttctccggctaattcttcatctctatcgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaagaccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaagctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84002" stop="87140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84302" g_stop="84421" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="363" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="495" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="86967" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="507" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E364171" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84302" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="86967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCT</genome_strand>
        <mrna_strand>GGCCCAAACCCCCTTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCGTCGCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATCGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGACCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAAGCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579166" ref_strand="+" ref_description="SGN-E579166 [86291]">
      <seq>ggcccaaacccctctccgatcatcgctctctgttaatcgccgccgtggtcaactcccgccgtccatcccggacgttttctacggctaattcttcatctctatcgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattagcagtatggctgccagagcaggaccttccaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84013" stop="85748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84302" g_stop="84421" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85448" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="213" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E579166" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84302" e_stop="84421"/>
          <exon e_start="85352" e_stop="85448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGG</genome_strand>
        <mrna_strand>GGCCCAAA-C-CCCTCT-C-CGATCATCGCTCTCTGTTAATCGCCGCCGTGGTCAACTCCCGCCGTCCATCCCGGACGTTTTCTACGGCTAATTCTTCATCTCTATCGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTAGCAGTATGGCTGCCAGAGCAGGACCTTCCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249544" ref_strand="+" ref_description="SGN-E249544 [cLEF-56-D8]">
      <seq>ccaaacccccctctccccgatcattgctctctgttaatcgaggccgtgggcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaagctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84005" stop="87495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84305" g_stop="84421" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="360" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="492" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="609" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87195" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="662" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E249544" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84305" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGA</genome_strand>
        <mrna_strand>CCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGAGGCCGTGGGCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAA......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275701" ref_strand="+" ref_description="SGN-E275701 [cLEN-18-N17]">
      <seq>ccaaacccccctctccccgatcattgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84005" stop="85887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84305" g_stop="84421" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85587" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="353" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E275701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84305" e_stop="84421"/>
          <exon e_start="85352" e_stop="85587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCT</genome_strand>
        <mrna_strand>CCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577212" ref_strand="+" ref_description="SGN-E577212 [33746]">
      <seq>aaaccctctccgatcattgctctctgttaatcgccgccgtggtcgactcccgcgacgttttctccggctaattcttcatctctatcgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattagtagtatggctgccagagcaggaccttccaagggagctcctccaagaccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatagtataaggaaagggcctgttggggctcagataaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatataaatggcaataaagctgtgtttgacagtttgaggaataacctcaaagtatattatgatggcaatcgcttctcttataagtcgaaacatgctctgaaaaataaagatcaactacttatcttgatacgaaaattccctgagggtattgctgtaatcgacctcaaggatgcatacccaactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgcttgtcaaaattttgactcccaaggaagacattgcttccccaaatgatccacgagtaactaattaaggttgatggatcgatttgaaacagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84014" stop="87559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84312" g_stop="84421" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.827"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="342" r_length="243" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="474" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="591" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87256" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="711" r_length="120" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E577212" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84312" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGC-TGTC-AAATTTTGACTCCC-AGGAAGACATCGCCTTCCCAAATGATCCACGAGT-ACCCATTAAGGTTGAT-GAT-GATTTGAAACAG</genome_strand>
        <mrna_strand>AAACCCTCTCCGATCATTGCTCTCTGTTAATCGCCGCCGTGGTCGA------C--TCC--CGC-GACGTTTTCTCCGGCTAATTCTTCATCTCTATCGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTAGTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGACCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATAGTATAAGGAAAGGGCCTGTTGGGGCTCAGATAAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATATAAATGGCAATAAAGCTGTGTTTGACAGTTTGAGGAATAACCTCAAAGTATATTATGATGGCAATCGCTTCTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGATCAACTACTTATCTTGATACGAAAATTCCCTGAGGGTATTGCTGTAATCGACCTCAAGGATGCATACCCAACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTTGTCAAAATTTTGACTCCCAAGGAAGACATTGCTTCCCCAAATGATCCACGAGTAACTAATTAAGGTTGATGGATCGATTTGAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212966" ref_strand="+" ref_description="SGN-E212966 [cLEC-72-I13]">
      <seq>cctctccccgatcattgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaattccctgagggtattgctgntatcgacctcaaggatgcatacccgactgtcatggaggacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84014" stop="87369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84314" g_stop="84421" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="351" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="483" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87069" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="596" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E212966" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84314" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTG</genome_strand>
        <mrna_strand>CCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAG-AAATTCCCTGAGGGTATTGCTGNTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436414" ref_strand="+" ref_description="SGN-E436414 [STM-62-P20]">
      <seq>ctccgatcatcgctctctgttaatcgccgccgtggtcaactcccgccgtccatcccggacgttttctacggctaattcttcatctctatcgtgtctatccaaggtcaagacctatctttttgtgtttattatcttttttggaagcttatttcttgtgcttcttattgcgattgggcctgaatagagcgaattggttacaaaggattcatatatgaatccgaactagtttgggattgagatgtagttgattgatccatgattgattcgtcgttttgattgggcatgaatagaaaaaggaaataggtcaagagcattactgattcgttgagtcgatttttctggaaacgaaatactatatatgatttaaacgatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattagcagtatggctgccagagcaggaccttccaagggagctcctccaagaccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatagtataaggaaagggcctgttggggctcagataaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatataaatggcaataaagctgtgtttgacagtttgaggaacaacctcaaagtatattatgatggcaatcgcttctcttataagtcgaaacatgctctngaaaataaagaacactacttatcttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84021" stop="87300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84319" g_stop="84720" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84721" i_stop="85351" i_length="631">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="613" r_length="243" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="745" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87000" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="789" r_length="44" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E436414" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84319" e_stop="84720"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATA</genome_strand>
        <mrna_strand>CTCCGATCATCGCTCTCTGTTAATCGCCGCCGTGGTCAACTCCCGCCGTCCATCCCGGACGTTTTCTACGGCTAATTCTTCATCTCTATCGTGTCTATCCAAGGTCAAGACC-TATCTTTTTGTGTTTATTATC--TTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAAAGGATTCATATA-TGAATCCGAACTAGTTTGGGATTGAG-AT-----GTAG--TT-GATT--G----A--T-C-----C--ATGATTGATTCGTCGTTTTGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAGCATTACTGATTCGTTGAG-TCGATTTTTCTGGAAACGAAATAC--TATATATGATTTAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTAGCAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGACCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATAGTATAAGGAAAGGGCCTGTTGGGGCTCAGATAAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATATAAATGGCAATAAAGCTGTGTTTGACAGTTTGAGGAACAACCTCAAAGTATATTATGATGGCAATCGCTTCTCTTATAAG...................................................................................................................TCGAAACATGCTCTNGAAAATAAAGAAC-ACTACTTATCTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458885" ref_strand="+" ref_description="SGN-E458885 [cPRO-32-P1]">
      <seq>ctccgatcatcgctctctgttaatcgccgccgtggtcaactcccgccgtccatcccggacgttttctacggctaattcttcatctctatcgtgtctatccaaggtcaagacctatctttttgtgtttattatcttttttggaagcttatttcttgtgcttcttattgcgattgggcctgaatagagcgaattggttacaaaggattcatatatgaatccgaactagtttgggattgagatgtagttgattgatccatgattgattcgtcgttttgattgggcatgaatagaaaaaggaaataggtcaagagcattactgattcgttgagtcgatttttctggaaacgaaatactatatatgatttaaacgatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattagcagtatggctgccagagcaggaccttccaagggagctcctccaagaccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatagtataaggaaagggcctgttggggctcagataaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatataaatggcaataaagctgtgtttgacagtttgaggaacaacctcaaagtatattatgatggcaatcgcttctcttataagtcgaaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84021" stop="87140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84319" g_stop="84720" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84721" i_stop="85351" i_length="631">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="613" r_length="243" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="745" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="86966" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="756" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E458885" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84319" e_stop="84720"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="86966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGC</genome_strand>
        <mrna_strand>CTCCGATCATCGCTCTCTGTTAATCGCCGCCGTGGTCAACTCCCGCCGTCCATCCCGGACGTTTTCTACGGCTAATTCTTCATCTCTATCGTGTCTATCCAAGGTCAAGACC-TATCTTTTTGTGTTTATTATC--TTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAAAGGATTCATATA-TGAATCCGAACTAGTTTGGGATTGAG-AT-----GTAG--TT-GATT--G----A--T-C-----C--ATGATTGATTCGTCGTTTTGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAGCATTACTGATTCGTTGAG-TCGATTTTTCTGGAAACGAAATAC--TATATATGATTTAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTAGCAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGACCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATAGTATAAGGAAAGGGCCTGTTGGGGCTCAGATAAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATATAAATGGCAATAAAGCTGTGTTTGACAGTTTGAGGAACAACCTCAAAGTATATTATGATGGCAATCGCTTCTCTTATAAG...................................................................................................................TCGAAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246899" ref_strand="+" ref_description="SGN-E246899 [cLEF-41-L19]">
      <seq>agaagcagctaaagtagctcagaaagaacgagcaatgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84022" stop="87119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84322" g_stop="84421" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="128" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="371" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86819" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="482" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E246899" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84322" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGAT</genome_strand>
        <mrna_strand>CGAGCAATGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258130" ref_strand="+" ref_description="SGN-E258130 [cLEG-48-F18]">
      <seq>cattgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaattccctgaaggtattgctggtatcgacctcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84026" stop="87341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84326" g_stop="84421" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="339" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="471" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87041" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="556" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E258130" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84326" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGA</genome_strand>
        <mrna_strand>CATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAG-AAATTCCCTGAAGGTATTGCTGGTATCGACCTCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256208" ref_strand="+" ref_description="SGN-E256208 [cLEG-37-M4]">
      <seq>cattgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84026" stop="87296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84326" g_stop="84421" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="339" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="471" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="86996" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="512" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E256208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84326" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="86996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTT</genome_strand>
        <mrna_strand>CATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420328" ref_strand="+" ref_description="SGN-E420328 [STM-31-E19]">
      <seq>ctgttaatcgccgccgtggtcaactcccgccgtccatcccggacgttttctacggctaattcttcatctctatcgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattagcagtatggctgccagagcaggaccttccaagggagctcctccaagaccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatagtataaggaaagggcctgttggggctcagataaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatataaatggcaataaagctgtgtttgacagtttgaggaacaacctcaaagtatattatgatggcaatcgcttctcttataagtcgaaacatgctctgaaaaataaagaacaactacttatcttgatacgaaaattccctganggtattgctgtaatcgacctcaaggatgcatacccaactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgattcccagaaagacattgccttcccaaatgatccacgagtacctattaaggttgatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84035" stop="87547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84335" g_stop="84421" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="330" r_length="243" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="462" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="579" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87247" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="684" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E420328" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84335" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGAT</genome_strand>
        <mrna_strand>CTGTTAATCGCCGCCGTGGTCAACTCCCGCCGTCCATCCCGGACGTTTTCTACGGCTAATTCTTCATCTCTATCGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTAGCAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGACCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATAGTATAAGGAAAGGGCCTGTTGGGGCTCAGATAAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATATAAATGGCAATAAAGCTGTGTTTGACAGTTTGAGGAACAACCTCAAAGTATATTATGATGGCAATCGCTTCTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAACAACTACTTATCTTGATACGAAAATTCCCTGANGGTATTGCTGTAATCGACCTCAAGGATGCATACCCAACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGATTCCCAGAAAGACATTGCCTTCCCAAATGATCCACGAGTACCTATTAAGGTTGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406082" ref_strand="+" ref_description="SGN-E406082 [PPI-2-L19]">
      <seq>ctgttaatcgccgccgtggtcaactcccgccgtccatcccggacgttttctacggctaattcttcatctctatcgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattagcagtatggctgccagagcaggaccttccaagggagctcctccaagaccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatagtataaggaaagggcctgttggggctcagataaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatataaatggcaataaagctgtgtttgacagtttgaggaacaacctcaaagtatattatgatggcaatcgcttctcttataagtcgaaacatgctctgaaaaataaagaacaactacttatcttgatacgaaaattccctgagggtattgctgtaatcgacctcaaggatgcatacccaactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgattcccaggaagacattgccttcccaaatgatccacgagtacctattaaggttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84035" stop="87545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84335" g_stop="84421" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="330" r_length="243" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="462" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="579" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87245" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="682" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E406082" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84335" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATG</genome_strand>
        <mrna_strand>CTGTTAATCGCCGCCGTGGTCAACTCCCGCCGTCCATCCCGGACGTTTTCTACGGCTAATTCTTCATCTCTATCGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTAGCAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGACCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATAGTATAAGGAAAGGGCCTGTTGGGGCTCAGATAAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATATAAATGGCAATAAAGCTGTGTTTGACAGTTTGAGGAACAACCTCAAAGTATATTATGATGGCAATCGCTTCTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAACAACTACTTATCTTGATACGAAAATTCCCTGAGGGTATTGCTGTAATCGACCTCAAGGATGCATACCCAACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGATTCCCAGGAAGACATTGCCTTCCCAAATGATCCACGAGTACCTATTAAGGTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263656" ref_strand="+" ref_description="SGN-E263656 [cLEG-60-G13]">
      <seq>gccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctacccacactgcaagaagaaggcaatggcacaagtccatggcattgctccccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84047" stop="87688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84347" g_stop="84421" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="318" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="450" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="567" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87388" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="813" r_length="246" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E263656" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84347" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATT-AAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAG</genome_strand>
        <mrna_strand>GCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCCACACTGCAAGAAGAA-GGCAATGGCACAAGTCCATGGCATTGCTCCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263780" ref_strand="+" ref_description="SGN-E263780 [cLEG-60-F12]">
      <seq>gccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacggggatgaacctgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84047" stop="87636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84347" g_stop="84421" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="318" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="450" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="567" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87336" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="761" r_length="194" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E263780" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84347" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTAC</genome_strand>
        <mrna_strand>GCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGGATGAACCTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255654" ref_strand="+" ref_description="SGN-E255654 [cLEG-36-B10]">
      <seq>ccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84061" stop="87359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84361" g_stop="84421" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="304" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="436" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87059" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="540" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E255654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84361" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCAT</genome_strand>
        <mrna_strand>CCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256527" ref_strand="+" ref_description="SGN-E256527 [cLEG-38-I3]">
      <seq>ccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84061" stop="87274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84361" g_stop="84421" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="304" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="436" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="86974" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="455" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E256527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84361" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="86974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAA</genome_strand>
        <mrna_strand>CCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583504" ref_strand="+" ref_description="SGN-E583504 [9325]">
      <seq>tcgactcccgcgacgttttctccggctaattcttcatctctatcgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattagtagtatggctgccagagcaggaccttccaagggagctcctccaagaccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatagtataaggaaagggcctgttggggctcagataaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatataaatggcaataaagctgtgtttgacagtttgaggaataacctcaaagtatattatgatggcaatcgcttctcttataagtcgaaacatgctctgaaacaataaagatcaactacttatcttgatacgaaaattccctgagggtattgcctgtaatcgacctcaggatgcatacccaactgtcatggaggacctgcaggctctcaaaggtgcctggtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84067" stop="87464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84367" g_stop="84421" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="300" r_length="243" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="432" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="550" r_length="118" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87164" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="573" r_length="23" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E583504" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84367" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCA-TCCCG-GACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAA-AATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTG-CTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTG-CTGGTCAAA</genome_strand>
        <mrna_strand>TCGACTCCCGCGACGTTTTCTCCGGCTAATTCTTCATCTCTATCGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTAGTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGACCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATAGTATAAGGAAAGGGCCTGTTGGGGCTCAGATAAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATATAAATGGCAATAAAGCTGTGTTTGACAGTTTGAGGAATAACCTCAAAGTATATTATGATGGCAATCGCTTCTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAACAATAAAGATCAACTACTTATCTTGATACGAAAATTCCCTGAGGGTATTGCCTGTAATCGACCTC-AGGATGCATACCCAACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCCTGGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276400" ref_strand="+" ref_description="SGN-E276400 [cLEN-17-K24]">
      <seq>cgttttctccggctaattcttcatctctatggtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcaaatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84078" stop="87063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84378" g_stop="84421" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="287" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86763" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="342" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E276400" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84378" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAA</genome_strand>
        <mrna_strand>CGTTTTCTCCGGCTAATTCTTCATCTCTATGGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAAATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244802" ref_strand="+" ref_description="SGN-E244802 [cLEF-2-A17]">
      <seq>gaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataaggtcgaaacatgctctgaaaaataaagagcaactacttatcttggtaagaaaattccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85099" stop="87313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85399" g_stop="85594" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="329" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87013" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="387" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E244802" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85399" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAA-GGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTG</genome_strand>
        <mrna_strand>GAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGGTAAGAAAATTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256854" ref_strand="+" ref_description="SGN-E256854 [cLEG-40-N1]">
      <seq>gctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85124" stop="87610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85424" g_stop="85594" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="303" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="420" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87310" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="588" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E256854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85424" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTG</genome_strand>
        <mrna_strand>GCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264843" ref_strand="+" ref_description="SGN-E264843 [cLEG-71-E4]">
      <seq>gaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctccccagcccaaaaccaaaaagaagaagcatgagattagcaagaagactaagctttacaatgctcatcttccagaactctttcaactttagatatctattgggtcataaacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85243" stop="87796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85543" g_stop="85594" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="184" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87496" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="655" r_length="354" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E264843" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85543" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCT</genome_strand>
        <mrna_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCCAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAAGACTAAGCTTTACAATGCTCATCTTCCAGAACTCTTTCAACTTTAGATATCTATTGGGTCATAAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264807" ref_strand="+" ref_description="SGN-E264807 [cLEG-71-F4]">
      <seq>gaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaagaagaagcatgagattagcaagaggactaagcttacaaatgctcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85243" stop="87751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85543" g_stop="85594" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="184" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87451" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="610" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E264807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85543" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTT</genome_strand>
        <mrna_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253773" ref_strand="+" ref_description="SGN-E253773 [cLEG-32-O18]">
      <seq>gaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaagaagaagcatgagattagcaagaggactaagcttacaaatgctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85243" stop="87749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85543" g_stop="85594" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="184" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87449" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="608" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E253773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85543" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATC</genome_strand>
        <mrna_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264871" ref_strand="+" ref_description="SGN-E264871 [cLEG-71-B7]">
      <seq>gaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaagaagaagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85243" stop="87714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85543" g_stop="85594" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="184" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87414" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="573" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E264871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85543" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGA</genome_strand>
        <mrna_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253661" ref_strand="+" ref_description="SGN-E253661 [cLEG-32-O6]">
      <seq>gaaagggcctgttgggtctcattctaaacgtgtcataaacttggttctggagagaaggcttgctttcacaccagaacagaccaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcaaaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85243" stop="87703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85543" g_stop="85594" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="184" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87403" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="562" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E253661" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85543" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAG</genome_strand>
        <mrna_strand>GAAAGGGCCTGTTGGGTCTCATTCTAAACGTGTCATAAACTTGGTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTGCTTTCACACCAGAACAGACCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAAAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253736" ref_strand="+" ref_description="SGN-E253736 [cLEG-32-O21]">
      <seq>gaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85243" stop="87649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85543" g_stop="85594" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="184" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87349" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="508" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E253736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85543" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAG</genome_strand>
        <mrna_strand>GAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264674" ref_strand="+" ref_description="SGN-E264674 [cLEG-72-C3]">
      <seq>aaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactccccaggaagacatcgccttccccaatgatccacgagtaccccataaaggtgatgatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85244" stop="87548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85544" g_stop="85594" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="183" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="300" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87248" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="407" r_length="107" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E264674" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85544" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACT-CCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATT</genome_strand>
        <mrna_strand>AAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCCAGGAAGACATCGCCTTCCCCAATGATCCACGAGTACCCCATAAAGGTGATGATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261918" ref_strand="+" ref_description="SGN-E261918 [cLEG-58-C13]">
      <seq>aagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaagaagaagcatgagattagcaagaggactaagcttacaaatgctcatcttccagaactcttcaaactttagatatctattggttcataaacttctcccgaatagaaaacaagcactggagttcctcctctcctttccagattctgttgtctagtgactgaaccttgaatacctaatgcttttacatacgtctagcatgaagagttctttacgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85245" stop="87917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85545" g_stop="85594" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="182" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="299" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87617" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="774" r_length="475" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E261918" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85545" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATG</genome_strand>
        <mrna_strand>AAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTTACATACGTCTAGCATGAAGAGTTCTTTACGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257858" ref_strand="+" ref_description="SGN-E257858 [cLEG-39-F23]">
      <seq>atgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85265" stop="87523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85565" g_stop="85594" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="162" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="279" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87143" g_stop="87223" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="360" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E257858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85565" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGA</genome_strand>
        <mrna_strand>ATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213914" ref_strand="+" ref_description="SGN-E213914 [cLEC-76-P24]">
      <seq>ttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaagaagaagcatgagattagcaagaggactaagcttacaaatgctcatcttccagaactcttcaaactttagatatctattggttcataaacttctcccgaatagaaaacaagcactggagttcctcctctccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86460" stop="87836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86760" g_stop="86840" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="198" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87143" g_stop="87536" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="592" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E213914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86760" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTT</genome_strand>
        <mrna_strand>TTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243276" ref_strand="+" ref_description="SGN-E243276 [cLEF-12-H19]">
      <seq>caaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86504" stop="87696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86804" g_stop="86840" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="154" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87143" g_stop="87396" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="408" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E243276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86804" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAAC</genome_strand>
        <mrna_strand>CAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261348" ref_strand="-" ref_description="SGN-E261348 [cLEG-57-I21]">
      <seq>gagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaagaagaagcatgagattagcaagaggactaagcttacaaatgctcatcttccagaactcttcaaactttagatatctattggttcataaacttctcccgaatagaaaacaagcactggagttcctcctctcctttccagattctgttgtctagtgactgaaccttgaatacctaatgctttaccatacgtctagcatgaagagttctttacgaatggctaaagccttggtgtttggttcctattcacaaggttgtgttttgtttttactgacctggtaaacttggggtgggaatatgatactaataatttgtgattttattactgacttgggtttttggaccatcaaattgttatgttcatgaagatcaacatcattttgtatcatattgtttaatatcaatatatattacgattaaaattaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86713" stop="88127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87013" g_stop="87072" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87143" g_stop="87823" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="741" r_length="681" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="761"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E261348" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261348" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87013" e_stop="87072"/>
          <exon e_start="87143" e_stop="87823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTA</genome_strand>
        <mrna_strand>GAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375903" ref_strand="+" ref_description="SGN-E375903 [TUS-15-M8](-)">
      <seq>aaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaagaagaagcatgagattagcaagaggactaagcttacaaatgctcatcttccagaactcttcaaactttagatatctattggttcataaacttctcccgaatagaaaacaagcactggagttcctcctctcctttccagattctgttgtctagtgactgaaccttgaatacctaatgctttaccatacgtctagcatgaagagttctttacgaatggctaaagccttggtgtttggttcctattcacaaggttgtgttttgtttttactgacctggtaaacttggggtgggaatatgatactaataatttgtgattttattactgacttgggtttttggaccatcaaattgttatgttcatgaagatcaacatcattttgtatcatattgtttaatatcaatatatattacgattaaaattagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86737" stop="88127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87037" g_stop="87072" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87143" g_stop="87837" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="731" r_length="695" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E375903" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87037" e_stop="87072"/>
          <exon e_start="87143" e_stop="87837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTAGTAACTTGATGAGG</genome_strand>
        <mrna_strand>AAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTAGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261056" ref_strand="-" ref_description="SGN-E261056 [cLEG-55-J22]">
      <seq>aaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacnatcgccttcccnaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaagaagaagcatgagattagcaagaggactaagcttacaaatgctcatcttccagaactcttcaaactttagatatctattggttcataaacttctcccgaatagaaaacaagcactggagttcctcctctcctttccagattctgttgtctagtgactgaaccttgaatacctaatgctttaccatacgtctagcatgaagagttctttacgaatggctaaagccttggtgtttggttcctattcacaaggttgtgttttgtttttactgacctggtaaacttggggtgggaatatgatactaataatttgtgattttattactgacttgggtttttggaccatcaaattgttatgttcatgaagatcaacatcattttgtatcatattgtttaatatcaatatatattacgattaaaattaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86737" stop="88127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87037" g_stop="87072" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87143" g_stop="87823" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="719" r_length="683" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="739"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E261056" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261056" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87037" e_stop="87072"/>
          <exon e_start="87143" e_stop="87823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGAC-ATCGCCTTCCC-AAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTA</genome_strand>
        <mrna_strand>AAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACNATCGCCTTCCCNAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259290" ref_strand="+" ref_description="SGN-E259290 [cLEG-43-A9]">
      <seq>ttttttaatcgtaatatatattgatattaaacaatatgataccaaaatgatgttgatcttcatgaaccataacaatttgatggtccaaaaacccaagtcagtaataaaatcaccaaattattagtatcatattcccaccccaagtttaccaggtcagtaaaaacaaaaccacaaccttgtgaataggaacccaaacacccaaggctttagccattcgtaaagaacctcttcatgcctagacgtatggtaaagcattaggtattcaaggttcagtcacctagaccaacagaatctggaaaggagaggaggaacctccagtgcttgttttctattcgggagaagtttatgaaccaatagatatctaaagtttgaagagttctggaagatgagcatttgtaagccttagtcctcttgctaatctcatgccttcttctttttggttttgggccttgggagcaatgccatggaccttgtgcccattgccccttctctttgcagtgttggtagcaggtttcatcccgttcttctgcagatccctttcgatatcaagcatgtcacgtggtaattcaatacctctgaatagctgtttcaaatcatcatcaaccctaatgggtacctcgggatcatttgggaaggcgatgtcttccctgggagtcaaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88120" stop="86877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87822" g_stop="87177" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E259290" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87822" e_stop="87177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAATCGTAATATATATTGATATTAAACAATATGATA-CAAAATGATGTTGATCTTCATGAA-CATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCA-CAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAA-CACAACCTTGTGAATAGGAA-CCAAACA-CCAAGGCTTTAGCCATTCGTAAAGAA-CTCTTCATG-CTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCA-CTAGA-CAACAGAATCTGGAAAGGAGAGGAGGAA-CTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAAG-CTTAGTCCTCTTGCTAATCTCATG-CTTCTTCTTTTTGGTTTTGGG-CTTGGGAGCAATGCCATGGA-CTTGTG-CCATTG-CCCTTCTCTTTGCAGTGTTGGTAGCAGGTTTCATCCCGTTCTTCTGCAGATCCCTTTCGATATCAAGCATGTCACGTGGTAATTCAATACCTCTGAATAGCTGTTTCAAATCATCATCAACCTTAATGGGTACTCGTGGATCATTTGGGAAGGCGATGTCTT-CCTGGGAGTCAAAATTTG</genome_strand>
        <mrna_strand>TTTTTTAATCGTAATATATATTGATATTAAACAATATGATACCAAAATGATGTTGATCTTCATGAACCATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACCAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACCACAACCTTGTGAATAGGAACCCAAACACCCAAGGCTTTAGCCATTCGTAAAGAACCTCTTCATGCCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACCTAGACCAACAGAATCTGGAAAGGAGAGGAGGAACCTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAAGCCTTAGTCCTCTTGCTAATCTCATGCCTTCTTCTTTTTGGTTTTGGGCCTTGGGAGCAATGCCATGGACCTTGTGCCCATTGCCCCTTCTCTTTGCAGTGTTGGTAGCAGGTTTCATCCCGTTCTTCTGCAGATCCCTTTCGATATCAAGCATGTCACGTGGTAATTCAATACCTCTGAATAGCTGTTTCAAATCATCATCAACCCTAATGGGTACCTCGGGATCATTTGGGAAGGCGATGTCTTCCCTGGGAGTCAAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259374" ref_strand="+" ref_description="SGN-E259374 [cLEG-43-L15]">
      <seq>ttttttaatcgtaatatatattgatattaaacaatatgatacaaaatgatgttgatcttcatgaacataacaatttgatggtccaaaaacccaagtcagtaataaaatcacaaattattagtatcatattcccaccccaagtttaccaggtcagtaaaaacaaaacacaaccttgtgaataggaaccaaacaccaaggctttagccattcgtaaagaactcttcatgctagacgtatggtaaagcattaggtattcaaggttcagtcactagacaacagaatctggaaaggagaggaggaactccagtgcttgttttctattcgggagaagtttatgaaccaatagatatctaaagtttgaagagttctggaagatgagcatttgtaagcttagtcctcttgctaatctcatgccttcttctttttggttttgggcttgggagccatgccatggacttgtgccattgcccttctctttgcagtgttggtagcaggtttcatcccgttcttctgcagatccctttcgatatcaagcatgtcacgtggtaattcaatacctctgaatagctgtttcaaatcatcatcaaccttaatgggtactcgtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88120" stop="86915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87822" g_stop="87215" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E259374" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87822" e_stop="87215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAATCGTAATATATATTGATATTAAACAATATGATACAAAATGATGTTGATCTTCATGAACATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACACAACCTTGTGAATAGGAACCAAACACCAAGGCTTTAGCCATTCGTAAAGAACTCTTCATGCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACTAGACAACAGAATCTGGAAAGGAGAGGAGGAACTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAAGCTTAGTCCTCTTGCTAATCTCATG-CTTCTTCTTTTTGGTTTTGGGCTTGGGAGCAATGCCATGGACTTGTGCCATTGCCCTTCTCTTTGCAGTGTTGGTAGCAGGTTTCATCCCGTTCTTCTGCAGATCCCTTTCGATATCAAGCATGTCACGTGGTAATTCAATACCTCTGAATAGCTGTTTCAAATCATCATCAACCTTAATGGGTACTCGTGGATC</genome_strand>
        <mrna_strand>TTTTTTAATCGTAATATATATTGATATTAAACAATATGATACAAAATGATGTTGATCTTCATGAACATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACACAACCTTGTGAATAGGAACCAAACACCAAGGCTTTAGCCATTCGTAAAGAACTCTTCATGCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACTAGACAACAGAATCTGGAAAGGAGAGGAGGAACTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAAGCTTAGTCCTCTTGCTAATCTCATGCCTTCTTCTTTTTGGTTTTGGGCTTGGGAGCCATGCCATGGACTTGTGCCATTGCCCTTCTCTTTGCAGTGTTGGTAGCAGGTTTCATCCCGTTCTTCTGCAGATCCCTTTCGATATCAAGCATGTCACGTGGTAATTCAATACCTCTGAATAGCTGTTTCAAATCATCATCAACCTTAATGGGTACTCGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257222" ref_strand="+" ref_description="SGN-E257222 [cLEG-46-N4]">
      <seq>ttttttaatcgtaatatatattgatattaaacaatatgatacaaaatgatgttgatcttcatgaacataacaatttgatggtccaaaaacccaagtcagtaataaaatcacaaattattagtatcatattcccaccccaagtttaccaggtcagtaaaaacaaaacacaaccttgtgaataggaaccaaacaccaaggctttagccattcgtaaagaactcttcatgctagacgtatggtaaagcattaggtattcaaggttcagtcactagacaacagaatctggaaaggagaggaggaactccagtgcttgttttctattcgggagaagtttatgaaccaatagatatctaaagtttgaagagttctggaagatgagcatttgtaagcttagtcctcttgctaatctcatgcttcttctttttggttttgggcttgggagcaatgccatggacttgtgccattgcccttctctttgcagtgttggtagcaagtttcatcccgttcttctgcagatccctttcgatatcaagcatgtcacgtggtaattcaatacctctgaatagctgattcaaatcatcatcaaccttaatgggtactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88120" stop="86921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87822" g_stop="87221" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E257222" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87822" e_stop="87221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAATCGTAATATATATTGATATTAAACAATATGATACAAAATGATGTTGATCTTCATGAACATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACACAACCTTGTGAATAGGAACCAAACACCAAGGCTTTAGCCATTCGTAAAGAACTCTTCATGCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACTAGACAACAGAATCTGGAAAGGAGAGGAGGAACTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAAGCTTAGTCCTCTTGCTAATCTCATGCTTCTTCTTTTTGGTTTTGGGCTTGGGAGCAATGCCATGGACTTGTGCCATTGCCCTTCTCTTTGCAGTGTTGGTAGCAGGTTTCATCCCGTTCTTCTGCAGATCCCTTTCGATATCAAGCATGTCACGTGGTAATTCAATACCTCTGAATAGCTGTTTCAAATCATCATCAACCTTAATGGGTACTCG</genome_strand>
        <mrna_strand>TTTTTTAATCGTAATATATATTGATATTAAACAATATGATACAAAATGATGTTGATCTTCATGAACATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACACAACCTTGTGAATAGGAACCAAACACCAAGGCTTTAGCCATTCGTAAAGAACTCTTCATGCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACTAGACAACAGAATCTGGAAAGGAGAGGAGGAACTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAAGCTTAGTCCTCTTGCTAATCTCATGCTTCTTCTTTTTGGTTTTGGGCTTGGGAGCAATGCCATGGACTTGTGCCATTGCCCTTCTCTTTGCAGTGTTGGTAGCAAGTTTCATCCCGTTCTTCTGCAGATCCCTTTCGATATCAAGCATGTCACGTGGTAATTCAATACCTCTGAATAGCTGATTCAAATCATCATCAACCTTAATGGGTACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260262" ref_strand="+" ref_description="SGN-E260262 [cLEG-53-N11]">
      <seq>ttttttaatcgtaatatatattgatattaaacaatatgatacaaaatgatgttgatcttcatgaacataacaatttgatggtccaaaaacccaagtcagtaataaaatcacaaattattagtatcatattcccaccccaagtttaccaggtcagtaaaaacaaaacacaaccttgtgaataggaaccaaacaccaaggctttagccattcgtaaagaactcttcatgctagacgtatggtaaagcattaggtattcaaggttcagtcactagacaacagaatctggaaaggagaggaggaactccagtgcttgttttctattcgggagaagtttatgaaccaatagatatctaaagtttgaagagttctggaagatgagcatttgtaagcttagtcctcttgctaatctcatgcttcttctttttggttttgggcttgggagcaatgccatggacttgtgccattgcccttctctttgcagtgttggtagcaggtttcatcccgttcttctgcagatccctttcgatatcaagcatgtcacgtggtaattcaatacctctgaatagctgtttcaaatcatcatcaaccttaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88120" stop="86928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87822" g_stop="87228" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E260262" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87822" e_stop="87228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAATCGTAATATATATTGATATTAAACAATATGATACAAAATGATGTTGATCTTCATGAACATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACACAACCTTGTGAATAGGAACCAAACACCAAGGCTTTAGCCATTCGTAAAGAACTCTTCATGCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACTAGACAACAGAATCTGGAAAGGAGAGGAGGAACTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAAGCTTAGTCCTCTTGCTAATCTCATGCTTCTTCTTTTTGGTTTTGGGCTTGGGAGCAATGCCATGGACTTGTGCCATTGCCCTTCTCTTTGCAGTGTTGGTAGCAGGTTTCATCCCGTTCTTCTGCAGATCCCTTTCGATATCAAGCATGTCACGTGGTAATTCAATACCTCTGAATAGCTGTTTCAAATCATCATCAACCTTAATGG</genome_strand>
        <mrna_strand>TTTTTTAATCGTAATATATATTGATATTAAACAATATGATACAAAATGATGTTGATCTTCATGAACATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACACAACCTTGTGAATAGGAACCAAACACCAAGGCTTTAGCCATTCGTAAAGAACTCTTCATGCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACTAGACAACAGAATCTGGAAAGGAGAGGAGGAACTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAAGCTTAGTCCTCTTGCTAATCTCATGCTTCTTCTTTTTGGTTTTGGGCTTGGGAGCAATGCCATGGACTTGTGCCATTGCCCTTCTCTTTGCAGTGTTGGTAGCAGGTTTCATCCCGTTCTTCTGCAGATCCCTTTCGATATCAAGCATGTCACGTGGTAATTCAATACCTCTGAATAGCTGTTTCAAATCATCATCAACCTTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257897" ref_strand="+" ref_description="SGN-E257897 [cLEG-39-J12]">
      <seq>ttttttaatcgtaatatatattgatattaaacaatatgatacaaaatgatgttgatcttgatgaacataacaatttgatggtccaaaaacccaagtcagtaataaaatcacaaattattagtatcatattcccaccccaagtttaccaggtcagtaaaaacaaaacacaaccttgtgaataggaaccaaacaccaaggctttagccattcgtaaagaactcttcatgctagacgtatggtaaagcattaggtattcaaggttcagtcactagacaacagaatctggaaaggagaggaggaactccagtgcttgttttctattcgggagaagtttatgaaccaatagatatctaaagtttgaagagttctggaagatgagcatttgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88120" stop="87135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87822" g_stop="87435" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E257897" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87822" e_stop="87435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAATCGTAATATATATTGATATTAAACAATATGATACAAAATGATGTTGATCTTCATGAACATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACACAACCTTGTGAATAGGAACCAAACACCAAGGCTTTAGCCATTCGTAAAGAACTCTTCATGCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACTAGACAACAGAATCTGGAAAGGAGAGGAGGAACTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAA</genome_strand>
        <mrna_strand>TTTTTTAATCGTAATATATATTGATATTAAACAATATGATACAAAATGATGTTGATCTTGATGAACATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACACAACCTTGTGAATAGGAACCAAACACCAAGGCTTTAGCCATTCGTAAAGAACTCTTCATGCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACTAGACAACAGAATCTGGAAAGGAGAGGAGGAACTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229788" ref_strand="+" ref_description="SGN-E229788 [cLEL-33-B7](-)">
      <seq>ctcatcttccagaactcttcaaactttagatatctattggttcataaacttctnccgaatagaaaacaagcactggagttcctcctctcctttccagattctgttgtctagtgactgaaccttgaatacctaatgctttaccatacgtctagcatgaagagttctttacgaatggctaaagccttggtgtttggttcctattcacaaggttgtgttttgtttttactgacctggtaaacttggggtgggaatatgatactaataatttgtgattttattactgacttgggtttttggaccatcaaattgttatgttcatgaagatcaacatcattttgtatcatattgtttaatatcaatatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87144" stop="88110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87444" g_stop="87810" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E229788" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87444" e_stop="87810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATT</genome_strand>
        <mrna_strand>CTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTNCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258941" ref_strand="-" ref_description="SGN-E258941 [cLEG-41-H21]">
      <seq>aaactttagatatctattggttcataaacttctcccgaatagaaaacaagcactggagttcctcctctcctttccagattctgttgtctagtgactgaaccttgaatacctaatgctttaccatacgtctagcatgaagagttctttacgaatggctaaagccttggtgtttggttcctattcacaaggttgtgttttgtttttactgacctggtaaacttggggtgggaatatgatactaataatttgtgattttattactgacttgggtttttggaccatcaaattgttatgttcatgaagatcaacatcattttgtatcatattgtttaatatcaatatatattacgattaaaattaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87164" stop="88127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87464" g_stop="87823" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="381"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E258941" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258941" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87464" e_stop="87823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTA</genome_strand>
        <mrna_strand>AAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230290" ref_strand="+" ref_description="SGN-E230290 [cLEL-33-B7](-)">
      <seq>tatctattggttcataaacttctnccgaatagaaaacaagcactggagttcctcctctcctttccagattctgttgtctagtgactgaaccttgaatacctaatgctttaccatacgtctagcatgaagagttctttacgaatggctaaagccttggtgtttggttcctattcacaaggttgtgttttgtttttactgacctggtaaacttggggtgggaatatgatactaataatttgtgattttattactgacttgggtttttggaccatcaaattgttatgttcatgaagatcaacatcattttgtatcatattgtttaatatcaatatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87174" stop="88110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87474" g_stop="87810" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-E230290" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87474" e_stop="87810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATT</genome_strand>
        <mrna_strand>TATCTATTGGTTCATAAACTTCTNCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238747" ref_strand="+" ref_description="SGN-E238747 [cLEL-9-H18](-)">
      <seq>ggtcactccacgtggtggaccgatgggtaaaattattgcaaccactgggcatgaggaagcagctctaattgctgaaattgattatgctgcgattcaatggacaagggaaagcctccctttggagagccagaagcgcaacgacatctatcaattcgtagacttgctcagagaaagtctcaactcctaagaggctttaagagcaggacatcttgatcagctagcatatcatagttctgaaataggtatttgtgggagttcttaccaagaaagttgttttgcttattttgttggcaatcatggttgtatcttctttttatggtcattccaaaagacattagttaacaaatctggtaaagtttggcatctcttcaagacactaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88905" stop="87858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88706" g_stop="88683" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88682" i_stop="88596" i_length="87">
            <donor d_prob="0.859" d_score="0.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88595" g_stop="88513" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="105" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88512" i_stop="88433" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88432" g_stop="88159" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="379" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="400"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E238747" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88706" e_stop="88683"/>
          <exon e_start="88595" e_stop="88513"/>
          <exon e_start="88432" e_stop="88159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCACTCCACTGTGGTTGGACCGGTATGTTATGATATTACTAGTAGTTACTTTGGATTGCAGAGGTCTGTATAGAACGATCAAAGAGCTCTTTGTTTTTCTGGTTAGCAGATGGGTAAAATTATTGCAACCACTGGGCATGAGGAAGCAGCTCTAATTGCTGAAATTGATTATGCTGCGATTCAATGGACAAGGTGATGCATCATCTCGTTTAAAGATCGATTAGTAGTAGATCTTTACTTCTTTTTTCTCACTCTTTTCAAAGCTCGTGCAGGGAAAGCCTCCCTTTGGAGAGCCAGAAGCGCAACGACATCTATCAATTCGTAGACTTGCTCAGAGAAAGTCTCAACTCCTAAGAGGCTTTAAGAGCAGGACATCTTGATCAGCTAGCATATCATAGTTCTGAAATAGGTATTTGTGGGAGTTCTTACCAAGAAAGTTGTTTTGCTTATTTTGTTGGCAATCATGGTTGTATCTTCTTTTTATGGTCATTCCAAAAGACATTAGTTAACAAATCTGGTAAAGTTTGGCATCTCTTCAAGACACTT</genome_strand>
        <mrna_strand>GGTCACTCCAC-GTGG-TGGACCG.......................................................................................ATGGGTAAAATTATTGCAACCACTGGGCATGAGGAAGCAGCTCTAATTGCTGAAATTGATTATGCTGCGATTCAATGGACAAG................................................................................GGAAAGCCTCCCTTTGGAGAGCCAGAAGCGCAACGACATCTATCAATTCGTAGACTTGCTCAGAGAAAGTCTCAACTCCTAAGAGGCTTTAAGAGCAGGACATCTTGATCAGCTAGCATATCATAGTTCTGAAATAGGTATTTGTGGGAGTTCTTACCAAGAAAGTTGTTTTGCTTATTTTGTTGGCAATCATGGTTGTATCTTCTTTTTATGGTCATTCCAAAAGACATTAGTTAACAAATCTGGTAAAGTTTGGCATCTCTTCAAGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689240" ref_strand="+" ref_description="SGN-E689240 [t3_tus_80_L10]">
      <seq>ggcaacagttgctgttcagtcctttgtctctgctccactgcaaattcccaatgtaacacagttcaagattggaatttgtcagctgatagttaccacagagaagagtgcaaacatcttcaatgctcgtagtctgattcaaactgctgcagaacaaggtgcaactctnatacttttgcctgaaatgtggaattgcccttattcaactgacttgttcgcaaagtttgctgaggagttcagcgatatagacngtgccccatcattgcttatgttatctgaagtggcttcttccttaggagtcaccattataggtggatcgattccggaaaaggatgctggtcagctgtacaatagctgccctgtgtttgggcctaatggagagttgaaggctaagcacagaaaaatacatttgtttgacatgggtaagccacttccgggagaggtccaatttaaggaatcagttaacatttcagcaggagagaagcctacagttgttgatacagattttggacgcattggaataggaatttgtcatgatatacgatttcctgagctggcaatgtcatacagtgcccgaggtgctcatttaatatgttaccctggagcattcaacatgagtactggggcaaccctgtgggaactggagcanagaacaagggcagtagataaccagctttatgtggcatcttgctccctgtctcgagattcagccagtagctacatgatatggggtcactccactgtggttggaccgatgggtaaaattattgcaaccactgggcatgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91727" stop="88260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91427" g_stop="91367" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91366" i_stop="91295" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91294" g_stop="91178" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="178" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91177" i_stop="90295" i_length="883">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90294" g_stop="90073" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="400" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90072" i_stop="89776" i_length="297">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89775" g_stop="89676" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="500" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89675" i_stop="89286" i_length="390">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89285" g_stop="89211" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="575" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89210" i_stop="89133" i_length="78">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89132" g_stop="89054" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="654" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89053" i_stop="88873" i_length="181">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88872" g_stop="88857" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="670" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88856" i_stop="88764" i_length="93">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88763" g_stop="88683" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="751" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="88682" i_stop="88596" i_length="87">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="88595" g_stop="88560" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="787" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E689240" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91427" e_stop="91367"/>
          <exon e_start="91294" e_stop="91178"/>
          <exon e_start="90294" e_stop="90073"/>
          <exon e_start="89775" e_stop="89676"/>
          <exon e_start="89285" e_stop="89211"/>
          <exon e_start="89132" e_stop="89054"/>
          <exon e_start="88872" e_stop="88857"/>
          <exon e_start="88763" e_stop="88683"/>
          <exon e_start="88595" e_stop="88560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAATGTAACACAGGTCTGTTTTTCTTTTAAAATACCCTTTTGGTTTCTCCATCCAAAACATGACATTTTTTTTTAATAAAAACAGTTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTTATACTTTTGCCTGTGAGTAGCCTTTTCCTTCACTTAAACTCTTTTTAATTTTAGCTTTAAAGGGTGTTTTTGCTATGAAGGAAAATGTTCCTTTTAGGAAAAAAAGAAGGGGCTTTACTAATCCTAGAAGTATTTGTATATAATTTAGAGAAATACAGGGAGGACACGAGGGCATGGGTGGTGAGGATGGAGGTGAAGATGTGTTGAGTTGGAGGGCGGAAAGAACACAATCAATGTTGAGTGTCACATGTGAAGCTTGTTTCCCCTAGTTCTATCAACGAATTAACACAATCATTCTTCAGCTTCTCTCGTGTTTTCGTTATTTTTGACCCTCCTTGTTCATTTTTTCTTTTACATAATTTCTTTTGATAAATCTCATGCTGATTTATAAACTAAATGTAAAAAGTTGCACGTTATAATTTGTCCAATTTTAACTAATCAGACACTGTTGCATACGTTAACAACATGCACTTCATAAGACATTTACGCCTCAGTTGGTTTTAAGTAATTTGTCTATGCAATTGTTTACCCTGTTTGTGTATAAAACTTGAATTCTAAAAGAAGTTTGTTATATTTTTGGTTTTAGATCATCCATGCCTTTTACCTCTTTTACTCTTTGTTTATTCACTGTGGAAGTCTAGCATAGTGATTTGACCTTAACATGTTGACTAGCACATTGTTATTATTTCCAGAATAACGTTTGATGCTGTTGGCAGTTCTTTGTCTTCTTTCCGGCTATAGTTTTAAGAATGAAACTTTATATGAATTCTCATAAGTTCGGAAAGTATCAGCCTAAAGAAGTTCCTATCTGAAGATTGAAAACATATGGTCAAAGTGTATATCTTAATAGCAATGTTGGATGTGAGATTCAGTGTATTTCAATAATTTGTTGTAGGAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAAGTAAGCTTTTTCTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGCACAGAAAAGTAAGCTTTTTTTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGTGTTAAGCTAGTTCTCAAATGCTTTATGAAAGTGAAAGAATGAATATAATGATAAACTTTGGTTGCACCGAAAAGAAGTTAAAACAGGTGATTGGATGAAGAGAATAGCAAGATGAGCTAGAATTGTAATTGTGCAATGCCTTTCCGCAGATACATTTGTTTGACATGGGTAAGCCACTTCCGGGAGAGGTCCAATTTAAGGAATCAGTTAACATTTCAGCAGGAGAGAAGCCTACAGTTGTTGATACAGGTAGGTACAGGTAGGCAACTGTTTCCTGCTTAATGCATTGACTTCTAAGTTTGGTAACTTACAGTTTTAGTATGATCCATAGGTCCTTGAGGATATGATGTAATTCTTCTGTCTCTCAAATGTGAAACGTATCAACATTTTCTGTATCAGGAATCTCAAAAAATTAGCAGAAAAATGAGAAACTGTTATTCCTGCATCTGGCATGTTCATATATACATGTTGACATTTTCTCTACTCCCAATTCTGATTTAGGTCTCATTTTTTCCCGGCCAAACTTGTGTTGCTAGTAGTTTCAGCTTGCACTAAGATTCTTTCTTTAATTTCCCTGCCAGGCTTCCTACTTGAAACTGTACTTTTACAAGTCTTATAACGGAAAACTTCAATCTGCAGATTTTGGACGCATTGGAATAGGAATTTGTCATGATATACGATTTCCTGAGCTGGCAATGTCATACAGTGCCCGAGGTATGATGGTTTACATGCTTAAGTAGTTAGTAATCCTGTTCAACTAATTTTTCTCCTTAATTTTCATATGAGGATCAGGTGCTCATTTAATATGTTACCCTGGAGCATTCAACATGAGTACTGGGGCAACCCTGTGGGAACTGGAGCAAAGAACAAGGCAAGATGATTCTGTTTCGTGTAGTTGTAAATAGAGTTACCAATAAAGGTTTTCTTAAGTTCTTTAGTGTATATCAGTAAAGAGCGACCAATGCAGTTGCACACACTTATAGAATCAGGAACTCCGAATTTGCAAAGTTGTGTGCTGTATTCTTATTGCTCATTCAACTCCGATTTTGCAGGGCAGTAGATAACCAGGTAATACCATGTTGATTTATGATGATAGTCCTCTTTGTCTTTATGTGGCATCCTGCTCCCCATTGCGAAGCATGTTCACTGCATTTTTCGTAGCTTTATGTGGCATCTTGCTCCCTGTCTCGAGATTCAGCCAGTAGCTACATGATATGGGGTCACTCCACTGTGGTTGGACCGGTATGTTATGATATTACTAGTAGTTACTTTGGATTGCAGAGGTCTGTATAGAACGATCAAAGAGCTCTTTGTTTTTCTGGTTAGCAGATGGGTAAAATTATTGCAACCACTGGGCATGAGGAA</genome_strand>
        <mrna_strand>GGCAACAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAATGTAACACAG........................................................................TTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTNATACTTTTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACNGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAA.........................................................................................................................................................................................................................................................................................................ATACATTTGTTTGACATGGGTAAGCCACTTCCGGGAGAGGTCCAATTTAAGGAATCAGTTAACATTTCAGCAGGAGAGAAGCCTACAGTTGTTGATACAG......................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGACGCATTGGAATAGGAATTTGTCATGATATACGATTTCCTGAGCTGGCAATGTCATACAGTGCCCGAG..............................................................................GTGCTCATTTAATATGTTACCCTGGAGCATTCAACATGAGTACTGGGGCAACCCTGTGGGAACTGGAGCANAGAACAAG.....................................................................................................................................................................................GGCAGTAGATAACCAG.............................................................................................CTTTATGTGGCATCTTGCTCCCTGTCTCGAGATTCAGCCAGTAGCTACATGATATGGGGTCACTCCACTGTGGTTGGACCG.......................................................................................ATGGGTAAAATTATTGCAACCACTGGGCATGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325166" ref_strand="+" ref_description="SGN-E325166 [cTOC-13-B10]">
      <seq>gcaacagtttctgttcattcctttgtctctgctccactggaaattccgaatgtaacacagttcaagattggaatttgtcagctgatagttaccacagagaagagtgcaaacatcttcaatgctcgtagtctgattcaaactgctgcagaacaaggtgcaactcttatacttttgcctgaaatgtggaattgcccttattcaactgacttgttcgcaaagtttgctgaggagttcagcgatatagacagtgccccatcattgcttatgttatctgaagtggcttcttccttaggagtcaccattataggtggatcgattccggaaaaggatgctggtcagctgtacaatagctgccctgtgtttgggcctaatggagagttgaaggctaagcacagaaaaatacatttgtttgacatgggtaagccacttccgggagaggtccaatttaaggaatcagttaacatttcagcaggagagaagcctacagttgttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91726" stop="89379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91426" g_stop="91367" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91366" i_stop="91295" i_length="72">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91294" g_stop="91178" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="177" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91177" i_stop="90295" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90294" g_stop="90073" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="399" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90072" i_stop="89776" i_length="297">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89775" g_stop="89679" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="496" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E325166" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91426" e_stop="91367"/>
          <exon e_start="91294" e_stop="91178"/>
          <exon e_start="90294" e_stop="90073"/>
          <exon e_start="89775" e_stop="89679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAATGTAACACAGGTCTGTTTTTCTTTTAAAATACCCTTTTGGTTTCTCCATCCAAAACATGACATTTTTTTTTAATAAAAACAGTTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTTATACTTTTGCCTGTGAGTAGCCTTTTCCTTCACTTAAACTCTTTTTAATTTTAGCTTTAAAGGGTGTTTTTGCTATGAAGGAAAATGTTCCTTTTAGGAAAAAAAGAAGGGGCTTTACTAATCCTAGAAGTATTTGTATATAATTTAGAGAAATACAGGGAGGACACGAGGGCATGGGTGGTGAGGATGGAGGTGAAGATGTGTTGAGTTGGAGGGCGGAAAGAACACAATCAATGTTGAGTGTCACATGTGAAGCTTGTTTCCCCTAGTTCTATCAACGAATTAACACAATCATTCTTCAGCTTCTCTCGTGTTTTCGTTATTTTTGACCCTCCTTGTTCATTTTTTCTTTTACATAATTTCTTTTGATAAATCTCATGCTGATTTATAAACTAAATGTAAAAAGTTGCACGTTATAATTTGTCCAATTTTAACTAATCAGACACTGTTGCATACGTTAACAACATGCACTTCATAAGACATTTACGCCTCAGTTGGTTTTAAGTAATTTGTCTATGCAATTGTTTACCCTGTTTGTGTATAAAACTTGAATTCTAAAAGAAGTTTGTTATATTTTTGGTTTTAGATCATCCATGCCTTTTACCTCTTTTACTCTTTGTTTATTCACTGTGGAAGTCTAGCATAGTGATTTGACCTTAACATGTTGACTAGCACATTGTTATTATTTCCAGAATAACGTTTGATGCTGTTGGCAGTTCTTTGTCTTCTTTCCGGCTATAGTTTTAAGAATGAAACTTTATATGAATTCTCATAAGTTCGGAAAGTATCAGCCTAAAGAAGTTCCTATCTGAAGATTGAAAACATATGGTCAAAGTGTATATCTTAATAGCAATGTTGGATGTGAGATTCAGTGTATTTCAATAATTTGTTGTAGGAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAAGTAAGCTTTTTCTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGCACAGAAAAGTAAGCTTTTTTTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGTGTTAAGCTAGTTCTCAAATGCTTTATGAAAGTGAAAGAATGAATATAATGATAAACTTTGGTTGCACCGAAAAGAAGTTAAAACAGGTGATTGGATGAAGAGAATAGCAAGATGAGCTAGAATTGTAATTGTGCAATGCCTTTCCGCAGATACATTTGTTTGACATGGGTAAGCCACTTCCGGGAGAGGTCCAATTTAAGGAATCAGTTAACATTTCAGCAGGAGAGAAGCCTACAGTTGTTGATA</genome_strand>
        <mrna_strand>GCAACAGTTTCTGTTCATTCCTTTGTCTCTGCTCCACTGGAAATTCCGAATGTAACACAG........................................................................TTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTTATACTTTTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAA.........................................................................................................................................................................................................................................................................................................ATACATTTGTTTGACATGGGTAAGCCACTTCCGGGAGAGGTCCAATTTAAGGAATCAGTTAACATTTCAGCAGGAGAGAAGCCTACAGTTGTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447046" ref_strand="+" ref_description="SGN-E447046 [cSTA-24-A20]">
      <seq>atttatctgctcttccatggcaacagttgctgttcagtcctttgtctctgctccactgcaaattcccaaaataacaaagttcaagattggaatttgtcagctgaaagttaccacagagaagagtgcaaacatcttcaatgctcgtagtctgattcaagctgctgcagaacaaggtgcaagtctcatacttttgcctgaaatgtggaattgcccttattcaactgacttgtttgcaaagtttgctgaagacttcagcgatatagacagtgccccatcattgcttatgttatctgaagcggcttcttccttaggagtcaccattataggtggatcgattccggaaaaggatgctggtcagctgtacaatagttgccctgtgtttgggcctaatggagagttgaaggctaagcacagaaaaatacatttgtttgacatgggtaagccactgccaggagaagttcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91741" stop="89428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91445" g_stop="91367" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91366" i_stop="91295" i_length="72">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91294" g_stop="91178" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91177" i_stop="90295" i_length="883">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90294" g_stop="90073" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="418" r_length="222" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90072" i_stop="89776" i_length="297">
            <donor d_prob="0.550" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89775" g_stop="89728" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="466" r_length="48" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E447046" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91445" e_stop="91367"/>
          <exon e_start="91294" e_stop="91178"/>
          <exon e_start="90294" e_stop="90073"/>
          <exon e_start="89775" e_stop="89728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCTGCACTTCCATGGCAACAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAATGTAACACAGGTCTGTTTTTCTTTTAAAATACCCTTTTGGTTTCTCCATCCAAAACATGACATTTTTTTTTAATAAAAACAGTTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTTATACTTTTGCCTGTGAGTAGCCTTTTCCTTCACTTAAACTCTTTTTAATTTTAGCTTTAAAGGGTGTTTTTGCTATGAAGGAAAATGTTCCTTTTAGGAAAAAAAGAAGGGGCTTTACTAATCCTAGAAGTATTTGTATATAATTTAGAGAAATACAGGGAGGACACGAGGGCATGGGTGGTGAGGATGGAGGTGAAGATGTGTTGAGTTGGAGGGCGGAAAGAACACAATCAATGTTGAGTGTCACATGTGAAGCTTGTTTCCCCTAGTTCTATCAACGAATTAACACAATCATTCTTCAGCTTCTCTCGTGTTTTCGTTATTTTTGACCCTCCTTGTTCATTTTTTCTTTTACATAATTTCTTTTGATAAATCTCATGCTGATTTATAAACTAAATGTAAAAAGTTGCACGTTATAATTTGTCCAATTTTAACTAATCAGACACTGTTGCATACGTTAACAACATGCACTTCATAAGACATTTACGCCTCAGTTGGTTTTAAGTAATTTGTCTATGCAATTGTTTACCCTGTTTGTGTATAAAACTTGAATTCTAAAAGAAGTTTGTTATATTTTTGGTTTTAGATCATCCATGCCTTTTACCTCTTTTACTCTTTGTTTATTCACTGTGGAAGTCTAGCATAGTGATTTGACCTTAACATGTTGACTAGCACATTGTTATTATTTCCAGAATAACGTTTGATGCTGTTGGCAGTTCTTTGTCTTCTTTCCGGCTATAGTTTTAAGAATGAAACTTTATATGAATTCTCATAAGTTCGGAAAGTATCAGCCTAAAGAAGTTCCTATCTGAAGATTGAAAACATATGGTCAAAGTGTATATCTTAATAGCAATGTTGGATGTGAGATTCAGTGTATTTCAATAATTTGTTGTAGGAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAAGTAAGCTTTTTCTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGCACAGAAAAGTAAGCTTTTTTTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGTGTTAAGCTAGTTCTCAAATGCTTTATGAAAGTGAAAGAATGAATATAATGATAAACTTTGGTTGCACCGAAAAGAAGTTAAAACAGGTGATTGGATGAAGAGAATAGCAAGATGAGCTAGAATTGTAATTGTGCAATGCCTTTCCGCAGATACATTTGTTTGACATGGGTAAGCCACTTCCGGGAGAGGTCCAATTT</genome_strand>
        <mrna_strand>ATTTATCTGCTCTTCCATGGCAACAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAAAATAACAAAG........................................................................TTCAAGATTGGAATTTGTCAGCTGAAAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAGCTGCTGCAGAACAAGGTGCAAGTCTCATACTTTTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGGAATTGCCCTTATTCAACTGACTTGTTTGCAAAGTTTGCTGAAGACTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGCGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGTTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAA.........................................................................................................................................................................................................................................................................................................ATACATTTGTTTGACATGGGTAAGCCACTGCCAGGAGAAGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447054" ref_strand="+" ref_description="SGN-E447054 [cSTA-24-C22]">
      <seq>atttatctgcacttccatggcaaccagttgctgttcagtcctttgtctctgctccactgcaaattcccaaaataacaaagttcaagattggaatttgtcagctgaaagttaccacagagaagagtgcaaacatcttcaatgctcgtagtctgattcaagctgctgcagaacaaggtgcaagtctcataccttttgcctgaaatgtggaattgcccttattcaactgacttgtttgcaaagtttgctgaagacttcagcgatatagacagtgccccatcattgcttatgttatctgaagtggcttcttccttaggagtcaccattataggtggatcgattccggaaaaggatgctggtcagctgtacaatagttgccctgtgtttgggcctaatggagagttgaaggctaagcacagaaaaatacatttgtttgacatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91741" stop="89456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91445" g_stop="91367" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91366" i_stop="91295" i_length="72">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91294" g_stop="91178" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="198" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91177" i_stop="90295" i_length="883">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90294" g_stop="90073" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="420" r_length="222" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90072" i_stop="89776" i_length="297">
            <donor d_prob="0.550" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89775" g_stop="89756" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="440" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E447054" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91445" e_stop="91367"/>
          <exon e_start="91294" e_stop="91178"/>
          <exon e_start="90294" e_stop="90073"/>
          <exon e_start="89775" e_stop="89756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCTGCACTTCCATGGCAA-CAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAATGTAACACAGGTCTGTTTTTCTTTTAAAATACCCTTTTGGTTTCTCCATCCAAAACATGACATTTTTTTTTAATAAAAACAGTTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTTATA-CTTTTGCCTGTGAGTAGCCTTTTCCTTCACTTAAACTCTTTTTAATTTTAGCTTTAAAGGGTGTTTTTGCTATGAAGGAAAATGTTCCTTTTAGGAAAAAAAGAAGGGGCTTTACTAATCCTAGAAGTATTTGTATATAATTTAGAGAAATACAGGGAGGACACGAGGGCATGGGTGGTGAGGATGGAGGTGAAGATGTGTTGAGTTGGAGGGCGGAAAGAACACAATCAATGTTGAGTGTCACATGTGAAGCTTGTTTCCCCTAGTTCTATCAACGAATTAACACAATCATTCTTCAGCTTCTCTCGTGTTTTCGTTATTTTTGACCCTCCTTGTTCATTTTTTCTTTTACATAATTTCTTTTGATAAATCTCATGCTGATTTATAAACTAAATGTAAAAAGTTGCACGTTATAATTTGTCCAATTTTAACTAATCAGACACTGTTGCATACGTTAACAACATGCACTTCATAAGACATTTACGCCTCAGTTGGTTTTAAGTAATTTGTCTATGCAATTGTTTACCCTGTTTGTGTATAAAACTTGAATTCTAAAAGAAGTTTGTTATATTTTTGGTTTTAGATCATCCATGCCTTTTACCTCTTTTACTCTTTGTTTATTCACTGTGGAAGTCTAGCATAGTGATTTGACCTTAACATGTTGACTAGCACATTGTTATTATTTCCAGAATAACGTTTGATGCTGTTGGCAGTTCTTTGTCTTCTTTCCGGCTATAGTTTTAAGAATGAAACTTTATATGAATTCTCATAAGTTCGGAAAGTATCAGCCTAAAGAAGTTCCTATCTGAAGATTGAAAACATATGGTCAAAGTGTATATCTTAATAGCAATGTTGGATGTGAGATTCAGTGTATTTCAATAATTTGTTGTAGGAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAAGTAAGCTTTTTCTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGCACAGAAAAGTAAGCTTTTTTTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGTGTTAAGCTAGTTCTCAAATGCTTTATGAAAGTGAAAGAATGAATATAATGATAAACTTTGGTTGCACCGAAAAGAAGTTAAAACAGGTGATTGGATGAAGAGAATAGCAAGATGAGCTAGAATTGTAATTGTGCAATGCCTTTCCGCAGATACATTTGTTTGACATGGG</genome_strand>
        <mrna_strand>ATTTATCTGCACTTCCATGGCAACCAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAAAATAACAAAG........................................................................TTCAAGATTGGAATTTGTCAGCTGAAAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAGCTGCTGCAGAACAAGGTGCAAGTCTCATACCTTTTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGGAATTGCCCTTATTCAACTGACTTGTTTGCAAAGTTTGCTGAAGACTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGTTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAA.........................................................................................................................................................................................................................................................................................................ATACATTTGTTTGACATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572146" ref_strand="+" ref_description="SGN-E572146 [31253]">
      <seq>gccacgatgatatctgatggtcagaggccttttgatgtgtttgctgaagagcttgggtctgcagagcttttcacccaggagtctaagttcttaacttatgggaatggtaaagacaagcctgctactggcatcatgttcgagaaggagcaaatgcacgggctatatttcaatcagtcccctacaaaggatgttgctttagcaatggtttctatgagacctattcctcttggtccaatgatggacaagctatccctgacacctgaaaagtatggagctagtcgtagattttatatccagacattggatgatcatgctctttcaccagatgtccaagaaaagcttgtgagggtaaaccctcctgaaggagttttcaagatcaaaggcagtgaccattctccattcttctcgaagccacagtcactgcataagattttggttgaaattgcgcagattccataatgttaatttctcaggggggagtttctttcatagcgagaatgacttcattgattcttatggaggccatgaggttgttggttgtacagaagaggagaatgactcagcttgttttatatccattttcatattttatttcacttctaacattttaagcattggttcatagttgaaatattcttcttgtagagttaaagctaagatagcaatttgacttgaaaatatttctcatgtaattccacctgcggctaacacttttcttctctctatggttgatttatttcttgaagatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95151" stop="91710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94851" g_stop="94801" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94800" i_stop="93798" i_length="1003">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93797" g_stop="93663" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="186" r_length="135" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93662" i_stop="92507" i_length="1156">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92506" g_stop="92010" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="675" r_length="489" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-E572146" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94851" e_stop="94801"/>
          <exon e_start="93797" e_stop="93663"/>
          <exon e_start="92506" e_stop="92010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACGATGATATCTGATGGTCAGAGGCCTTTTGATGTGTTCGCTGAAGAGGTACGCATCCGTTATTTTGTATATATTTCATAACAATTACCGAGGATGGTTACCAACCATTTATTCTGACTTTGATTGGGAAACCAGTTGAATTATTTAATAGTTGCACTTTTTAAAGTGCATGTATAAAAGTATTTTGTTTAGCAGCAGAGTTGCTCCTGGTATTTCACAAACATTGTTATGGTCATACCTTCAGAAAACACTGTTTATGTCATGATGTGATCTTGTATGATATTCTTGTTTCATCATATGGAGTGGTTGAAGTTAAGAATATTTCAAGAGAAAAATATACGAACGTGTGAGGCACATGCTCCAGAAATAAGAGGTCAATAAACTGTCATTTGAAACTTCTGTAGTTCTTAAGCATGACAAAAATAGCACCAAACTGCATAGCAAGTAACTGAATGCAAATTCCTGATCTCTGGTCAGGTAGGTAAAATAGGAATTTTGCTAGTTTCAGAATATCTGACCCAATTTATGTACATTAGTTAACAAAAGTAGGGGCTTGTACATAATTTGGAGCTCAAAAGGTAAGAATAGGACTAAGTACAATAAGAAGTGATGTCTGATATTGACTGATAGTGACTGCTGCTTCATCAGTTCAGTCCACATCCCAAATTTGCATTCTACTGACTGGCTGGTTAATATGCTTGCATATATATTTGAAATCTTATTGCGTTATAATCTGCTGATGATGGGAATTTGTGACGATCACTGTAGACTGATGTAGGAATTGTATTGAGTTTTGAATTGGTTCATCTAAGTTCAATTAACCATGCCACAATTTTCTTCATGCATGATTCATGATGTTTAAAGACGTTGCAGATATATATTACAAAATTACTGGTGGATTAGGTGTCATTCATTATAACCTATCAATTTGAGCTCATTAAGGATTTGTTTGGTCTCAAAAATAGATCTGCTTCTGAAAGTTTCTTCTAGTGTCAATAATTCTTTTATATCTCCTCTCCATTTTGATGTTTTCATATTGTTAATTTTGCAGCTTGGGTCCGCAGAGCTTTTCACCCAGGAATCTAAGTTTTTAACTTATGGGAATGGTAAAGACAAGCCTGCCACTGGCATCATGTTCGAGAAGGAGCAAATGCATGGGCTATATTTTAATCAGTCTCCTTCAAAGGTACTTCCTTTATACAAGTTGCAAGGAGTCATAATTGATATATATAACTTATACACAAAAGCTCAACATTATTGGTAAATATTTGATTTATAAAATCTTAATAATTCATTGATCGAGACAATAATTTAAATGCTAAAGATGTGTGGAAATGTGTTTTGGAGTGCATTGTTCTATGCTGTTTGAATTGAGACTACCGTAGAAACTAGAAATGACGACTGAAAATACAGAGGCATCACTGCTCGGTCAAAACAAATGCAACTTCTCTCTGTGTGTGTATGGGGTAGTGGGAGTAGCAGTATGATGAAATTTTTTCTCATGATGGCATGTTTGTCATGTCATATACATCACCTAAAGGTAATAGGCAACATAATGGACAACAATATAAATGTCGGTTCTGGTTGCACTTATACAAGAATTTGGTAGTTGGATCATGTTGTTTGAGTTAACAAGTTCAGTAGAAAGTAATGTTGGGCCTGTACCTGCTTTGAATTCATAGAACAACTCATCACTTTTAGAATTGGAAAATGATTATTTACACCGCAACTGAAAAAAGAAGAAGGTGAACAGTAAAACCTCCATATACTACAAATTAAGCAAATCAAAGTGTAGAAGATGGAGCATGAAAGGTTTTTTTGGAGCTCGACTAGTATTTTAATTGTTGTACTAGAGTAGTGAAAACACTTCAACGAGCTCAAAGTAAAATACATAAAACTGAAAAGGGGCTTATTTTTCTTAATTTTACTGGGAGAATATGCTTACACTATGGATCTTGATCATCGACTTCTTGTGGTAACATAGATAAGTTGACTACATCAGAATCGATCCGGTTTCCTTCAGAGTTTGGTGTAAATTATGATTTCAACATTTAATTATAGCCAATTTCAGAAGTTAAGTTATTGACGAAGAAGCACCCAAGGGTGTGGCCTAGTGGTCAATGAAGTACAGGTGGTAAACCAAGAGGTCTCTGGTTCAAATCCCAAACAGAGCGAAAAACATTAGGAAATTTCTTTCCATCCTCCTTGGTGGAAGAGGTATTCAGTACCAAGGAATCCTTGTGTGTATTTTACTGTCTAGATATATGTTTTCCAAGAAGTTAGAGAATGTAAATAGAAGGTTTCACGAAAATAATCATTAACAAGTTATGTAATGATTGCAGGATGTTGCGTTAGCAATGGTTTCTATGAGACCTATTCCTCTTGGTCCGATGATGGACAAGCTGTCACTGACACCTGAAAAGTATGGAACTAGTCGTAGATTTTATATCCAGACATTGGATGATCATGCTCTTTCACCAGATGTCCAAGAAAAGCTTGTGAGGGTAAACCCTCCTGAAGGAGTTTTCAAGATCAAAGGCAGTGACCATTCTCCATTCTTCTCAAAGCCACAGTCACTGCATAAGATTTTGGTTGAAATTGCGCAGATTCCATGATGTTAATTTCTC-TGGGGAAGTTTTTTTCATAGCAAGAGTGGCTTCATTGATTCTTATGGAGGCTGTAGAATCCATGAGGTTGTTGGTTGTACAGAAGAGGAGAATGACTCAGCTTGTTTTAAATCCATTTTCATATTTTATTTCACTTTTATCATTTTAGGCATTGGTTCATAGTTGAAATATTCTTCTTGTAGAGTTACAGCTAAGATAGCAATTTGACTTGA</genome_strand>
        <mrna_strand>GCCACGATGATATCTGATGGTCAGAGGCCTTTTGATGTGTTTGCTGAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGGTCTGCAGAGCTTTTCACCCAGGAGTCTAAGTTCTTAACTTATGGGAATGGTAAAGACAAGCCTGCTACTGGCATCATGTTCGAGAAGGAGCAAATGCACGGGCTATATTTCAATCAGTCCCCTACAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGCTTTAGCAATGGTTTCTATGAGACCTATTCCTCTTGGTCCAATGATGGACAAGCTATCCCTGACACCTGAAAAGTATGGAGCTAGTCGTAGATTTTATATCCAGACATTGGATGATCATGCTCTTTCACCAGATGTCCAAGAAAAGCTTGTGAGGGTAAACCCTCCTGAAGGAGTTTTCAAGATCAAAGGCAGTGACCATTCTCCATTCTTCTCGAAGCCACAGTCACTGCATAAGATTTTGGTTGAAATTGCGCAGATTCCATAATGTTAATTTCTCAGGGGGGAGTTTCTTTCATAGCGAGAATGACTTCATTGATTCTTATGGA----G--G---CCATGAGGTTGTTGGTTGTACAGAAGAGGAGAATGACTCAGCTTGTTTTATATCCATTTTCATATTTTATTTCACTTCTAACATTTTAAGCATTGGTTCATAGTTGAAATATTCTTCTTGTAGAGTTAAAGCTAAGATAGCAATTTGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>148</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7065" PGL_stop="6437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7065" e_stop="7024"/>
            <exon e_start="6849" e_stop="6437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7065" e_stop="7024" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7023" i_stop="6850" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6849" e_stop="6437" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7065" stop="7024"/>
              <exon start="6849" stop="6437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAGTATTTGCAGATAGCATTCATAATCCAACAAAATACG : GTTTTAAGATATCAGAGACGGCTTGTTGTGGAACTGGTCCGTTTCGAGGGATTCTTAGTTGTGGAGGGAAGAGGCAGGTAAAAGAGTATGAGTTATGTAAGAATGTGAAAGACTACTTGTTTTTTGACTCTGTTCATCCCAGTGAACTGGCCTACCAACAATACGCTGCATTACTGTGGAATGGAACTACAGATGTCGTAGCACCTCACAACCTAAAATCCTTTTTTGAAAGTTCGAACTCCAGATGTCCTAGCAGCTTACAATTCCTACTATATATGAAGAATAAACAACAATGTGAAATATGATGTTAAGGAGCTTCATCTCTAGTAATTTTTCTGTTCTTGTGTAATCAAATATTTTGGCTGTACGCTCTCGTGCTTAAATAATCTAGAACTTCTTGACTGCCATGTGTA</gDNA_template>
            <first_frame> S  K  Y  L  Q  I  A  F  I  I  Q  Q  N  T  :  V  L  R  Y  Q  R  R  L  V  V  E  L  V  R  F  E  G  F  L  V  V  E  G  R  G  R  *  K  S  M  S  Y  V  R  M  *  K  T  T  C  F  L  T  L  F  I  P  V  N  W  P  T  N  N  T  L  H  Y  C  G  M  E  L  Q  M  S  *  H  L  T  T  *  N  P  F  L  K  V  R  T  P  D  V  L  A  A  Y  N  S  Y  Y  I  *  R  I  N  N  N  V  K  Y  D  V  K  E  L  H  L  *  *  F  F  C  S  C  V  I  K  Y  F  G  C  T  L  S  C  L  N  N  L  E  L  L  D  C  H  V   </first_frame>
            <second_frame>  Q  S  I  C  R  *  H  S  *  S  N  K  I  R :   F  *  D  I  R  D  G  L  L  W  N  W  S  V  S  R  D  S  *  L  W  R  E  E  A  G  K  R  V  *  V  M  *  E  C  E  R  L  L  V  F  *  L  C  S  S  Q  *  T  G  L  P  T  I  R  C  I  T  V  E  W  N  Y  R  C  R  S  T  S  Q  P  K  I  L  F  *  K  F  E  L  Q  M  S  *  Q  L  T  I  P  T  I  Y  E  E  *  T  T  M  *  N  M  M  L  R  S  F  I  S  S  N  F  S  V  L  V  *  S  N  I  L  A  V  R  S  R  A  *  I  I  *  N  F  L  T  A  M  C  </second_frame>
            <third_frame>   K  V  F  A  D  S  I  H  N  P  T  K  Y   : G  F  K  I  S  E  T  A  C  C  G  T  G  P  F  R  G  I  L  S  C  G  G  K  R  Q  V  K  E  Y  E  L  C  K  N  V  K  D  Y  L  F  F  D  S  V  H  P  S  E  L  A  Y  Q  Q  Y  A  A  L  L  W  N  G  T  T  D  V  V  A  P  H  N  L  K  S  F  F  E  S  S  N  S  R  C  P  S  S  L  Q  F  L  L  Y  M  K  N  K  Q  Q  C  E  I  *  C  *  G  A  S  S  L  V  I  F  L  F  L  C  N  Q  I  F  W  L  Y  A  L  V  L  K  *  S  R  T  S  *  L  P  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7063" stop="7024"/>
                    <exon start="6849" stop="6545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVFADSIHNPTKYGFKISETACCGTGPFRGILSCGGKRQVKEYELCKNVKDYLFFDSVHPSELAYQQYAALLWNGTTDVVAPHNLKSFFESSNSRCPSSLQFLLYMKNKQQCEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8137" PGL_stop="7270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8137" e_stop="7908"/>
            <exon e_start="7836" e_stop="7715"/>
            <exon e_start="7630" e_stop="7412"/>
            <exon e_start="7288" e_stop="7270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8137" e_stop="7908" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7907" i_stop="7837" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7836" e_stop="7715" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7714" i_stop="7631" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7630" e_stop="7412" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.969">
            <gDNA_intron_boundary i_start="7411" i_stop="7289" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="0.947">
            <gDNA_exon_boundary e_start="7288" e_stop="7270" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="7908"/>
              <exon start="7836" stop="7715"/>
              <exon start="7630" stop="7412"/>
              <exon start="7288" stop="7270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8136" stop="7908"/>
              <exon start="7836" stop="7715"/>
              <exon start="7630" stop="7425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAGTTTGTGCATCTTTGTTTTGGTTACACACTTTGCCACACCAATTGTGTGCCATGAAAGAGCTGCCCTTTTTGTGTTCGGTGATTCGGTTTTCGATTCTGGAAATAATAAGTACATCAACGCCACTGCTGACTTGCAGGGAAGTAATTACTTTCCTTATGGAGAATCATTCTTTAAGCATCCTACTGGCAGGGTGTCTAATGGACGCCTTATTCCTGATTTTATCG : CTGAATATGCTAATTTGCCATTTATTCCGCCCTACTTTGAAATTGGGAAGAAACAATTGATTCATGGGGTAAACTTTGCATCAGCCGGTTCTGGTTGTTTGGCGGAAACTAGTGGTGCCATT : GTTCTAAAAACTCAGTTGAAGAATTTTGAAAATGTGATACAACTGTTGAAGAGGAAAATGGGGAAAACAGAGTCCCATAAAATCCTGGCAAATGCAGTATATATTTTTAGCACTGGTAGCAATGACATGTTTGCCTCTTTAGTACCAAATTCGACTTTTCCATATTCCGATAGAGAATATCTACAGATGATTATGGGCAACTTGACTTCTGTTTTAAAG : GGAGTTTATAAAGGAGGAG</gDNA_template>
            <first_frame> L  K  F  V  H  L  C  F  G  Y  T  L  C  H  T  N  C  V  P  *  K  S  C  P  F  C  V  R  *  F  G  F  R  F  W  K  *  *  V  H  Q  R  H  C  *  L  A  G  K  *  L  L  S  L  W  R  I  I  L  *  A  S  Y  W  Q  G  V  *  W  T  P  Y  S  *  F  Y  R :   *  I  C  *  F  A  I  Y  S  A  L  L  *  N  W  E  E  T  I  D  S  W  G  K  L  C  I  S  R  F  W  L  F  G  G  N  *  W  C  H   : C  S  K  N  S  V  E  E  F  *  K  C  D  T  T  V  E  E  E  N  G  E  N  R  V  P  *  N  P  G  K  C  S  I  Y  F  *  H  W  *  Q  *  H  V  C  L  F  S  T  K  F  D  F  S  I  F  R  *  R  I  S  T  D  D  Y  G  Q  L  D  F  C  F  K   : G  S  L  *  R  R   </first_frame>
            <second_frame>  S  S  L  C  I  F  V  L  V  T  H  F  A  T  P  I  V  C  H  E  R  A  A  L  F  V  F  G  D  S  V  F  D  S  G  N  N  K  Y  I  N  A  T  A  D  L  Q  G  S  N  Y  F  P  Y  G  E  S  F  F  K  H  P  T  G  R  V  S  N  G  R  L  I  P  D  F  I   : A  E  Y  A  N  L  P  F  I  P  P  Y  F  E  I  G  K  K  Q  L  I  H  G  V  N  F  A  S  A  G  S  G  C  L  A  E  T  S  G  A  I  :  V  L  K  T  Q  L  K  N  F  E  N  V  I  Q  L  L  K  R  K  M  G  K  T  E  S  H  K  I  L  A  N  A  V  Y  I  F  S  T  G  S  N  D  M  F  A  S  L  V  P  N  S  T  F  P  Y  S  D  R  E  Y  L  Q  M  I  M  G  N  L  T  S  V  L  K  :  G  V  Y  K  G  G  </second_frame>
            <third_frame>   Q  V  C  A  S  L  F  W  L  H  T  L  P  H  Q  L  C  A  M  K  E  L  P  F  L  C  S  V  I  R  F  S  I  L  E  I  I  S  T  S  T  P  L  L  T  C  R  E  V  I  T  F  L  M  E  N  H  S  L  S  I  L  L  A  G  C  L  M  D  A  L  F  L  I  L  S  :  L  N  M  L  I  C  H  L  F  R  P  T  L  K  L  G  R  N  N  *  F  M  G  *  T  L  H  Q  P  V  L  V  V  W  R  K  L  V  V  P  L :   F  *  K  L  S  *  R  I  L  K  M  *  Y  N  C  *  R  G  K  W  G  K  Q  S  P  I  K  S  W  Q  M  Q  Y  I  F  L  A  L  V  A  M  T  C  L  P  L  *  Y  Q  I  R  L  F  H  I  P  I  E  N  I  Y  R  *  L  W  A  T  *  L  L  F  *  R :   E  F  I  K  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8136" stop="7908"/>
                    <exon start="7836" stop="7715"/>
                    <exon start="7630" stop="7412"/>
                    <exon start="7288" stop="7271"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLCIFVLVTHFATPIVCHERAALFVFGDSVFDSGNNKYINATADLQGSNYFPYGESFFKHPTGRVSNGRLIPDFIAEYANLPFIPPYFEIGKKQLIHGVNFASAGSGCLAETSGAIVLKTQLKNFENVIQLLKRKMGKTESHKILANAVYIFSTGSNDMFASLVPNSTFPYSDREYLQMIMGNLTSVLKGVYKGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14543" PGL_stop="13463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14543" e_stop="14378"/>
            <exon e_start="14233" e_stop="13463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14543" e_stop="14378" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14377" i_stop="14234" i_length="144"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="14233" e_stop="13463" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14543" stop="14378"/>
              <exon start="14233" stop="13585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14542" stop="14378"/>
              <exon start="14233" stop="13844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14064" stop="13463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATGGGTGAAACAGAGTCGAAACAGATCCTCTCCAACGCTGTATATATTTTCAGCCCTGCCAATAATGATTTCCTTTTCCCTTTCTTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCAACAGATGGTTATGGGAAATTTGACTTCTGTTTTGAAG : GGAATTTACAAGGAAGGAGGGAGAAAGTTTGTGATGTTTAATGTGGCTCCATTAGGATGTGTTCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTACGAATGGGAGTTGTATGGAGGAAGCAACAGACAAAGCGAAGACGTTTAATTCAGCTCTCCCAAGAATGTTTAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGTATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACAGGAATTGGTAGTAAGTAATCTTTTATCTTTAACCAAATTTCTCGGCTCGAGAAATGGTATGAAATCGCGTTTGTTAAGGAGCGTATGTAGGACTTCCTGGTTCAAATCCGGATTTAGTCTCCCCATGAGAAACCTTCAATAAAGTAAAAGAAAAAATAGGAATTGATCATAGAAAGATGAAGCATAAATCATATGTAGGTTTATTTTTTTTCTCTATTCACAGTACAAACTCTGTAGCAGAAATTTGATGGCTCTGCTAACAAAGTAGAATGTTGATGCAATAATCATAACAAAATGAAATCACACAAACCATATTAGAGATGAATAAAGTCAAATGTTTGATTGTTATATAAAAAATGTTCATTTTAATTTACTTAAAAG</gDNA_template>
            <first_frame> E  N  G  *  N  R  V  E  T  D  P  L  Q  R  C  I  Y  F  Q  P  C  Q  *  *  F  P  F  P  F  L  S  K  F  D  F  S  I  F  R  Y  R  I  S  T  D  G  Y  G  K  F  D  F  C  F  E   : G  N  L  Q  G  R  R  E  K  V  C  D  V  *  C  G  S  I  R  M  C  S  F  Y  E  G  S  Q  P  S  K  R  S  Y  E  W  E  L  Y  G  G  S  N  R  Q  S  E  D  V  *  F  S  S  P  K  N  V  *  K  T  R  E  A  I  A  W  I  *  V  Y  N  I  Q  L  L  Q  S  I  C  R  *  H  *  *  S  N  K  I  W  Y  L  L  S  H  *  I  Q  N  Q  V  S  L  C  S  I  I  Y  C  A  V  L  I  Y  V  R  I  A  V  L  P  R  V  Y  *  C  T  I  S  I  N  R  N  W  *  *  V  I  F  Y  L  *  P  N  F  S  A  R  E  M  V  *  N  R  V  C  *  G  A  Y  V  G  L  P  G  S  N  P  D  L  V  S  P  *  E  T  F  N  K  V  K  E  K  I  G  I  D  H  R  K  M  K  H  K  S  Y  V  G  L  F  F  F  S  I  H  S  T  N  S  V  A  E  I  *  W  L  C  *  Q  S  R  M  L  M  Q  *  S  *  Q  N  E  I  T  Q  T  I  L  E  M  N  K  V  K  C  L  I  V  I  *  K  M  F  I  L  I  Y  L  K  </first_frame>
            <second_frame>  K  M  G  E  T  E  S  K  Q  I  L  S  N  A  V  Y  I  F  S  P  A  N  N  D  F  L  F  P  F  L  A  N  L  T  S  P  Y  S  D  T  E  Y  Q  Q  M  V  M  G  N  L  T  S  V  L  K  :  G  I  Y  K  E  G  G  R  K  F  V  M  F  N  V  A  P  L  G  C  V  P  S  M  R  A  L  N  L  Q  K  G  V  T  N  G  S  C  M  E  E  A  T  D  K  A  K  T  F  N  S  A  L  P  R  M  F  K  K  L  E  K  Q  L  P  G  F  K  Y  T  I  F  N  F  F  K  V  F  A  D  S  I  N  N  P  T  K  Y  G  I  F  Y  L  I  E  F  K  I  K  Y  L  Y  V  R  L  Y  I  V  Q  C  *  F  M  *  E  *  L  F  Y  Q  E  F  T  N  V  Q  *  V  S  T  G  I  G  S  K  *  S  F  I  F  N  Q  I  S  R  L  E  K  W  Y  E  I  A  F  V  K  E  R  M  *  D  F  L  V  Q  I  R  I  *  S  P  H  E  K  P  S  I  K  *  K  K  K  *  E  L  I  I  E  R  *  S  I  N  H  M  *  V  Y  F  F  S  L  F  T  V  Q  T  L  *  Q  K  F  D  G  S  A  N  K  V  E  C  *  C  N  N  H  N  K  M  K  S  H  K  P  Y  *  R  *  I  K  S  N  V  *  L  L  Y  K  K  C  S  F  *  F  T  *  K </second_frame>
            <third_frame>   K  W  V  K  Q  S  R  N  R  S  S  P  T  L  Y  I  F  S  A  L  P  I  M  I  S  F  S  L  S  *  Q  I  *  L  L  H  I  P  I  Q  N  I  N  R  W  L  W  E  I  *  L  L  F  *  R :   E  F  T  R  K  E  G  E  S  L  *  C  L  M  W  L  H  *  D  V  F  L  L  *  G  L  S  T  F  K  K  E  L  R  M  G  V  V  W  R  K  Q  Q  T  K  R  R  R  L  I  Q  L  S  Q  E  C  L  K  N  *  R  S  N  C  L  D  L  S  I  Q  Y  S  T  S  S  K  Y  L  Q  I  A  L  I  I  Q  Q  N  M  V  S  S  I  S  L  N  S  K  S  S  I  F  M  F  D  Y  I  L  C  S  V  D  L  C  K  N  S  C  F  T  K  S  L  L  M  Y  N  K  Y  Q  Q  E  L  V  V  S  N  L  L  S  L  T  K  F  L  G  S  R  N  G  M  K  S  R  L  L  R  S  V  C  R  T  S  W  F  K  S  G  F  S  L  P  M  R  N  L  Q  *  S  K  R  K  N  R  N  *  S  *  K  D  E  A  *  I  I  C  R  F  I  F  F  L  Y  S  Q  Y  K  L  C  S  R  N  L  M  A  L  L  T  K  *  N  V  D  A  I  I  I  T  K  *  N  H  T  N  H  I  R  D  E  *  S  Q  M  F  D  C  Y  I  K  N  V  H  F  N  L  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14542" stop="14378"/>
                    <exon start="14233" stop="13901"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGETESKQILSNAVYIFSPANNDFLFPFLANLTSPYSDTEYQQMVMGNLTSVLKGIYKEGGRKFVMFNVAPLGCVPSMRALNLQKGVTNGSCMEEATDKAKTFNSALPRMFKKLEKQLPGFKYTIFNFFKVFADSINNPTKYGIFYLIEFKIKYLYVRLYIVQC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20985" PGL_stop="17323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20985" e_stop="20663"/>
            <exon e_start="17460" e_stop="17323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="20985" e_stop="20663" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20662" i_stop="17461" i_length="3202"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="17460" e_stop="17323" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20985" stop="20663"/>
              <exon start="17460" stop="17323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATAAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTTCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCTATACTGGACTACAGACTCTGCTTGTGTTGATATGGTGAATGCGGTTGAGAGCAATAGCTCTTCAACATTATG : GCTCCTCTTGGCCCGTGATTTTTTCCCTTATTCAGAAGGGTTTTCACGTAAAATTCTTGGCGTCGTTATTTTCCCATTTTATTTCCATTACATTTACCATATATACTTTTGTGCTTGTCCGTATTTTCCCAACAAGAA</gDNA_template>
            <first_frame> D  F  G  T  L  S  M  G  N  E  T  V  S  R  V  V  G  I  G  T  I  C  L  E  T  S  V  G  T  K  L  V  L  N  N  V  K  H  A  P  D  V  R  L  H  L  I  S  V  G  V  L  D  D  K  G  Y  V  S  T  N  G  D  G  K  W  K  L  I  K  G  F  L  V  V  A  R  G  N  K  R  R  G  L  Y  W  T  T  D  S  A  C  V  D  M  V  N  A  V  E  S  N  S  S  S  T  L  W :   L  L  L  A  R  D  F  F  P  Y  S  E  G  F  S  R  K  I  L  G  V  V  I  F  P  F  Y  F  H  Y  I  Y  H  I  Y  F  C  A  C  P  Y  F  P  N  K   </first_frame>
            <second_frame>  I  L  E  P  *  V  W  V  M  R  L  F  L  G  W  L  V  L  V  Q  F  V  W  K  L  V  L  E  L  N  *  F  *  T  M  *  N  M  L  L  M  F  V  C  T  *  F  L  L  V  F  *  M  I  K  D  M  L  V  P  T  V  M  E  N  G  S  S  L  R  V  S  W  L  W  L  V  V  T  N  V  V  V  Y  T  G  L  Q  T  L  L  V  L  I  W  *  M  R  L  R  A  I  A  L  Q  H  Y   : G  S  S  W  P  V  I  F  S  L  I  Q  K  G  F  H  V  K  F  L  A  S  L  F  S  H  F  I  S  I  T  F  T  I  Y  T  F  V  L  V  R  I  F  P  T  R  </second_frame>
            <third_frame>   F  W  N  L  E  Y  G  *  *  D  C  F  *  G  G  W  Y  W  Y  N  L  F  G  N  *  C  W  N  *  T  S  F  E  Q  C  E  T  C  S  *  C  S  S  A  P  N  F  C  W  C  F  R  *  *  R  I  C  *  Y  Q  R  *  W  K  M  E  A  H  *  G  F  L  G  C  G  S  W  *  Q  T  S  W  S  I  L  D  Y  R  L  C  L  C  *  Y  G  E  C  G  *  E  Q  *  L  F  N  I  M  :  A  P  L  G  P  *  F  F  P  L  F  R  R  V  F  T  *  N  S  W  R  R  Y  F  P  I  L  F  P  L  H  L  P  Y  I  L  L  C  L  S  V  F  S  Q  Q  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20985" stop="20663"/>
                    <exon start="17460" stop="17325"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFGTLSMGNETVSRVVGIGTICLETSVGTKLVLNNVKHAPDVRLHLISVGVLDDKGYVSTNGDGKWKLIKGFLVVARGNKRRGLYWTTDSACVDMVNAVESNSSSTLWLLLARDFFPYSEGFSRKILGVVIFPFYFHYIYHIYFCACPYFPNK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17659" e_stop="17453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="17659" e_stop="17453" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17659" stop="17453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACCATTTTGAGAGCAAAGTGAAGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAATGTAAAATTCCTTACTATAGTAATATTAGTTGCTCCTCT</gDNA_template>
            <first_frame> K  N  H  F  E  S  K  V  K  Y  S  I  D  Y  I  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  P  Y  Y  S  N  I  S  C  S  S </first_frame>
            <second_frame>  K  T  I  L  R  A  K  *  S  I  P  *  T  I  *  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  H  *  V  L  Y  S  *  L  H  N  V  K  F  L  T  I  V  I  L  V  A  P   </second_frame>
            <third_frame>   K  P  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  I  E  C  C  I  R  D  Y  T  M  *  N  S  L  L  *  *  Y  *  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0097J14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="22375" PGL_stop="22169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22375" e_stop="22169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="22375" e_stop="22169" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22375" stop="22169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACCATTTTGAGAGCAAAGTGAAGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAATGTAAAATTCCTTACTATAGTAATATTAGTTGCTCCTCT</gDNA_template>
            <first_frame> K  N  H  F  E  S  K  V  K  Y  S  I  D  Y  I  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  P  Y  Y  S  N  I  S  C  S  S </first_frame>
            <second_frame>  K  T  I  L  R  A  K  *  S  I  P  *  T  I  *  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  H  *  V  L  Y  S  *  L  H  N  V  K  F  L  T  I  V  I  L  V  A  P   </second_frame>
            <third_frame>   K  P  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  I  E  C  C  I  R  D  Y  T  M  *  N  S  L  L  *  *  Y  *  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0097J14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24587" PGL_stop="23575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24587" e_stop="24534"/>
            <exon e_start="24416" e_stop="24199"/>
            <exon e_start="24101" e_stop="23837"/>
            <exon e_start="23755" e_stop="23575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.374" e_score="0.815"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="0.890"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.936"/>
          <exon-only e_score="0.890"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.815">
            <gDNA_exon_boundary e_start="24587" e_stop="24534" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.374">
            <gDNA_intron_boundary i_start="24533" i_stop="24417" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.890">
            <gDNA_exon_boundary e_start="24416" e_stop="24199" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="24198" i_stop="24102" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="24101" e_stop="23837" e_length="265"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23836" i_stop="23756" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.890">
            <gDNA_exon_boundary e_start="23755" e_stop="23575" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24587" stop="24534"/>
              <exon start="24416" stop="24199"/>
              <exon start="24101" stop="23837"/>
              <exon start="23755" stop="23575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24587" stop="24534"/>
              <exon start="24416" stop="24199"/>
              <exon start="24101" stop="23837"/>
              <exon start="23755" stop="23687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAACTTTGCATCAGGTGGTTCGGGTTGTTTGGCTGAAACCGCTCGTGGCTTT : ATCTTCAAACTCAGTTGAAATATTTCCAAAATGTGGGAAAACTGTTGCAGAAGAAAGTGGGTGAAACAGAGTCGAAACAGATCCTCTCCAATGCTGTATATATTTTTAGCACTGTCAGTAATGATATGTTTGCCCCTTTATTTGCAAATTCGTCTTTTCCATATTCCGATACAGAATATTTACAGATGATTATGGGCAACTTAACTTCTGTTTTAAAG : GGAATTTACAAAGAAGGAGGGAGAAAGTTTGTGATGTTTAATTTGGCTCCATTAGGTTGTCTCCCTTTAATGAGAGCTCTCAACCTTCAAATTGGAGTTACAAATGGAAGTTGCATGGAGAAGGCCACAAACTTGGCCAAAATGTTTAATTCAGCTCTCCCAACAATGTTCAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTAATTGCAGATAGCATTCATAATCCAACAAAATACG : GTTTGAAGATATCAGAGACGGCTTGTTGTGGAACGGGTTCATTTCGAGGGATTCTAAGTTGTGGAGGGAAGAGGCAGGTAAAAGAGTACGAATTATGTAAGAATGTGAAAGATTACTTGTTTTTCGACTCTGTTCATCCCAGTGAGCAGGCCTACCTAAAATACACGGAATTATTATGGAA</gDNA_template>
            <first_frame> V  N  F  A  S  G  G  S  G  C  L  A  E  T  A  R  G  F  :  I  F  K  L  S  *  N  I  S  K  M  W  E  N  C  C  R  R  K  W  V  K  Q  S  R  N  R  S  S  P  M  L  Y  I  F  L  A  L  S  V  M  I  C  L  P  L  Y  L  Q  I  R  L  F  H  I  P  I  Q  N  I  Y  R  *  L  W  A  T  *  L  L  F  *  R :   E  F  T  K  K  E  G  E  S  L  *  C  L  I  W  L  H  *  V  V  S  L  *  *  E  L  S  T  F  K  L  E  L  Q  M  E  V  A  W  R  R  P  Q  T  W  P  K  C  L  I  Q  L  S  Q  Q  C  S  K  N  *  R  S  N  C  L  D  L  S  I  Q  Y  S  T  S  S  K  *  L  Q  I  A  F  I  I  Q  Q  N  T  :  V  *  R  Y  Q  R  R  L  V  V  E  R  V  H  F  E  G  F  *  V  V  E  G  R  G  R  *  K  S  T  N  Y  V  R  M  *  K  I  T  C  F  S  T  L  F  I  P  V  S  R  P  T  *  N  T  R  N  Y  Y  G  </first_frame>
            <second_frame>  *  T  L  H  Q  V  V  R  V  V  W  L  K  P  L  V  A  L :   S  S  N  S  V  E  I  F  P  K  C  G  K  T  V  A  E  E  S  G  *  N  R  V  E  T  D  P  L  Q  C  C  I  Y  F  *  H  C  Q  *  *  Y  V  C  P  F  I  C  K  F  V  F  S  I  F  R  Y  R  I  F  T  D  D  Y  G  Q  L  N  F  C  F  K   : G  N  L  Q  R  R  R  E  K  V  C  D  V  *  F  G  S  I  R  L  S  P  F  N  E  S  S  Q  P  S  N  W  S  Y  K  W  K  L  H  G  E  G  H  K  L  G  Q  N  V  *  F  S  S  P  N  N  V  Q  K  T  R  E  A  I  A  W  I  *  V  Y  N  I  Q  L  L  Q  S  N  C  R  *  H  S  *  S  N  K  I  R :   F  E  D  I  R  D  G  L  L  W  N  G  F  I  S  R  D  S  K  L  W  R  E  E  A  G  K  R  V  R  I  M  *  E  C  E  R  L  L  V  F  R  L  C  S  S  Q  *  A  G  L  P  K  I  H  G  I  I  M  E </second_frame>
            <third_frame>   K  L  C  I  R  W  F  G  L  F  G  *  N  R  S  W  L   : Y  L  Q  T  Q  L  K  Y  F  Q  N  V  G  K  L  L  Q  K  K  V  G  E  T  E  S  K  Q  I  L  S  N  A  V  Y  I  F  S  T  V  S  N  D  M  F  A  P  L  F  A  N  S  S  F  P  Y  S  D  T  E  Y  L  Q  M  I  M  G  N  L  T  S  V  L  K  :  G  I  Y  K  E  G  G  R  K  F  V  M  F  N  L  A  P  L  G  C  L  P  L  M  R  A  L  N  L  Q  I  G  V  T  N  G  S  C  M  E  K  A  T  N  L  A  K  M  F  N  S  A  L  P  T  M  F  K  K  L  E  K  Q  L  P  G  F  K  Y  T  I  F  N  F  F  K  V  I  A  D  S  I  H  N  P  T  K  Y   : G  L  K  I  S  E  T  A  C  C  G  T  G  S  F  R  G  I  L  S  C  G  G  K  R  Q  V  K  E  Y  E  L  C  K  N  V  K  D  Y  L  F  F  D  S  V  H  P  S  E  Q  A  Y  L  K  Y  T  E  L  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24549" stop="24534"/>
                    <exon start="24416" stop="24199"/>
                    <exon start="24101" stop="23837"/>
                    <exon start="23755" stop="23577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRSWLYLQTQLKYFQNVGKLLQKKVGETESKQILSNAVYIFSTVSNDMFAPLFANSSFPYSDTEYLQMIMGNLTSVLKGIYKEGGRKFVMFNLAPLGCLPLMRALNLQIGVTNGSCMEKATNLAKMFNSALPTMFKKLEKQLPGFKYTIFNFFKVIADSIHNPTKYGLKISETACCGTGSFRGILSCGGKRQVKEYELCKNVKDYLFFDSVHPSEQAYLKYTELLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40742" PGL_stop="44161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40742" e_stop="42174"/>
            <exon e_start="42255" e_stop="42379"/>
            <exon e_start="42459" e_stop="42600"/>
            <exon e_start="42804" e_stop="43364"/>
            <exon e_start="44131" e_stop="44152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="0.995"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="40742" e_stop="42174" e_length="1433"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42255" e_stop="42379" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42459" e_stop="42600" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42804" e_stop="43364" e_length="561"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43365" i_stop="44130" i_length="766"/>
          </intron>
          <exon e_serial="5" e_score="0.864">
            <gDNA_exon_boundary e_start="44131" e_stop="44152" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40742" stop="41401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40754" stop="41253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40825" stop="41587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40878" stop="41687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40885" stop="41500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40886" stop="41569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40888" stop="41264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40889" stop="41222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40891" stop="41496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40896" stop="41190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41037" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41175" stop="41953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41175" stop="41717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41381" stop="42131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41386" stop="41566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41441" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41451" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41496" stop="42036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41596" stop="42174"/>
              <exon start="42255" stop="42313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41753" stop="42033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41756" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41756" stop="42174"/>
              <exon start="42255" stop="42351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41757" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41820" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42006" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="42907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42268" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="43318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42269" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="43217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42355" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="43219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42460" stop="42600"/>
              <exon start="42804" stop="43364"/>
              <exon start="44131" stop="44152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42548" stop="42600"/>
              <exon start="42804" stop="43287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42550" stop="42600"/>
              <exon start="42804" stop="43364"/>
              <exon start="44131" stop="44152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42582" stop="42600"/>
              <exon start="42804" stop="43364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42826" stop="43277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42826" stop="43277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42849" stop="43310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42859" stop="43364"/>
              <exon start="44131" stop="44152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACCCCATTCTTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG : GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA : ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG : AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCT : AAAAACAAAAAAAAAAAGAAGA</gDNA_template>
            <first_frame> W  T  P  F  F  V  C  V  G  N  E  L  S  S  P  T  P  R  Q  T  V  L  F  T  S  S  Y  T  Y  K  P  S  L  L  P  P  F  S  P  L  P  T  N  S  S  I  H  *  *  K  S  I  L  *  A  F  F  V  S  G  Y  L  K  S  D  R  E  T  K  K  W  L  R  K  P  R  K  *  L  K  K  P  P  L  K  W  W  C  L  M  L  Q  *  G  R  H  L  N  L  S  R  K  L  C  R  S  H  R  R  K  M  L  L  R  S  L  E  N  R  R  L  R  M  K  R  R  R  N  L  L  V  N  P  I  R  L  R  K  K  V  T  R  L  K  N  F  L  I  L  N  K  K  H  W  L  N  S  N  R  W  F  K  K  L  L  T  S  M  N  S  L  P  L  L  L  R  R  R  Q  R  K  R  M  R  R  K  Q  P  F  P  P  R  H  R  R  Q  S  Q  L  Q  R  P  Q  R  R  R  H  L  I  Q  *  *  R  Q  N  R  N  R  W  P  R  R  K  L  K  Q  R  N  W  R  K  Q  R  R  K  *  L  H  R  K  L  K  Q  L  R  R  R  Q  Q  R  H  H  L  S  H  R  R  Q  R  R  W  R  Q  S  R  K  S  R  K  P  L  L  K  Y  R  L  R  L  L  *  W  P  P  R  R  S  H  R  L  Q  R  Q  R  N  R  K  Q  S  K  P  H  Q  Q  H  Q  K  K  Y  P  Y  G  E  Y  P  F  *  Q  M  R  E  V  M  *  S  F  S  S  F  C  E  R  E  I  S  R  *  K  K  L  S  P  C  *  K  V  L  S  H  G  E  K  N  S  R  L  M  N  S  W  M  R  K  N  *  D  K  D  L  K  K  L  F  T  I  T  E  *  T  K  K  V  T  L  Y  V  T  M  H  L  V  S  S  K  T  K  N  C  T  K  T  L  L  L  M  T  K  R  N  S  P  N  S  S  D  G  E  F  N  S  W  R  N  P  S  G  I  L  I  L  A  L  M  V  S  T  L  L  F  K  F  L  I  *  R  I  H  L  D  S  S  F  T  R  K  N  F  A  K  P  P  I  V  P  F  Y  Y  S  R  I  I  T  L  N  L  L  P  S  R :   C  S  S  M  F  H  G  G  T  Q  L  T  T  G  *  L  M  H  L  S  L  Q  G  P  R  A  S  L  F  L  L  V  L  Q  D  L  L  I  L  Y  S   : N  T  *  H  L  N  K  Y  Q  H  N  M  V  D  L  A  R  R  V  K  R  N  S  P  L  L  N  Q  P  L  R  K  S  L  S  Q  L  L  N  T  P  L  N  S  Q  L  L  R :   K  A  H  W  F  G  K  Q  E  *  Q  G  G  M  Y  H  M  E  L  N  L  C  L  V  L  K  V  A  T  P  F  S  *  R  N  Q  E  K  L  G  Q  M  N  Q  *  S  A  L  A  T  R  Q  V  K  Q  A  K  W  *  S  Q  L  T  T  K  L  L  K  R  R  N  L  F  T  G  P  R  T  R  S  Q  I  A  E  P  P  F  L  V  S  *  I  F  L  L  V  D  I  N  *  Y  Y  Y  F  E  L  F  G  G  I  Y  L  Y  F  I  G  V  I  F  *  A  I  L  L  L  D  C  F  F  Y  Y  M  G  N  I  Y  Y  I  T  K  G  L  R  C  G  V  Q  V  I  D  T  F  S  S  E  I  F  C  V  N  L  M  L  P  L  I  F  L  T  F  F  W  *  C  E  A  *  R  *  L  I  L  Y  L  C  F  L :   K  T  K  K  K  R  R </first_frame>
            <second_frame>  G  P  H  S  L  C  V  W  V  T  S  C  H  L  Q  L  L  G  R  L  F  C  S  L  L  L  I  H  I  N  P  H  F  Y  H  H  F  H  H  Y  Q  P  I  L  L  Y  I  N  K  N  P  F  F  K  P  F  S  F  L  G  I  *  N  L  I  G  K  P  R  N  G  *  G  N  Q  E  N  S  *  R  N  H  P  *  S  G  G  V  *  C  Y  S  E  G  D  T  S  T  *  A  G  N  F  A  G  V  T  G  E  R  C  C  S  G  H  W  R  I  E  G  *  G  *  K  G  E  G  T  C  W  *  I  Q  F  V  *  G  R  K  *  Q  G  *  R  T  S  *  S  *  T  K  S  I  G  *  I  Q  T  D  G  S  R  S  S  *  Q  A  *  I  H  C  P  S  S  S  A  A  G  K  G  R  G  *  E  E  S  S  R  S  R  R  G  T  G  G  R  A  S  Y  R  G  R  S  A  G  D  T  *  S  S  D  R  D  R  I  G  T  G  G  R  E  E  S  *  N  R  E  I  G  E  N  R  G  E  S  N  S  T  G  N  *  S  N  S  G  A  G  S  R  D  T  I  *  A  I  G  D  R  E  G  G  G  S  R  G  N  Q  G  N  H  C  *  S  T  G  C  G  C  C  D  G  L  H  G  G  A  T  G  C  R  G  R  G  T  E  N  R  A  N  P  T  S  S  T  R  R  S  I  H  M  G  N  T  P  F  S  R  *  E  K  *  C  N  P  S  Q  V  S  A  S  E  R  F  Q  G  E  R  S  F  H  H  V  E  K  C  C  R  M  E  K  R  I  Q  D  *  *  T  L  G  *  E  R  I  R  T  R  T  *  K  S  C  L  Q  S  R  S  R  Q  R  R  S  P  C  M  L  Q  C  I  W  *  V  P  R  Q  R  I  V  P  K  H  F  C  *  *  Q  R  E  T  H  Q  I  P  Q  M  E  N  S  I  H  G  E  I  H  Q  E  S  *  F  *  P  *  W  Y  Q  H  F  C  S  S  S  *  S  E  E  F  T  W  T  L  L  L  Q  E  R  T  S  P  S  H  Q  S  C  P  S  I  T  P  G  *  L  P  *  I  C  C  Q  A   : G  V  H  Q  C  S  M  V  V  P  S  L  L  Q  D  D  *  C  I  F  H  Y  K  D  Q  E  Q  V  C  F  C  W  S  F  K  I  C  *  Y  S  I  Q  :  I  H  S  T  *  T  S  T  S  T  I  W  W  T  *  Q  G  G  *  R  G  I  H  H  C  *  T  S  H  *  G  N  H  *  A  S  F  *  T  H  H  *  I  P  S  Y  *   : E  K  H  I  G  L  G  S  K  S  D  R  V  G  C  I  I  W  S  *  I  C  A  *  C  *  R  W  L  H  H  S  H  R  E  I  K  K  S  W  G  K  *  I  S  D  Q  H  *  L  Q  G  K  *  S  R  Q  S  G  N  H  N  *  Q  P  N  F  *  K  E  E  T  C  L  Q  V  Q  E  Q  D  L  R  L  L  S  R  L  F  L  F  H  R  F  F  F  W  L  I  S  T  S  T  I  I  L  S  F  L  G  V  F  I  Y  I  L  L  G  L  F  F  E  L  F  C  C  W  I  V  F  F  I  I  W  G  I  F  I  I  L  Q  R  G  *  D  V  E  Y  K  L  L  I  H  F  L  L  K  Y  F  V  *  I  *  C  C  L  S  F  S  L  H  F  F  G  D  V  K  L  N  V  S  *  S  Y  T  Y  V  S   : *  K  Q  K  K  K  E   </second_frame>
            <third_frame>   D  P  I  L  C  V  C  G  *  R  A  V  I  S  N  S  S  A  D  C  S  V  H  F  F  L  Y  I  *  T  L  T  S  T  T  I  F  T  I  T  N  Q  F  F  Y  T  L  I  K  I  H  S  L  S  L  F  R  F  W  V  S  E  I  *  S  G  N  Q  E  M  A  E  E  T  K  K  I  A  E  E  T  T  P  E  V  V  V  S  D  V  T  V  R  E  T  P  Q  P  E  P  E  T  L  P  E  S  P  E  K  D  A  A  P  V  T  G  E  S  K  V  E  D  E  K  E  K  E  L  V  G  E  S  N  S  F  K  E  E  S  N  K  V  E  E  L  P  N  P  E  Q  K  A  L  A  E  F  K  Q  M  V  Q  E  A  L  N  K  H  E  F  T  A  P  P  P  P  P  P  A  K  E  E  D  E  K  K  A  A  V  P  A  E  A  P  E  A  E  P  V  T  E  A  A  A  P  A  T  P  D  P  V  I  E  T  E  S  E  P  V  A  E  K  K  V  E  T  E  K  L  E  K  T  E  E  K  V  T  P  P  E  T  E  A  T  P  A  P  A  A  E  T  P  S  E  P  S  E  T  E  K  V  E  A  V  E  E  I  K  E  T  I  V  E  V  P  A  A  V  A  V  M  A  S  T  E  E  P  P  A  A  E  A  E  E  P  K  T  E  Q  T  P  P  A  A  P  E  E  V  S  I  W  G  I  P  L  L  A  D  E  R  S  D  V  I  L  L  K  F  L  R  A  R  D  F  K  V  K  E  A  F  T  M  L  K  S  V  V  A  W  R  K  E  F  K  I  D  E  L  L  D  E  K  E  L  G  Q  G  L  E  K  V  V  Y  N  H  G  V  D  K  E  G  H  P  V  C  Y  N  A  F  G  E  F  Q  D  K  E  L  Y  Q  N  T  F  A  D  D  K  E  K  L  T  K  F  L  R  W  R  I  Q  F  M  E  K  S  I  R  N  L  D  F  S  P  D  G  I  N  T  F  V  Q  V  L  D  L  K  N  S  P  G  L  F  F  Y  K  K  E  L  R  Q  A  T  N  R  A  L  L  L  L  Q  D  N  Y  P  E  F  V  A  K  Q  :  V  F  I  N  V  P  W  W  Y  P  A  Y  Y  R  M  I  N  A  S  F  T  T  R  T  K  S  K  F  V  F  A  G  P  S  R  S  A  D  T  L  F  K :   Y  I  A  P  E  Q  V  P  A  Q  Y  G  G  L  S  K  E  G  E  E  E  F  T  T  A  E  P  A  T  E  E  I  I  K  P  A  S  K  H  T  I  E  F  P  V  T  E  :  K  S  T  L  V  W  E  A  R  V  T  G  W  D  V  S  Y  G  A  E  F  V  P  S  A  E  G  G  Y  T  I  L  I  E  K  S  R  K  V  G  A  N  E  S  V  I  S  T  S  Y  K  A  S  E  A  G  K  V  V  I  T  I  D  N  Q  T  S  K  K  K  K  L  V  Y  R  S  K  N  K  I  S  D  C  *  A  A  F  S  C  F  I  D  F  S  F  G  *  Y  Q  L  V  L  L  F  *  A  F  W  G  Y  L  F  I  F  Y  W  G  Y  F  L  S  Y  F  A  V  G  L  F  F  L  L  Y  G  E  Y  L  L  Y  Y  K  G  V  E  M  W  S  T  S  Y  *  Y  I  F  F  *  N  I  L  C  K  S  N  A  A  S  H  F  P  Y  I  F  L  V  M  *  S  L  T  L  V  N  P  I  L  M  F  P  :  K  N  K  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40936" stop="42174"/>
                    <exon start="42255" stop="42379"/>
                    <exon start="42459" stop="42600"/>
                    <exon start="42804" stop="43055"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1755</number_coding_nucleotides>
                  <number_encoded_amino_acids>585</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGNQEMAEETKKIAEETTPEVVVSDVTVRETPQPEPETLPESPEKDAAPVTGESKVEDEKEKELVGESNSFKEESNKVEELPNPEQKALAEFKQMVQEALNKHEFTAPPPPPPAKEEDEKKAAVPAEAPEAEPVTEAAAPATPDPVIETESEPVAEKKVETEKLEKTEEKVTPPETEATPAPAAETPSEPSETEKVEAVEEIKETIVEVPAAVAVMASTEEPPAAEAEEPKTEQTPPAAPEEVSIWGIPLLADERSDVILLKFLRARDFKVKEAFTMLKSVVAWRKEFKIDELLDEKELGQGLEKVVYNHGVDKEGHPVCYNAFGEFQDKELYQNTFADDKEKLTKFLRWRIQFMEKSIRNLDFSPDGINTFVQVLDLKNSPGLFFYKKELRQATNRALLLLQDNYPEFVAKQVFINVPWWYPAYYRMINASFTTRTKSKFVFAGPSRSADTLFKYIAPEQVPAQYGGLSKEGEEEFTTAEPATEEIIKPASKHTIEFPVTEKSTLVWEARVTGWDVSYGAEFVPSAEGGYTILIEKSRKVGANESVISTSYKASEAGKVVITIDNQTSKKKKLVYRSKNKISDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40742" e_stop="42174"/>
            <exon e_start="42255" e_stop="42379"/>
            <exon e_start="42459" e_stop="42600"/>
            <exon e_start="42804" e_stop="43287"/>
            <exon e_start="44132" e_stop="44147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="0.995"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="40742" e_stop="42174" e_length="1433"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42255" e_stop="42379" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42459" e_stop="42600" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42804" e_stop="43287" e_length="484"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43288" i_stop="44131" i_length="844"/>
          </intron>
          <exon e_serial="5" e_score="0.938">
            <gDNA_exon_boundary e_start="44132" e_stop="44147" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40742" stop="41401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40754" stop="41253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40825" stop="41587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40878" stop="41687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40885" stop="41500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40886" stop="41569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40888" stop="41264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40889" stop="41222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40891" stop="41496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40896" stop="41190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41037" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41175" stop="41953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41175" stop="41717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41381" stop="42131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41386" stop="41566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41441" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41451" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41496" stop="42036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41596" stop="42174"/>
              <exon start="42255" stop="42313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41753" stop="42033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41756" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41756" stop="42174"/>
              <exon start="42255" stop="42351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41757" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41820" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42006" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="42907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42269" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="43217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42355" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="43219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42548" stop="42600"/>
              <exon start="42804" stop="43287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42552" stop="42600"/>
              <exon start="42804" stop="43287"/>
              <exon start="44132" stop="44147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42826" stop="43277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42826" stop="43277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACCCCATTCTTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG : GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA : ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG : AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTA : AAAACAAAAAAAAAAA</gDNA_template>
            <first_frame> W  T  P  F  F  V  C  V  G  N  E  L  S  S  P  T  P  R  Q  T  V  L  F  T  S  S  Y  T  Y  K  P  S  L  L  P  P  F  S  P  L  P  T  N  S  S  I  H  *  *  K  S  I  L  *  A  F  F  V  S  G  Y  L  K  S  D  R  E  T  K  K  W  L  R  K  P  R  K  *  L  K  K  P  P  L  K  W  W  C  L  M  L  Q  *  G  R  H  L  N  L  S  R  K  L  C  R  S  H  R  R  K  M  L  L  R  S  L  E  N  R  R  L  R  M  K  R  R  R  N  L  L  V  N  P  I  R  L  R  K  K  V  T  R  L  K  N  F  L  I  L  N  K  K  H  W  L  N  S  N  R  W  F  K  K  L  L  T  S  M  N  S  L  P  L  L  L  R  R  R  Q  R  K  R  M  R  R  K  Q  P  F  P  P  R  H  R  R  Q  S  Q  L  Q  R  P  Q  R  R  R  H  L  I  Q  *  *  R  Q  N  R  N  R  W  P  R  R  K  L  K  Q  R  N  W  R  K  Q  R  R  K  *  L  H  R  K  L  K  Q  L  R  R  R  Q  Q  R  H  H  L  S  H  R  R  Q  R  R  W  R  Q  S  R  K  S  R  K  P  L  L  K  Y  R  L  R  L  L  *  W  P  P  R  R  S  H  R  L  Q  R  Q  R  N  R  K  Q  S  K  P  H  Q  Q  H  Q  K  K  Y  P  Y  G  E  Y  P  F  *  Q  M  R  E  V  M  *  S  F  S  S  F  C  E  R  E  I  S  R  *  K  K  L  S  P  C  *  K  V  L  S  H  G  E  K  N  S  R  L  M  N  S  W  M  R  K  N  *  D  K  D  L  K  K  L  F  T  I  T  E  *  T  K  K  V  T  L  Y  V  T  M  H  L  V  S  S  K  T  K  N  C  T  K  T  L  L  L  M  T  K  R  N  S  P  N  S  S  D  G  E  F  N  S  W  R  N  P  S  G  I  L  I  L  A  L  M  V  S  T  L  L  F  K  F  L  I  *  R  I  H  L  D  S  S  F  T  R  K  N  F  A  K  P  P  I  V  P  F  Y  Y  S  R  I  I  T  L  N  L  L  P  S  R :   C  S  S  M  F  H  G  G  T  Q  L  T  T  G  *  L  M  H  L  S  L  Q  G  P  R  A  S  L  F  L  L  V  L  Q  D  L  L  I  L  Y  S   : N  T  *  H  L  N  K  Y  Q  H  N  M  V  D  L  A  R  R  V  K  R  N  S  P  L  L  N  Q  P  L  R  K  S  L  S  Q  L  L  N  T  P  L  N  S  Q  L  L  R :   K  A  H  W  F  G  K  Q  E  *  Q  G  G  M  Y  H  M  E  L  N  L  C  L  V  L  K  V  A  T  P  F  S  *  R  N  Q  E  K  L  G  Q  M  N  Q  *  S  A  L  A  T  R  Q  V  K  Q  A  K  W  *  S  Q  L  T  T  K  L  L  K  R  R  N  L  F  T  G  P  R  T  R  S  Q  I  A  E  P  P  F  L  V  S  *  I  F  L  L  V  D  I  N  *  Y  Y  Y  F  E  L  F  G  G  I  Y  L  Y  F  I  G  V  I  F  *  A  I  L  L  L  D  C  F  F  Y  Y  M  G  N  I  Y  Y  I  T  K  G  L  R  C  G  V  Q  V  I  D  T  F  S  S  E  I  F  C  V  N  L  :  K  T  K  K  K  </first_frame>
            <second_frame>  G  P  H  S  L  C  V  W  V  T  S  C  H  L  Q  L  L  G  R  L  F  C  S  L  L  L  I  H  I  N  P  H  F  Y  H  H  F  H  H  Y  Q  P  I  L  L  Y  I  N  K  N  P  F  F  K  P  F  S  F  L  G  I  *  N  L  I  G  K  P  R  N  G  *  G  N  Q  E  N  S  *  R  N  H  P  *  S  G  G  V  *  C  Y  S  E  G  D  T  S  T  *  A  G  N  F  A  G  V  T  G  E  R  C  C  S  G  H  W  R  I  E  G  *  G  *  K  G  E  G  T  C  W  *  I  Q  F  V  *  G  R  K  *  Q  G  *  R  T  S  *  S  *  T  K  S  I  G  *  I  Q  T  D  G  S  R  S  S  *  Q  A  *  I  H  C  P  S  S  S  A  A  G  K  G  R  G  *  E  E  S  S  R  S  R  R  G  T  G  G  R  A  S  Y  R  G  R  S  A  G  D  T  *  S  S  D  R  D  R  I  G  T  G  G  R  E  E  S  *  N  R  E  I  G  E  N  R  G  E  S  N  S  T  G  N  *  S  N  S  G  A  G  S  R  D  T  I  *  A  I  G  D  R  E  G  G  G  S  R  G  N  Q  G  N  H  C  *  S  T  G  C  G  C  C  D  G  L  H  G  G  A  T  G  C  R  G  R  G  T  E  N  R  A  N  P  T  S  S  T  R  R  S  I  H  M  G  N  T  P  F  S  R  *  E  K  *  C  N  P  S  Q  V  S  A  S  E  R  F  Q  G  E  R  S  F  H  H  V  E  K  C  C  R  M  E  K  R  I  Q  D  *  *  T  L  G  *  E  R  I  R  T  R  T  *  K  S  C  L  Q  S  R  S  R  Q  R  R  S  P  C  M  L  Q  C  I  W  *  V  P  R  Q  R  I  V  P  K  H  F  C  *  *  Q  R  E  T  H  Q  I  P  Q  M  E  N  S  I  H  G  E  I  H  Q  E  S  *  F  *  P  *  W  Y  Q  H  F  C  S  S  S  *  S  E  E  F  T  W  T  L  L  L  Q  E  R  T  S  P  S  H  Q  S  C  P  S  I  T  P  G  *  L  P  *  I  C  C  Q  A   : G  V  H  Q  C  S  M  V  V  P  S  L  L  Q  D  D  *  C  I  F  H  Y  K  D  Q  E  Q  V  C  F  C  W  S  F  K  I  C  *  Y  S  I  Q  :  I  H  S  T  *  T  S  T  S  T  I  W  W  T  *  Q  G  G  *  R  G  I  H  H  C  *  T  S  H  *  G  N  H  *  A  S  F  *  T  H  H  *  I  P  S  Y  *   : E  K  H  I  G  L  G  S  K  S  D  R  V  G  C  I  I  W  S  *  I  C  A  *  C  *  R  W  L  H  H  S  H  R  E  I  K  K  S  W  G  K  *  I  S  D  Q  H  *  L  Q  G  K  *  S  R  Q  S  G  N  H  N  *  Q  P  N  F  *  K  E  E  T  C  L  Q  V  Q  E  Q  D  L  R  L  L  S  R  L  F  L  F  H  R  F  F  F  W  L  I  S  T  S  T  I  I  L  S  F  L  G  V  F  I  Y  I  L  L  G  L  F  F  E  L  F  C  C  W  I  V  F  F  I  I  W  G  I  F  I  I  L  Q  R  G  *  D  V  E  Y  K  L  L  I  H  F  L  L  K  Y  F  V  *  I  * :   K  Q  K  K  K </second_frame>
            <third_frame>   D  P  I  L  C  V  C  G  *  R  A  V  I  S  N  S  S  A  D  C  S  V  H  F  F  L  Y  I  *  T  L  T  S  T  T  I  F  T  I  T  N  Q  F  F  Y  T  L  I  K  I  H  S  L  S  L  F  R  F  W  V  S  E  I  *  S  G  N  Q  E  M  A  E  E  T  K  K  I  A  E  E  T  T  P  E  V  V  V  S  D  V  T  V  R  E  T  P  Q  P  E  P  E  T  L  P  E  S  P  E  K  D  A  A  P  V  T  G  E  S  K  V  E  D  E  K  E  K  E  L  V  G  E  S  N  S  F  K  E  E  S  N  K  V  E  E  L  P  N  P  E  Q  K  A  L  A  E  F  K  Q  M  V  Q  E  A  L  N  K  H  E  F  T  A  P  P  P  P  P  P  A  K  E  E  D  E  K  K  A  A  V  P  A  E  A  P  E  A  E  P  V  T  E  A  A  A  P  A  T  P  D  P  V  I  E  T  E  S  E  P  V  A  E  K  K  V  E  T  E  K  L  E  K  T  E  E  K  V  T  P  P  E  T  E  A  T  P  A  P  A  A  E  T  P  S  E  P  S  E  T  E  K  V  E  A  V  E  E  I  K  E  T  I  V  E  V  P  A  A  V  A  V  M  A  S  T  E  E  P  P  A  A  E  A  E  E  P  K  T  E  Q  T  P  P  A  A  P  E  E  V  S  I  W  G  I  P  L  L  A  D  E  R  S  D  V  I  L  L  K  F  L  R  A  R  D  F  K  V  K  E  A  F  T  M  L  K  S  V  V  A  W  R  K  E  F  K  I  D  E  L  L  D  E  K  E  L  G  Q  G  L  E  K  V  V  Y  N  H  G  V  D  K  E  G  H  P  V  C  Y  N  A  F  G  E  F  Q  D  K  E  L  Y  Q  N  T  F  A  D  D  K  E  K  L  T  K  F  L  R  W  R  I  Q  F  M  E  K  S  I  R  N  L  D  F  S  P  D  G  I  N  T  F  V  Q  V  L  D  L  K  N  S  P  G  L  F  F  Y  K  K  E  L  R  Q  A  T  N  R  A  L  L  L  L  Q  D  N  Y  P  E  F  V  A  K  Q  :  V  F  I  N  V  P  W  W  Y  P  A  Y  Y  R  M  I  N  A  S  F  T  T  R  T  K  S  K  F  V  F  A  G  P  S  R  S  A  D  T  L  F  K :   Y  I  A  P  E  Q  V  P  A  Q  Y  G  G  L  S  K  E  G  E  E  E  F  T  T  A  E  P  A  T  E  E  I  I  K  P  A  S  K  H  T  I  E  F  P  V  T  E  :  K  S  T  L  V  W  E  A  R  V  T  G  W  D  V  S  Y  G  A  E  F  V  P  S  A  E  G  G  Y  T  I  L  I  E  K  S  R  K  V  G  A  N  E  S  V  I  S  T  S  Y  K  A  S  E  A  G  K  V  V  I  T  I  D  N  Q  T  S  K  K  K  K  L  V  Y  R  S  K  N  K  I  S  D  C  *  A  A  F  S  C  F  I  D  F  S  F  G  *  Y  Q  L  V  L  L  F  *  A  F  W  G  Y  L  F  I  F  Y  W  G  Y  F  L  S  Y  F  A  V  G  L  F  F  L  L  Y  G  E  Y  L  L  Y  Y  K  G  V  E  M  W  S  T  S  Y  *  Y  I  F  F  *  N  I  L  C  K  S   : K  N  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40936" stop="42174"/>
                    <exon start="42255" stop="42379"/>
                    <exon start="42459" stop="42600"/>
                    <exon start="42804" stop="43055"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1755</number_coding_nucleotides>
                  <number_encoded_amino_acids>585</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGNQEMAEETKKIAEETTPEVVVSDVTVRETPQPEPETLPESPEKDAAPVTGESKVEDEKEKELVGESNSFKEESNKVEELPNPEQKALAEFKQMVQEALNKHEFTAPPPPPPAKEEDEKKAAVPAEAPEAEPVTEAAAPATPDPVIETESEPVAEKKVETEKLEKTEEKVTPPETEATPAPAAETPSEPSETEKVEAVEEIKETIVEVPAAVAVMASTEEPPAAEAEEPKTEQTPPAAPEEVSIWGIPLLADERSDVILLKFLRARDFKVKEAFTMLKSVVAWRKEFKIDELLDEKELGQGLEKVVYNHGVDKEGHPVCYNAFGEFQDKELYQNTFADDKEKLTKFLRWRIQFMEKSIRNLDFSPDGINTFVQVLDLKNSPGLFFYKKELRQATNRALLLLQDNYPEFVAKQVFINVPWWYPAYYRMINASFTTRTKSKFVFAGPSRSADTLFKYIAPEQVPAQYGGLSKEGEEEFTTAEPATEEIIKPASKHTIEFPVTEKSTLVWEARVTGWDVSYGAEFVPSAEGGYTILIEKSRKVGANESVISTSYKASEAGKVVITIDNQTSKKKKLVYRSKNKISDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40742" e_stop="42174"/>
            <exon e_start="42255" e_stop="42379"/>
            <exon e_start="42459" e_stop="42600"/>
            <exon e_start="42804" e_stop="43254"/>
            <exon e_start="44137" e_stop="44161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="0.995"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.840"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="40742" e_stop="42174" e_length="1433"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42255" e_stop="42379" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42459" e_stop="42600" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42804" e_stop="43254" e_length="451"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43255" i_stop="44136" i_length="882"/>
          </intron>
          <exon e_serial="5" e_score="0.840">
            <gDNA_exon_boundary e_start="44137" e_stop="44161" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40742" stop="41401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40754" stop="41253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40825" stop="41587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40878" stop="41687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40885" stop="41500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40886" stop="41569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40888" stop="41264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40889" stop="41222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40891" stop="41496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40896" stop="41190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41037" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41175" stop="41953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41175" stop="41717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41381" stop="42131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41386" stop="41566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41441" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41451" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41496" stop="42036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41596" stop="42174"/>
              <exon start="42255" stop="42313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41753" stop="42033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41756" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41756" stop="42174"/>
              <exon start="42255" stop="42351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41757" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41820" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42006" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="42907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42269" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="43217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42355" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="43219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42555" stop="42600"/>
              <exon start="42804" stop="43254"/>
              <exon start="44137" stop="44161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268590" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACCCCATTCTTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG : GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA : ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG : AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGAT : AAAAAAAAAAAGAAGAGAAACTAGA</gDNA_template>
            <first_frame> W  T  P  F  F  V  C  V  G  N  E  L  S  S  P  T  P  R  Q  T  V  L  F  T  S  S  Y  T  Y  K  P  S  L  L  P  P  F  S  P  L  P  T  N  S  S  I  H  *  *  K  S  I  L  *  A  F  F  V  S  G  Y  L  K  S  D  R  E  T  K  K  W  L  R  K  P  R  K  *  L  K  K  P  P  L  K  W  W  C  L  M  L  Q  *  G  R  H  L  N  L  S  R  K  L  C  R  S  H  R  R  K  M  L  L  R  S  L  E  N  R  R  L  R  M  K  R  R  R  N  L  L  V  N  P  I  R  L  R  K  K  V  T  R  L  K  N  F  L  I  L  N  K  K  H  W  L  N  S  N  R  W  F  K  K  L  L  T  S  M  N  S  L  P  L  L  L  R  R  R  Q  R  K  R  M  R  R  K  Q  P  F  P  P  R  H  R  R  Q  S  Q  L  Q  R  P  Q  R  R  R  H  L  I  Q  *  *  R  Q  N  R  N  R  W  P  R  R  K  L  K  Q  R  N  W  R  K  Q  R  R  K  *  L  H  R  K  L  K  Q  L  R  R  R  Q  Q  R  H  H  L  S  H  R  R  Q  R  R  W  R  Q  S  R  K  S  R  K  P  L  L  K  Y  R  L  R  L  L  *  W  P  P  R  R  S  H  R  L  Q  R  Q  R  N  R  K  Q  S  K  P  H  Q  Q  H  Q  K  K  Y  P  Y  G  E  Y  P  F  *  Q  M  R  E  V  M  *  S  F  S  S  F  C  E  R  E  I  S  R  *  K  K  L  S  P  C  *  K  V  L  S  H  G  E  K  N  S  R  L  M  N  S  W  M  R  K  N  *  D  K  D  L  K  K  L  F  T  I  T  E  *  T  K  K  V  T  L  Y  V  T  M  H  L  V  S  S  K  T  K  N  C  T  K  T  L  L  L  M  T  K  R  N  S  P  N  S  S  D  G  E  F  N  S  W  R  N  P  S  G  I  L  I  L  A  L  M  V  S  T  L  L  F  K  F  L  I  *  R  I  H  L  D  S  S  F  T  R  K  N  F  A  K  P  P  I  V  P  F  Y  Y  S  R  I  I  T  L  N  L  L  P  S  R :   C  S  S  M  F  H  G  G  T  Q  L  T  T  G  *  L  M  H  L  S  L  Q  G  P  R  A  S  L  F  L  L  V  L  Q  D  L  L  I  L  Y  S   : N  T  *  H  L  N  K  Y  Q  H  N  M  V  D  L  A  R  R  V  K  R  N  S  P  L  L  N  Q  P  L  R  K  S  L  S  Q  L  L  N  T  P  L  N  S  Q  L  L  R :   K  A  H  W  F  G  K  Q  E  *  Q  G  G  M  Y  H  M  E  L  N  L  C  L  V  L  K  V  A  T  P  F  S  *  R  N  Q  E  K  L  G  Q  M  N  Q  *  S  A  L  A  T  R  Q  V  K  Q  A  K  W  *  S  Q  L  T  T  K  L  L  K  R  R  N  L  F  T  G  P  R  T  R  S  Q  I  A  E  P  P  F  L  V  S  *  I  F  L  L  V  D  I  N  *  Y  Y  Y  F  E  L  F  G  G  I  Y  L  Y  F  I  G  V  I  F  *  A  I  L  L  L  D  C  F  F  Y  Y  M  G  N  I  Y  Y  I  T  K  G  L  R  C  G  V  Q  V  I  D  :  K  K  K  K  K  R  N  *  </first_frame>
            <second_frame>  G  P  H  S  L  C  V  W  V  T  S  C  H  L  Q  L  L  G  R  L  F  C  S  L  L  L  I  H  I  N  P  H  F  Y  H  H  F  H  H  Y  Q  P  I  L  L  Y  I  N  K  N  P  F  F  K  P  F  S  F  L  G  I  *  N  L  I  G  K  P  R  N  G  *  G  N  Q  E  N  S  *  R  N  H  P  *  S  G  G  V  *  C  Y  S  E  G  D  T  S  T  *  A  G  N  F  A  G  V  T  G  E  R  C  C  S  G  H  W  R  I  E  G  *  G  *  K  G  E  G  T  C  W  *  I  Q  F  V  *  G  R  K  *  Q  G  *  R  T  S  *  S  *  T  K  S  I  G  *  I  Q  T  D  G  S  R  S  S  *  Q  A  *  I  H  C  P  S  S  S  A  A  G  K  G  R  G  *  E  E  S  S  R  S  R  R  G  T  G  G  R  A  S  Y  R  G  R  S  A  G  D  T  *  S  S  D  R  D  R  I  G  T  G  G  R  E  E  S  *  N  R  E  I  G  E  N  R  G  E  S  N  S  T  G  N  *  S  N  S  G  A  G  S  R  D  T  I  *  A  I  G  D  R  E  G  G  G  S  R  G  N  Q  G  N  H  C  *  S  T  G  C  G  C  C  D  G  L  H  G  G  A  T  G  C  R  G  R  G  T  E  N  R  A  N  P  T  S  S  T  R  R  S  I  H  M  G  N  T  P  F  S  R  *  E  K  *  C  N  P  S  Q  V  S  A  S  E  R  F  Q  G  E  R  S  F  H  H  V  E  K  C  C  R  M  E  K  R  I  Q  D  *  *  T  L  G  *  E  R  I  R  T  R  T  *  K  S  C  L  Q  S  R  S  R  Q  R  R  S  P  C  M  L  Q  C  I  W  *  V  P  R  Q  R  I  V  P  K  H  F  C  *  *  Q  R  E  T  H  Q  I  P  Q  M  E  N  S  I  H  G  E  I  H  Q  E  S  *  F  *  P  *  W  Y  Q  H  F  C  S  S  S  *  S  E  E  F  T  W  T  L  L  L  Q  E  R  T  S  P  S  H  Q  S  C  P  S  I  T  P  G  *  L  P  *  I  C  C  Q  A   : G  V  H  Q  C  S  M  V  V  P  S  L  L  Q  D  D  *  C  I  F  H  Y  K  D  Q  E  Q  V  C  F  C  W  S  F  K  I  C  *  Y  S  I  Q  :  I  H  S  T  *  T  S  T  S  T  I  W  W  T  *  Q  G  G  *  R  G  I  H  H  C  *  T  S  H  *  G  N  H  *  A  S  F  *  T  H  H  *  I  P  S  Y  *   : E  K  H  I  G  L  G  S  K  S  D  R  V  G  C  I  I  W  S  *  I  C  A  *  C  *  R  W  L  H  H  S  H  R  E  I  K  K  S  W  G  K  *  I  S  D  Q  H  *  L  Q  G  K  *  S  R  Q  S  G  N  H  N  *  Q  P  N  F  *  K  E  E  T  C  L  Q  V  Q  E  Q  D  L  R  L  L  S  R  L  F  L  F  H  R  F  F  F  W  L  I  S  T  S  T  I  I  L  S  F  L  G  V  F  I  Y  I  L  L  G  L  F  F  E  L  F  C  C  W  I  V  F  F  I  I  W  G  I  F  I  I  L  Q  R  G  *  D  V  E  Y  K  L  L  I :   K  K  K  R  R  E  T  R </second_frame>
            <third_frame>   D  P  I  L  C  V  C  G  *  R  A  V  I  S  N  S  S  A  D  C  S  V  H  F  F  L  Y  I  *  T  L  T  S  T  T  I  F  T  I  T  N  Q  F  F  Y  T  L  I  K  I  H  S  L  S  L  F  R  F  W  V  S  E  I  *  S  G  N  Q  E  M  A  E  E  T  K  K  I  A  E  E  T  T  P  E  V  V  V  S  D  V  T  V  R  E  T  P  Q  P  E  P  E  T  L  P  E  S  P  E  K  D  A  A  P  V  T  G  E  S  K  V  E  D  E  K  E  K  E  L  V  G  E  S  N  S  F  K  E  E  S  N  K  V  E  E  L  P  N  P  E  Q  K  A  L  A  E  F  K  Q  M  V  Q  E  A  L  N  K  H  E  F  T  A  P  P  P  P  P  P  A  K  E  E  D  E  K  K  A  A  V  P  A  E  A  P  E  A  E  P  V  T  E  A  A  A  P  A  T  P  D  P  V  I  E  T  E  S  E  P  V  A  E  K  K  V  E  T  E  K  L  E  K  T  E  E  K  V  T  P  P  E  T  E  A  T  P  A  P  A  A  E  T  P  S  E  P  S  E  T  E  K  V  E  A  V  E  E  I  K  E  T  I  V  E  V  P  A  A  V  A  V  M  A  S  T  E  E  P  P  A  A  E  A  E  E  P  K  T  E  Q  T  P  P  A  A  P  E  E  V  S  I  W  G  I  P  L  L  A  D  E  R  S  D  V  I  L  L  K  F  L  R  A  R  D  F  K  V  K  E  A  F  T  M  L  K  S  V  V  A  W  R  K  E  F  K  I  D  E  L  L  D  E  K  E  L  G  Q  G  L  E  K  V  V  Y  N  H  G  V  D  K  E  G  H  P  V  C  Y  N  A  F  G  E  F  Q  D  K  E  L  Y  Q  N  T  F  A  D  D  K  E  K  L  T  K  F  L  R  W  R  I  Q  F  M  E  K  S  I  R  N  L  D  F  S  P  D  G  I  N  T  F  V  Q  V  L  D  L  K  N  S  P  G  L  F  F  Y  K  K  E  L  R  Q  A  T  N  R  A  L  L  L  L  Q  D  N  Y  P  E  F  V  A  K  Q  :  V  F  I  N  V  P  W  W  Y  P  A  Y  Y  R  M  I  N  A  S  F  T  T  R  T  K  S  K  F  V  F  A  G  P  S  R  S  A  D  T  L  F  K :   Y  I  A  P  E  Q  V  P  A  Q  Y  G  G  L  S  K  E  G  E  E  E  F  T  T  A  E  P  A  T  E  E  I  I  K  P  A  S  K  H  T  I  E  F  P  V  T  E  :  K  S  T  L  V  W  E  A  R  V  T  G  W  D  V  S  Y  G  A  E  F  V  P  S  A  E  G  G  Y  T  I  L  I  E  K  S  R  K  V  G  A  N  E  S  V  I  S  T  S  Y  K  A  S  E  A  G  K  V  V  I  T  I  D  N  Q  T  S  K  K  K  K  L  V  Y  R  S  K  N  K  I  S  D  C  *  A  A  F  S  C  F  I  D  F  S  F  G  *  Y  Q  L  V  L  L  F  *  A  F  W  G  Y  L  F  I  F  Y  W  G  Y  F  L  S  Y  F  A  V  G  L  F  F  L  L  Y  G  E  Y  L  L  Y  Y  K  G  V  E  M  W  S  T  S  Y  *   : *  K  K  K  E  E  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40936" stop="42174"/>
                    <exon start="42255" stop="42379"/>
                    <exon start="42459" stop="42600"/>
                    <exon start="42804" stop="43055"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1755</number_coding_nucleotides>
                  <number_encoded_amino_acids>585</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGNQEMAEETKKIAEETTPEVVVSDVTVRETPQPEPETLPESPEKDAAPVTGESKVEDEKEKELVGESNSFKEESNKVEELPNPEQKALAEFKQMVQEALNKHEFTAPPPPPPAKEEDEKKAAVPAEAPEAEPVTEAAAPATPDPVIETESEPVAEKKVETEKLEKTEEKVTPPETEATPAPAAETPSEPSETEKVEAVEEIKETIVEVPAAVAVMASTEEPPAAEAEEPKTEQTPPAAPEEVSIWGIPLLADERSDVILLKFLRARDFKVKEAFTMLKSVVAWRKEFKIDELLDEKELGQGLEKVVYNHGVDKEGHPVCYNAFGEFQDKELYQNTFADDKEKLTKFLRWRIQFMEKSIRNLDFSPDGINTFVQVLDLKNSPGLFFYKKELRQATNRALLLLQDNYPEFVAKQVFINVPWWYPAYYRMINASFTTRTKSKFVFAGPSRSADTLFKYIAPEQVPAQYGGLSKEGEEEFTTAEPATEEIIKPASKHTIEFPVTEKSTLVWEARVTGWDVSYGAEFVPSAEGGYTILIEKSRKVGANESVISTSYKASEAGKVVITIDNQTSKKKKLVYRSKNKISDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="40742" e_stop="41536"/>
            <exon e_start="42906" e_stop="43202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40742" e_stop="41536" e_length="795"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41537" i_stop="42905" i_length="1369"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="42906" e_stop="43202" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40742" stop="41401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40754" stop="41253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40868" stop="41536"/>
              <exon start="42906" stop="43202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40873" stop="41314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40885" stop="41500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40888" stop="41264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40889" stop="41222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40891" stop="41496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40896" stop="41190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41037" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACCCCATTCTTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGG : AAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGG</gDNA_template>
            <first_frame> W  T  P  F  F  V  C  V  G  N  E  L  S  S  P  T  P  R  Q  T  V  L  F  T  S  S  Y  T  Y  K  P  S  L  L  P  P  F  S  P  L  P  T  N  S  S  I  H  *  *  K  S  I  L  *  A  F  F  V  S  G  Y  L  K  S  D  R  E  T  K  K  W  L  R  K  P  R  K  *  L  K  K  P  P  L  K  W  W  C  L  M  L  Q  *  G  R  H  L  N  L  S  R  K  L  C  R  S  H  R  R  K  M  L  L  R  S  L  E  N  R  R  L  R  M  K  R  R  R  N  L  L  V  N  P  I  R  L  R  K  K  V  T  R  L  K  N  F  L  I  L  N  K  K  H  W  L  N  S  N  R  W  F  K  K  L  L  T  S  M  N  S  L  P  L  L  L  R  R  R  Q  R  K  R  M  R  R  K  Q  P  F  P  P  R  H  R  R  Q  S  Q  L  Q  R  P  Q  R  R  R  H  L  I  Q  *  *  R  Q  N  R  N  R  W  P  R  R  K  L  K  Q  R  N  W  R  K  Q  R  R  K  *  L  H  R  K  L  K  Q  L  R  R  R  Q  Q  R  H  H  L  S  H  R  R  Q  R  R  W  R  Q  S  R  :  K  S  R  K  V  G  A  N  E  S  V  I  S  T  S  Y  K  A  S  E  A  G  K  V  V  I  T  I  D  N  Q  T  S  K  K  K  K  L  V  Y  R  S  K  N  K  I  S  D  C  *  A  A  F  S  C  F  I  D  F  S  F  G  *  Y  Q  L  V  L  L  F  *  A  F  W  G  Y  L  F  I  F  Y  W  G  Y  F  L  S  Y  F  A  V  G  L  F  F  L  L  Y  G </first_frame>
            <second_frame>  G  P  H  S  L  C  V  W  V  T  S  C  H  L  Q  L  L  G  R  L  F  C  S  L  L  L  I  H  I  N  P  H  F  Y  H  H  F  H  H  Y  Q  P  I  L  L  Y  I  N  K  N  P  F  F  K  P  F  S  F  L  G  I  *  N  L  I  G  K  P  R  N  G  *  G  N  Q  E  N  S  *  R  N  H  P  *  S  G  G  V  *  C  Y  S  E  G  D  T  S  T  *  A  G  N  F  A  G  V  T  G  E  R  C  C  S  G  H  W  R  I  E  G  *  G  *  K  G  E  G  T  C  W  *  I  Q  F  V  *  G  R  K  *  Q  G  *  R  T  S  *  S  *  T  K  S  I  G  *  I  Q  T  D  G  S  R  S  S  *  Q  A  *  I  H  C  P  S  S  S  A  A  G  K  G  R  G  *  E  E  S  S  R  S  R  R  G  T  G  G  R  A  S  Y  R  G  R  S  A  G  D  T  *  S  S  D  R  D  R  I  G  T  G  G  R  E  E  S  *  N  R  E  I  G  E  N  R  G  E  S  N  S  T  G  N  *  S  N  S  G  A  G  S  R  D  T  I  *  A  I  G  D  R  E  G  G  G  S  R  G :   N  Q  E  K  L  G  Q  M  N  Q  *  S  A  L  A  T  R  Q  V  K  Q  A  K  W  *  S  Q  L  T  T  K  L  L  K  R  R  N  L  F  T  G  P  R  T  R  S  Q  I  A  E  P  P  F  L  V  S  *  I  F  L  L  V  D  I  N  *  Y  Y  Y  F  E  L  F  G  G  I  Y  L  Y  F  I  G  V  I  F  *  A  I  L  L  L  D  C  F  F  Y  Y  M   </second_frame>
            <third_frame>   D  P  I  L  C  V  C  G  *  R  A  V  I  S  N  S  S  A  D  C  S  V  H  F  F  L  Y  I  *  T  L  T  S  T  T  I  F  T  I  T  N  Q  F  F  Y  T  L  I  K  I  H  S  L  S  L  F  R  F  W  V  S  E  I  *  S  G  N  Q  E  M  A  E  E  T  K  K  I  A  E  E  T  T  P  E  V  V  V  S  D  V  T  V  R  E  T  P  Q  P  E  P  E  T  L  P  E  S  P  E  K  D  A  A  P  V  T  G  E  S  K  V  E  D  E  K  E  K  E  L  V  G  E  S  N  S  F  K  E  E  S  N  K  V  E  E  L  P  N  P  E  Q  K  A  L  A  E  F  K  Q  M  V  Q  E  A  L  N  K  H  E  F  T  A  P  P  P  P  P  P  A  K  E  E  D  E  K  K  A  A  V  P  A  E  A  P  E  A  E  P  V  T  E  A  A  A  P  A  T  P  D  P  V  I  E  T  E  S  E  P  V  A  E  K  K  V  E  T  E  K  L  E  K  T  E  E  K  V  T  P  P  E  T  E  A  T  P  A  P  A  A  E  T  P  S  E  P  S  E  T  E  K  V  E  A  V  E   : E  I  K  K  S  W  G  K  *  I  S  D  Q  H  *  L  Q  G  K  *  S  R  Q  S  G  N  H  N  *  Q  P  N  F  *  K  E  E  T  C  L  Q  V  Q  E  Q  D  L  R  L  L  S  R  L  F  L  F  H  R  F  F  F  W  L  I  S  T  S  T  I  I  L  S  F  L  G  V  F  I  Y  I  L  L  G  L  F  F  E  L  F  C  C  W  I  V  F  F  I  I  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40936" stop="41536"/>
                    <exon start="42906" stop="42931"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGNQEMAEETKKIAEETTPEVVVSDVTVRETPQPEPETLPESPEKDAAPVTGESKVEDEKEKELVGESNSFKEESNKVEELPNPEQKALAEFKQMVQEALNKHEFTAPPPPPPAKEEDEKKAAVPAEAPEAEPVTEAAAPATPDPVIETESEPVAEKKVETEKLEKTEEKVTPPETEATPAPAAETPSEPSETEKVEAVEEIKKSWGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43007" stop="43201"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEETCLQVQEQDLRLLSRLFLFHRFFFWLISTSTIILSFLGVFIYILLGLFFELFCCWIVFFIIW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="55070" PGL_stop="62873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55070" e_stop="55384"/>
            <exon e_start="57163" e_stop="57287"/>
            <exon e_start="58100" e_stop="58541"/>
            <exon e_start="61329" e_stop="61441"/>
            <exon e_start="62822" e_stop="62873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="0.921"/>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="0.968"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.984"/>
          <exon-intron don_prob="0.946" acc_prob="0.992" e_score="0.965"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="55070" e_stop="55384" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="55385" i_stop="57162" i_length="1778"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="57163" e_stop="57287" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="57288" i_stop="58099" i_length="812"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="58100" e_stop="58541" e_length="442"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58542" i_stop="61328" i_length="2787"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="61329" e_stop="61441" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.946" acc_prob="0.992">
            <gDNA_intron_boundary i_start="61442" i_stop="62821" i_length="1380"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="62822" e_stop="62873" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55070" stop="55384"/>
              <exon start="57163" stop="57287"/>
              <exon start="58100" stop="58263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55070" stop="55384"/>
              <exon start="57163" stop="57287"/>
              <exon start="58100" stop="58122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58109" stop="58541"/>
              <exon start="61329" stop="61441"/>
              <exon start="62822" stop="62873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58109" stop="58541"/>
              <exon start="61329" stop="61437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAAAATATCAAAATCTTCAAAAGAAGGCCAATTCCGTTCTCCTCTCTTTATCGTGAACACTTTCGCCGGTTGATTTCATCGATCGTCGTTCAATCATCACCTGCAAATGGAAATGGGAATAGAATCGGCTACTCCGAAGTCCGATCACGTCGCCGGAATGGCTTTGAACATTCCGGTGAATGATTCGAATTATGCGACGGCGTTGTTCCTCCCTAGACGCCTTCGCCGACGCCTTCTTGAAACCAAAACTCCTTCCATTATTACCGCCCAAGATATTGAAACCAAGCTTAAGGACGCCGAATTACGTCGTCAG : CAATTTTATGAGTTATTGTCAAGCAAGGCACGGCCGAAATTGAGATTGTCGACATGCTCATTTTCGCAGGATGGGGAGCTTAGAAAGCAACTAGAAGCCAAGCTTCTTGCTGCTGAAAAGAAGAG : GTTGAGCATCCTTGCGAAAGTTCAGAAGCGCTTGGCAAGATTAGATGAGCTTAGACAAGCAGCTAAAAATGCTGTGGAAATGCGTTTTGAGAAAGAACGTGATGAGCTTGGCAATAAGGTTGAGTCACGAGCTCAGCGGGCAGAATTGAACCGGAGGGTTCTTCTTAAATGTAGGCAATGGAAGGCTGCAAAAAGGGAACGAATTTCACAGTTGCTAACAAGGAGGGTAATGCAAGAGAGCAAATACAGGGAGTGTGTTGGGGCTGCTATTCATCGGAAGCGGGCTGCTGCTGAAAAGAAGAGACTGGGATTTCTGGAAGCAGAGAGATCAAAGGCACGTGCAAGAATAGTACAAGTTAAGCAGATAGCAAACTCTGTATATCGTCAACGGGAGATTGAGAGGATAAGACTAAAAGATCAACTGGAGAATCGTCTCCAAAAG : GCAAAGAGGCTCAGAGCAGAGTATTTAAAGCAGAGGCGAAGTCTGCTATGTTCACGTCGTTCTTGTTCAGACATAATTGCGTGGGGGGAGTTTTTGTCTTTTAACGTAGCAAG : GTGCTGGAGGCGGTTCATCCAACTAAGACGAACAACTTTTTCATTGGCTAAA</gDNA_template>
            <first_frame> R  K  I  S  K  S  S  K  E  G  Q  F  R  S  P  L  F  I  V  N  T  F  A  G  *  F  H  R  S  S  F  N  H  H  L  Q  M  E  M  G  I  E  S  A  T  P  K  S  D  H  V  A  G  M  A  L  N  I  P  V  N  D  S  N  Y  A  T  A  L  F  L  P  R  R  L  R  R  R  L  L  E  T  K  T  P  S  I  I  T  A  Q  D  I  E  T  K  L  K  D  A  E  L  R  R  Q  :  Q  F  Y  E  L  L  S  S  K  A  R  P  K  L  R  L  S  T  C  S  F  S  Q  D  G  E  L  R  K  Q  L  E  A  K  L  L  A  A  E  K  K  R :   L  S  I  L  A  K  V  Q  K  R  L  A  R  L  D  E  L  R  Q  A  A  K  N  A  V  E  M  R  F  E  K  E  R  D  E  L  G  N  K  V  E  S  R  A  Q  R  A  E  L  N  R  R  V  L  L  K  C  R  Q  W  K  A  A  K  R  E  R  I  S  Q  L  L  T  R  R  V  M  Q  E  S  K  Y  R  E  C  V  G  A  A  I  H  R  K  R  A  A  A  E  K  K  R  L  G  F  L  E  A  E  R  S  K  A  R  A  R  I  V  Q  V  K  Q  I  A  N  S  V  Y  R  Q  R  E  I  E  R  I  R  L  K  D  Q  L  E  N  R  L  Q  K  :  A  K  R  L  R  A  E  Y  L  K  Q  R  R  S  L  L  C  S  R  R  S  C  S  D  I  I  A  W  G  E  F  L  S  F  N  V  A  R :   C  W  R  R  F  I  Q  L  R  R  T  T  F  S  L  A  K </first_frame>
            <second_frame>  E  K  Y  Q  N  L  Q  K  K  A  N  S  V  L  L  S  L  S  *  T  L  S  P  V  D  F  I  D  R  R  S  I  I  T  C  K  W  K  W  E  *  N  R  L  L  R  S  P  I  T  S  P  E  W  L  *  T  F  R  *  M  I  R  I  M  R  R  R  C  S  S  L  D  A  F  A  D  A  F  L  K  P  K  L  L  P  L  L  P  P  K  I  L  K  P  S  L  R  T  P  N  Y  V  V  S :   N  F  M  S  Y  C  Q  A  R  H  G  R  N  *  D  C  R  H  A  H  F  R  R  M  G  S  L  E  S  N  *  K  P  S  F  L  L  L  K  R  R   : G  *  A  S  L  R  K  F  R  S  A  W  Q  D  *  M  S  L  D  K  Q  L  K  M  L  W  K  C  V  L  R  K  N  V  M  S  L  A  I  R  L  S  H  E  L  S  G  Q  N  *  T  G  G  F  F  L  N  V  G  N  G  R  L  Q  K  G  N  E  F  H  S  C  *  Q  G  G  *  C  K  R  A  N  T  G  S  V  L  G  L  L  F  I  G  S  G  L  L  L  K  R  R  D  W  D  F  W  K  Q  R  D  Q  R  H  V  Q  E  *  Y  K  L  S  R  *  Q  T  L  Y  I  V  N  G  R  L  R  G  *  D  *  K  I  N  W  R  I  V  S  K  R :   Q  R  G  S  E  Q  S  I  *  S  R  G  E  V  C  Y  V  H  V  V  L  V  Q  T  *  L  R  G  G  S  F  C  L  L  T  *  Q   : G  A  G  G  G  S  S  N  *  D  E  Q  L  F  H  W  L   </second_frame>
            <third_frame>   K  N  I  K  I  F  K  R  R  P  I  P  F  S  S  L  Y  R  E  H  F  R  R  L  I  S  S  I  V  V  Q  S  S  P  A  N  G  N  G  N  R  I  G  Y  S  E  V  R  S  R  R  R  N  G  F  E  H  S  G  E  *  F  E  L  C  D  G  V  V  P  P  *  T  P  S  P  T  P  S  *  N  Q  N  S  F  H  Y  Y  R  P  R  Y  *  N  Q  A  *  G  R  R  I  T  S  S   : A  I  L  *  V  I  V  K  Q  G  T  A  E  I  E  I  V  D  M  L  I  F  A  G  W  G  A  *  K  A  T  R  S  Q  A  S  C  C  *  K  E  E  :  V  E  H  P  C  E  S  S  E  A  L  G  K  I  R  *  A  *  T  S  S  *  K  C  C  G  N  A  F  *  E  R  T  *  *  A  W  Q  *  G  *  V  T  S  S  A  G  R  I  E  P  E  G  S  S  *  M  *  A  M  E  G  C  K  K  G  T  N  F  T  V  A  N  K  E  G  N  A  R  E  Q  I  Q  G  V  C  W  G  C  Y  S  S  E  A  G  C  C  *  K  E  E  T  G  I  S  G  S  R  E  I  K  G  T  C  K  N  S  T  S  *  A  D  S  K  L  C  I  S  S  T  G  D  *  E  D  K  T  K  R  S  T  G  E  S  S  P  K   : G  K  E  A  Q  S  R  V  F  K  A  E  A  K  S  A  M  F  T  S  F  L  F  R  H  N  C  V  G  G  V  F  V  F  *  R  S  K  :  V  L  E  A  V  H  P  T  K  T  N  N  F  F  I  G  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55145" stop="55384"/>
                    <exon start="57163" stop="57287"/>
                    <exon start="58100" stop="58541"/>
                    <exon start="61329" stop="61441"/>
                    <exon start="62822" stop="62873"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHRSSFNHHLQMEMGIESATPKSDHVAGMALNIPVNDSNYATALFLPRRLRRRLLETKTPSIITAQDIETKLKDAELRRQQFYELLSSKARPKLRLSTCSFSQDGELRKQLEAKLLAAEKKRLSILAKVQKRLARLDELRQAAKNAVEMRFEKERDELGNKVESRAQRAELNRRVLLKCRQWKAAKRERISQLLTRRVMQESKYRECVGAAIHRKRAAAEKKRLGFLEAERSKARARIVQVKQIANSVYRQREIERIRLKDQLENRLQKAKRLRAEYLKQRRSLLCSRRSCSDIIAWGEFLSFNVARCWRRFIQLRRTTFSLAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="63388" PGL_stop="64154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63388" e_stop="63536"/>
            <exon e_start="63813" e_stop="64154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.993"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="63388" e_stop="63536" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="63537" i_stop="63812" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="63813" e_stop="64154" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63388" stop="63536"/>
              <exon start="63813" stop="64154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGTGGAAAGTTAAGGATGTGAAGTTGTTAGAAGAGGATTTAATAAATACTGCTTGTCAACTGGAGCTCTCTCTGATGCAGACTTGCAAGCAGGTTATGGGAGATTACGATGATCTGACAGCCGAATTCAGTTCTTTCCAGAGGCAG : GTGATTGAAAATCAGAAACTTATTTGGGCAAAGGTCAAGCAGCTGAGTGGTAATGCTGGACTTGAACGTCTGGAGCATGCTCTTTCTGAGCTGCGGTCTAGGTTTATTGACTCCATGGAGACTGATTCTCCGAGTTCAGTTGGTTCATCTGATAACTCTGAAATCAAGAATTCAGATGAGTTCAATGAAAATGCCAGGTGTTATGGTACACAGGGCATTGCTTGGCCCGTATCTGTGGAAGATGATTCATACTTGTGCGATAAATGTGGCTCTGGAACTCCTCAAAAAAGCATATCTACTGGTTTATTACGTGCGACTGAGAATGAAGTGCTTTTGAATGAA</gDNA_template>
            <first_frame> *  C  G  K  L  R  M  *  S  C  *  K  R  I  *  *  I  L  L  V  N  W  S  S  L  *  C  R  L  A  S  R  L  W  E  I  T  M  I  *  Q  P  N  S  V  L  S  R  G  R :   *  L  K  I  R  N  L  F  G  Q  R  S  S  S  *  V  V  M  L  D  L  N  V  W  S  M  L  F  L  S  C  G  L  G  L  L  T  P  W  R  L  I  L  R  V  Q  L  V  H  L  I  T  L  K  S  R  I  Q  M  S  S  M  K  M  P  G  V  M  V  H  R  A  L  L  G  P  Y  L  W  K  M  I  H  T  C  A  I  N  V  A  L  E  L  L  K  K  A  Y  L  L  V  Y  Y  V  R  L  R  M  K  C  F  *  M   </first_frame>
            <second_frame>  D  V  E  S  *  G  C  E  V  V  R  R  G  F  N  K  Y  C  L  S  T  G  A  L  S  D  A  D  L  Q  A  G  Y  G  R  L  R  *  S  D  S  R  I  Q  F  F  P  E  A   : G  D  *  K  S  E  T  Y  L  G  K  G  Q  A  A  E  W  *  C  W  T  *  T  S  G  A  C  S  F  *  A  A  V  *  V  Y  *  L  H  G  D  *  F  S  E  F  S  W  F  I  *  *  L  *  N  Q  E  F  R  *  V  Q  *  K  C  Q  V  L  W  Y  T  G  H  C  L  A  R  I  C  G  R  *  F  I  L  V  R  *  M  W  L  W  N  S  S  K  K  H  I  Y  W  F  I  T  C  D  *  E  *  S  A  F  E  *  </second_frame>
            <third_frame>   M  W  K  V  K  D  V  K  L  L  E  E  D  L  I  N  T  A  C  Q  L  E  L  S  L  M  Q  T  C  K  Q  V  M  G  D  Y  D  D  L  T  A  E  F  S  S  F  Q  R  Q  :  V  I  E  N  Q  K  L  I  W  A  K  V  K  Q  L  S  G  N  A  G  L  E  R  L  E  H  A  L  S  E  L  R  S  R  F  I  D  S  M  E  T  D  S  P  S  S  V  G  S  S  D  N  S  E  I  K  N  S  D  E  F  N  E  N  A  R  C  Y  G  T  Q  G  I  A  W  P  V  S  V  E  D  D  S  Y  L  C  D  K  C  G  S  G  T  P  Q  K  S  I  S  T  G  L  L  R  A  T  E  N  E  V  L  L  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63390" stop="63536"/>
                    <exon start="63813" stop="64154"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MWKVKDVKLLEEDLINTACQLELSLMQTCKQVMGDYDDLTAEFSSFQRQVIENQKLIWAKVKQLSGNAGLERLEHALSELRSRFIDSMETDSPSSVGSSDNSEIKNSDEFNENARCYGTQGIAWPVSVEDDSYLCDKCGSGTPQKSISTGLLRATENEVLLNE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="64653" PGL_stop="73613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64751" e_stop="64820"/>
            <exon e_start="65182" e_stop="65503"/>
            <exon e_start="65597" e_stop="65777"/>
            <exon e_start="66608" e_stop="67262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64751" e_stop="64820" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.851">
            <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65182" e_stop="65503" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.850">
            <gDNA_intron_boundary i_start="65504" i_stop="65596" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65597" e_stop="65777" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="66608" e_stop="67262" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64751" stop="64820"/>
              <exon start="65182" stop="65503"/>
              <exon start="65597" stop="65738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64751" stop="64820"/>
              <exon start="65182" stop="65481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64760" stop="64820"/>
              <exon start="65182" stop="65503"/>
              <exon start="65597" stop="65675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65319" stop="65503"/>
              <exon start="65597" stop="65777"/>
              <exon start="66608" stop="66942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65636" stop="65777"/>
              <exon start="66608" stop="67220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66778" stop="67262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG : AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATG : CCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAG : CATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTATATTTCAAAT</gDNA_template>
            <first_frame> R  K  *  H  C  I  V  C  F  F  G  Y  Q  G  F  A  I  C  S  K  A  D  *   : E  T  Q  R  *  N  K  Q  S  T  H  Q  I  V  G  T  I  N  Q  G  T  C  W  F  *  I  P  *  K  F  F  F  Q  P  L  W  S  S  Y  *  G  S  N  L  S  T  I  S  E  A  M  A  I  F  C  H  V  S  G  C  A  R  V  G  *  P  P  E  F  I  I  I  S  E  V  E  Q  W  G  T  F  F  G  E  S  S  N  H  T  *  S  W  R  *  L  S  K  D  I  R  S  S  N  P  E  D  *  C :   R  T  T  R  M  Q  G  R  *  G  *  S  I  F  K  A  W  F  V  A  T  C  L  *  N  *  G  V  D  R  G  N  T  T  R  D  F  E  I  E  F  L  Q  I  E  S  C  P  G  Y  P  P  E  N  H  C  C  L  Y  *  :  H  I  G  F  A  A  D  S  S  C  R  M  P  G  *  Q  P  L  R  D  G  R  Y  I  I  K  I  Y  Y  K  A  V  *  A  S  G  *  H  G  G  C  W  Y  Y  *  S  C  *  Y  T  E  P  L  L  R  R  *  *  A  K  E  A  S  S  E  E  G  D  H  G  E  R  V  G  K  E  L  A  S  R  G  C  H  F  H  S  S  F  A  H  C  F  F  G  S  K  S  N  F  T  L  R  K  C  S  *  G  W  A  I  G  G  E  H  P  E  T  C  W  C  Q  S  T  H  W  K  A  G  *  G  Y  E  R  S  V  G  C  G  N  C  V  S  Q  S  S  W  F  M  V  C  R  G  A  *  K  Y  E  S  F  I  A  H  T  L  V  Q  E  I  V  S  L  H  S  Y  M  N  V  *  D  G  K  V  D  L  T  I  C  N  I  M  Y  Y  E  R  S  I  V  S  K  Y  N  N  K  N  R  S  Q  E  H  A  N  Y  M  S  L  Y  F  K  </first_frame>
            <second_frame>  E  N  S  T  A  L  F  A  S  L  V  I  K  G  L  Q  F  V  L  R  Q  I  K  :  K  L  K  G  E  I  S  K  A  R  I  K  L  L  E  P  L  I  K  G  P  A  G  F  E  Y  L  R  S  S  F  S  N  R  Y  G  P  P  T  E  A  L  I  S  L  P  L  V  K  Q  W  L  S  S  V  M  L  V  A  V  Q  E  W  D  D  H  L  S  S  L  S  S  L  R  L  S  S  G  A  H  S  S  E  K  A  P  I  T  L  R  A  G  G  S  S  L  R  I  S  D  P  P  T  L  K  T  N   : A  E  Q  P  E  C  K  G  D  K  V  D  L  F  L  R  L  G  L  L  Q  L  V  C  E  I  E  G  L  T  V  E  T  L  P  E  T  L  K  L  N  F  S  R  L  R  A  V  Q  A  I  L  Q  K  I  I  V  V  C  T  S :   I  L  V  L  R  Q  T  L  L  A  E  C  L  V  S  S  P  S  E  M  E  D  I  S  S  K  S  I  T  K  L  F  K  L  L  D  N  M  E  D  A  G  I  T  E  V  V  D  T  L  S  L  C  L  E  G  D  E  P  K  K  L  Q  A  R  K  E  I  M  A  N  V  L  A  K  S  L  R  A  G  D  A  I  F  T  R  V  S  R  T  V  F  L  A  A  K  A  I  L  L  C  G  S  V  A  E  G  G  Q  L  A  E  N  T  L  K  R  V  G  A  N  L  L  T  G  K  L  V  E  A  M  K  D  L  L  V  V  A  T  V  S  A  R  V  H  G  S  W  Y  V  E  V  L  K  N  M  R  A  L  *  H  T  H  L  F  K  K  L  S  A  C  I  L  T  *  M  Y  R  T  G  K  L  I  L  L  Y  A  I  *  C  I  M  K  E  V  L  F  L  N  I  I  I  K  I  V  A  K  N  T  P  I  I  *  A  Y  I  S  N </second_frame>
            <third_frame>   K  I  A  L  H  C  L  L  L  W  L  S  R  V  C  N  L  F  *  G  R  L  R :   N  S  K  V  K  *  A  K  H  A  S  N  C  W  N  H  *  S  R  D  L  L  V  L  N  T  L  E  V  L  F  P  T  A  M  V  L  L  L  R  L  *  S  L  Y  H  *  *  S  N  G  Y  L  L  S  C  *  W  L  C  K  S  G  M  T  T  *  V  H  Y  H  L  *  G  *  A  V  G  H  I  L  R  R  K  L  Q  S  H  L  E  L  E  V  A  L  *  G  Y  Q  I  L  Q  P  *  R  L  M  :  P  N  N  Q  N  A  R  E  I  R  L  I  Y  F  *  G  L  V  C  C  N  L  S  V  K  L  R  G  *  P  W  K  H  Y  P  R  L  *  N  *  I  S  P  D  *  E  L  S  R  L  S  S  R  K  S  L  L  S  V  L   : A  Y  W  F  C  G  R  L  F  L  P  N  A  W  L  A  A  P  Q  R  W  K  I  Y  H  Q  N  L  L  Q  S  C  L  S  F  W  I  T  W  R  M  L  V  L  L  K  L  L  I  H  *  A  F  A  *  K  V  M  S  Q  R  S  F  K  R  G  R  R  S  W  R  T  C  W  Q  R  A  C  E  Q  G  M  P  F  S  L  E  F  R  A  L  F  F  W  Q  Q  K  Q  F  Y  F  A  E  V  *  L  R  V  G  N  W  R  R  T  P  *  N  V  L  V  P  I  Y  S  L  E  S  W  L  R  L  *  K  I  C  W  L  W  Q  L  C  Q  P  E  F  M  V  H  G  M  *  R  C  L  K  I  *  E  L  Y  S  T  H  T  C  S  R  N  C  Q  L  A  F  L  H  E  C  I  G  R  E  S  *  S  Y  Y  M  Q  Y  N  V  L  *  K  K  Y  C  F  *  I  *  *  *  K  S  *  P  R  T  R  Q  L  Y  E  P  I  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64752" stop="64820"/>
                    <exon start="65182" stop="65503"/>
                    <exon start="65597" stop="65777"/>
                    <exon start="66608" stop="67088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENSTALFASLVIKGLQFVLRQIKKLKGEISKARIKLLEPLIKGPAGFEYLRSSFSNRYGPPTEALISLPLVKQWLSSVMLVAVQEWDDHLSSLSSLRLSSGAHSSEKAPITLRAGGSSLRISDPPTLKTNAEQPECKGDKVDLFLRLGLLQLVCEIEGLTVETLPETLKLNFSRLRAVQAILQKIIVVCTSILVLRQTLLAECLVSSPSEMEDISSKSITKLFKLLDNMEDAGITEVVDTLSLCLEGDEPKKLQARKEIMANVLAKSLRAGDAIFTRVSRTVFLAAKAILLCGSVAEGGQLAENTLKRVGANLLTGKLVEAMKDLLVVATVSARVHGSWYVEVLKNMRAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64751" e_stop="64820"/>
            <exon e_start="65182" e_stop="65503"/>
            <exon e_start="65597" e_stop="65777"/>
            <exon e_start="66608" e_stop="67220"/>
            <exon e_start="73586" e_stop="73613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.953"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64751" e_stop="64820" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.851">
            <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65182" e_stop="65503" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.850">
            <gDNA_intron_boundary i_start="65504" i_stop="65596" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65597" e_stop="65777" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="66608" e_stop="67220" e_length="613"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67221" i_stop="73585" i_length="6365"/>
          </intron>
          <exon e_serial="5" e_score="0.857">
            <gDNA_exon_boundary e_start="73586" e_stop="73613" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64751" stop="64820"/>
              <exon start="65182" stop="65503"/>
              <exon start="65597" stop="65738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64751" stop="64820"/>
              <exon start="65182" stop="65481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64760" stop="64820"/>
              <exon start="65182" stop="65503"/>
              <exon start="65597" stop="65675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65319" stop="65503"/>
              <exon start="65597" stop="65777"/>
              <exon start="66608" stop="66942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65636" stop="65777"/>
              <exon start="66608" stop="67220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66833" stop="67220"/>
              <exon start="73586" stop="73613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427529" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG : AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATG : CCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAG : CATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATC : ACAATTTTAGAAAAAAAAAAACAAATTA</gDNA_template>
            <first_frame> R  K  *  H  C  I  V  C  F  F  G  Y  Q  G  F  A  I  C  S  K  A  D  *   : E  T  Q  R  *  N  K  Q  S  T  H  Q  I  V  G  T  I  N  Q  G  T  C  W  F  *  I  P  *  K  F  F  F  Q  P  L  W  S  S  Y  *  G  S  N  L  S  T  I  S  E  A  M  A  I  F  C  H  V  S  G  C  A  R  V  G  *  P  P  E  F  I  I  I  S  E  V  E  Q  W  G  T  F  F  G  E  S  S  N  H  T  *  S  W  R  *  L  S  K  D  I  R  S  S  N  P  E  D  *  C :   R  T  T  R  M  Q  G  R  *  G  *  S  I  F  K  A  W  F  V  A  T  C  L  *  N  *  G  V  D  R  G  N  T  T  R  D  F  E  I  E  F  L  Q  I  E  S  C  P  G  Y  P  P  E  N  H  C  C  L  Y  *  :  H  I  G  F  A  A  D  S  S  C  R  M  P  G  *  Q  P  L  R  D  G  R  Y  I  I  K  I  Y  Y  K  A  V  *  A  S  G  *  H  G  G  C  W  Y  Y  *  S  C  *  Y  T  E  P  L  L  R  R  *  *  A  K  E  A  S  S  E  E  G  D  H  G  E  R  V  G  K  E  L  A  S  R  G  C  H  F  H  S  S  F  A  H  C  F  F  G  S  K  S  N  F  T  L  R  K  C  S  *  G  W  A  I  G  G  E  H  P  E  T  C  W  C  Q  S  T  H  W  K  A  G  *  G  Y  E  R  S  V  G  C  G  N  C  V  S  Q  S  S  W  F  M  V  C  R  G  A  *  K  Y  E  S  F  I  A  H  T  L  V  Q  E  I  V  S  L  H  S  Y  M  N  V  *  D  G  K  V  D  L  T  I  C  N  I  M  Y  Y  E  R  S  I  V  S  K  Y  N  N  K  N   : H  N  F  R  K  K  K  T  N   </first_frame>
            <second_frame>  E  N  S  T  A  L  F  A  S  L  V  I  K  G  L  Q  F  V  L  R  Q  I  K  :  K  L  K  G  E  I  S  K  A  R  I  K  L  L  E  P  L  I  K  G  P  A  G  F  E  Y  L  R  S  S  F  S  N  R  Y  G  P  P  T  E  A  L  I  S  L  P  L  V  K  Q  W  L  S  S  V  M  L  V  A  V  Q  E  W  D  D  H  L  S  S  L  S  S  L  R  L  S  S  G  A  H  S  S  E  K  A  P  I  T  L  R  A  G  G  S  S  L  R  I  S  D  P  P  T  L  K  T  N   : A  E  Q  P  E  C  K  G  D  K  V  D  L  F  L  R  L  G  L  L  Q  L  V  C  E  I  E  G  L  T  V  E  T  L  P  E  T  L  K  L  N  F  S  R  L  R  A  V  Q  A  I  L  Q  K  I  I  V  V  C  T  S :   I  L  V  L  R  Q  T  L  L  A  E  C  L  V  S  S  P  S  E  M  E  D  I  S  S  K  S  I  T  K  L  F  K  L  L  D  N  M  E  D  A  G  I  T  E  V  V  D  T  L  S  L  C  L  E  G  D  E  P  K  K  L  Q  A  R  K  E  I  M  A  N  V  L  A  K  S  L  R  A  G  D  A  I  F  T  R  V  S  R  T  V  F  L  A  A  K  A  I  L  L  C  G  S  V  A  E  G  G  Q  L  A  E  N  T  L  K  R  V  G  A  N  L  L  T  G  K  L  V  E  A  M  K  D  L  L  V  V  A  T  V  S  A  R  V  H  G  S  W  Y  V  E  V  L  K  N  M  R  A  L  *  H  T  H  L  F  K  K  L  S  A  C  I  L  T  *  M  Y  R  T  G  K  L  I  L  L  Y  A  I  *  C  I  M  K  E  V  L  F  L  N  I  I  I  K  I  :  T  I  L  E  K  K  K  Q  I  </second_frame>
            <third_frame>   K  I  A  L  H  C  L  L  L  W  L  S  R  V  C  N  L  F  *  G  R  L  R :   N  S  K  V  K  *  A  K  H  A  S  N  C  W  N  H  *  S  R  D  L  L  V  L  N  T  L  E  V  L  F  P  T  A  M  V  L  L  L  R  L  *  S  L  Y  H  *  *  S  N  G  Y  L  L  S  C  *  W  L  C  K  S  G  M  T  T  *  V  H  Y  H  L  *  G  *  A  V  G  H  I  L  R  R  K  L  Q  S  H  L  E  L  E  V  A  L  *  G  Y  Q  I  L  Q  P  *  R  L  M  :  P  N  N  Q  N  A  R  E  I  R  L  I  Y  F  *  G  L  V  C  C  N  L  S  V  K  L  R  G  *  P  W  K  H  Y  P  R  L  *  N  *  I  S  P  D  *  E  L  S  R  L  S  S  R  K  S  L  L  S  V  L   : A  Y  W  F  C  G  R  L  F  L  P  N  A  W  L  A  A  P  Q  R  W  K  I  Y  H  Q  N  L  L  Q  S  C  L  S  F  W  I  T  W  R  M  L  V  L  L  K  L  L  I  H  *  A  F  A  *  K  V  M  S  Q  R  S  F  K  R  G  R  R  S  W  R  T  C  W  Q  R  A  C  E  Q  G  M  P  F  S  L  E  F  R  A  L  F  F  W  Q  Q  K  Q  F  Y  F  A  E  V  *  L  R  V  G  N  W  R  R  T  P  *  N  V  L  V  P  I  Y  S  L  E  S  W  L  R  L  *  K  I  C  W  L  W  Q  L  C  Q  P  E  F  M  V  H  G  M  *  R  C  L  K  I  *  E  L  Y  S  T  H  T  C  S  R  N  C  Q  L  A  F  L  H  E  C  I  G  R  E  S  *  S  Y  Y  M  Q  Y  N  V  L  *  K  K  Y  C  F  *  I  *  *  *  K  S :   Q  F  *  K  K  K  N  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64752" stop="64820"/>
                    <exon start="65182" stop="65503"/>
                    <exon start="65597" stop="65777"/>
                    <exon start="66608" stop="67088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENSTALFASLVIKGLQFVLRQIKKLKGEISKARIKLLEPLIKGPAGFEYLRSSFSNRYGPPTEALISLPLVKQWLSSVMLVAVQEWDDHLSSLSSLRLSSGAHSSEKAPITLRAGGSSLRISDPPTLKTNAEQPECKGDKVDLFLRLGLLQLVCEIEGLTVETLPETLKLNFSRLRAVQAILQKIIVVCTSILVLRQTLLAECLVSSPSEMEDISSKSITKLFKLLDNMEDAGITEVVDTLSLCLEGDEPKKLQARKEIMANVLAKSLRAGDAIFTRVSRTVFLAAKAILLCGSVAEGGQLAENTLKRVGANLLTGKLVEAMKDLLVVATVSARVHGSWYVEVLKNMRAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="64653" e_stop="64820"/>
            <exon e_start="65182" e_stop="65503"/>
            <exon e_start="65594" e_stop="65777"/>
            <exon e_start="66608" e_stop="67262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.851" e_score="0.976"/>
          <exon-intron don_prob="0.992" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="64653" e_stop="64820" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.851">
            <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65182" e_stop="65503" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.902">
            <gDNA_intron_boundary i_start="65504" i_stop="65593" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65594" e_stop="65777" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="66608" e_stop="67262" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64653" stop="64820"/>
              <exon start="65182" stop="65503"/>
              <exon start="65594" stop="65777"/>
              <exon start="66608" stop="66709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64653" stop="64820"/>
              <exon start="65182" stop="65503"/>
              <exon start="65594" stop="65777"/>
              <exon start="66608" stop="66658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64751" stop="64820"/>
              <exon start="65182" stop="65481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65315" stop="65503"/>
              <exon start="65594" stop="65777"/>
              <exon start="66608" stop="66892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65636" stop="65777"/>
              <exon start="66608" stop="67220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66778" stop="67262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTACTTTGAGGAAACTCTCAGCACCTTTGGTTGAAGATGAATTGAATACTAATCACCAGAAATTCCTGAAAGAACTAGGGGAAAATACTCGGGGCAGAGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG : AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATG : CAGCCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAG : CATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTATATTTCAAAT</gDNA_template>
            <first_frame> V  T  L  R  K  L  S  A  P  L  V  E  D  E  L  N  T  N  H  Q  K  F  L  K  E  L  G  E  N  T  R  G  R  E  N  S  T  A  L  F  A  S  L  V  I  K  G  L  Q  F  V  L  R  Q  I  K  :  K  L  K  G  E  I  S  K  A  R  I  K  L  L  E  P  L  I  K  G  P  A  G  F  E  Y  L  R  S  S  F  S  N  R  Y  G  P  P  T  E  A  L  I  S  L  P  L  V  K  Q  W  L  S  S  V  M  L  V  A  V  Q  E  W  D  D  H  L  S  S  L  S  S  L  R  L  S  S  G  A  H  S  S  E  K  A  P  I  T  L  R  A  G  G  S  S  L  R  I  S  D  P  P  T  L  K  T  N   : A  A  E  Q  P  E  C  K  G  D  K  V  D  L  F  L  R  L  G  L  L  Q  L  V  C  E  I  E  G  L  T  V  E  T  L  P  E  T  L  K  L  N  F  S  R  L  R  A  V  Q  A  I  L  Q  K  I  I  V  V  C  T  S :   I  L  V  L  R  Q  T  L  L  A  E  C  L  V  S  S  P  S  E  M  E  D  I  S  S  K  S  I  T  K  L  F  K  L  L  D  N  M  E  D  A  G  I  T  E  V  V  D  T  L  S  L  C  L  E  G  D  E  P  K  K  L  Q  A  R  K  E  I  M  A  N  V  L  A  K  S  L  R  A  G  D  A  I  F  T  R  V  S  R  T  V  F  L  A  A  K  A  I  L  L  C  G  S  V  A  E  G  G  Q  L  A  E  N  T  L  K  R  V  G  A  N  L  L  T  G  K  L  V  E  A  M  K  D  L  L  V  V  A  T  V  S  A  R  V  H  G  S  W  Y  V  E  V  L  K  N  M  R  A  L  *  H  T  H  L  F  K  K  L  S  A  C  I  L  T  *  M  Y  R  T  G  K  L  I  L  L  Y  A  I  *  C  I  M  K  E  V  L  F  L  N  I  I  I  K  I  V  A  K  N  T  P  I  I  *  A  Y  I  S  N </first_frame>
            <second_frame>  L  L  *  G  N  S  Q  H  L  W  L  K  M  N  *  I  L  I  T  R  N  S  *  K  N  *  G  K  I  L  G  A  E  K  I  A  L  H  C  L  L  L  W  L  S  R  V  C  N  L  F  *  G  R  L  R :   N  S  K  V  K  *  A  K  H  A  S  N  C  W  N  H  *  S  R  D  L  L  V  L  N  T  L  E  V  L  F  P  T  A  M  V  L  L  L  R  L  *  S  L  Y  H  *  *  S  N  G  Y  L  L  S  C  *  W  L  C  K  S  G  M  T  T  *  V  H  Y  H  L  *  G  *  A  V  G  H  I  L  R  R  K  L  Q  S  H  L  E  L  E  V  A  L  *  G  Y  Q  I  L  Q  P  *  R  L  M  :  Q  P  N  N  Q  N  A  R  E  I  R  L  I  Y  F  *  G  L  V  C  C  N  L  S  V  K  L  R  G  *  P  W  K  H  Y  P  R  L  *  N  *  I  S  P  D  *  E  L  S  R  L  S  S  R  K  S  L  L  S  V  L   : A  Y  W  F  C  G  R  L  F  L  P  N  A  W  L  A  A  P  Q  R  W  K  I  Y  H  Q  N  L  L  Q  S  C  L  S  F  W  I  T  W  R  M  L  V  L  L  K  L  L  I  H  *  A  F  A  *  K  V  M  S  Q  R  S  F  K  R  G  R  R  S  W  R  T  C  W  Q  R  A  C  E  Q  G  M  P  F  S  L  E  F  R  A  L  F  F  W  Q  Q  K  Q  F  Y  F  A  E  V  *  L  R  V  G  N  W  R  R  T  P  *  N  V  L  V  P  I  Y  S  L  E  S  W  L  R  L  *  K  I  C  W  L  W  Q  L  C  Q  P  E  F  M  V  H  G  M  *  R  C  L  K  I  *  E  L  Y  S  T  H  T  C  S  R  N  C  Q  L  A  F  L  H  E  C  I  G  R  E  S  *  S  Y  Y  M  Q  Y  N  V  L  *  K  K  Y  C  F  *  I  *  *  *  K  S  *  P  R  T  R  Q  L  Y  E  P  I  F  Q   </second_frame>
            <third_frame>   Y  F  E  E  T  L  S  T  F  G  *  R  *  I  E  Y  *  S  P  E  I  P  E  R  T  R  G  K  Y  S  G  Q  R  K  *  H  C  I  V  C  F  F  G  Y  Q  G  F  A  I  C  S  K  A  D  *   : E  T  Q  R  *  N  K  Q  S  T  H  Q  I  V  G  T  I  N  Q  G  T  C  W  F  *  I  P  *  K  F  F  F  Q  P  L  W  S  S  Y  *  G  S  N  L  S  T  I  S  E  A  M  A  I  F  C  H  V  S  G  C  A  R  V  G  *  P  P  E  F  I  I  I  S  E  V  E  Q  W  G  T  F  F  G  E  S  S  N  H  T  *  S  W  R  *  L  S  K  D  I  R  S  S  N  P  E  D  *  C :   S  R  T  T  R  M  Q  G  R  *  G  *  S  I  F  K  A  W  F  V  A  T  C  L  *  N  *  G  V  D  R  G  N  T  T  R  D  F  E  I  E  F  L  Q  I  E  S  C  P  G  Y  P  P  E  N  H  C  C  L  Y  *  :  H  I  G  F  A  A  D  S  S  C  R  M  P  G  *  Q  P  L  R  D  G  R  Y  I  I  K  I  Y  Y  K  A  V  *  A  S  G  *  H  G  G  C  W  Y  Y  *  S  C  *  Y  T  E  P  L  L  R  R  *  *  A  K  E  A  S  S  E  E  G  D  H  G  E  R  V  G  K  E  L  A  S  R  G  C  H  F  H  S  S  F  A  H  C  F  F  G  S  K  S  N  F  T  L  R  K  C  S  *  G  W  A  I  G  G  E  H  P  E  T  C  W  C  Q  S  T  H  W  K  A  G  *  G  Y  E  R  S  V  G  C  G  N  C  V  S  Q  S  S  W  F  M  V  C  R  G  A  *  K  Y  E  S  F  I  A  H  T  L  V  Q  E  I  V  S  L  H  S  Y  M  N  V  *  D  G  K  V  D  L  T  I  C  N  I  M  Y  Y  E  R  S  I  V  S  K  Y  N  N  K  N  R  S  Q  E  H  A  N  Y  M  S  L  Y  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64653" stop="64820"/>
                    <exon start="65182" stop="65503"/>
                    <exon start="65594" stop="65777"/>
                    <exon start="66608" stop="67088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTLRKLSAPLVEDELNTNHQKFLKELGENTRGRENSTALFASLVIKGLQFVLRQIKKLKGEISKARIKLLEPLIKGPAGFEYLRSSFSNRYGPPTEALISLPLVKQWLSSVMLVAVQEWDDHLSSLSSLRLSSGAHSSEKAPITLRAGGSSLRISDPPTLKTNAAEQPECKGDKVDLFLRLGLLQLVCEIEGLTVETLPETLKLNFSRLRAVQAILQKIIVVCTSILVLRQTLLAECLVSSPSEMEDISSKSITKLFKLLDNMEDAGITEVVDTLSLCLEGDEPKKLQARKEIMANVLAKSLRAGDAIFTRVSRTVFLAAKAILLCGSVAEGGQLAENTLKRVGANLLTGKLVEAMKDLLVVATVSARVHGSWYVEVLKNMRAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="66535" e_stop="67262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="66535" e_stop="67262" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66535" stop="67082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66778" stop="67262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGATGTAGTGGAGGAGGATCTCTTTGCTTGCTAATTTTTTATTTATTTATTTTTTGTGTGTGTGTTTGCAGCATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTATATTTCAAAT</gDNA_template>
            <first_frame> H  D  V  V  E  E  D  L  F  A  C  *  F  F  I  Y  L  F  F  V  C  V  F  A  A  Y  W  F  C  G  R  L  F  L  P  N  A  W  L  A  A  P  Q  R  W  K  I  Y  H  Q  N  L  L  Q  S  C  L  S  F  W  I  T  W  R  M  L  V  L  L  K  L  L  I  H  *  A  F  A  *  K  V  M  S  Q  R  S  F  K  R  G  R  R  S  W  R  T  C  W  Q  R  A  C  E  Q  G  M  P  F  S  L  E  F  R  A  L  F  F  W  Q  Q  K  Q  F  Y  F  A  E  V  *  L  R  V  G  N  W  R  R  T  P  *  N  V  L  V  P  I  Y  S  L  E  S  W  L  R  L  *  K  I  C  W  L  W  Q  L  C  Q  P  E  F  M  V  H  G  M  *  R  C  L  K  I  *  E  L  Y  S  T  H  T  C  S  R  N  C  Q  L  A  F  L  H  E  C  I  G  R  E  S  *  S  Y  Y  M  Q  Y  N  V  L  *  K  K  Y  C  F  *  I  *  *  *  K  S  *  P  R  T  R  Q  L  Y  E  P  I  F  Q   </first_frame>
            <second_frame>  M  M  *  W  R  R  I  S  L  L  A  N  F  L  F  I  Y  F  L  C  V  C  L  Q  H  I  G  F  A  A  D  S  S  C  R  M  P  G  *  Q  P  L  R  D  G  R  Y  I  I  K  I  Y  Y  K  A  V  *  A  S  G  *  H  G  G  C  W  Y  Y  *  S  C  *  Y  T  E  P  L  L  R  R  *  *  A  K  E  A  S  S  E  E  G  D  H  G  E  R  V  G  K  E  L  A  S  R  G  C  H  F  H  S  S  F  A  H  C  F  F  G  S  K  S  N  F  T  L  R  K  C  S  *  G  W  A  I  G  G  E  H  P  E  T  C  W  C  Q  S  T  H  W  K  A  G  *  G  Y  E  R  S  V  G  C  G  N  C  V  S  Q  S  S  W  F  M  V  C  R  G  A  *  K  Y  E  S  F  I  A  H  T  L  V  Q  E  I  V  S  L  H  S  Y  M  N  V  *  D  G  K  V  D  L  T  I  C  N  I  M  Y  Y  E  R  S  I  V  S  K  Y  N  N  K  N  R  S  Q  E  H  A  N  Y  M  S  L  Y  F  K  </second_frame>
            <third_frame>   *  C  S  G  G  G  S  L  C  L  L  I  F  Y  L  F  I  F  C  V  C  V  C  S  I  L  V  L  R  Q  T  L  L  A  E  C  L  V  S  S  P  S  E  M  E  D  I  S  S  K  S  I  T  K  L  F  K  L  L  D  N  M  E  D  A  G  I  T  E  V  V  D  T  L  S  L  C  L  E  G  D  E  P  K  K  L  Q  A  R  K  E  I  M  A  N  V  L  A  K  S  L  R  A  G  D  A  I  F  T  R  V  S  R  T  V  F  L  A  A  K  A  I  L  L  C  G  S  V  A  E  G  G  Q  L  A  E  N  T  L  K  R  V  G  A  N  L  L  T  G  K  L  V  E  A  M  K  D  L  L  V  V  A  T  V  S  A  R  V  H  G  S  W  Y  V  E  V  L  K  N  M  R  A  L  *  H  T  H  L  F  K  K  L  S  A  C  I  L  T  *  M  Y  R  T  G  K  L  I  L  L  Y  A  I  *  C  I  M  K  E  V  L  F  L  N  I  I  I  K  I  V  A  K  N  T  P  I  I  *  A  Y  I  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66540" stop="67088"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGGGSLCLLIFYLFIFCVCVCSILVLRQTLLAECLVSSPSEMEDISSKSITKLFKLLDNMEDAGITEVVDTLSLCLEGDEPKKLQARKEIMANVLAKSLRAGDAIFTRVSRTVFLAAKAILLCGSVAEGGQLAENTLKRVGANLLTGKLVEAMKDLLVVATVSARVHGSWYVEVLKNMRAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="80590" PGL_stop="76482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80590" e_stop="80458"/>
            <exon e_start="80336" e_stop="80180"/>
            <exon e_start="79097" e_stop="78949"/>
            <exon e_start="78872" e_stop="78595"/>
            <exon e_start="77642" e_stop="76482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="0.977"/>
          <exon-intron don_prob="0.409" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.853" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="80590" e_stop="80458" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80336" e_stop="80180" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.409" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79097" e_stop="78949" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="78948" i_stop="78873" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78872" e_stop="78595" e_length="278"/>
          </exon>
          <intron i_serial="4" don_prob="0.914" acc_prob="0.853">
            <gDNA_intron_boundary i_start="78594" i_stop="77643" i_length="952"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="77642" e_stop="76482" e_length="1161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80590" stop="80458"/>
              <exon start="80336" stop="80180"/>
              <exon start="79097" stop="78949"/>
              <exon start="78872" stop="78764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80558" stop="80458"/>
              <exon start="80336" stop="80180"/>
              <exon start="79097" stop="78949"/>
              <exon start="78872" stop="78596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80558" stop="80458"/>
              <exon start="80336" stop="80180"/>
              <exon start="79097" stop="78949"/>
              <exon start="78872" stop="78675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80558" stop="80458"/>
              <exon start="80336" stop="80180"/>
              <exon start="79097" stop="78949"/>
              <exon start="78872" stop="78720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79067" stop="78949"/>
              <exon start="78872" stop="78595"/>
              <exon start="77642" stop="77207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77376" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77362" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77284" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77269" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77028" stop="76551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76988" stop="76551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76733" stop="76482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTATCTTCTATGTTCTCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAG : AGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTT : GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTG : GCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACA : TTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAAACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCATGTAATACTTTTAATCTTTATATTTGAATTAGATGTCGTTGAATTAAATTAATTAG</gDNA_template>
            <first_frame> T  L  S  S  M  F  S  L  I  F  H  R  Y  K  L  V  F  S  L  N  I  F  L  I  L  F  W  *  C  S  K  F  S  V  S  T  L  C  H  R  H  T  K  R   : E  V  V  S  A  S  S  S  *  D  I  S  P  K  *  I  T  S  I  F  R  V  G  I  S  N  N  A  F  Q  S  Q  E  C  *  N  Y  R  L  P  Y  D  M  V  G  G  V  V  *  K  R  V  L :   K  G  Q  K  Y  V  A  L  G  *  T  G  *  E  T  *  *  S  N  C  N  V  R  D  L  G  H  *  E  A  I  *  T  G  C  *  D  W  S  T  L  V  V  H  P  R  Y  Y  A   : G  *  A  D  K  I  L  D  M  T  I  P  A  E  G  P  Y  C  I  Q  T  L  H  E  R  I  E  F  V  G  *  I  I  S  *  N  F  P  L  L  V  F  S  W  K  M  S  P  T  F  T  C  G  R  N  I  V  L  K  M  L  S  R  P  L  *  L  H  S  M  *  K  I  C  C  R  R  *  H  Q  N  F  L  F  Y  C  P  K  E  S  F  C  T  :  L  A  L  N  S  V  R  T  T  L  R  Y  N  V  S  Y  K  V  G  V  S  *  L  T  Y  D  K  W  R  A  L  T  M  H  R  S  L  T  K  K  V  W  *  P  Q  K  N  F  P  *  I  *  R  R  E  T  S  I  R  K  F  V  R  S  L  L  A  K  T  I  N  R  F  *  L  N  N  Q  Y  I  V  I  L  D  Y  I  Y  *  F  P  Y  F  V  S  *  N  K  N  L  Y  *  K  N  I  C  E  V  I  I  S  I  Y  S  *  S  W  I  H  Y  K  L  P  Q  M  L  H  L  I  C  M  *  Q  R  I  N  C  T  C  N  G  K  S  Q  I  L  Q  I  I  S  E  T  I  K  F  C  P  *  L  A  V  N  T  R  E  K  L  F  *  Y  H  H  L  Y  I  G  I  C  D  I  A  *  Y  P  M  A  L  S  *  *  L  I  Y  V  F  L  S  S  Y  Y  L  P  L  D  S  L  M  G  S  K  I  N  *  Q  L  K  S  S  L  W  S  I  *  I  *  R  V  C  K  S  A  M  V  C  D  V  T  F  *  K  L  Y  L  D  *  C  V  L  L  Y  Y  Y  P  V  C  S  S  C  V  I  Y  L  G  G  M  L  S  I  F  S  P  Q  K  K  M  V  V  L  F  F  K  I  *  N  Q  I  L  L  S  *  V  N  *  S  K  F  P  R  W  K  L  E  I  I  C  Q  N  M  R  R  F  K  N  L  L  C  N  S  G  *  K  L  *  V  A  H  I  F  L  S  N  V  C  K  K  Y  N  *  I  Q  S  V  Y  E  L  K  Q  L  F  V  *  S  N  M  L  H  *  Y  I  Y  Q  I  N  I  K  V  A  *  C  M  *  Y  F  *  S  L  Y  L  N  *  M  S  L  N  *  I  N  * </first_frame>
            <second_frame>  L  Y  L  L  C  S  L  *  F  F  I  G  T  N  *  F  S  L  *  I  F  S  *  S  C  F  G  S  V  Q  N  F  Q  *  V  P  C  A  I  G  I  Q  S  E  :  R  L  Y  L  L  A  Q  A  K  I  F  R  Q  S  R  *  H  Q  F  S  E  L  G  F  Q  I  M  L  F  N  L  K  N  V  K  I  I  G  C  L  M  T  W  L  E  A  W  S  E  R  E  F   : *  K  V  K  S  M  L  H  L  A  E  L  V  E  K  H  N  D  Q  I  A  T  F  E  T  W  D  T  E  K  P  Y  E  Q  A  V  K  I  G  V  R  W  L  Y  I  P  V  I  M  L  :  A  R  Q  I  K  F  L  I  *  L  F  L  L  K  D  H  I  A  F  K  R  C  M  N  G  L  N  L  L  V  R  L  S  H  E  I  F  L  S  S  C  S  L  G  R  *  A  L  L  S  L  V  A  E  I  S  C  *  K  C  *  A  D  P  F  N  Y  T  L  C  R  K  S  V  A  G  D  S  I  K  I  F  S  F  I  A  Q  K  S  R  F  A  H :   *  L  *  T  Q  *  E  L  H  *  G  T  M  Y  H  I  K  S  G  F  L  D  *  H  T  T  N  G  E  L  *  L  C  I  G  L  S  P  K  R  Y  G  N  L  K  K  T  F  L  E  S  E  D  E  K  L  Q  *  G  N  L  *  G  A  C  W  P  R  P  L  I  G  F  D  *  T  T  N  I  *  S  F  L  I  I  S  I  N  F  L  I  S  Y  H  R  I  R  I  Y  T  K  K  I  F  V  R  L  *  L  A  Y  T  L  S  H  G  Y  T  I  S  F  H  K  C  Y  I  *  Y  V  C  D  K  G  S  I  V  H  V  M  V  S  P  K  S  Y  K  L  Y  Q  R  Q  L  N  F  A  L  N  *  Q  *  T  L  E  K  S  Y  F  D  T  I  I  F  I  L  A  F  V  I  *  L  N  I  Q  W  H  Y  H  D  S  *  F  M  S  S  F  P  H  I  T  C  H  W  T  R  *  W  V  Q  R  L  I  D  N  *  N  P  H  C  G  P  F  K  S  K  E  Y  A  R  V  L  W  F  V  M  L  L  F  E  N  C  I  L  I  N  V  F  Y  F  I  I  I  Q  F  V  Q  V  V  *  Y  I  *  V  A  C  F  R  F  L  A  L  K  R  R  W  L  C  Y  S  S  K  Y  R  I  R  F  C  Y  L  E  S  I  E  A  S  F  Q  G  G  N  W  K  *  S  V  K  T  *  E  G  S  K  T  Y  Y  V  T  V  V  R  S  F  K  S  H  I  Y  F  C  L  M  Y  V  K  N  I  I  R  S  K  V  Y  M  N  L  N  N  Y  L  F  N  Q  I  C  C  I  S  I  F  I  R  S  T  L  K  L  P  N  A  C  N  T  F  N  L  Y  I  *  I  R  C  R  *  I  K  L  I   </second_frame>
            <third_frame>   S  I  F  Y  V  L  F  D  F  S  S  V  Q  I  S  F  L  S  K  Y  F  P  N  L  V  L  V  V  F  K  I  F  S  K  Y  L  V  P  *  A  Y  K  A  R :   G  C  I  C  *  L  K  L  R  Y  F  A  K  V  D  N  I  N  F  P  S  W  D  F  K  *  C  F  S  I  S  R  M  L  K  L  S  V  A  L  *  H  G  W  R  R  G  L  K  E  S  F  :  E  R  S  K  V  C  C  T  W  L  N  W  L  R  N  I  M  I  K  L  Q  R  S  R  L  G  T  L  R  S  H  M  N  R  L  L  R  L  E  Y  A  G  C  T  S  P  L  L  C  W :   L  G  R  *  N  S  *  Y  D  Y  S  C  *  R  T  I  L  H  S  N  V  A  *  T  D  *  I  C  W  L  D  Y  L  M  K  F  S  S  P  R  V  L  L  E  D  E  P  Y  F  H  L  W  Q  K  Y  R  V  K  N  A  E  Q  T  P  L  T  T  L  Y  V  E  N  L  L  Q  E  I  A  S  K  F  S  L  L  L  P  K  R  V  V  L  H   : I  S  F  K  L  S  K  N  Y  I  E  V  Q  C  I  I  *  S  R  G  F  L  I  D  I  R  Q  M  E  S  S  D  Y  A  S  V  S  H  Q  K  G  M  V  T  S  K  K  L  S  L  N  L  K  T  R  N  F  N  K  E  I  C  E  E  P  V  G  Q  D  H  *  *  V  L  I  E  Q  P  I  Y  S  H  S  *  L  Y  L  L  I  S  L  F  R  I  I  E  *  E  S  I  L  K  K  Y  L  *  G  Y  N  *  H  I  L  L  V  M  D  T  L  *  A  S  T  N  V  T  S  N  M  Y  V  T  K  D  Q  L  Y  M  *  W  *  V  P  N  L  T  N  Y  I  R  D  N  *  I  L  P  L  I  S  S  K  H  S  R  K  V  I  L  I  P  S  S  L  Y  W  H  L  *  Y  S  L  I  S  N  G  T  I  M  I  A  N  L  C  L  P  F  L  I  L  L  A  T  G  L  A  N  G  F  K  D  *  L  T  I  K  I  L  I  V  V  H  L  N  L  K  S  M  Q  E  C  Y  G  L  *  C  Y  F  L  K  I  V  S  *  L  M  C  F  T  L  L  L  S  S  L  F  K  L  C  D  I  F  R  W  H  A  F  D  F  *  P  S  K  E  D  G  C  V  I  L  Q  N  I  E  S  D  F  V  I  L  S  Q  L  K  Q  V  S  K  V  E  I  G  N  N  L  S  K  H  E  K  V  Q  K  L  I  M  *  Q  W  L  E  A  L  S  R  T  Y  I  F  V  *  C  M  *  K  I  *  L  D  P  K  C  I  *  T  *  T  I  I  C  L  I  K  Y  A  A  L  V  Y  L  S  D  Q  H  *  S  C  L  M  H  V  I  L  L  I  F  I  F  E  L  D  V  V  E  L  N  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78793" stop="78595"/>
                    <exon start="77642" stop="77593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWLDYLMKFSSPRVLLEDEPYFHLWQKYRVKNAEQTPLTTLYVENLLQEIASKFSLLLPKRVVLHISFKLSKNYIEVQCII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76720" stop="76511"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGSKTYYVTVVRSFKSHIYFCLMYVKNIIRSKVYMNLNNYLFNQICCISIFIRSTLKLPNACNTFNLYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80212" stop="80180"/>
                    <exon start="79097" stop="78949"/>
                    <exon start="78872" stop="78860"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGWRRGLKESFERSKVCCTWLNWLRNIMIKLQRSRLGTLRSHMNRLLRLEYAGCTSPLLCWLGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77927" e_stop="76482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="77927" e_stop="76482" e_length="1446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77927" stop="77222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77926" stop="77333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77701" stop="77085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77699" stop="77117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77376" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77362" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77284" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77269" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77028" stop="76551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76988" stop="76551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76733" stop="76482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGAGGCCACAGTTCATATTGTTATGAGTTAGGTCAATTCATTTCTTCACCGTCGTCTCCTCAAAACTCCTCCGCTCTTCTGCTATTTCTATTTCAATAATAGATGTAGATATTGAAAATTCAAGTTCATTTATTTTCCACCTCTCTCTCTCTGGTTTATGTTATGTATGCATTTATCAACTTTATTTTTTCAAGTTTACCTATTCTAATTTACGATAGCTATCTTTTTTTTTTCTTCTTTACTCATTAATAATTAGACATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAAACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCATGTAATACTTTTAATCTTTATATTTGAATTAGATGTCGTTGAATTAAATTAATTAG</gDNA_template>
            <first_frame> S  R  G  H  S  S  Y  C  Y  E  L  G  Q  F  I  S  S  P  S  S  P  Q  N  S  S  A  L  L  L  F  L  F  Q  *  *  M  *  I  L  K  I  Q  V  H  L  F  S  T  S  L  S  L  V  Y  V  M  Y  A  F  I  N  F  I  F  S  S  L  P  I  L  I  Y  D  S  Y  L  F  F  F  F  F  T  H  *  *  L  D  I  E  F  V  F  E  L  Q  L  A  L  N  S  V  R  T  T  L  R  Y  N  V  S  Y  K  V  G  V  S  *  L  T  Y  D  K  W  R  A  L  T  M  H  R  S  L  T  K  K  V  W  *  P  Q  K  N  F  P  *  I  *  R  R  E  T  S  I  R  K  F  V  R  S  L  L  A  K  T  I  N  R  F  *  L  N  N  Q  Y  I  V  I  L  D  Y  I  Y  *  F  P  Y  F  V  S  *  N  K  N  L  Y  *  K  N  I  C  E  V  I  I  S  I  Y  S  *  S  W  I  H  Y  K  L  P  Q  M  L  H  L  I  C  M  *  Q  R  I  N  C  T  C  N  G  K  S  Q  I  L  Q  I  I  S  E  T  I  K  F  C  P  *  L  A  V  N  T  R  E  K  L  F  *  Y  H  H  L  Y  I  G  I  C  D  I  A  *  Y  P  M  A  L  S  *  *  L  I  Y  V  F  L  S  S  Y  Y  L  P  L  D  S  L  M  G  S  K  I  N  *  Q  L  K  S  S  L  W  S  I  *  I  *  R  V  C  K  S  A  M  V  C  D  V  T  F  *  K  L  Y  L  D  *  C  V  L  L  Y  Y  Y  P  V  C  S  S  C  V  I  Y  L  G  G  M  L  S  I  F  S  P  Q  K  K  M  V  V  L  F  F  K  I  *  N  Q  I  L  L  S  *  V  N  *  S  K  F  P  R  W  K  L  E  I  I  C  Q  N  M  R  R  F  K  N  L  L  C  N  S  G  *  K  L  *  V  A  H  I  F  L  S  N  V  C  K  K  Y  N  *  I  Q  S  V  Y  E  L  K  Q  L  F  V  *  S  N  M  L  H  *  Y  I  Y  Q  I  N  I  K  V  A  *  C  M  *  Y  F  *  S  L  Y  L  N  *  M  S  L  N  *  I  N  * </first_frame>
            <second_frame>  Q  E  A  T  V  H  I  V  M  S  *  V  N  S  F  L  H  R  R  L  L  K  T  P  P  L  F  C  Y  F  Y  F  N  N  R  C  R  Y  *  K  F  K  F  I  Y  F  P  P  L  S  L  W  F  M  L  C  M  H  L  S  T  L  F  F  Q  V  Y  L  F  *  F  T  I  A  I  F  F  F  S  S  L  L  I  N  N  *  T  L  N  L  Y  L  N  C  S  *  L  *  T  Q  *  E  L  H  *  G  T  M  Y  H  I  K  S  G  F  L  D  *  H  T  T  N  G  E  L  *  L  C  I  G  L  S  P  K  R  Y  G  N  L  K  K  T  F  L  E  S  E  D  E  K  L  Q  *  G  N  L  *  G  A  C  W  P  R  P  L  I  G  F  D  *  T  T  N  I  *  S  F  L  I  I  S  I  N  F  L  I  S  Y  H  R  I  R  I  Y  T  K  K  I  F  V  R  L  *  L  A  Y  T  L  S  H  G  Y  T  I  S  F  H  K  C  Y  I  *  Y  V  C  D  K  G  S  I  V  H  V  M  V  S  P  K  S  Y  K  L  Y  Q  R  Q  L  N  F  A  L  N  *  Q  *  T  L  E  K  S  Y  F  D  T  I  I  F  I  L  A  F  V  I  *  L  N  I  Q  W  H  Y  H  D  S  *  F  M  S  S  F  P  H  I  T  C  H  W  T  R  *  W  V  Q  R  L  I  D  N  *  N  P  H  C  G  P  F  K  S  K  E  Y  A  R  V  L  W  F  V  M  L  L  F  E  N  C  I  L  I  N  V  F  Y  F  I  I  I  Q  F  V  Q  V  V  *  Y  I  *  V  A  C  F  R  F  L  A  L  K  R  R  W  L  C  Y  S  S  K  Y  R  I  R  F  C  Y  L  E  S  I  E  A  S  F  Q  G  G  N  W  K  *  S  V  K  T  *  E  G  S  K  T  Y  Y  V  T  V  V  R  S  F  K  S  H  I  Y  F  C  L  M  Y  V  K  N  I  I  R  S  K  V  Y  M  N  L  N  N  Y  L  F  N  Q  I  C  C  I  S  I  F  I  R  S  T  L  K  L  P  N  A  C  N  T  F  N  L  Y  I  *  I  R  C  R  *  I  K  L  I   </second_frame>
            <third_frame>   K  R  P  Q  F  I  L  L  *  V  R  S  I  H  F  F  T  V  V  S  S  K  L  L  R  S  S  A  I  S  I  S  I  I  D  V  D  I  E  N  S  S  S  F  I  F  H  L  S  L  S  G  L  C  Y  V  C  I  Y  Q  L  Y  F  F  K  F  T  Y  S  N  L  R  *  L  S  F  F  F  L  L  Y  S  L  I  I  R  H  *  I  C  I  *  T  A  V  S  F  K  L  S  K  N  Y  I  E  V  Q  C  I  I  *  S  R  G  F  L  I  D  I  R  Q  M  E  S  S  D  Y  A  S  V  S  H  Q  K  G  M  V  T  S  K  K  L  S  L  N  L  K  T  R  N  F  N  K  E  I  C  E  E  P  V  G  Q  D  H  *  *  V  L  I  E  Q  P  I  Y  S  H  S  *  L  Y  L  L  I  S  L  F  R  I  I  E  *  E  S  I  L  K  K  Y  L  *  G  Y  N  *  H  I  L  L  V  M  D  T  L  *  A  S  T  N  V  T  S  N  M  Y  V  T  K  D  Q  L  Y  M  *  W  *  V  P  N  L  T  N  Y  I  R  D  N  *  I  L  P  L  I  S  S  K  H  S  R  K  V  I  L  I  P  S  S  L  Y  W  H  L  *  Y  S  L  I  S  N  G  T  I  M  I  A  N  L  C  L  P  F  L  I  L  L  A  T  G  L  A  N  G  F  K  D  *  L  T  I  K  I  L  I  V  V  H  L  N  L  K  S  M  Q  E  C  Y  G  L  *  C  Y  F  L  K  I  V  S  *  L  M  C  F  T  L  L  L  S  S  L  F  K  L  C  D  I  F  R  W  H  A  F  D  F  *  P  S  K  E  D  G  C  V  I  L  Q  N  I  E  S  D  F  V  I  L  S  Q  L  K  Q  V  S  K  V  E  I  G  N  N  L  S  K  H  E  K  V  Q  K  L  I  M  *  Q  W  L  E  A  L  S  R  T  Y  I  F  V  *  C  M  *  K  I  *  L  D  P  K  C  I  *  T  *  T  I  I  C  L  I  K  Y  A  A  L  V  Y  L  S  D  Q  H  *  S  C  L  M  H  V  I  L  L  I  F  I  F  E  L  D  V  V  E  L  N  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76720" stop="76511"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGSKTYYVTVVRSFKSHIYFCLMYVKNIIRSKVYMNLNNYLFNQICCISIFIRSTLKLPNACNTFNLYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="79530" e_stop="78949"/>
            <exon e_start="78872" e_stop="78595"/>
            <exon e_start="77642" e_stop="76482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="0.998"/>
          <exon-intron don_prob="0.914" acc_prob="0.853" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79530" e_stop="78949" e_length="582"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="78948" i_stop="78873" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78872" e_stop="78595" e_length="278"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.853">
            <gDNA_intron_boundary i_start="78594" i_stop="77643" i_length="952"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="77642" e_stop="76482" e_length="1161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79530" stop="79082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79529" stop="79037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79067" stop="78949"/>
              <exon start="78872" stop="78595"/>
              <exon start="77642" stop="77207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77376" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77362" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77284" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77269" stop="76537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77028" stop="76551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76988" stop="76551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76733" stop="76482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTG : GCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACA : TTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAAACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCATGTAATACTTTTAATCTTTATATTTGAATTAGATGTCGTTGAATTAAATTAATTAG</gDNA_template>
            <first_frame> *  L  Q  W  L  G  I  S  F  A  K  K  K  L  F  I  M  G  I  *  N  S  H  T  S  V  G  I  L  R  G  H  *  S  H  Q  Y  Y  *  N  T  N  G  V  G  R  *  L  F  L  V  S  L  L  L  L  V  A  *  *  C  S  F  C  Y  P  F  I  R  N  P  L  N  A  I  K  M  K  C  Y  L  *  E  K  K  T  R  K  *  M  N  L  S  R  D  Q  T  E  K  E  I  G  R  G  F  *  *  S  T  E  D  S  R  S  C  A  I  W  S  L  T  F  F  F  W  W  L  T  H  F  S  N  V  V  V  V  Q  H  *  L  F  H  A  A  G  K  V  K  S  M  L  H  L  A  E  L  V  E  K  H  N  D  Q  I  A  T  F  E  T  W  D  T  E  K  P  Y  E  Q  A  V  K  I  G  V  R  W  L  Y  I  P  V  I  M  L  :  A  R  Q  I  K  F  L  I  *  L  F  L  L  K  D  H  I  A  F  K  R  C  M  N  G  L  N  L  L  V  R  L  S  H  E  I  F  L  S  S  C  S  L  G  R  *  A  L  L  S  L  V  A  E  I  S  C  *  K  C  *  A  D  P  F  N  Y  T  L  C  R  K  S  V  A  G  D  S  I  K  I  F  S  F  I  A  Q  K  S  R  F  A  H :   *  L  *  T  Q  *  E  L  H  *  G  T  M  Y  H  I  K  S  G  F  L  D  *  H  T  T  N  G  E  L  *  L  C  I  G  L  S  P  K  R  Y  G  N  L  K  K  T  F  L  E  S  E  D  E  K  L  Q  *  G  N  L  *  G  A  C  W  P  R  P  L  I  G  F  D  *  T  T  N  I  *  S  F  L  I  I  S  I  N  F  L  I  S  Y  H  R  I  R  I  Y  T  K  K  I  F  V  R  L  *  L  A  Y  T  L  S  H  G  Y  T  I  S  F  H  K  C  Y  I  *  Y  V  C  D  K  G  S  I  V  H  V  M  V  S  P  K  S  Y  K  L  Y  Q  R  Q  L  N  F  A  L  N  *  Q  *  T  L  E  K  S  Y  F  D  T  I  I  F  I  L  A  F  V  I  *  L  N  I  Q  W  H  Y  H  D  S  *  F  M  S  S  F  P  H  I  T  C  H  W  T  R  *  W  V  Q  R  L  I  D  N  *  N  P  H  C  G  P  F  K  S  K  E  Y  A  R  V  L  W  F  V  M  L  L  F  E  N  C  I  L  I  N  V  F  Y  F  I  I  I  Q  F  V  Q  V  V  *  Y  I  *  V  A  C  F  R  F  L  A  L  K  R  R  W  L  C  Y  S  S  K  Y  R  I  R  F  C  Y  L  E  S  I  E  A  S  F  Q  G  G  N  W  K  *  S  V  K  T  *  E  G  S  K  T  Y  Y  V  T  V  V  R  S  F  K  S  H  I  Y  F  C  L  M  Y  V  K  N  I  I  R  S  K  V  Y  M  N  L  N  N  Y  L  F  N  Q  I  C  C  I  S  I  F  I  R  S  T  L  K  L  P  N  A  C  N  T  F  N  L  Y  I  *  I  R  C  R  *  I  K  L  I   </first_frame>
            <second_frame>  S  C  N  G  W  E  L  V  L  Q  R  R  S  Y  L  *  W  V  F  R  I  L  T  L  L  L  G  Y  Y  G  V  I  S  R  I  N  I  I  E  I  Q  M  G  L  V  G  D  C  S  W  Y  P  Y  C  F  *  W  H  D  S  V  P  F  V  T  R  L  S  E  I  H  *  M  Q  *  R  *  S  A  I  S  R  K  R  R  R  G  S  E  *  T  S  L  E  I  K  Q  R  K  K  S  A  V  G  F  S  E  A  R  R  I  P  E  V  V  P  S  G  L  *  P  F  F  F  G  G  L  H  I  S  L  M  W  L  S  Y  N  T  N  C  S  M  L  Q  E  R  S  K  V  C  C  T  W  L  N  W  L  R  N  I  M  I  K  L  Q  R  S  R  L  G  T  L  R  S  H  M  N  R  L  L  R  L  E  Y  A  G  C  T  S  P  L  L  C  W :   L  G  R  *  N  S  *  Y  D  Y  S  C  *  R  T  I  L  H  S  N  V  A  *  T  D  *  I  C  W  L  D  Y  L  M  K  F  S  S  P  R  V  L  L  E  D  E  P  Y  F  H  L  W  Q  K  Y  R  V  K  N  A  E  Q  T  P  L  T  T  L  Y  V  E  N  L  L  Q  E  I  A  S  K  F  S  L  L  L  P  K  R  V  V  L  H   : I  S  F  K  L  S  K  N  Y  I  E  V  Q  C  I  I  *  S  R  G  F  L  I  D  I  R  Q  M  E  S  S  D  Y  A  S  V  S  H  Q  K  G  M  V  T  S  K  K  L  S  L  N  L  K  T  R  N  F  N  K  E  I  C  E  E  P  V  G  Q  D  H  *  *  V  L  I  E  Q  P  I  Y  S  H  S  *  L  Y  L  L  I  S  L  F  R  I  I  E  *  E  S  I  L  K  K  Y  L  *  G  Y  N  *  H  I  L  L  V  M  D  T  L  *  A  S  T  N  V  T  S  N  M  Y  V  T  K  D  Q  L  Y  M  *  W  *  V  P  N  L  T  N  Y  I  R  D  N  *  I  L  P  L  I  S  S  K  H  S  R  K  V  I  L  I  P  S  S  L  Y  W  H  L  *  Y  S  L  I  S  N  G  T  I  M  I  A  N  L  C  L  P  F  L  I  L  L  A  T  G  L  A  N  G  F  K  D  *  L  T  I  K  I  L  I  V  V  H  L  N  L  K  S  M  Q  E  C  Y  G  L  *  C  Y  F  L  K  I  V  S  *  L  M  C  F  T  L  L  L  S  S  L  F  K  L  C  D  I  F  R  W  H  A  F  D  F  *  P  S  K  E  D  G  C  V  I  L  Q  N  I  E  S  D  F  V  I  L  S  Q  L  K  Q  V  S  K  V  E  I  G  N  N  L  S  K  H  E  K  V  Q  K  L  I  M  *  Q  W  L  E  A  L  S  R  T  Y  I  F  V  *  C  M  *  K  I  *  L  D  P  K  C  I  *  T  *  T  I  I  C  L  I  K  Y  A  A  L  V  Y  L  S  D  Q  H  *  S  C  L  M  H  V  I  L  L  I  F  I  F  E  L  D  V  V  E  L  N  *  L  </second_frame>
            <third_frame>   V  A  M  V  G  N  *  F  C  K  E  E  V  I  Y  N  G  Y  L  E  F  S  H  F  C  W  D  I  T  G  S  L  V  A  S  I  L  L  K  Y  K  W  G  W  S  V  I  V  P  G  I  L  I  A  F  S  G  M  I  V  F  L  L  L  P  V  Y  P  K  S  I  E  C  N  K  D  E  V  L  S  L  G  K  E  D  E  E  V  N  E  P  L  S  R  S  N  R  E  R  N  R  P  W  V  L  V  K  H  G  G  F  P  K  L  C  H  L  V  F  D  L  F  F  L  V  A  Y  T  F  L  *  C  G  C  R  T  T  L  T  V  P  C  C  R  K  G  Q  K  Y  V  A  L  G  *  T  G  *  E  T  *  *  S  N  C  N  V  R  D  L  G  H  *  E  A  I  *  T  G  C  *  D  W  S  T  L  V  V  H  P  R  Y  Y  A   : G  *  A  D  K  I  L  D  M  T  I  P  A  E  G  P  Y  C  I  Q  T  L  H  E  R  I  E  F  V  G  *  I  I  S  *  N  F  P  L  L  V  F  S  W  K  M  S  P  T  F  T  C  G  R  N  I  V  L  K  M  L  S  R  P  L  *  L  H  S  M  *  K  I  C  C  R  R  *  H  Q  N  F  L  F  Y  C  P  K  E  S  F  C  T  :  L  A  L  N  S  V  R  T  T  L  R  Y  N  V  S  Y  K  V  G  V  S  *  L  T  Y  D  K  W  R  A  L  T  M  H  R  S  L  T  K  K  V  W  *  P  Q  K  N  F  P  *  I  *  R  R  E  T  S  I  R  K  F  V  R  S  L  L  A  K  T  I  N  R  F  *  L  N  N  Q  Y  I  V  I  L  D  Y  I  Y  *  F  P  Y  F  V  S  *  N  K  N  L  Y  *  K  N  I  C  E  V  I  I  S  I  Y  S  *  S  W  I  H  Y  K  L  P  Q  M  L  H  L  I  C  M  *  Q  R  I  N  C  T  C  N  G  K  S  Q  I  L  Q  I  I  S  E  T  I  K  F  C  P  *  L  A  V  N  T  R  E  K  L  F  *  Y  H  H  L  Y  I  G  I  C  D  I  A  *  Y  P  M  A  L  S  *  *  L  I  Y  V  F  L  S  S  Y  Y  L  P  L  D  S  L  M  G  S  K  I  N  *  Q  L  K  S  S  L  W  S  I  *  I  *  R  V  C  K  S  A  M  V  C  D  V  T  F  *  K  L  Y  L  D  *  C  V  L  L  Y  Y  Y  P  V  C  S  S  C  V  I  Y  L  G  G  M  L  S  I  F  S  P  Q  K  K  M  V  V  L  F  F  K  I  *  N  Q  I  L  L  S  *  V  N  *  S  K  F  P  R  W  K  L  E  I  I  C  Q  N  M  R  R  F  K  N  L  L  C  N  S  G  *  K  L  *  V  A  H  I  F  L  S  N  V  C  K  K  Y  N  *  I  Q  S  V  Y  E  L  K  Q  L  F  V  *  S  N  M  L  H  *  Y  I  Y  Q  I  N  I  K  V  A  *  C  M  *  Y  F  *  S  L  Y  L  N  *  M  S  L  N  *  I  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79507" stop="79136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCKEEVIYNGYLEFSHFCWDITGSLVASILLKYKWGWSVIVPGILIAFSGMIVFLLLPVYPKSIECNKDEVLSLGKEDEEVNEPLSRSNRERNRPWVLVKHGGFPKLCHLVFDLFFLVAYTFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78793" stop="78595"/>
                    <exon start="77642" stop="77593"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWLDYLMKFSSPRVLLEDEPYFHLWQKYRVKNAEQTPLTTLYVENLLQEIASKFSLLLPKRVVLHISFKLSKNYIEVQCII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76720" stop="76511"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGSKTYYVTVVRSFKSHIYFCLMYVKNIIRSKVYMNLNNYLFNQICCISIFIRSTLKLPNACNTFNLYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="79530" e_stop="78498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="79530" e_stop="78498" e_length="1033"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79530" stop="79082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79529" stop="79037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79091" stop="78532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79091" stop="78743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79090" stop="78498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTTTGGTATCGTATCTGAGTGAAAGAATATGTTTTTTTTCTTTTCAATTCTAGAAAAAATATTCCACAACAGTTGAAG</gDNA_template>
            <first_frame> *  L  Q  W  L  G  I  S  F  A  K  K  K  L  F  I  M  G  I  *  N  S  H  T  S  V  G  I  L  R  G  H  *  S  H  Q  Y  Y  *  N  T  N  G  V  G  R  *  L  F  L  V  S  L  L  L  L  V  A  *  *  C  S  F  C  Y  P  F  I  R  N  P  L  N  A  I  K  M  K  C  Y  L  *  E  K  K  T  R  K  *  M  N  L  S  R  D  Q  T  E  K  E  I  G  R  G  F  *  *  S  T  E  D  S  R  S  C  A  I  W  S  L  T  F  F  F  W  W  L  T  H  F  S  N  V  V  V  V  Q  H  *  L  F  H  A  A  G  K  V  K  S  M  L  H  L  A  E  L  V  E  K  H  N  D  Q  I  A  T  F  E  T  W  D  T  E  K  P  Y  E  Q  A  V  K  I  G  V  R  W  L  Y  I  P  V  I  M  L  V  S  N  K  F  N  *  K  E  S  L  S  S  I  I  S  S  P  *  K  K  I  I  S  T  G  *  A  D  K  I  L  D  M  T  I  P  A  E  G  P  Y  C  I  Q  T  L  H  E  R  I  E  F  V  G  *  I  I  S  *  N  F  P  L  L  V  F  S  W  K  M  S  P  T  F  T  C  G  R  N  I  V  L  K  M  L  S  R  P  L  *  L  H  S  M  *  K  I  C  C  R  R  *  H  Q  N  F  L  F  Y  C  P  K  E  S  F  C  T  V  S  Q  V  S  V  F  L  V  S  Y  L  S  E  R  I  C  F  F  S  F  Q  F  *  K  K  Y  S  T  T  V  E  </first_frame>
            <second_frame>  S  C  N  G  W  E  L  V  L  Q  R  R  S  Y  L  *  W  V  F  R  I  L  T  L  L  L  G  Y  Y  G  V  I  S  R  I  N  I  I  E  I  Q  M  G  L  V  G  D  C  S  W  Y  P  Y  C  F  *  W  H  D  S  V  P  F  V  T  R  L  S  E  I  H  *  M  Q  *  R  *  S  A  I  S  R  K  R  R  R  G  S  E  *  T  S  L  E  I  K  Q  R  K  K  S  A  V  G  F  S  E  A  R  R  I  P  E  V  V  P  S  G  L  *  P  F  F  F  G  G  L  H  I  S  L  M  W  L  S  Y  N  T  N  C  S  M  L  Q  E  R  S  K  V  C  C  T  W  L  N  W  L  R  N  I  M  I  K  L  Q  R  S  R  L  G  T  L  R  S  H  M  N  R  L  L  R  L  E  Y  A  G  C  T  S  P  L  L  C  W  *  V  I  N  S  T  R  K  K  V  Y  H  Q  L  F  L  L  P  E  K  K  L  F  L  Q  A  R  Q  I  K  F  L  I  *  L  F  L  L  K  D  H  I  A  F  K  R  C  M  N  G  L  N  L  L  V  R  L  S  H  E  I  F  L  S  S  C  S  L  G  R  *  A  L  L  S  L  V  A  E  I  S  C  *  K  C  *  A  D  P  F  N  Y  T  L  C  R  K  S  V  A  G  D  S  I  K  I  F  S  F  I  A  Q  K  S  R  F  A  Q  *  V  K  F  Q  F  F  W  Y  R  I  *  V  K  E  Y  V  F  F  L  F  N  S  R  K  N  I  P  Q  Q  L  K </second_frame>
            <third_frame>   V  A  M  V  G  N  *  F  C  K  E  E  V  I  Y  N  G  Y  L  E  F  S  H  F  C  W  D  I  T  G  S  L  V  A  S  I  L  L  K  Y  K  W  G  W  S  V  I  V  P  G  I  L  I  A  F  S  G  M  I  V  F  L  L  L  P  V  Y  P  K  S  I  E  C  N  K  D  E  V  L  S  L  G  K  E  D  E  E  V  N  E  P  L  S  R  S  N  R  E  R  N  R  P  W  V  L  V  K  H  G  G  F  P  K  L  C  H  L  V  F  D  L  F  F  L  V  A  Y  T  F  L  *  C  G  C  R  T  T  L  T  V  P  C  C  R  K  G  Q  K  Y  V  A  L  G  *  T  G  *  E  T  *  *  S  N  C  N  V  R  D  L  G  H  *  E  A  I  *  T  G  C  *  D  W  S  T  L  V  V  H  P  R  Y  Y  A  G  K  *  *  I  Q  L  E  R  K  S  I  I  N  Y  F  F  S  L  K  K  N  Y  F  Y  R  L  G  R  *  N  S  *  Y  D  Y  S  C  *  R  T  I  L  H  S  N  V  A  *  T  D  *  I  C  W  L  D  Y  L  M  K  F  S  S  P  R  V  L  L  E  D  E  P  Y  F  H  L  W  Q  K  Y  R  V  K  N  A  E  Q  T  P  L  T  T  L  Y  V  E  N  L  L  Q  E  I  A  S  K  F  S  L  L  L  P  K  R  V  V  L  H  S  K  S  S  F  S  F  F  G  I  V  S  E  *  K  N  M  F  F  F  F  S  I  L  E  K  I  F  H  N  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79507" stop="79136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCKEEVIYNGYLEFSHFCWDITGSLVASILLKYKWGWSVIVPGILIAFSGMIVFLLLPVYPKSIECNKDEVLSLGKEDEEVNEPLSRSNRERNRPWVLVKHGGFPKLCHLVFDLFFLVAYTFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78793" stop="78554"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWLDYLMKFSSPRVLLEDEPYFHLWQKYRVKNAEQTPLTTLYVENLLQEIASKFSLLLPKRVVLHSKSSFSFFGIVSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="80572" e_stop="80458"/>
            <exon e_start="80336" e_stop="80180"/>
            <exon e_start="79097" e_stop="78498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="0.983"/>
          <exon-intron don_prob="0.409" acc_prob="0.993" e_score="0.943"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="80572" e_stop="80458" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="80336" e_stop="80180" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.409" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="79097" e_stop="78498" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80572" stop="80458"/>
              <exon start="80336" stop="80180"/>
              <exon start="79097" stop="78561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80572" stop="80458"/>
              <exon start="80336" stop="80180"/>
              <exon start="79097" stop="78650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79091" stop="78532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79091" stop="78743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79090" stop="78498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAG : AGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTT : GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTTTGGTATCGTATCTGAGTGAAAGAATATGTTTTTTTTCTTTTCAATTCTAGAAAAAATATTCCACAACAGTTGAAG</gDNA_template>
            <first_frame> S  L  I  F  H  R  Y  K  L  V  F  S  L  N  I  F  L  I  L  F  W  *  C  S  K  F  S  V  S  T  L  C  H  R  H  T  K  R   : E  V  V  S  A  S  S  S  *  D  I  S  P  K  *  I  T  S  I  F  R  V  G  I  S  N  N  A  F  Q  S  Q  E  C  *  N  Y  R  L  P  Y  D  M  V  G  G  V  V  *  K  R  V  L :   K  G  Q  K  Y  V  A  L  G  *  T  G  *  E  T  *  *  S  N  C  N  V  R  D  L  G  H  *  E  A  I  *  T  G  C  *  D  W  S  T  L  V  V  H  P  R  Y  Y  A  G  K  *  *  I  Q  L  E  R  K  S  I  I  N  Y  F  F  S  L  K  K  N  Y  F  Y  R  L  G  R  *  N  S  *  Y  D  Y  S  C  *  R  T  I  L  H  S  N  V  A  *  T  D  *  I  C  W  L  D  Y  L  M  K  F  S  S  P  R  V  L  L  E  D  E  P  Y  F  H  L  W  Q  K  Y  R  V  K  N  A  E  Q  T  P  L  T  T  L  Y  V  E  N  L  L  Q  E  I  A  S  K  F  S  L  L  L  P  K  R  V  V  L  H  S  K  S  S  F  S  F  F  G  I  V  S  E  *  K  N  M  F  F  F  F  S  I  L  E  K  I  F  H  N  S  *   </first_frame>
            <second_frame>  L  *  F  F  I  G  T  N  *  F  S  L  *  I  F  S  *  S  C  F  G  S  V  Q  N  F  Q  *  V  P  C  A  I  G  I  Q  S  E  :  R  L  Y  L  L  A  Q  A  K  I  F  R  Q  S  R  *  H  Q  F  S  E  L  G  F  Q  I  M  L  F  N  L  K  N  V  K  I  I  G  C  L  M  T  W  L  E  A  W  S  E  R  E  F   : *  K  V  K  S  M  L  H  L  A  E  L  V  E  K  H  N  D  Q  I  A  T  F  E  T  W  D  T  E  K  P  Y  E  Q  A  V  K  I  G  V  R  W  L  Y  I  P  V  I  M  L  V  S  N  K  F  N  *  K  E  S  L  S  S  I  I  S  S  P  *  K  K  I  I  S  T  G  *  A  D  K  I  L  D  M  T  I  P  A  E  G  P  Y  C  I  Q  T  L  H  E  R  I  E  F  V  G  *  I  I  S  *  N  F  P  L  L  V  F  S  W  K  M  S  P  T  F  T  C  G  R  N  I  V  L  K  M  L  S  R  P  L  *  L  H  S  M  *  K  I  C  C  R  R  *  H  Q  N  F  L  F  Y  C  P  K  E  S  F  C  T  V  S  Q  V  S  V  F  L  V  S  Y  L  S  E  R  I  C  F  F  S  F  Q  F  *  K  K  Y  S  T  T  V  E  </second_frame>
            <third_frame>   F  D  F  S  S  V  Q  I  S  F  L  S  K  Y  F  P  N  L  V  L  V  V  F  K  I  F  S  K  Y  L  V  P  *  A  Y  K  A  R :   G  C  I  C  *  L  K  L  R  Y  F  A  K  V  D  N  I  N  F  P  S  W  D  F  K  *  C  F  S  I  S  R  M  L  K  L  S  V  A  L  *  H  G  W  R  R  G  L  K  E  S  F  :  E  R  S  K  V  C  C  T  W  L  N  W  L  R  N  I  M  I  K  L  Q  R  S  R  L  G  T  L  R  S  H  M  N  R  L  L  R  L  E  Y  A  G  C  T  S  P  L  L  C  W  *  V  I  N  S  T  R  K  K  V  Y  H  Q  L  F  L  L  P  E  K  K  L  F  L  Q  A  R  Q  I  K  F  L  I  *  L  F  L  L  K  D  H  I  A  F  K  R  C  M  N  G  L  N  L  L  V  R  L  S  H  E  I  F  L  S  S  C  S  L  G  R  *  A  L  L  S  L  V  A  E  I  S  C  *  K  C  *  A  D  P  F  N  Y  T  L  C  R  K  S  V  A  G  D  S  I  K  I  F  S  F  I  A  Q  K  S  R  F  A  Q  *  V  K  F  Q  F  F  W  Y  R  I  *  V  K  E  Y  V  F  F  L  F  N  S  R  K  N  I  P  Q  Q  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78793" stop="78554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWLDYLMKFSSPRVLLEDEPYFHLWQKYRVKNAEQTPLTTLYVENLLQEIASKFSLLLPKRVVLHSKSSFSFFGIVSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="83809" PGL_stop="81172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83809" e_stop="83760"/>
            <exon e_start="81725" e_stop="81172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.137" acc_prob="0.956" e_score="0.880"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.880">
            <gDNA_exon_boundary e_start="83809" e_stop="83760" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.137" acc_prob="0.956">
            <gDNA_intron_boundary i_start="83759" i_stop="81726" i_length="2034"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="81725" e_stop="81172" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83809" stop="83760"/>
              <exon start="81725" stop="81172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGGCATATATATGTATTTTTTTTAAATTCTCTTCATCTTCATTTTAG : GTAATTGCCGGTCAAAATCATGTTTACAACGATGATGTTCTTTGATATTTAATATTACAAGTAAATCTTGAAGACTATTATTAAATTATCCTACTCTACTTAAATAGTAGGCCTTTTGTTTCAAGTAGCCTGCACTAAATGTTAATATCCATTGATGATATGTTATTGAAAATACCACGGGCTTAATATGGTGCTTATAAATTAATTCAGATAAAGGAGATAATAGTGTGAAGGATTTCTAGCAGGAAATGAGGTTGCTTGTTTCACATGGTTAGTAGCCTTTTAATCTGTTTAACATGATAAGGTAATCTACAATAAAATGTTCCAACTTATGCAATAGGAGTTGCATGTACAGAGAAGATCAGGAAGGGAAACAATCCACTGTCTTCTCACTTTTAGAAACTATTGCTCTGTCGAAATACTGATAATTATATGAAGTTATAGCTTGAAACTAATTGAAGTTTCTATGAAATATATATTATACAGGGATTGCTGAAACAAAAAAATATGTTAAGAAATTTGAGTTGAATATCTTGTATTATATGAAGATCAAA</gDNA_template>
            <first_frame> Y  W  H  I  Y  V  F  F  L  N  S  L  H  L  H  F  R :   *  L  P  V  K  I  M  F  T  T  M  M  F  F  D  I  *  Y  Y  K  *  I  L  K  T  I  I  K  L  S  Y  S  T  *  I  V  G  L  L  F  Q  V  A  C  T  K  C  *  Y  P  L  M  I  C  Y  *  K  Y  H  G  L  N  M  V  L  I  N  *  F  R  *  R  R  *  *  C  E  G  F  L  A  G  N  E  V  A  C  F  T  W  L  V  A  F  *  S  V  *  H  D  K  V  I  Y  N  K  M  F  Q  L  M  Q  *  E  L  H  V  Q  R  R  S  G  R  E  T  I  H  C  L  L  T  F  R  N  Y  C  S  V  E  I  L  I  I  I  *  S  Y  S  L  K  L  I  E  V  S  M  K  Y  I  L  Y  R  D  C  *  N  K  K  I  C  *  E  I  *  V  E  Y  L  V  L  Y  E  D  Q  </first_frame>
            <second_frame>  I  G  I  Y  M  Y  F  F  *  I  L  F  I  F  I  L   : G  N  C  R  S  K  S  C  L  Q  R  *  C  S  L  I  F  N  I  T  S  K  S  *  R  L  L  L  N  Y  P  T  L  L  K  *  *  A  F  C  F  K  *  P  A  L  N  V  N  I  H  *  *  Y  V  I  E  N  T  T  G  L  I  W  C  L  *  I  N  S  D  K  G  D  N  S  V  K  D  F  *  Q  E  M  R  L  L  V  S  H  G  *  *  P  F  N  L  F  N  M  I  R  *  S  T  I  K  C  S  N  L  C  N  R  S  C  M  Y  R  E  D  Q  E  G  K  Q  S  T  V  F  S  L  L  E  T  I  A  L  S  K  Y  *  *  L  Y  E  V  I  A  *  N  *  L  K  F  L  *  N  I  Y  Y  T  G  I  A  E  T  K  K  Y  V  K  K  F  E  L  N  I  L  Y  Y  M  K  I  K </second_frame>
            <third_frame>   L  A  Y  I  C  I  F  F  K  F  S  S  S  S  F  *  :  V  I  A  G  Q  N  H  V  Y  N  D  D  V  L  *  Y  L  I  L  Q  V  N  L  E  D  Y  Y  *  I  I  L  L  Y  L  N  S  R  P  F  V  S  S  S  L  H  *  M  L  I  S  I  D  D  M  L  L  K  I  P  R  A  *  Y  G  A  Y  K  L  I  Q  I  K  E  I  I  V  *  R  I  S  S  R  K  *  G  C  L  F  H  M  V  S  S  L  L  I  C  L  T  *  *  G  N  L  Q  *  N  V  P  T  Y  A  I  G  V  A  C  T  E  K  I  R  K  G  N  N  P  L  S  S  H  F  *  K  L  L  L  C  R  N  T  D  N  Y  M  K  L  *  L  E  T  N  *  S  F  Y  E  I  Y  I  I  Q  G  L  L  K  Q  K  N  M  L  R  N  L  S  *  I  S  C  I  I  *  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0097J14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83804" e_stop="83760"/>
            <exon e_start="83340" e_stop="82594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.137" acc_prob="0.991" e_score="0.956"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="83804" e_stop="83760" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.137" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83759" i_stop="83341" i_length="419"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="83340" e_stop="82594" e_length="747"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83804" stop="83760"/>
              <exon start="83340" stop="82594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATATATATGTATTTTTTTTAAATTCTCTTCATCTTCATTTTAG : GTTAACTGTTTGGATGATTGTAGTGTTGATATCTTTGATGATCAATCGGTGATTACATTATTAAAGGTAATATTTGCATATCTTTTTTCTCTTGATATATCCCCATGCTTTTCAGTTTTTATCGTGCTTTTAATTTTCTTTTGTTTCATTCAGAGGAGATCCATGATTACCTCATCGTGTTTCTTAGAATATCAAAAGATGCCTTGTTAGATGGTTGGATTTGCACAACATTCAATTGGCTTAGAATAATAGAATGTAATATATAAATAAGATGCTTGTGTTGCCTTCTTTCATTACGCTCTATGATTTTTTAAATGCGGTCATGCGAATTCAACTTAAAATAACGATTTCGCTTCAGCATCTTCGATATCAAATCATATCTTAGAATCTAGGTACAAGTATATTTCATTGAGGTATGTCACATATGATGCTTACTTGGATCAGGTGCAAGGCCCCGAGAAATGGTATCATATAATTTCAACGGAGTGTTAAATATGTTATTTTTTATACTTTTATTATTACTAGGCTACATCGACTGTCTTTTCATTTTTCTTCTCTTAAGTTATGTTTTGGAACATTGTAAAATGTTTGATACCTCACTAATGAATATCTTTTTTCTTTTAATTGGTAGTAATTTCAATGCATTTGCTAATGATTTTTTTTTTTAAAAAAAAAGATTCAGTTAAGAGTTTTGTATAATGTAGATCTTTATATGGGATAGTCTTATTCATGCTATGAGCTTACTTC</gDNA_template>
            <first_frame> A  Y  I  C  I  F  F  K  F  S  S  S  S  F  *  :  V  N  C  L  D  D  C  S  V  D  I  F  D  D  Q  S  V  I  T  L  L  K  V  I  F  A  Y  L  F  S  L  D  I  S  P  C  F  S  V  F  I  V  L  L  I  F  F  C  F  I  Q  R  R  S  M  I  T  S  S  C  F  L  E  Y  Q  K  M  P  C  *  M  V  G  F  A  Q  H  S  I  G  L  E  *  *  N  V  I  Y  K  *  D  A  C  V  A  F  F  H  Y  A  L  *  F  F  K  C  G  H  A  N  S  T  *  N  N  D  F  A  S  A  S  S  I  S  N  H  I  L  E  S  R  Y  K  Y  I  S  L  R  Y  V  T  Y  D  A  Y  L  D  Q  V  Q  G  P  E  K  W  Y  H  I  I  S  T  E  C  *  I  C  Y  F  L  Y  F  Y  Y  Y  *  A  T  S  T  V  F  S  F  F  F  S  *  V  M  F  W  N  I  V  K  C  L  I  P  H  *  *  I  S  F  F  F  *  L  V  V  I  S  M  H  L  L  M  I  F  F  F  K  K  K  D  S  V  K  S  F  V  *  C  R  S  L  Y  G  I  V  L  F  M  L  *  A  Y  F </first_frame>
            <second_frame>  H  I  Y  V  F  F  L  N  S  L  H  L  H  F  R :   L  T  V  W  M  I  V  V  L  I  S  L  M  I  N  R  *  L  H  Y  *  R  *  Y  L  H  I  F  F  L  L  I  Y  P  H  A  F  Q  F  L  S  C  F  *  F  S  F  V  S  F  R  G  D  P  *  L  P  H  R  V  S  *  N  I  K  R  C  L  V  R  W  L  D  L  H  N  I  Q  L  A  *  N  N  R  M  *  Y  I  N  K  M  L  V  L  P  S  F  I  T  L  Y  D  F  L  N  A  V  M  R  I  Q  L  K  I  T  I  S  L  Q  H  L  R  Y  Q  I  I  S  *  N  L  G  T  S  I  F  H  *  G  M  S  H  M  M  L  T  W  I  R  C  K  A  P  R  N  G  I  I  *  F  Q  R  S  V  K  Y  V  I  F  Y  T  F  I  I  T  R  L  H  R  L  S  F  H  F  S  S  L  K  L  C  F  G  T  L  *  N  V  *  Y  L  T  N  E  Y  L  F  S  F  N  W  *  *  F  Q  C  I  C  *  *  F  F  F  L  K  K  K  I  Q  L  R  V  L  Y  N  V  D  L  Y  M  G  *  S  Y  S  C  Y  E  L  T   </second_frame>
            <third_frame>   I  Y  M  Y  F  F  *  I  L  F  I  F  I  L   : G  *  L  F  G  *  L  *  C  *  Y  L  *  *  S  I  G  D  Y  I  I  K  G  N  I  C  I  S  F  F  S  *  Y  I  P  M  L  F  S  F  Y  R  A  F  N  F  L  L  F  H  S  E  E  I  H  D  Y  L  I  V  F  L  R  I  S  K  D  A  L  L  D  G  W  I  C  T  T  F  N  W  L  R  I  I  E  C  N  I  *  I  R  C  L  C  C  L  L  S  L  R  S  M  I  F  *  M  R  S  C  E  F  N  L  K  *  R  F  R  F  S  I  F  D  I  K  S  Y  L  R  I  *  V  Q  V  Y  F  I  E  V  C  H  I  *  C  L  L  G  S  G  A  R  P  R  E  M  V  S  Y  N  F  N  G  V  L  N  M  L  F  F  I  L  L  L  L  L  G  Y  I  D  C  L  F  I  F  L  L  L  S  Y  V  L  E  H  C  K  M  F  D  T  S  L  M  N  I  F  F  L  L  I  G  S  N  F  N  A  F  A  N  D  F  F  F  *  K  K  R  F  S  *  E  F  C  I  M  *  I  F  I  W  D  S  L  I  H  A  M  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82912" stop="82673"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLGSGARPREMVSYNFNGVLNMLFFILLLLLGYIDCLFIFLLLSYVLEHCKMFDTSLMNIFFLLIGSNFNAFANDFFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83340" stop="83131"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNCLDDCSVDIFDDQSVITLLKVIFAYLFSLDISPCFSVFIVLLIFFCFIQRRSMITSSCFLEYQKMPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="84297" PGL_stop="87837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84297" e_stop="84421"/>
            <exon e_start="85352" e_stop="85594"/>
            <exon e_start="86709" e_stop="86840"/>
            <exon e_start="86956" e_stop="87072"/>
            <exon e_start="87143" e_stop="87837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84297" e_stop="84421" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.943">
            <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85352" e_stop="85594" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86709" e_stop="86840" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86956" e_stop="87072" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87143" e_stop="87837" e_length="695"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84297" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84298" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84298" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84298" stop="84421"/>
              <exon start="85352" stop="85512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84302" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="86967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84302" stop="84421"/>
              <exon start="85352" stop="85448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84305" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84305" stop="84421"/>
              <exon start="85352" stop="85587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84312" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84314" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84322" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84326" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84326" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="86996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84335" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84335" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84347" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84347" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84361" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84361" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="86974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84367" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84378" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85399" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85424" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85544" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85545" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85565" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86760" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86804" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87013" stop="87072"/>
              <exon start="87143" stop="87823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261348" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87037" stop="87072"/>
              <exon start="87143" stop="87837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87037" stop="87072"/>
              <exon start="87143" stop="87823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261056" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87444" stop="87810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87464" stop="87823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258941" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87474" stop="87810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG : ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG : ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG : TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG : GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTAGTAACTTGATGAGG</gDNA_template>
            <first_frame> L  K  A  Q  T  P  L  S  P  I  I  A  L  C  *  S  T  P  W  S  S  P  A  V  H  P  G  R  F  L  R  L  I  L  H  L  Y  C  V  Y  P  R :   W  H  H  F  K  K  A  C  K  G  S  R  S  S  K  R  S  A  K  L  L  L  V  W  L  P  E  Q  D  L  P  R  E  L  L  Q  G  Q  L  M  Q  N  L  L  H  L  Q  S  N  F  Q  M  T  R  K  G  S  S  I  *  I  L  *  G  K  G  L  L  G  L  R  *  N  V  S  *  T  C  F  W  R :   Q  G  K  L  S  H  Q  N  R  S  M  K  H  V  M  L  I  *  L  A  I  N  L  C  L  T  V  *  G  K  T  S  K  Y  I  M  M  A  I  A  F  L  I  S :   R  N  M  L  *  K  I  K  S  N  Y  L  S  *  *  E  N  S  L  R  V  L  L  L  S  T  S  R  M  H  T  R  L  S  W  R  T  C  R :   L  S  K  V  L  V  K  Y  G  C  C  Q  I  L  T  P  R  K  T  S  P  S  Q  M  I  H  E  Y  P  L  R  L  M  M  I  *  N  S  Y  S  E  V  L  N  Y  H  V  T  C  L  I  S  K  G  I  C  R  R  T  G  *  N  L  L  P  T  L  Q  R  E  G  Q  W  H  K  S  M  A  L  L  P  S  P  K  P  K  R  R  S  M  R  L  A  R  G  L  S  L  Q  M  L  I  F  Q  N  S  S  N  F  R  Y  L  L  V  H  K  L  L  P  N  R  K  Q  A  L  E  F  L  L  S  F  P  D  S  V  V  *  *  L  N  L  E  Y  L  M  L  Y  H  T  S  S  M  K  S  S  L  R  M  A  K  A  L  V  F  G  S  Y  S  Q  G  C  V  L  F  L  L  T  W  *  T  W  G  G  N  M  I  L  I  I  C  D  F  I  T  D  L  G  F  W  T  I  K  L  L  C  S  *  R  S  T  S  F  C  I  I  L  F  N  I  N  I  Y  Y  D  *  N  *  *  L  D  E  </first_frame>
            <second_frame>  *  R  P  K  P  P  S  P  R  S  L  L  S  V  N  R  R  R  G  R  V  P  P  S  I  P  D  V  F  S  G  *  F  F  I  S  I  V  S  I  Q   : D  G  I  T  S  R  K  L  A  K  V  Q  E  A  A  R  E  V  P  S  Y  Y  *  Y  G  C  Q  S  R  T  F  Q  G  S  S  S  K  A  S  *  C  K  T  S  C  T  C  S  Q  I  F  K  *  H  G  K  A  P  A  Y  K  Y  Y  K  E  R  A  C  W  V  S  D  E  T  C  H  R  L  A  S  G   : D  K  A  S  F  H  T  R  T  D  Q  *  S  M  L  C  *  F  N  W  Q  *  T  C  V  *  Q  F  E  E  K  R  Q  S  I  L  *  W  Q  S  L  F  L  *   : V  E  T  C  S  E  K  *  R  A  T  T  Y  L  D  K  K  I  P  *  G  Y  C  C  Y  R  P  Q  G  C  I  P  D  C  H  G  G  P  A   : G  S  Q  R  C  W  S  N  M  A  A  V  K  F  *  L  P  G  R  H  R  L  P  K  *  S  T  S  T  H  *  G  *  *  *  F  E  T  A  I  Q  R  Y  *  I  T  T  *  H  A  *  Y  R  K  G  S  A  E  E  R  D  E  T  C  Y  Q  H  C  K  E  K  G  N  G  T  S  P  W  H  C  S  Q  A  Q  N  Q  K  E  E  A  *  D  *  Q  E  D  *  A  Y  K  C  S  S  S  R  T  L  Q  T  L  D  I  Y  W  F  I  N  F  S  R  I  E  N  K  H  W  S  S  S  S  P  F  Q  I  L  L  S  S  D  *  T  L  N  T  *  C  F  T  I  R  L  A  *  R  V  L  Y  E  W  L  K  P  W  C  L  V  P  I  H  K  V  V  F  C  F  Y  *  P  G  K  L  G  V  G  I  *  Y  *  *  F  V  I  L  L  L  T  W  V  F  G  P  S  N  C  Y  V  H  E  D  Q  H  H  F  V  S  Y  C  L  I  S  I  Y  I  T  I  K  I  S  N  L  M  R </second_frame>
            <third_frame>   K  G  P  N  P  P  L  P  D  H  C  S  L  L  I  D  A  V  V  E  S  R  R  P  S  R  T  F  S  P  A  N  S  S  S  L  L  C  L  S  K  :  M  A  S  L  Q  E  S  L  Q  R  F  K  K  Q  Q  E  K  C  Q  A  I  T  S  M  A  A  R  A  G  P  S  K  G  A  P  P  R  P  A  N  A  K  P  P  A  P  A  V  K  F  S  N  D  T  E  R  L  Q  H  I  N  T  I  R  K  G  P  V  G  S  Q  M  K  R  V  I  D  L  L  L  E  :  T  R  Q  A  F  T  P  E  Q  I  N  E  A  C  Y  V  D  L  I  G  N  K  P  V  F  D  S  L  R  K  N  V  K  V  Y  Y  D  G  N  R  F  S  Y  K  :  S  K  H  A  L  K  N  K  E  Q  L  L  I  L  I  R  K  F  P  E  G  I  A  V  I  D  L  K  D  A  Y  P  T  V  M  E  D  L  Q  :  A  L  K  G  A  G  Q  I  W  L  L  S  N  F  D  S  Q  E  D  I  A  F  P  N  D  P  R  V  P  I  K  V  D  D  D  L  K  Q  L  F  R  G  I  E  L  P  R  D  M  L  D  I  E  R  D  L  Q  K  N  G  M  K  P  A  T  N  T  A  K  R  R  A  M  A  Q  V  H  G  I  A  P  K  P  K  T  K  K  K  K  H  E  I  S  K  R  T  K  L  T  N  A  H  L  P  E  L  F  K  L  *  I  S  I  G  S  *  T  S  P  E  *  K  T  S  T  G  V  P  P  L  L  S  R  F  C  C  L  V  T  E  P  *  I  P  N  A  L  P  Y  V  *  H  E  E  F  F  T  N  G  *  S  L  G  V  W  F  L  F  T  R  L  C  F  V  F  T  D  L  V  N  L  G  W  E  Y  D  T  N  N  L  *  F  Y  Y  *  L  G  F  L  D  H  Q  I  V  M  F  M  K  I  N  I  I  L  Y  H  I  V  *  Y  Q  Y  I  L  R  L  K  L  V  T  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84299" stop="84421"/>
                    <exon start="85352" stop="85594"/>
                    <exon start="86709" stop="86840"/>
                    <exon start="86956" stop="87072"/>
                    <exon start="87143" stop="87472"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGPNPPLPDHCSLLIDAVVESRRPSRTFSPANSSSLLCLSKMASLQESLQRFKKQQEKCQAITSMAARAGPSKGAPPRPANAKPPAPAVKFSNDTERLQHINTIRKGPVGSQMKRVIDLLLETRQAFTPEQINEACYVDLIGNKPVFDSLRKNVKVYYDGNRFSYKSKHALKNKEQLLILIRKFPEGIAVIDLKDAYPTVMEDLQALKGAGQIWLLSNFDSQEDIAFPNDPRVPIKVDDDLKQLFRGIELPRDMLDIERDLQKNGMKPATNTAKRRAMAQVHGIAPKPKTKKKKHEISKRTKLTNAHLPELFKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84319" e_stop="84720"/>
            <exon e_start="85352" e_stop="85594"/>
            <exon e_start="86709" e_stop="86840"/>
            <exon e_start="86956" e_stop="87072"/>
            <exon e_start="87143" e_stop="87837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.943" e_score="0.861"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.861">
            <gDNA_exon_boundary e_start="84319" e_stop="84720" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.943">
            <gDNA_intron_boundary i_start="84721" i_stop="85351" i_length="631"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="85352" e_stop="85594" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86709" e_stop="86840" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86956" e_stop="87072" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87143" e_stop="87837" e_length="695"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84319" stop="84720"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84319" stop="84720"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="86966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85399" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85424" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85543" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85544" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85545" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85565" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86760" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86804" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87013" stop="87072"/>
              <exon start="87143" stop="87823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261348" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87037" stop="87072"/>
              <exon start="87143" stop="87837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87037" stop="87072"/>
              <exon start="87143" stop="87823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261056" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87444" stop="87810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87464" stop="87823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258941" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87474" stop="87810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACG : ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG : ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG : TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG : GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTAGTAACTTGATGAGG</gDNA_template>
            <first_frame> P  R  S  L  L  S  V  N  R  R  R  G  R  V  P  P  S  I  P  D  V  F  S  G  *  F  F  I  S  I  V  S  I  Q  G  Q  D  H  I  F  L  C  L  L  S  F  F  W  K  L  I  S  C  A  S  Y  C  D  W  A  *  I  E  R  I  G  Y  R  G  F  I  *  G  I  Q  T  S  F  G  F  R  I  Q  T  S  F  G  F  R  F  S  C  L  I  E  R  L  N  H  C  F  D  W  A  *  I  E  K  G  N  R  S  R  I  L  L  I  R  R  V  H  F  F  W  K  R  N  T  V  Y  M  I  *  T  :  M  A  S  L  Q  E  S  L  Q  R  F  K  K  Q  Q  E  K  C  Q  A  I  T  S  M  A  A  R  A  G  P  S  K  G  A  P  P  R  P  A  N  A  K  P  P  A  P  A  V  K  F  S  N  D  T  E  R  L  Q  H  I  N  T  I  R  K  G  P  V  G  S  Q  M  K  R  V  I  D  L  L  L  E  :  T  R  Q  A  F  T  P  E  Q  I  N  E  A  C  Y  V  D  L  I  G  N  K  P  V  F  D  S  L  R  K  N  V  K  V  Y  Y  D  G  N  R  F  S  Y  K  :  S  K  H  A  L  K  N  K  E  Q  L  L  I  L  I  R  K  F  P  E  G  I  A  V  I  D  L  K  D  A  Y  P  T  V  M  E  D  L  Q  :  A  L  K  G  A  G  Q  I  W  L  L  S  N  F  D  S  Q  E  D  I  A  F  P  N  D  P  R  V  P  I  K  V  D  D  D  L  K  Q  L  F  R  G  I  E  L  P  R  D  M  L  D  I  E  R  D  L  Q  K  N  G  M  K  P  A  T  N  T  A  K  R  R  A  M  A  Q  V  H  G  I  A  P  K  P  K  T  K  K  K  K  H  E  I  S  K  R  T  K  L  T  N  A  H  L  P  E  L  F  K  L  *  I  S  I  G  S  *  T  S  P  E  *  K  T  S  T  G  V  P  P  L  L  S  R  F  C  C  L  V  T  E  P  *  I  P  N  A  L  P  Y  V  *  H  E  E  F  F  T  N  G  *  S  L  G  V  W  F  L  F  T  R  L  C  F  V  F  T  D  L  V  N  L  G  W  E  Y  D  T  N  N  L  *  F  Y  Y  *  L  G  F  L  D  H  Q  I  V  M  F  M  K  I  N  I  I  L  Y  H  I  V  *  Y  Q  Y  I  L  R  L  K  L  V  T  *  *   </first_frame>
            <second_frame>  P  D  H  C  S  L  L  I  D  A  V  V  E  S  R  R  P  S  R  T  F  S  P  A  N  S  S  S  L  L  C  L  S  K  V  K  T  I  S  F  C  V  Y  C  L  F  F  G  S  L  F  L  V  L  L  I  A  I  G  P  E  *  S  E  L  V  T  E  D  S  Y  R  E  S  K  L  V  L  D  S  E  S  K  L  V  L  D  S  D  L  V  A  *  S  N  D  *  I  I  V  S  I  G  H  E  *  K  K  E  I  G  Q  E  Y  Y  *  F  V  E  F  I  F  S  G  N  E  I  L  Y  I  *  F  K  R :   W  H  H  F  K  K  A  C  K  G  S  R  S  S  K  R  S  A  K  L  L  L  V  W  L  P  E  Q  D  L  P  R  E  L  L  Q  G  Q  L  M  Q  N  L  L  H  L  Q  S  N  F  Q  M  T  R  K  G  S  S  I  *  I  L  *  G  K  G  L  L  G  L  R  *  N  V  S  *  T  C  F  W  R :   Q  G  K  L  S  H  Q  N  R  S  M  K  H  V  M  L  I  *  L  A  I  N  L  C  L  T  V  *  G  K  T  S  K  Y  I  M  M  A  I  A  F  L  I  S :   R  N  M  L  *  K  I  K  S  N  Y  L  S  *  *  E  N  S  L  R  V  L  L  L  S  T  S  R  M  H  T  R  L  S  W  R  T  C  R :   L  S  K  V  L  V  K  Y  G  C  C  Q  I  L  T  P  R  K  T  S  P  S  Q  M  I  H  E  Y  P  L  R  L  M  M  I  *  N  S  Y  S  E  V  L  N  Y  H  V  T  C  L  I  S  K  G  I  C  R  R  T  G  *  N  L  L  P  T  L  Q  R  E  G  Q  W  H  K  S  M  A  L  L  P  S  P  K  P  K  R  R  S  M  R  L  A  R  G  L  S  L  Q  M  L  I  F  Q  N  S  S  N  F  R  Y  L  L  V  H  K  L  L  P  N  R  K  Q  A  L  E  F  L  L  S  F  P  D  S  V  V  *  *  L  N  L  E  Y  L  M  L  Y  H  T  S  S  M  K  S  S  L  R  M  A  K  A  L  V  F  G  S  Y  S  Q  G  C  V  L  F  L  L  T  W  *  T  W  G  G  N  M  I  L  I  I  C  D  F  I  T  D  L  G  F  W  T  I  K  L  L  C  S  *  R  S  T  S  F  C  I  I  L  F  N  I  N  I  Y  Y  D  *  N  *  *  L  D  E  </second_frame>
            <third_frame>   P  I  I  A  L  C  *  S  T  P  W  S  S  P  A  V  H  P  G  R  F  L  R  L  I  L  H  L  Y  C  V  Y  P  R  S  R  P  Y  L  F  V  F  I  V  F  F  L  E  A  Y  F  L  C  F  L  L  R  L  G  L  N  R  A  N  W  L  Q  R  I  H  I  G  N  P  N  *  F  W  I  Q  N  P  N  *  F  W  I  Q  I  *  L  L  N  R  T  I  E  S  L  F  R  L  G  M  N  R  K  R  K  *  V  K  N  I  T  D  S  *  S  S  F  F  L  E  T  K  Y  C  I  Y  D  L  N   : D  G  I  T  S  R  K  L  A  K  V  Q  E  A  A  R  E  V  P  S  Y  Y  *  Y  G  C  Q  S  R  T  F  Q  G  S  S  S  K  A  S  *  C  K  T  S  C  T  C  S  Q  I  F  K  *  H  G  K  A  P  A  Y  K  Y  Y  K  E  R  A  C  W  V  S  D  E  T  C  H  R  L  A  S  G   : D  K  A  S  F  H  T  R  T  D  Q  *  S  M  L  C  *  F  N  W  Q  *  T  C  V  *  Q  F  E  E  K  R  Q  S  I  L  *  W  Q  S  L  F  L  *   : V  E  T  C  S  E  K  *  R  A  T  T  Y  L  D  K  K  I  P  *  G  Y  C  C  Y  R  P  Q  G  C  I  P  D  C  H  G  G  P  A   : G  S  Q  R  C  W  S  N  M  A  A  V  K  F  *  L  P  G  R  H  R  L  P  K  *  S  T  S  T  H  *  G  *  *  *  F  E  T  A  I  Q  R  Y  *  I  T  T  *  H  A  *  Y  R  K  G  S  A  E  E  R  D  E  T  C  Y  Q  H  C  K  E  K  G  N  G  T  S  P  W  H  C  S  Q  A  Q  N  Q  K  E  E  A  *  D  *  Q  E  D  *  A  Y  K  C  S  S  S  R  T  L  Q  T  L  D  I  Y  W  F  I  N  F  S  R  I  E  N  K  H  W  S  S  S  S  P  F  Q  I  L  L  S  S  D  *  T  L  N  T  *  C  F  T  I  R  L  A  *  R  V  L  Y  E  W  L  K  P  W  C  L  V  P  I  H  K  V  V  F  C  F  Y  *  P  G  K  L  G  V  G  I  *  Y  *  *  F  V  I  L  L  L  T  W  V  F  G  P  S  N  C  Y  V  H  E  D  Q  H  H  F  V  S  Y  C  L  I  S  I  Y  I  T  I  K  I  S  N  L  M  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84718" stop="84720"/>
                    <exon start="85352" stop="85594"/>
                    <exon start="86709" stop="86840"/>
                    <exon start="86956" stop="87072"/>
                    <exon start="87143" stop="87472"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMASLQESLQRFKKQQEKCQAITSMAARAGPSKGAPPRPANAKPPAPAVKFSNDTERLQHINTIRKGPVGSQMKRVIDLLLETRQAFTPEQINEACYVDLIGNKPVFDSLRKNVKVYYDGNRFSYKSKHALKNKEQLLILIRKFPEGIAVIDLKDAYPTVMEDLQALKGAGQIWLLSNFDSQEDIAFPNDPRVPIKVDDDLKQLFRGIELPRDMLDIERDLQKNGMKPATNTAKRRAMAQVHGIAPKPKTKKKKHEISKRTKLTNAHLPELFKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84342" stop="84548"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STPWSSPAVHPGRFLRLILHLYCVYPRSRPYLFVFIVFFLEAYFLCFLLRLGLNRANWLQRIHIGNPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="87822" PGL_stop="87177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87822" e_stop="87177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="87822" e_stop="87177" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87822" stop="87177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87822" stop="87215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87822" stop="87221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87822" stop="87228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87822" stop="87435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257897" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTAATCGTAATATATATTGATATTAAACAATATGATACAAAATGATGTTGATCTTCATGAACATAACAATTTGATGGTCCAAAAACCCAAGTCAGTAATAAAATCACAAATTATTAGTATCATATTCCCACCCCAAGTTTACCAGGTCAGTAAAAACAAAACACAACCTTGTGAATAGGAACCAAACACCAAGGCTTTAGCCATTCGTAAAGAACTCTTCATGCTAGACGTATGGTAAAGCATTAGGTATTCAAGGTTCAGTCACTAGACAACAGAATCTGGAAAGGAGAGGAGGAACTCCAGTGCTTGTTTTCTATTCGGGAGAAGTTTATGAACCAATAGATATCTAAAGTTTGAAGAGTTCTGGAAGATGAGCATTTGTAAGCTTAGTCCTCTTGCTAATCTCATGCTTCTTCTTTTTGGTTTTGGGCTTGGGAGCAATGCCATGGACTTGTGCCATTGCCCTTCTCTTTGCAGTGTTGGTAGCAGGTTTCATCCCGTTCTTCTGCAGATCCCTTTCGATATCAAGCATGTCACGTGGTAATTCAATACCTCTGAATAGCTGTTTCAAATCATCATCAACCTTAATGGGTACTCGTGGATCATTTGGGAAGGCGATGTCTTCCTGGGAGTCAAAATTTG</gDNA_template>
            <first_frame> N  F  N  R  N  I  Y  *  Y  *  T  I  *  Y  K  M  M  L  I  F  M  N  I  T  I  *  W  S  K  N  P  S  Q  *  *  N  H  K  L  L  V  S  Y  S  H  P  K  F  T  R  S  V  K  T  K  H  N  L  V  N  R  N  Q  T  P  R  L  *  P  F  V  K  N  S  S  C  *  T  Y  G  K  A  L  G  I  Q  G  S  V  T  R  Q  Q  N  L  E  R  R  G  G  T  P  V  L  V  F  Y  S  G  E  V  Y  E  P  I  D  I  *  S  L  K  S  S  G  R  *  A  F  V  S  L  V  L  L  L  I  S  C  F  F  F  L  V  L  G  L  G  A  M  P  W  T  C  A  I  A  L  L  F  A  V  L  V  A  G  F  I  P  F  F  C  R  S  L  S  I  S  S  M  S  R  G  N  S  I  P  L  N  S  C  F  K  S  S  S  T  L  M  G  T  R  G  S  F  G  K  A  M  S  S  W  E  S  K  F  </first_frame>
            <second_frame>  I  L  I  V  I  Y  I  D  I  K  Q  Y  D  T  K  *  C  *  S  S  *  T  *  Q  F  D  G  P  K  T  Q  V  S  N  K  I  T  N  Y  *  Y  H  I  P  T  P  S  L  P  G  Q  *  K  Q  N  T  T  L  *  I  G  T  K  H  Q  G  F  S  H  S  *  R  T  L  H  A  R  R  M  V  K  H  *  V  F  K  V  Q  S  L  D  N  R  I  W  K  G  E  E  E  L  Q  C  L  F  S  I  R  E  K  F  M  N  Q  *  I  S  K  V  *  R  V  L  E  D  E  H  L  *  A  *  S  S  C  *  S  H  A  S  S  F  W  F  W  A  W  E  Q  C  H  G  L  V  P  L  P  F  S  L  Q  C  W  *  Q  V  S  S  R  S  S  A  D  P  F  R  Y  Q  A  C  H  V  V  I  Q  Y  L  *  I  A  V  S  N  H  H  Q  P  *  W  V  L  V  D  H  L  G  R  R  C  L  P  G  S  Q  N  L </second_frame>
            <third_frame>   F  *  S  *  Y  I  L  I  L  N  N  M  I  Q  N  D  V  D  L  H  E  H  N  N  L  M  V  Q  K  P  K  S  V  I  K  S  Q  I  I  S  I  I  F  P  P  Q  V  Y  Q  V  S  K  N  K  T  Q  P  C  E  *  E  P  N  T  K  A  L  A  I  R  K  E  L  F  M  L  D  V  W  *  S  I  R  Y  S  R  F  S  H  *  T  T  E  S  G  K  E  R  R  N  S  S  A  C  F  L  F  G  R  S  L  *  T  N  R  Y  L  K  F  E  E  F  W  K  M  S  I  C  K  L  S  P  L  A  N  L  M  L  L  L  F  G  F  G  L  G  S  N  A  M  D  L  C  H  C  P  S  L  C  S  V  G  S  R  F  H  P  V  L  L  Q  I  P  F  D  I  K  H  V  T  W  *  F  N  T  S  E  *  L  F  Q  I  I  I  N  L  N  G  Y  S  W  I  I  W  E  G  D  V  F  L  G  V  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87444" stop="87178"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFVSLVLLLISCFFFLVLGLGAMPWTCAIALLFAVLVAGFIPFFCRSLSISSMSRGNSIPLNSCFKSSSTLMGTRGSFGKAMSSWESKF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87484" stop="87275"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNRYLKFEEFWKMSICKLSPLANLMLLLFGFGLGSNAMDLCHCPSLCSVGSRFHPVLLQIPFDIKHVTW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="91445" PGL_stop="88159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91445" e_stop="91367"/>
            <exon e_start="91294" e_stop="91178"/>
            <exon e_start="90294" e_stop="90073"/>
            <exon e_start="89775" e_stop="89676"/>
            <exon e_start="89285" e_stop="89211"/>
            <exon e_start="89132" e_stop="89054"/>
            <exon e_start="88872" e_stop="88857"/>
            <exon e_start="88763" e_stop="88683"/>
            <exon e_start="88595" e_stop="88513"/>
            <exon e_start="88432" e_stop="88159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.550" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="0.987"/>
          <exon-intron don_prob="0.927" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91445" e_stop="91367" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91366" i_stop="91295" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91294" e_stop="91178" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.907">
            <gDNA_intron_boundary i_start="91177" i_stop="90295" i_length="883"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90294" e_stop="90073" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.550" acc_prob="0.888">
            <gDNA_intron_boundary i_start="90072" i_stop="89776" i_length="297"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89775" e_stop="89676" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.973">
            <gDNA_intron_boundary i_start="89675" i_stop="89286" i_length="390"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89285" e_stop="89211" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.771">
            <gDNA_intron_boundary i_start="89210" i_stop="89133" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="89132" e_stop="89054" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89053" i_stop="88873" i_length="181"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="88872" e_stop="88857" e_length="16"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88856" i_stop="88764" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88763" e_stop="88683" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.859" acc_prob="0.845">
            <gDNA_intron_boundary i_start="88682" i_stop="88596" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="88595" e_stop="88513" e_length="83"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.930">
            <gDNA_intron_boundary i_start="88512" i_stop="88433" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="88432" e_stop="88159" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91445" stop="91367"/>
              <exon start="91294" stop="91178"/>
              <exon start="90294" stop="90073"/>
              <exon start="89775" stop="89728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91445" stop="91367"/>
              <exon start="91294" stop="91178"/>
              <exon start="90294" stop="90073"/>
              <exon start="89775" stop="89756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91427" stop="91367"/>
              <exon start="91294" stop="91178"/>
              <exon start="90294" stop="90073"/>
              <exon start="89775" stop="89676"/>
              <exon start="89285" stop="89211"/>
              <exon start="89132" stop="89054"/>
              <exon start="88872" stop="88857"/>
              <exon start="88763" stop="88683"/>
              <exon start="88595" stop="88560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91426" stop="91367"/>
              <exon start="91294" stop="91178"/>
              <exon start="90294" stop="90073"/>
              <exon start="89775" stop="89679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88706" stop="88683"/>
              <exon start="88595" stop="88513"/>
              <exon start="88432" stop="88159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAATCTGCACTTCCATGGCAACAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAATGTAACACAG : TTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTTATACTTTTGCCT : GAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAA : ATACATTTGTTTGACATGGGTAAGCCACTTCCGGGAGAGGTCCAATTTAAGGAATCAGTTAACATTTCAGCAGGAGAGAAGCCTACAGTTGTTGATACAG : ATTTTGGACGCATTGGAATAGGAATTTGTCATGATATACGATTTCCTGAGCTGGCAATGTCATACAGTGCCCGAG : GTGCTCATTTAATATGTTACCCTGGAGCATTCAACATGAGTACTGGGGCAACCCTGTGGGAACTGGAGCAAAGAACAAG : GGCAGTAGATAACCAG : CTTTATGTGGCATCTTGCTCCCTGTCTCGAGATTCAGCCAGTAGCTACATGATATGGGGTCACTCCACTGTGGTTGGACCG : ATGGGTAAAATTATTGCAACCACTGGGCATGAGGAAGCAGCTCTAATTGCTGAAATTGATTATGCTGCGATTCAATGGACAAG : GGAAAGCCTCCCTTTGGAGAGCCAGAAGCGCAACGACATCTATCAATTCGTAGACTTGCTCAGAGAAAGTCTCAACTCCTAAGAGGCTTTAAGAGCAGGACATCTTGATCAGCTAGCATATCATAGTTCTGAAATAGGTATTTGTGGGAGTTCTTACCAAGAAAGTTGTTTTGCTTATTTTGTTGGCAATCATGGTTGTATCTTCTTTTTATGGTCATTCCAAAAGACATTAGTTAACAAATCTGGTAAAGTTTGGCATCTCTTCAAGACACTT</gDNA_template>
            <first_frame> L  N  L  H  F  H  G  N  S  C  C  S  V  L  C  L  C  S  T  A  N  S  Q  C  N  T   : V  Q  D  W  N  L  S  A  D  S  Y  H  R  E  E  C  K  H  L  Q  C  S  *  S  D  S  N  C  C  R  T  R  C  N  S  Y  T  F  A   : *  N  V  E  L  P  L  F  N  *  L  V  R  K  V  C  *  G  V  Q  R  Y  R  Q  C  P  I  I  A  Y  V  I  *  S  G  F  F  L  R  S  H  H  Y  R  W  I  D  S  G  K  G  C  W  S  A  V  Q  *  L  P  C  V  W  A  *  W  R  V  E  G  *  A  Q  K   : N  T  F  V  *  H  G  *  A  T  S  G  R  G  P  I  *  G  I  S  *  H  F  S  R  R  E  A  Y  S  C  *  Y  R :   F  W  T  H  W  N  R  N  L  S  *  Y  T  I  S  *  A  G  N  V  I  Q  C  P  R :   C  S  F  N  M  L  P  W  S  I  Q  H  E  Y  W  G  N  P  V  G  T  G  A  K  N  K  :  G  S  R  *  P   : A  L  C  G  I  L  L  P  V  S  R  F  S  Q  *  L  H  D  M  G  S  L  H  C  G  W  T   : D  G  *  N  Y  C  N  H  W  A  *  G  S  S  S  N  C  *  N  *  L  C  C  D  S  M  D  K  :  G  K  P  P  F  G  E  P  E  A  Q  R  H  L  S  I  R  R  L  A  Q  R  K  S  Q  L  L  R  G  F  K  S  R  T  S  *  S  A  S  I  S  *  F  *  N  R  Y  L  W  E  F  L  P  R  K  L  F  C  L  F  C  W  Q  S  W  L  Y  L  L  F  M  V  I  P  K  D  I  S  *  Q  I  W  *  S  L  A  S  L  Q  D  T  </first_frame>
            <second_frame>  *  I  C  T  S  M  A  T  V  A  V  Q  S  F  V  S  A  P  L  Q  I  P  N  V  T  Q  :  F  K  I  G  I  C  Q  L  I  V  T  T  E  K  S  A  N  I  F  N  A  R  S  L  I  Q  T  A  A  E  Q  G  A  T  L  I  L  L  P  :  E  M  W  N  C  P  Y  S  T  D  L  F  A  K  F  A  E  E  F  S  D  I  D  S  A  P  S  L  L  M  L  S  E  V  A  S  S  L  G  V  T  I  I  G  G  S  I  P  E  K  D  A  G  Q  L  Y  N  S  C  P  V  F  G  P  N  G  E  L  K  A  K  H  R  K  :  I  H  L  F  D  M  G  K  P  L  P  G  E  V  Q  F  K  E  S  V  N  I  S  A  G  E  K  P  T  V  V  D  T   : D  F  G  R  I  G  I  G  I  C  H  D  I  R  F  P  E  L  A  M  S  Y  S  A  R   : G  A  H  L  I  C  Y  P  G  A  F  N  M  S  T  G  A  T  L  W  E  L  E  Q  R  T  R :   A  V  D  N  Q  :  L  Y  V  A  S  C  S  L  S  R  D  S  A  S  S  Y  M  I  W  G  H  S  T  V  V  G  P  :  M  G  K  I  I  A  T  T  G  H  E  E  A  A  L  I  A  E  I  D  Y  A  A  I  Q  W  T  R :   E  S  L  P  L  E  S  Q  K  R  N  D  I  Y  Q  F  V  D  L  L  R  E  S  L  N  S  *  E  A  L  R  A  G  H  L  D  Q  L  A  Y  H  S  S  E  I  G  I  C  G  S  S  Y  Q  E  S  C  F  A  Y  F  V  G  N  H  G  C  I  F  F  L  W  S  F  Q  K  T  L  V  N  K  S  G  K  V  W  H  L  F  K  T  L </second_frame>
            <third_frame>   K  S  A  L  P  W  Q  Q  L  L  F  S  P  L  S  L  L  H  C  K  F  P  M  *  H  S :   S  R  L  E  F  V  S  *  *  L  P  Q  R  R  V  Q  T  S  S  M  L  V  V  *  F  K  L  L  Q  N  K  V  Q  L  L  Y  F  C  L :   K  C  G  I  A  L  I  Q  L  T  C  S  Q  S  L  L  R  S  S  A  I  *  T  V  P  H  H  C  L  C  Y  L  K  W  L  L  P  *  E  S  P  L  *  V  D  R  F  R  K  R  M  L  V  S  C  T  I  A  A  L  C  L  G  L  M  E  S  *  R  L  S  T  E  K :   Y  I  C  L  T  W  V  S  H  F  R  E  R  S  N  L  R  N  Q  L  T  F  Q  Q  E  R  S  L  Q  L  L  I  Q  :  I  L  D  A  L  E  *  E  F  V  M  I  Y  D  F  L  S  W  Q  C  H  T  V  P  E  :  V  L  I  *  Y  V  T  L  E  H  S  T  *  V  L  G  Q  P  C  G  N  W  S  K  E  Q   : G  Q  *  I  T  S :   F  M  W  H  L  A  P  C  L  E  I  Q  P  V  A  T  *  Y  G  V  T  P  L  W  L  D  R :   W  V  K  L  L  Q  P  L  G  M  R  K  Q  L  *  L  L  K  L  I  M  L  R  F  N  G  Q   : G  K  A  S  L  W  R  A  R  S  A  T  T  S  I  N  S  *  T  C  S  E  K  V  S  T  P  K  R  L  *  E  Q  D  I  L  I  S  *  H  I  I  V  L  K  *  V  F  V  G  V  L  T  K  K  V  V  L  L  I  L  L  A  I  M  V  V  S  S  F  Y  G  H  S  K  R  H  *  L  T  N  L  V  K  F  G  I  S  S  R  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91441" stop="91367"/>
                    <exon start="91294" stop="91178"/>
                    <exon start="90294" stop="90073"/>
                    <exon start="89775" stop="89676"/>
                    <exon start="89285" stop="89211"/>
                    <exon start="89132" stop="89054"/>
                    <exon start="88872" stop="88857"/>
                    <exon start="88763" stop="88683"/>
                    <exon start="88595" stop="88513"/>
                    <exon start="88432" stop="88351"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICTSMATVAVQSFVSAPLQIPNVTQFKIGICQLIVTTEKSANIFNARSLIQTAAEQGATLILLPEMWNCPYSTDLFAKFAEEFSDIDSAPSLLMLSEVASSLGVTIIGGSIPEKDAGQLYNSCPVFGPNGELKAKHRKIHLFDMGKPLPGEVQFKESVNISAGEKPTVVDTDFGRIGIGICHDIRFPELAMSYSARGAHLICYPGAFNMSTGATLWELEQRTRAVDNQLYVASCSLSRDSASSYMIWGHSTVVGPMGKIIATTGHEEAALIAEIDYAAIQWTRESLPLESQKRNDIYQFVDLLRESLNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88350" stop="88159"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EALRAGHLDQLAYHSSEIGICGSSYQESCFAYFVGNHGCIFFLWSFQKTLVNKSGKVWHLFKTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="94851" PGL_stop="92010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94851" e_stop="94801"/>
            <exon e_start="93797" e_stop="93663"/>
            <exon e_start="92506" e_stop="92010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.980"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.941"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="94851" e_stop="94801" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94800" i_stop="93798" i_length="1003"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="93797" e_stop="93663" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="93662" i_stop="92507" i_length="1156"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="92506" e_stop="92010" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94851" stop="94801"/>
              <exon start="93797" stop="93663"/>
              <exon start="92506" stop="92010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCACGATGATATCTGATGGTCAGAGGCCTTTTGATGTGTTCGCTGAAGAG : CTTGGGTCCGCAGAGCTTTTCACCCAGGAATCTAAGTTTTTAACTTATGGGAATGGTAAAGACAAGCCTGCCACTGGCATCATGTTCGAGAAGGAGCAAATGCATGGGCTATATTTTAATCAGTCTCCTTCAAAG : GATGTTGCGTTAGCAATGGTTTCTATGAGACCTATTCCTCTTGGTCCGATGATGGACAAGCTGTCACTGACACCTGAAAAGTATGGAACTAGTCGTAGATTTTATATCCAGACATTGGATGATCATGCTCTTTCACCAGATGTCCAAGAAAAGCTTGTGAGGGTAAACCCTCCTGAAGGAGTTTTCAAGATCAAAGGCAGTGACCATTCTCCATTCTTCTCAAAGCCACAGTCACTGCATAAGATTTTGGTTGAAATTGCGCAGATTCCATGATGTTAATTTCTCTGGGGAAGTTTTTTTCATAGCAAGAGTGGCTTCATTGATTCTTATGGAGGCTGTAGAATCCATGAGGTTGTTGGTTGTACAGAAGAGGAGAATGACTCAGCTTGTTTTAAATCCATTTTCATATTTTATTTCACTTTTATCATTTTAGGCATTGGTTCATAGTTGAAATATTCTTCTTGTAGAGTTACAGCTAAGATAGCAATTTGACTTGA</gDNA_template>
            <first_frame> A  T  M  I  S  D  G  Q  R  P  F  D  V  F  A  E  E  :  L  G  S  A  E  L  F  T  Q  E  S  K  F  L  T  Y  G  N  G  K  D  K  P  A  T  G  I  M  F  E  K  E  Q  M  H  G  L  Y  F  N  Q  S  P  S  K  :  D  V  A  L  A  M  V  S  M  R  P  I  P  L  G  P  M  M  D  K  L  S  L  T  P  E  K  Y  G  T  S  R  R  F  Y  I  Q  T  L  D  D  H  A  L  S  P  D  V  Q  E  K  L  V  R  V  N  P  P  E  G  V  F  K  I  K  G  S  D  H  S  P  F  F  S  K  P  Q  S  L  H  K  I  L  V  E  I  A  Q  I  P  *  C  *  F  L  W  G  S  F  F  H  S  K  S  G  F  I  D  S  Y  G  G  C  R  I  H  E  V  V  G  C  T  E  E  E  N  D  S  A  C  F  K  S  I  F  I  F  Y  F  T  F  I  I  L  G  I  G  S  *  L  K  Y  S  S  C  R  V  T  A  K  I  A  I  *  L   </first_frame>
            <second_frame>  P  R  *  Y  L  M  V  R  G  L  L  M  C  S  L  K  S :   L  G  P  Q  S  F  S  P  R  N  L  S  F  *  L  M  G  M  V  K  T  S  L  P  L  A  S  C  S  R  R  S  K  C  M  G  Y  I  L  I  S  L  L  Q  R :   M  L  R  *  Q  W  F  L  *  D  L  F  L  L  V  R  *  W  T  S  C  H  *  H  L  K  S  M  E  L  V  V  D  F  I  S  R  H  W  M  I  M  L  F  H  Q  M  S  K  K  S  L  *  G  *  T  L  L  K  E  F  S  R  S  K  A  V  T  I  L  H  S  S  Q  S  H  S  H  C  I  R  F  W  L  K  L  R  R  F  H  D  V  N  F  S  G  E  V  F  F  I  A  R  V  A  S  L  I  L  M  E  A  V  E  S  M  R  L  L  V  V  Q  K  R  R  M  T  Q  L  V  L  N  P  F  S  Y  F  I  S  L  L  S  F  *  A  L  V  H  S  *  N  I  L  L  V  E  L  Q  L  R  *  Q  F  D  L  </second_frame>
            <third_frame>   H  D  D  I  *  W  S  E  A  F  *  C  V  R  *  R   : A  W  V  R  R  A  F  H  P  G  I  *  V  F  N  L  W  E  W  *  R  Q  A  C  H  W  H  H  V  R  E  G  A  N  A  W  A  I  F  *  S  V  S  F  K   : G  C  C  V  S  N  G  F  Y  E  T  Y  S  S  W  S  D  D  G  Q  A  V  T  D  T  *  K  V  W  N  *  S  *  I  L  Y  P  D  I  G  *  S  C  S  F  T  R  C  P  R  K  A  C  E  G  K  P  S  *  R  S  F  Q  D  Q  R  Q  *  P  F  S  I  L  L  K  A  T  V  T  A  *  D  F  G  *  N  C  A  D  S  M  M  L  I  S  L  G  K  F  F  S  *  Q  E  W  L  H  *  F  L  W  R  L  *  N  P  *  G  C  W  L  Y  R  R  G  E  *  L  S  L  F  *  I  H  F  H  I  L  F  H  F  Y  H  F  R  H  W  F  I  V  E  I  F  F  L  *  S  Y  S  *  D  S  N  L  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94851" stop="94801"/>
                    <exon start="93797" stop="93663"/>
                    <exon start="92506" stop="92234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATMISDGQRPFDVFAEELGSAELFTQESKFLTYGNGKDKPATGIMFEKEQMHGLYFNQSPSKDVALAMVSMRPIPLGPMMDKLSLTPEKYGTSRRFYIQTLDDHALSPDVQEKLVRVNPPEGVFKIKGSDHSPFFSKPQSLHKILVEIAQIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 249 chains have been computed
$ 
$ memory statistics:
$ 406928 bytes spliced alignments in total
$ 148 spliced alignments have been stored
$ 2749 bytes was the average size of a spliced alignment
$ 28280 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1767 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 280 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:35:36
-->
