<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:35:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340895" ref_strand="-" ref_description="SGN-U340895        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G53920.1 | Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to Anther-specific proline-rich proteins SP:P40603 SP:P40602 from {Arabidopsis thaliana}; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase | chr1:20141380-20143305 FORWARD | Aliases: T18A20.15, T18A20_15 (evalue: 2e-28, score=123) genbank/nr: gi|21358785|gb|AAM47031.1| lipase SIL1 [Brassica rapa subsp. pekinensis](evalue: 3e-30, score=135)">
      <seq>tcaaagtatttgcagatagcattcataatccaacaaaatacggttttaagatatcagagacggcttgttgtggaactggtccgtttcgagggattcttagttgtggagggaagaggcaggtaaaagagtatgagttatgtaagaatgtgaaagactacttgttttttgactctgttcatcccagtgaactggcctaccaacaatacgctgcattactgtggaatggaactacagatgtcgtagcacctcacaacctaaaatccttttttgaaagttcgaactccagatgtcctagcagcttacaattcctactatatatgaagaataaacaacaatgtgaaatatgatgttaaggagcttcatctctagtaatttttctgttcttgtgtaatcaaatattttggctgtacgctctcgtgcttaaataatctagaacttcttgactgccatgtgtagtaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7365" stop="6132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7065" g_stop="7024" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7023" i_stop="6850" i_length="174">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6849" g_stop="6437" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="455" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="491"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U340895" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340895" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7065" e_stop="7024"/>
          <exon e_start="6849" e_stop="6437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTATTTGCAGATAGCATTCATAATCCAACAAAATACGGTATCTTCTATCTCTTCATCAAGTATTTTCATATTCATTCAAATTCTGTAGCAAAAAGTCCGCTAACAGAGGATGCAATGTTCATAACAAAATGAAACTATATATGTAGAGAAAACGCGTTAATGTTTTTAGTTGCTGTATACACAATGTTTCAATTTATTTTGTTTTGTTTAGGTTTTAAGATATCAGAGACGGCTTGTTGTGGAACTGGTCCGTTTCGAGGGATTCTTAGTTGTGGAGGGAAGAGGCAGGTAAAAGAGTATGAGTTATGTAAGAATGTGAAAGACTACTTGTTTTTTGACTCTGTTCATCCCAGTGAACTGGCCTACCAACAATACGCTGCATTACTGTGGAATGGAACTACAGATGTCGTAGCACCTCACAACCTAAAATCCTTTTTTGAAAGTTCGAACTCCAGATGTCCTAGCAGCTTACAATTCCTACTATATATGAAGAATAAACAACAATGTGAAATATGATGTTAAGGAGCTTCATCTCTAGTAATTTTTCTGTTCTTGTGTAATCAAATATTTTGGCTGTACGCTCTCGTGCTTAAATAATCTAGAACTTCTTGACTGCCATGTGTA</genome_strand>
        <mrna_strand>TCAAAGTATTTGCAGATAGCATTCATAATCCAACAAAATACG..............................................................................................................................................................................GTTTTAAGATATCAGAGACGGCTTGTTGTGGAACTGGTCCGTTTCGAGGGATTCTTAGTTGTGGAGGGAAGAGGCAGGTAAAAGAGTATGAGTTATGTAAGAATGTGAAAGACTACTTGTTTTTTGACTCTGTTCATCCCAGTGAACTGGCCTACCAACAATACGCTGCATTACTGTGGAATGGAACTACAGATGTCGTAGCACCTCACAACCTAAAATCCTTTTTTGAAAGTTCGAACTCCAGATGTCCTAGCAGCTTACAATTCCTACTATATATGAAGAATAAACAACAATGTGAAATATGATGTTAAGGAGCTTCATCTCTAGTAATTTTTCTGTTCTTGTGTAATCAAATATTTTGGCTGTACGCTCTCGTGCTTAAATAATCTAGAACTTCTTGACTGCCATGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332487" ref_strand="+" ref_description="SGN-U332487        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G40990.1 | Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to lipase (Arabidopsis thaliana) GI:1145627; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr5:16436148-16437628 FORWARD | Aliases: MEE6.6, MEE6_6 (evalue: 2e-43, score=171) genbank/nr: gi|21358785|gb|AAM47031.1| lipase SIL1 [Brassica rapa subsp. pekinensis](evalue: 5e-44, score=179)">
      <seq>ctcaagtttgtgcatctttgttttggttacacactttgccacaccaattgtgtgccatgaaagagctgccctttttgtgttcggtgattcggttttcgattctggaaataataagtacatcaacgccactgctgacttgcagggaagtaattactttccttatggagaatcattctttaagcatcctactggcagggtgtctaatggacgccttattcctgattttatcgctgaatatgctaatttgccatttattccgccctactttgaaattgggaagaaacaattgattcatggggtaaactttgcatcagccggttctggttgtttggcggaaactagtggtgccattgttctaaaaactcagttgaagaattttgaaaatgtgatacaactgttgaagaggaaaatggggaaaacagagtcccataaaatcctggcaaatgcagtatatatttttagcactggtagcaatgacatgtttgcctctttagtaccaaattcgacttttccatattccgatagagaatatctacagatgattatgggcaacttgacttctgttttaaagggagtttataaaagaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8437" stop="7101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="7908" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7907" i_stop="7837" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7836" g_stop="7715" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="352" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7714" i_stop="7631" i_length="84">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7630" g_stop="7412" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="571" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7411" i_stop="7289" i_length="123">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7288" g_stop="7270" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="590" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U332487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="7908"/>
          <exon e_start="7836" e_stop="7715"/>
          <exon e_start="7630" e_stop="7412"/>
          <exon e_start="7288" e_stop="7270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGTTTGTGCATCTTTGTTTTGGTTACACACTTTGCCACACCAATTGTGTGCCATGAAAGAGCTGCCCTTTTTGTGTTCGGTGATTCGGTTTTCGATTCTGGAAATAATAAGTACATCAACGCCACTGCTGACTTGCAGGGAAGTAATTACTTTCCTTATGGAGAATCATTCTTTAAGCATCCTACTGGCAGGGTGTCTAATGGACGCCTTATTCCTGATTTTATCGGTAAATTTATTTGCTTTTCTTTGAAAATTAATCAAACTTATATGCAATTTGACTCAAACATAATTTTGCAGCTGAATATGCTAATTTGCCATTTATTCCGCCCTACTTTGAAATTGGGAAGAAACAATTGATTCATGGGGTAAACTTTGCATCAGCCGGTTCTGGTTGTTTGGCGGAAACTAGTGGTGCCATTGTAAGCGACAATATATGTATGTGTATATATATACATATATGTCCTTTATTGTTTGAATTTTAAATGTTGGTTTCCATTTGACAGGTTCTAAAAACTCAGTTGAAGAATTTTGAAAATGTGATACAACTGTTGAAGAGGAAAATGGGGAAAACAGAGTCCCATAAAATCCTGGCAAATGCAGTATATATTTTTAGCACTGGTAGCAATGACATGTTTGCCTCTTTAGTACCAAATTCGACTTTTCCATATTCCGATAGAGAATATCTACAGATGATTATGGGCAACTTGACTTCTGTTTTAAAGGTACTCTAATATTGATCTTTTCTATTGATGTTATAGACGGGTTTGATGGTATTGCAAGATAATATTTTGACAAAATTGAATTAATAAATGGACAAGTGACGTTTAAATGAATGAATGCAACAGGGAGTTTATAAAGGAGGAG</genome_strand>
        <mrna_strand>CTCAAGTTTGTGCATCTTTGTTTTGGTTACACACTTTGCCACACCAATTGTGTGCCATGAAAGAGCTGCCCTTTTTGTGTTCGGTGATTCGGTTTTCGATTCTGGAAATAATAAGTACATCAACGCCACTGCTGACTTGCAGGGAAGTAATTACTTTCCTTATGGAGAATCATTCTTTAAGCATCCTACTGGCAGGGTGTCTAATGGACGCCTTATTCCTGATTTTATCG.......................................................................CTGAATATGCTAATTTGCCATTTATTCCGCCCTACTTTGAAATTGGGAAGAAACAATTGATTCATGGGGTAAACTTTGCATCAGCCGGTTCTGGTTGTTTGGCGGAAACTAGTGGTGCCATT....................................................................................GTTCTAAAAACTCAGTTGAAGAATTTTGAAAATGTGATACAACTGTTGAAGAGGAAAATGGGGAAAACAGAGTCCCATAAAATCCTGGCAAATGCAGTATATATTTTTAGCACTGGTAGCAATGACATGTTTGCCTCTTTAGTACCAAATTCGACTTTTCCATATTCCGATAGAGAATATCTACAGATGATTATGGGCAACTTGACTTCTGTTTTAAAG...........................................................................................................................GGAGTTTATAAAAGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329234" ref_strand="+" ref_description="SGN-U329234        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G14225.1 | Symbol: EMB1474 | GDSL-motif lipase/hydrolase family protein, contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr3:4734623-4736000 REVERSE | Aliases: MLE3.2, EMB1474, EMBRYO DEFECTIVE 1474 (evalue: 6e-26, score=114) genbank/nr: gi|15231809|ref|NP_188039.1| GDSL-motif lipase/hydrolase protein [Arabidopsis thaliana](evalue: 5e-24, score=114)">
      <seq>gaaaatgggtgaaacagagtcgaaacagatcctctccaacgctgtatatattttcagccctgccaataatgatttccttttccctttcttagcaaatttgacttctccatattccgatacagaatatcaacagatggttatgggaaatttgacttctgttttgaagggaatttacaaggaaggagggagaaagtttgtgatgtttaatgtggctccattaggatgtgttccttctatgagggctctcaaccttcaaaaaggagttacgaatgggagttgtatggaggaagcaacagacaaagcgaagacgtttaattcagctctcccaagaatgtttaaaaaactagagaagcaattgcctggatttaagtatacaatattcaacttcttcaaagtatttgcagatagcattaataatccaacaaaatatggtatcttctatctcattgaattcaaaatcaagtatctttatgttcgattatatattgtgcagtgttgatttatgtaagaatagctgttttaccaagagtttactaatgtacaataagtatcaacaggaattggtagtaagtaatcttttatctttaaccaaatttctcggctcgagaaatggtatgaaatcgcgtttgttaaggagcgtatgtaggacttcctggttcaaatccggatttagtctccccatgagaaaccttcaataaagtaaaagaaaaaataggaattgatcatagaaagatgaagcataaatcatatgtaggtttattttttttctctattcacagtacaaactctgtagcagaaatttgatggctctgctaacaaagtagaatgttgatgcaataatcataacaaaatgaaatcacacaaaccatattagagatgaataaagtcaaatgtttgattgttaaaaaaaaaaaaaaaaaaaacatttttggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14843" stop="13187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14543" g_stop="14378" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14377" i_stop="14234" i_length="144">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14233" g_stop="13463" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="937" r_length="771" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U329234" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>937</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14543" e_stop="14378"/>
          <exon e_start="14233" e_stop="13463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGGTGAAACAGAGTCGAAACAGATCCTCTCCAACGCTGTATATATTTTCAGCCCTGCCAATAATGATTTCCTTTTCCCTTTCTTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCAACAGATGGTTATGGGAAATTTGACTTCTGTTTTGAAGGTAATTAATATTTGATCTTTTCGATTTAATTTATTTACGAGTGAGTAGTAGTTTTTATCTATTCAAGAAACAAATCAGATATTGTTACTTGCATGTTCTACGTGAAGTTAGTCCTAGGACTAATTCGTTGTACTTTGTTTACAGGGAATTTACAAGGAAGGAGGGAGAAAGTTTGTGATGTTTAATGTGGCTCCATTAGGATGTGTTCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTACGAATGGGAGTTGTATGGAGGAAGCAACAGACAAAGCGAAGACGTTTAATTCAGCTCTCCCAAGAATGTTTAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGTATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACAGGAATTGGTAGTAAGTAATCTTTTATCTTTAACCAAATTTCTCGGCTCGAGAAATGGTATGAAATCGCGTTTGTTAAGGAGCGTATGTAGGACTTCCTGGTTCAAATCCGGATTTAGTCTCCCCATGAGAAACCTTCAATAAAGTAAAAGAAAAAATAGGAATTGATCATAGAAAGATGAAGCATAAATCATATGTAGGTTTATTTTTTTTCTCTATTCACAGTACAAACTCTGTAGCAGAAATTTGATGGCTCTGCTAACAAAGTAGAATGTTGATGCAATAATCATAACAAAATGAAATCACACAAACCATATTAGAGATGAATAAAGTCAAATGTTTGATTGTTATATAAAAAATGTTCATTTTAATTTACTTAAAAG</genome_strand>
        <mrna_strand>GAAAATGGGTGAAACAGAGTCGAAACAGATCCTCTCCAACGCTGTATATATTTTCAGCCCTGCCAATAATGATTTCCTTTTCCCTTTCTTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCAACAGATGGTTATGGGAAATTTGACTTCTGTTTTGAAG................................................................................................................................................GGAATTTACAAGGAAGGAGGGAGAAAGTTTGTGATGTTTAATGTGGCTCCATTAGGATGTGTTCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTACGAATGGGAGTTGTATGGAGGAAGCAACAGACAAAGCGAAGACGTTTAATTCAGCTCTCCCAAGAATGTTTAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGTATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACAGGAATTGGTAGTAAGTAATCTTTTATCTTTAACCAAATTTCTCGGCTCGAGAAATGGTATGAAATCGCGTTTGTTAAGGAGCGTATGTAGGACTTCCTGGTTCAAATCCGGATTTAGTCTCCCCATGAGAAACCTTCAATAAAGTAAAAGAAAAAATAGGAATTGATCATAGAAAGATGAAGCATAAATCATATGTAGGTTTATTTTTTTTCTCTATTCACAGTACAAACTCTGTAGCAGAAATTTGATGGCTCTGCTAACAAAGTAGAATGTTGATGCAATAATCATAACAAAATGAAATCACACAAACCATATTAGAGATGAATAAAGTCAAATGTTTGATTGTTAAAAAAAAAAAAAAAAAAAACATTTTTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315391" ref_strand="+" ref_description="SGN-U315391        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|56407681|gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] (evalue: 7e-23, score=108)">
      <seq>tgattttggaaccttgagtatgggtaaaaagactgtttctagggtggttggtattggtacaatttgtttggaaactagtattggaactaaactagttttgaacaatgtgaaacatgctcttgatgttcgtctgcacctaatttctgttggtgttttagatgatgaaggatatgttagtaccaacggtgatggaaaatggaagctcattaagggttccttggttgtggctcgtggtaacaaacgtcgtggtcaatactggactacggcctctgcttgttgatatggtgaatgcggttgaaagcgatagctcttcaacattatggctcctcttggcccgtggttttttcccttattcagaagggcttccacgtaaaattattggtgtcgttattttctcattttatttccattacatttaccatatatacttttatgcttgtccgtgttttcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21286" stop="17029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20986" g_stop="20663" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20662" i_stop="17461" i_length="3202">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17460" g_stop="17329" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="454" r_length="132" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U315391" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20986" e_stop="20663"/>
          <exon e_start="17460" e_stop="17329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATAAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTTCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCTATACTGGACTACAGACTCTGCTTGTGTTGATATGGTGAATGCGGTTGAGAGCAATAGCTCTTCAACATTATGGCACAAGAGGCTTAGCCACATTAGCGAGAAAGGACTTAATGTTCTAGCCAAGAAGAAATTATGATCAAATTTCCAAAGTGCTAAATTAGAAAATTGTGAGCACTGCTTGGCTGGTAAACAAAATAGAGTTTCCTTTAAGTCCTACCCTCCTTCGAGAAAGACAGAGTTGCTTGAGTTAGTGCACTCTGATTTATGTGGTCCAATGAAGACAAAGACATTGGGTGGTGCACTTTACTTTGTCACTTTCATTGATGATTGCTCGAGAAAACTTTGGGTCTATGTCTTGAAGACTAAAGACCAAGTGTTAGGTGTCTTTAAGCAGTTTCAGGCTTCAGTTGAAAGAGAAACTGGAAAGAAATTGAAATGTATTTGTACTGATAATGGTGGTGAATATTGTGGACCATTTGACGAATACTGCAAGCATCAAGGTATTAGACACCAGAAGACTCCTCCCAAGACTCCTAAGCTTAATGGTTTGGCTGAGAGTATGAACAGGACCTTGATGGAAAGAGTTAGATGTTTGCTTTCTGAAGCAAAATTGCCGAACTCATTTTGGGGTGAGGCTTTATTGACCACTGCACATGTTATTAATCTATCTCATGTTGTTGCTTTGCAAAGTGATGTAGCAAATAGTGTTTGGTATGGAAAGGATGTATCCTATGACCATTTGAGAGTATTTGGTTGCAAAGCTTTTGTACATGTGTCGAAAGATGAGAGGTCAAAGTTAGATACTAAGACAAGGCAGTGCATCTTCATTGAATATGGCCTAGATGAATTTGGTTACAGGCTATATGATCCAATTGAAAAGAAACTTGTGAGAAGCCGTGATATTATTTTCATGGAGAATCAAACAATTGAAGATATTGACAAAGCAGAGAAGGTAGAATCTTCAAGTTTTGATGGTATAGTTCATCATGATGAAGTTCCTCACACAAGTGTGCATGATGTTGTTGGGTTTGATAATCATGGTGATGCCCAAAATCATGTATTGAATCAACATGTTGATGTTGATAATAACAATGATATTATTATTGATAATCCTGTTGCTCATGAAGTTGTGAACGAATTAAATATTCCGTTTCGGAGGTCCACAAGATAGTGGTTTCCTTCCTCCCGTTATTCACCCAATGAGTATGTGTTACTCACTGACGGGGGAGAACCTGAATGTTATGAGGAGGCCATGGAAGATGAGCACAAGAATCAATGGATTGAAGTCATGCAAGATGAGATGAAATTTTTGCATGAGAACCACACTTATGAGTTGGTAAAATTGCCCAAGGGCATGAGAGCTTTGAAGAACAAGTGGGTGTTCAAAGTTAAAGTTGAAGAACACAACTTGAAGCCCAGGTATAAAGCTAGATTGGTTGTTAAGGGATTCGGTCAAAGGAAAGGTATTGACTTTGATGAAATATTTTCTCCTGTTGTGAAAATGTCCTCGATTCGCACAGTTCTAGGTTTGGCTGCTAGTCTTAATTTAGAGATTGAGCAGATGGATGTGAAGACGGCTTTCCTTCACGGTGACCTAGAAGAAGAGATTTATATGGAACAACCTGAGGGCTTCAAAGTAGATGGTAAAGAACATTTTGTATGCAAACTCAAAAAGAGTCTCTATGGCCTAAAACAAGCTCCTAGACAGTGGTACAAAAAGTTTGAATATGTTATGGGGGAGCAAGTCTATAAGAAGACTTCTTCAGATCATTGCGTATTTGTACAAAAATTTTCTGACAATGATTTTATCATCCTTTTGTTGTATGTGGATGATATGTTGATTGTGGGCAAAAATACTTCCAAGATTGACGAGCTAAAGAAAGAGTTGTGTAAGTCTTTTTCTATGAAAGATTTGGGTCATGCCAAACAAATTTTGGGCATGAGAATTACTCGTCTTAGAGATAAAAGGAAGATTTATTTGTCACGGAGAAGTACATTGAACGTGTACTGGAGCGCTTCAATATGAAGAATGCTAAGCCTGTTAGTATACCTCTTGCTGGTCATATGAAGTTGAGCAAGAAGATGTGTCCTACAGCTAGGGAGGAAAAAGAGAATATGGCCAAAGTTCCATATTCCTCCGTCATCGGAAGTCTAATGTATGCAATGGTGTGCACTAGACCTGATATTGCTCATGCAGTTGGTGTTGTCAGTAAATTTCTCGAAAATCCGGGAAAAGAGCATTGGGAAGCTGTGAAATGGATACTCAGGTATCTTAGAGGTAGCTCAGATGAATGCTTGTGTTTTGGAGCATCAAATCCAATCTTGAAAGACTATACAGATTCTGATATGGCAGGTGACCTTGATAACAGAAAATCCACTACTGGATATTTGTTTACTTTTTCAGGGGGAGCTATATCATGGCAGTCAAAGTTGTAGAAGTGTGTTGCACTATCTACAACTGAAGCTGAGTATATTGCGGCTACTGAACCCGGCAAGGAGATGATATGGCTAAAGCGATTTCTTCAAGAGCTTGGTTTGAATCAGATGGAGTATATTGTCTATTGTGACAGTCAGAGTGCAATAGACTTGAGCAAGAACTCCATGTACCATGCAAGAACAAAACACATTGACGTCAGATATCATTGGATTCGTGAGAAAGTGGAGAATGAATCATTTCACGTCAAAAAGATTCACACAAGTGAAAATCCTGCAGATATGCTGACCAAGATGATACCAAAAGACAAGTTCGAGTTATGCAAAGAACTTGTGGGTATGAGCTCTTTCTAAAGAAGTTGAAGATACATTCTTCTAGTAAATGGGACTGGAGGGAGAGATTTGTTGAATCCATCCCATTGTTTTAGTCAACTTTAGCTATTCAATTGGTACAAGCAATTGTTAAAAAGGAATAGTAATTGGAGTTGAAAAGAAAAGATTTGGTAGTTGGCAAATTGGTAAGATTTGCAACCATTTTTGACTTTGCTATGTTTACATATGTCATTAGTGACATAGGTATGGTTTTATCCTTCTATAAATAGAGAATTCTTGCTCATTTGTAGAATACACCAAGTTAGAGAGAAAAACCATTTTGAGAGCAAAGTGAAGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAATGTAAAATTCCTTACTATAGTAATATTAGTTGCTCCTCTTGGCCCGTGATTTTTTCCCTTATTCAGAAGGGTTTTCACGTAAAATTCTTGGCGTCGTTATTTTCCCATTTTATTTCCATTACATTTACCATATATACTTTTGTGCTTGTCCGTATTTTCCCAA</genome_strand>
        <mrna_strand>TGATTTTGGAACCTTGAGTATGGGTAAAAAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTATTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCTTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCAATACTGGACTACGGCCTCTGC-T-TGTTGATATGGTGAATGCGGTTGAAAGCGATAGCTCTTCAACATTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGCTTCCACGTAAAATTATTGGTGTCGTTATTTTCTCATTTTATTTCCATTACATTTACCATATATACTTTTATGCTTGTCCGTGTTTTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315275" ref_strand="+" ref_description="SGN-U315275        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, similar to GI:807956 from (Saccharomyces cerevisiae)similar to polyphosphoinositide binding protein Ssh2p (GI:2739046) {Glycine max}; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus | chr1:27157243-27159326 REVERSE | Aliases: T9N14.8, T9N14_8(evalue: 1e-113, score=407) genbank/nr: gi|8894548|emb|CAB95829.1| hypothetical protein [Cicer arietinum](evalue: 9e-133, score=477)">
      <seq>tggaccccattctttgtgtgtgtgggtaacgagctgtcatctccaactcctcggcagactgttctgttcacttcttcttatacatataaaccctcacttctaccaccattttcaccattaccaaccaattcttctatacattaataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgagaagaaagttgaaacagagaaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggcgccggcagcagagacaccatctgagccatcggagacagagaaggtggaggcagtcgaggaaatcaaggaaaccattgttgaagtaccggctgcggttgctgtgatggcctccacggaggagccaccggctgcagaggcagaggaaccgaaaacagagcaaaccccaccagcagcaccagaagaagtatccatatggggaataccccttttagcagatgagagaagtgatgtaatccttctcaagtttctgcgagcgagagatttcaaggtgaaagaagctttcaccatgttgaaaagtgttgtcgcatggagaaaagaattcaagattgatgaactcttggatgagaaagaattaggacaaggacttgaaaaagttgtttacaatcacggagtagacaaagaaggtcaccctgtatgttacaatgcatttggtgagttccaagacaaagaattgtaccaaaacacttttgctgatgacaaagagaaactcaccaaattcctcagatggagaattcaattcatggagaaatccatcaggaatcttgattttagccctgatggtatcaacacttttgttcaagttcttgatctgaagaattcacctggactcttcttttacaagaaagaacttcgccaagccaccaatcgtgcccttctattactccaggataattaccctgaatttgttgccaagcaggtgttcatcaatgttccatggtggtacccagcttactacaggatgattaatgcatctttcactacaaggaccaagagcaagtttgtttttgctggtccttcaagatctgctgatactctattcaaatacatagcacctgaacaagtaccagcacaatatggtggacttagcaaggagggtgaagaggaattcaccactgctgaaccagccactgaggaaatcattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattctcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgatacattttcttctgaaatattttgtgtaaatctaatgctgcctctcattttccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagggaaaaaaaaaaaaataaaannnngggggggggggggcaaaaaaaaannnnnnaaaaaggggggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40442" stop="45444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40742" g_stop="42174" g_length="1433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1433" r_length="1433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42255" g_stop="42379" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1434" r_stop="1558" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42459" g_stop="42600" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1559" r_stop="1700" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42804" g_stop="43309" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1701" r_stop="2206" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43310" i_stop="44130" i_length="821">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44131" g_stop="44156" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="2207" r_stop="2232" r_length="26" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-U315275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2232</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40742" e_stop="42174"/>
          <exon e_start="42255" e_stop="42379"/>
          <exon e_start="42459" e_stop="42600"/>
          <exon e_start="42804" e_stop="43309"/>
          <exon e_start="44131" e_stop="44156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCCCATTCTTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTACCCTTAAAGCTGTTTTTATATTGTTATATGATGTTGGTATTTAGATATTAACTGGATTTTGATGTTATGGTGTGAAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCTATATTTTGGTCCACTTTCATAAGTTTTTCATCTTCCTGTTTTTATGTAAAAAAAGTTTATCCCTAATTGTGATATTTTTGAATTAGGGTTTAAAGGGGTTCTAGTAAAATATTACATAAGGATTGTACTCTTTAGGGAGAGACTCTCTTTCTTTCTCAGATTCAAATGCGGGACCGGTAGTAGGGGTCAACGTTTTTGCTGTTACAGAATCCCGTGCTCGAGAGATAGTTCAGACGATAAATATTTTTACTTCCATTCAGACGATAAACACCTTTACTTCCATTCATTGTGAAATTCGAGTGTGTAAGTAAACGAACTTGCAATTGAAAGTGAGAAATGTTAGCAAATTCACAACTTTTCAATACTTAAAATTTGAGCAACGTCAAAATAAATTATTATAATTTGCTCAAGTGGGTCTAAAAGATAAGGCAGTACAATAATTTAGCCCAGAAAAGGTCCAAAATTGTTCCGTAACTTTGGACAGATTCAAAATCGTCTTTTATGTTTAAATTAAAATTAAAAATAGTCTTCCATCTTTTTGCAAACTGCTTTATTTTTATCCTCAAGATATGTGATGTTTCCACTTAGTACTCCAACACACTCAAAATTTAAGGTAATGCTATACTGACAACAACATATATTTAACAACATATATTTCATATTCATATTGAATTCTGACTAAATTTAAACTTACATAAGTGCTCACGAGTTTGATTTTCAATGAATTCTATTATATAAAACATTTCACTCCCTAATTAACTATGTGAAAAACAAAAAAAAAAAGAAGAGAAA</genome_strand>
        <mrna_strand>TGGACCCCATTCTTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG................................................................................GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA...............................................................................ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335065" ref_strand="+" ref_description="SGN-U335065        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos taurus} | chr1:7955482-7958431 REVERSE | Aliases: F12K8.13, F12K8_13(evalue: 1e-08, score=57.8) genbank/nr: patellin(evalue: 5e-08, score=62)">
      <seq>aattcttctatacattaataaaaatccattctttaagcctttttcgtttctgggtatctgaaatctgatcgggaaaccaagaaatggctgaggaaaccaagaaaatagctgaagaaaccacccctgaagtggtggtgtctgatgttacagtgagggagacacctcaacctgagccggaaactttgccggagtcaccggagaaagatgctgctccggtcactggagaatcgaaggttgaggatgaaaaggagaaggaacttgttggtgaatccaattcgtttaaggaagaaagtaacaaggttgaagaacttcctaatcctgaacaaaaagcattggctgaattcaaacagatggttcaagaagctcttaacaagcatgaattcactgcccctcctcctccgccgccggcaaaggaagaggatgagaagaaagcagccgttcccgccgaggcaccggaggcagagccagttacagaggccgcagcgccggcgacacctgatccagtgatagagacagaatcggaaccggtggccgagaagaaagttgaaacagagaaattggagaaaacagaggagaaagtaactccaccggaaactgaagcaactccggcgccggcagcagagacaccatctgagccatcggagacagagaaggtggaggcagtcgaggaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttctaaaaagaagaaacttgtttacaggtccaagaacaagatctcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttatatatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40568" stop="43502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40868" g_stop="41536" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41537" i_stop="42905" i_length="1369">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42906" g_stop="43202" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="965" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-U335065" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>966</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40868" e_stop="41536"/>
          <exon e_start="42906" e_stop="43202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTACCCTTAAAGCTGTTTTTATATTGTTATATGATGTTGGTATTTAGATATTAACTGGATTTTGATGTTATGGTGTGAAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAGTAATTACTCCTAATTTATAACTTATATTTGTTTTGGATTGAGCAAATTCTGATTTGTGATTGTTCATGAAAATTTTAGATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGG</genome_strand>
        <mrna_strand>AATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTA-TATATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315273" ref_strand="+" ref_description="SGN-U315273        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos taurus} | chr1:7955482-7958431 REVERSE | Aliases: F12K8.13, F12K8_13(evalue: 2e-34, score=142) genbank/nr: gi|8894548|emb|CAB95829.1| hypothetical protein [Cicer arietinum](evalue: 2e-39, score=165)">
      <seq>tacatagcacctgaacaagtaccagcacaatatggtggacttagcaaggagggtgaagaggaattcaccactgctgaaccagccactgaggaaatcattaagccagcttctaaacacaccattgaattcccagttactgagaaaagcacattggtttgggaagcaagagtgacagggtgggatgtatcatatggagctgaatttgtgcctagtgctgaaggtggctacaccattttcatagagaaatcaagaaaagttggggcaaatgaatcagtgatcagcactagctacaaggcaagtgaagcaggcaaagtggtaatcacaattgacaaccaaacttttaaaaagaagaaacttgtttacaggtccaagaacaagatttcagattgctgagccgccttttcttgtttcatagatttttcttttggttgatatcaactagtactattattttgagctttttgggggtatttatttatattttattggggttattttttgagctattttgctgttggattgttttttttattatatggggaatatttattatattacaaaggggttgagatgtggagtacaagttattgatacatttttttttgaaatattttgtgtaaatttaatgctgcctctcattttccttacatttttttggtgatgtgaagcttaacgttagttaatcctatacttatgtttcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42160" stop="45444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42460" g_stop="42600" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42804" g_stop="43364" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="702" r_length="561" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43365" i_stop="44130" i_length="766">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44131" g_stop="44152" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="724" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-U315273" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42460" e_stop="42600"/>
          <exon e_start="42804" e_stop="43364"/>
          <exon e_start="44131" e_stop="44152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAGGTATGCTCAAATATTTATTCACACTTTAGTTACATAAATTGTGTAGTTGTCAGATTTGATAGGTGTAAACTTAAGTTATTAGTCAGAAACTTAAGATTAGATGCACCCGTTTAAAAAGAACCTATTTTTATTTACTTAATTATATCTCAAGCGAATAGCATTTCAACTGTGTGTTGATTGTGTGAAAATGTTGGATTTTGCAGAAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCTATATTTTGGTCCACTTTCATAAGTTTTTCATCTTCCTGTTTTTATGTAAAAAAAGTTTATCCCTAATTGTGATATTTTTGAATTAGGGTTTAAAGGGGTTCTAGTAAAATATTACATAAGGATTGTACTCTTTAGGGAGAGACTCTCTTTCTTTCTCAGATTCAAATGCGGGACCGGTAGTAGGGGTCAACGTTTTTGCTGTTACAGAATCCCGTGCTCGAGAGATAGTTCAGACGATAAATATTTTTACTTCCATTCAGACGATAAACACCTTTACTTCCATTCATTGTGAAATTCGAGTGTGTAAGTAAACGAACTTGCAATTGAAAGTGAGAAATGTTAGCAAATTCACAACTTTTCAATACTTAAAATTTGAGCAACGTCAAAATAAATTATTATAATTTGCTCAAGTGGGTCTAAAAGATAAGGCAGTACAATAATTTAGCCCAGAAAAGGTCCAAAATTGTTCCGTAACTTTGGACAGATTCAAAATCGTCTTTTATGTTTAAATTAAAATTAAAAATAGTCTTCCATCTTTTTGCAAACTGCTTTATTTTTATCCTCAAGATATGTGATGTTTCCACTTAGTACTCCAACACACTCAAAATTTAAGGTAATGCTATACTGACAACAACATATATTTAACAACATATATTTCATATTCATATTGAATTCTGACTAAATTTAAACTTACATAAGTGCTCACGAGTTTGATTTTCAATGAATTCTATTATATAAAACATTTCACTCCCTAATTAACTATGTGAAAAACAAAAAAAAAAAGAAGA</genome_strand>
        <mrna_strand>TACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG...........................................................................................................................................................................................................AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTTTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTTTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATTTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTTTTTTGAAATATTTTGTGTAAATTTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340890" ref_strand="+" ref_description="SGN-U340890        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | T-complex protein 11, contains Pfam PF05794: T-complex protein 11 | chr1:8117386-8122116 FORWARD | Aliases: F19G10.11, F19G10_11(evalue: 1e-34, score=143) genbank/nr: gi|15219971|ref|NP_173706.1| expressed protein [Arabidopsis thaliana] gi|25372861|pir||D86363 hypothetical protein F19G10.11 - Arabidopsis thaliana gi|2462826|gb|AAB72161.1| unknown protein [Arabidopsis thaliana] gi|24030363|gb|AAN41345.1| unknown protein [Arabidopsis thaliana](evalue: 1e-32, score=143)">
      <seq>tgatgtggaaagttaaggatgtgaagttgttagaagaggatttaataaatactgcttgtcaactggagctctctctgatgcagacttgcaagcaggttatgggagattacgatgatctgacagccgaattcagttctttccagaagcaggtgattgaaaatcagaaacttatttgggcaaaggtcaagcagctgagtggtaatgctggacttgaacgtctggagcatgctctttctgagctgcggtctaggtttattgactccatggagactgattctccgagttcagttggttcatctgataactctgaaatcaagaattcagatgagttcaatgaaaatgccaggcccgtatctgtggaagatgattcatacttgtgcgataaaagtggctctggaactcctcaaaaaagcatatctactggtttattacgtgcaacggagaatgaagtgcttttgaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63088" stop="64454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63388" g_stop="63536" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63537" i_stop="63812" i_length="276">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63813" g_stop="64154" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="464" r_length="315" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-U340890" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.058" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63388" e_stop="63536"/>
          <exon e_start="63813" e_stop="64154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTGGAAAGTTAAGGATGTGAAGTTGTTAGAAGAGGATTTAATAAATACTGCTTGTCAACTGGAGCTCTCTCTGATGCAGACTTGCAAGCAGGTTATGGGAGATTACGATGATCTGACAGCCGAATTCAGTTCTTTCCAGAGGCAGGTGTGGGTTTGCAAGACGCGAGTTGTTCTTGAAATCTGCATTTGATGACTCCCACTCCCTTGTCTCGTGGCTGAATATCCATCTTTTCATTTTGATGTCTAAATTTTTCCACGTGTCTATATCAATTATTGTTTTTCTTGATAAGCATTCTCTATACTACGTTTCTATTTTCAAATTTCTGTTTTATTTATTTTATCTGGAGAAAATGAGACACTGAATTGGAGATAGAATACATGTTTACTGGCTTAATTCCTTGAAGCTAACTTACTGTTACAGGTGATTGAAAATCAGAAACTTATTTGGGCAAAGGTCAAGCAGCTGAGTGGTAATGCTGGACTTGAACGTCTGGAGCATGCTCTTTCTGAGCTGCGGTCTAGGTTTATTGACTCCATGGAGACTGATTCTCCGAGTTCAGTTGGTTCATCTGATAACTCTGAAATCAAGAATTCAGATGAGTTCAATGAAAATGCCAGGTGTTATGGTACACAGGGCATTGCTTGGCCCGTATCTGTGGAAGATGATTCATACTTGTGCGATAAATGTGGCTCTGGAACTCCTCAAAAAAGCATATCTACTGGTTTATTACGTGCGACTGAGAATGAAGTGCTTTTGAATGAA</genome_strand>
        <mrna_strand>TGATGTGGAAAGTTAAGGATGTGAAGTTGTTAGAAGAGGATTTAATAAATACTGCTTGTCAACTGGAGCTCTCTCTGATGCAGACTTGCAAGCAGGTTATGGGAGATTACGATGATCTGACAGCCGAATTCAGTTCTTTCCAGAAGCAG....................................................................................................................................................................................................................................................................................GTGATTGAAAATCAGAAACTTATTTGGGCAAAGGTCAAGCAGCTGAGTGGTAATGCTGGACTTGAACGTCTGGAGCATGCTCTTTCTGAGCTGCGGTCTAGGTTTATTGACTCCATGGAGACTGATTCTCCGAGTTCAGTTGGTTCATCTGATAACTCTGAAATCAAGAATTCAGATGAGTTCAATGAAAATGCC-------A-GG----C----C-----------CGTATCTGTGGAAGATGATTCATACTTGTGCGATAAAAGTGGCTCTGGAACTCCTCAAAAAAGCATATCTACTGGTTTATTACGTGCAACGGAGAATGAAGTGCTTTTGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323627" ref_strand="+" ref_description="SGN-U323627        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | T-complex protein 11, contains Pfam PF05794: T-complex protein 11 | chr4:5828622-5833657 FORWARD | Aliases: F23J3.180, F23J3_180(evalue: 4e-80, score=295) genbank/nr: gi|15233756|ref|NP_192654.1| expressed protein [Arabidopsis thaliana] gi|25372860|pir||G85092 hypothetical protein AT4g09150 [imported] - Arabidopsis thaliana gi|7267558|emb|CAB78039.1| putative protein [Arabidopsis thaliana](evalue: 3e-78, score=295)">
      <seq>agaaaatagcactgcattgtttgcttctttggttatcaagggtttgcaatttgttctaaggcagattaagaaactcaaaggtgaaataagcaaagcacgcatcaaattgttggaaccattaatcaagggacctgctggttttgaataccttagaagttctttttccaaccgctatggtcctcctactgaggctctaatctctctaccattagtgaagcaatggctatcttctgtcatgttagtggctgtgcaagagtgggatgaccacctgagttcattatcatctctgaggttgagcagtggggcacattcttcggagaaagctccaatcacacttagagctggaggtagctctctaaggatatcagatcctccaaccctgaagactaatgccgaacaaccagaatgcaagggagataaggttgatctatttttaaggcttggtttgttgcaacttgtctgtgaaattgaggggttgaccgtggaaacactacccgagactttgaaattgaatttctccagattgagagctgtccaggctatcctccagaaaatcattgttgtctgtactagcatattggttttgcggcagactcttcttgccgaatgcctggttagcagcccctcagagatggaagatatatcatcaaaatctattacaaagctgtttaagcttctggataacatggaggatgctggtattactgaagttgttgatacactgagcctttgcttagaaggtgatgagccaaagaagcttcaagcgaggaaggagatcatggcgaacgtgttggcaaagagcttgcgagcaggggatgccattttcactcgagtttcgcgcactgtttttttggcagcaaaagcaattttactttgcggaagtgtagctgagggtgggcaattggcggagaacaccctgaaacgtgttggtgccaatctactcactggaaagctggttgaggctatgaaagatctgttggttgtggcaactgtgtcagccagagttcatggttcatggtatgtagaggtgcttaaaaatatgagagctttatagcacacacacttgttcaagaaattgtcagcttgcattcttacatgaatgtataggacgggaaagttgatcttactatatgcaatataatgtattatgaaagaagtattgtttctaaatataataataaaaatcgtagccaagaacacgccaattatatgagcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64451" stop="67554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64751" g_stop="64820" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65182" g_stop="65503" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="392" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65504" i_stop="65596" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65597" g_stop="65777" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="573" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66608" g_stop="67262" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="1228" r_length="655" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-U323627" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64751" e_stop="64820"/>
          <exon e_start="65182" e_stop="65503"/>
          <exon e_start="65597" e_stop="65777"/>
          <exon e_start="66608" e_stop="67262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAGGTGAGTGTTAAATATTGTCAATTATGGTACTCATATCTAGACTTTTATAATCATACAATATTTAAATATTCTACACTAAACATGGTTCCTATTTATTGCTTCATCGGTTCTATGCCAGCTCATAACACATTTAGCTCTTGTAAGACATTATCATAAAGTGCTAATAATGTGGTGTAACTTTCTCTGACTGAGCCTCCTTGAATAAATGCAAGTCGAACACTGAGCTTTATTGTCTTGAATGAATACTGGTACTTTCAACCAGGAAAAAGAAGAACCAGAAATCGTAATGGTGGCTTCTCTGTGCTGTTTAGCTTGTCCGCCCGCATGTATTTTAATTTGATAATTCCTTACATTCCTCCAGAAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATGGTTAGTTACTTCAGTACTAAACTTAAGAATCACTCAGTTTTTTCTTGCTCAGTTTTTTCTTTTATCACATCTGGGAATCTTTTGTATCAGCAGCCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAGGTGCTGTTACTTTTCTTGGCTTTCTTCCAGCTCCTTTCTCATGCCTGCATATTTTGATGATGTGCAATACACTGGTCAATTATGTATGGTGATCCTATTTTTTCTTCAGAATTTTAATTTCTGTGTTCTCATTGCGAGGGGTATGGAATGACCTGTAAGTTGCATTTCAGATGGGCTGTTGGTCTCATCTAAAGCAAAAATAGCTTTTTAATTTTTGTTAGTTTAGATTACTTTGGTCAGAGGAAACTGTTTTTGGTAAACAATAATTCGCAATGGTCTTCTATTAGCAACAGATGTAACATTTAATGCTAATTTTGGACATGCTTAGGGCAATGGATGGATTTTGCCTAGTTACATCCCATAAATTGTAATTGTGGGGTCAGTCATGAAAATTTGTAGGTGGCTACAAATTTAAGGCAGCATTATCTTAGACGTGTTGTAAATCGTGTGTTAGGCAAGAAAATATAGTTGCGAAGTGGTGGATACTTTCAACTGGGTGAGATGTGAGTTTTAACATATACTGGGGGAAATCTGGATAGAATATGCTGGTACTCATAATAGAAGACTTTTCAATTCCTCAAGGGGTCCATTGTGAGCAGGATATCCCCTGTAGGTTTAGAAAGTGGTGACTTGCAATTTTCCGTCTTAAAATTTGTTACTATTTTTGAATTTACTTGCTATCCGCGACCTTTTGTTTTCATCTGGAAGATTTGTGTTGTTGTACTTCGGGTGGTATTACCGGGGTTAGGAAAAAGGACATGATGTAGTGGAGGAGGATCTCTTTGCTTGCTAATTTTTTATTTATTTATTTTTTGTGTGTGTGTTTGCAGCATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTATATTTCAAAT</genome_strand>
        <mrna_strand>AGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG.........................................................................................................................................................................................................................................................................................................................................................................AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATG.............................................................................................CCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320078" ref_strand="+" ref_description="SGN-U320078        Tomato 200607 #1 [12 ESTs aligned]">
      <seq>tcaagaggccacagttcatattgttatgagttaggtctattcatttcgtctcctcaaaactcctctgctcttctgctatttctatttcaataatagatgtagatattgaaaattcaagttcatttattttccacctctctctctctcgtttatgttatgtatgcatttatcaactttattttttcaagtttacctattctaatttacgatagctatcttttttttctcttctttactcattaataattagaaattgaatttgtatttgaactgcagttagctttaaactcagtaagaactacattgaggtacaatgtaccatataaagtcggggtttcttgattgacatacgacaaatggagagctctgactatgcatcggtctctcaccaaaaaggtatggtaacctcaaaaaaactttccttgaatctgaagacgagagtacttcaataaggaaatttgtgaggagcctgttggccaagaccatcaataggttttgattgaacaaccaatatatagtcattcttgattatatccattaatttccttatttcgtatcatagaataagaatctatactaaaaaaaaatatttgtgaggttataattagcatatactcttagtcatggatacactataagcttccacaaatgttacatctaatatgtatgtgacaaaggatcaattgtacatgtaatggtaagtcccaaatcttacaaattatatcagagacaattaaattttgcccttaattagcagtaaacactcgagaaaagttattttgataccatcatctttatattggcatttgtgatatagcttaatatccaatggcactatcatgatagctaatttatgtcttcctttcctcatattacttgccactggactcgctaatgggttcaaagattaattgacaattaaaatcctcattgtggtccatttaaatctaaagagtatgcaagagtgctatggtttgtgatgttactttttgaaaattgtatcttgattaatgtgttttactttattattatccagtttgttcaagttgtgtgatatatttaggtggcatgctttcgatttttagccctcaaaagaagatggttgtgttattcttcaaaatatagaatcagattttgttatcttgagtcaattgaagcaagtttccaaggtggaaattggaaataatctgtcaaaacatgagaaggttcaaaaacttattatgtaacagtggttagaagctttaagtcgcacatatatttttgtctaatgtatgtaaaaaatataattagatccaaagtgtatatgaacttaaacaattatttgtttaatcaaatatgctgcattagtatatttatcagatcaacattaaagttgcctaaaaaaaaaatacttttaatctttatatttgaattagatgtcgttgaattaaattaattagatttccttttgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78227" stop="76167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77927" g_stop="76482" g_length="1446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1439" r_length="1439" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1453" polyA_stop="1465"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U320078" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>1446</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77927" e_stop="76482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGGCCACAGTTCATATTGTTATGAGTTAGGTCAATTCATTTCTTCACCGTCGTCTCCTCAAAACTCCTCCGCTCTTCTGCTATTTCTATTTCAATAATAGATGTAGATATTGAAAATTCAAGTTCATTTATTTTCCACCTCTCTCTCTCTGGTTTATGTTATGTATGCATTTATCAACTTTATTTTTTCAAGTTTACCTATTCTAATTTACGATAGCTATCTTTTTTTTTTCTTCTTTACTCATTAATAATTAGACATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGA-AACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACT--AAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCATGTAATACTTTTAATCTTTATATTTGAATTAGATGTCGTTGAATTAAATTAATTAG</genome_strand>
        <mrna_strand>TCAAGAGGCCACAGTTCATATTGTTATGAGTTAGGTCTATTCA----TT-----TCGTCTCCTCAAAACTCCTCTGCTCTTCTGCTATTTCTATTTCAATAATAGATGTAGATATTGAAAATTCAAGTTCATTTATTTTCCACCTCTCTCTCTCTCGTTTATGTTATGTATGCATTTATCAACTTTATTTTTTCAAGTTTACCTATTCTAATTTACGATAGCTATCTTTTTTTTCTCTTCTTTACTCATTAATAATTAGAAATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTACCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAGTACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATCAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCCATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAA-AAAAAAAATACTTTTAATCTTTATATTTGAATTAGATGTCGTTGAATTAAATTAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321069" ref_strand="+" ref_description="SGN-U321069        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | aldehyde dehydrogenase, mitochondrial (ALDH3), nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 (Arabidopsis thaliana) gi:19850249:gb:AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein | chr1:8412041-8414868 REVERSE | Aliases: F5O8.35, F5O8_35(evalue: 2e-22, score=97.8) genbank/nr: gi|1743354|emb|CAA71003.1| aldehyde dehydrogenase (NAD+) [Nicotiana tabacum] (evalue: 2e-26, score=113)">
      <seq>tctttgatttttcatcggtacaaattagttttctctctaaatattttcctaatcttgttttggcagtgttcaaaattttcagtaagtagcttgtgccataggcatacaaagcgagaggttgtatctgctagctcaagctaacatatttcgccaaagtagataacatcaattttccgagttgggatttcaaatactgcttttcaaatctcaagaatgttaaaattatcggctgcctttatgacatggttggaggcgtggtctgaagcagagttttgaaaggtcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggtaagtaataagttcaactagaaagaaagtctatcatcaattatttcttctccctgaaaaaaaattatttctacaggctaggtagataaaattcttgatatgactattcctgctgaaggaccatattgtattcaaacgttgcatgaactgattgaatttgttggttagattatctcatgaaattttgctctcctcgtgttctcttggaagatgagccctactttcacttgtggcagaaatatcgtgttaaaaatgctgagcagacccctttaactacactctatgtagaaaatctgttgcaggaggtagcatcaaaattttctcttttattgcccaaaagagtcgttttgcacagtaagtcaagtttcagtttttctggtatcgtatctgagtgaaagaatatgtttttttcttttcaattttagaaaaaatatttcacaacagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80872" stop="78198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80572" g_stop="80458" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80336" g_stop="80180" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="274" r_length="159" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082">
            <donor d_prob="0.409" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79097" g_stop="78498" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="873" r_length="599" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U321069" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80572" e_stop="80458"/>
          <exon e_start="80336" e_stop="80180"/>
          <exon e_start="79097" e_stop="78498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAGGTAAGTTTTTTCTCCTATATGGTGAAAAATTCGCATCTACAAATGTTCATATGCTATTATTAAAATAAGTTTCAAGCTTTTTCTTTATAGATGTTTGAACTTATTGGACCATGATTTGCAGAGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTC-AATCTCAAGAATGTTAAAATTATCGGTTGCC-TTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTTGTAAGCTTTTCGAACCTTTGAGGTTTATATTAAAGAATACAGTGATTTTGCAAAAGTTTGTTATCATAACAATTAAACAAGTGTGCGTTCCGGCATTCATAACGATTGACTAAGAAATTGTTAGACAGTAAAAAATCATCAACAAATTTCGTGATTGTTTATCAAGAGATTGCTTAGCCAACCATTATAAATAATCACGAAATTTGTTGTAGTGTTTCTAGCCGCTGCAACAAATACATATTTATCAACAAAATATAAGGTGTATCTAGCGATTAAGAGTTGCTTTTTGTAGTAGTGTTCTTATTAGGATCATTATGTATGAACTACAACTGAGTTAGAGTTGAGTTTTGATAAGAAAAGTTGGAAGTTGTGGGCATGCTAATTGAAAAACCGCAAGTATCGACTATCGTGAAACAAGCACTTGATAGTTGATCCTGATCTTGTGGGGTTGGTCTTAAATATCTCAGGGTACTTAGTCTATAAGATGGATTCAATAGTTTTTTCTACTGTGGAAATATTGAGAACAGATTTATTCACAACTCTTTTTGGACTTGGATATTGGGCAAACATCCATAGTTTCTAGCACTATTTGAGTATCTGACTGTCCAAATGGTTGCTGGATTATTCCAATCCTCTGGATGTCCTGCAGTAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTTTGGTATCGTATCTGAGTGAAAGAATATGTTTTTTTTCTTTTCAATTCTAGAAAAAATATTCCACAACAGTTGAAG</genome_strand>
        <mrna_strand>TCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGCAGTGTTCAAAATTTTCAGTAAGTAGCTTGTGCCATAGGCATACAAAGCGAG.........................................................................................................................AGGTTGTATCTGCTAGCTCAAGCTAACATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATACTGCTTTTCAAATCTCAAGAATGTTAAAATTATCGGCTGCCTTTATGACATGGTTGGAGGCGTGGTCTGAAGCAGAGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAGTTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGTAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGTATTCAAACGTTGCATGAACTGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTGCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGGTAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTCTGGTATCGTATCTGAGTGAAAGAATATG-TTTTTTTCTTTTCAATTTTAGAAAAAATATTTCACAACAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321070" ref_strand="+" ref_description="SGN-U321070        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | aldehyde dehydrogenase, mitochondrial (ALDH3), nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 (Arabidopsis thaliana) gi:19850249:gb:AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein | chr1:8412041-8414868 REVERSE | Aliases: F5O8.35, F5O8_35(evalue: 3e-26, score=79.3) genbank/nr: gi|1743354|emb|CAA71003.1| aldehyde dehydrogenase (NAD+) [Nicotiana tabacum] (evalue: 4e-30, score=85.9)">
      <seq>actctatcttctatgttctctttgatttttcatcggtacaaattagttttctctctaaatattttcctaatcttgttttggtagtgttcaaaattttcagtaagtaccttgtgccataggcatacaaagcgagaggttgtatctgctagctcaagctaagatatttcgccaaagtagataacatcaattttccgagttgggatttcaaataatgcttttcaatctcaagaatgttaaaattatcggttgccttatgacatggttggaggcgtggtctgaaagagagttttgaaaggtcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgcaacgttcgagacttgggacactgagaagccatatgaacaggctgttaagattggagtacgctggttgtacatccccgttattatgctggctaggcagataaaattcttgatatgactattcctgctgaaggaccatattgcattcaaacgttgcatgaacggattgaatttgttggttagattatctcatgaaattttcctctcctcgtgttctcttggaagatgagccctactttcacttgtggcagaaatatcgtgttaaaaatgctgagcagacccctttaactacactctatgtagaaaatctgttgcaggagatagcatcaaaattttctcttttattgcccaaaagagtcgttttgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80890" stop="78296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80590" g_stop="80458" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80336" g_stop="80180" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="290" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79097" g_stop="78949" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="439" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78948" i_stop="78873" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78872" g_stop="78596" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="716" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U321070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80590" e_stop="80458"/>
          <exon e_start="80336" e_stop="80180"/>
          <exon e_start="79097" e_stop="78949"/>
          <exon e_start="78872" e_stop="78596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTATCTTCTATGTTCTCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAGGTAAGTTTTTTCTCCTATATGGTGAAAAATTCGCATCTACAAATGTTCATATGCTATTATTAAAATAAGTTTCAAGCTTTTTCTTTATAGATGTTTGAACTTATTGGACCATGATTTGCAGAGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTTGTAAGCTTTTCGAACCTTTGAGGTTTATATTAAAGAATACAGTGATTTTGCAAAAGTTTGTTATCATAACAATTAAACAAGTGTGCGTTCCGGCATTCATAACGATTGACTAAGAAATTGTTAGACAGTAAAAAATCATCAACAAATTTCGTGATTGTTTATCAAGAGATTGCTTAGCCAACCATTATAAATAATCACGAAATTTGTTGTAGTGTTTCTAGCCGCTGCAACAAATACATATTTATCAACAAAATATAAGGTGTATCTAGCGATTAAGAGTTGCTTTTTGTAGTAGTGTTCTTATTAGGATCATTATGTATGAACTACAACTGAGTTAGAGTTGAGTTTTGATAAGAAAAGTTGGAAGTTGTGGGCATGCTAATTGAAAAACCGCAAGTATCGACTATCGTGAAACAAGCACTTGATAGTTGATCCTGATCTTGTGGGGTTGGTCTTAAATATCTCAGGGTACTTAGTCTATAAGATGGATTCAATAGTTTTTTCTACTGTGGAAATATTGAGAACAGATTTATTCACAACTCTTTTTGGACTTGGATATTGGGCAAACATCCATAGTTTCTAGCACTATTTGAGTATCTGACTGTCCAAATGGTTGCTGGATTATTCCAATCCTCTGGATGTCCTGCAGTAGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCAC</genome_strand>
        <mrna_strand>ACTCTATCTTCTATGTTCTCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAG.........................................................................................................................AGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTG............................................................................GCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332319" ref_strand="+" ref_description="SGN-U332319        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative, similar to cAMP inducible 2 protein (Mus musculus) GI:4580997, glycerol-3-phosphate transporter (glycerol 3-phosphate permease) (Homo sapiens) GI:7543982; contains Pfam profile PF00083: major facilitator superfamily protein | chr3:17483327-17486198 REVERSE | Aliases: T21L8.170(evalue: 3e-16, score=80.9) genbank/nr: putative(evalue: 2e-14, score=80.9)">
      <seq>agttgcaatggttgggaattagttttgcaaagaagaagttatttataatgggtatttagaattctcacacttctgttgggatattacggggtcattagtcgcatcaatattattgaaatacaaatggggttggtcggtgattgttcctggtatccttattgcttttagtggcatgatagtgttccttttgttacccgtttatccgaaatccattgaatgcaataaagatgaagtgctatctctaggaaaagaagacgaggaagtgaatgaacctctctcgagatcaaactgagaaagaaatcggccgtgggttttagtgaagcacggaggattcccgaagttgtgccatctggtctttgaccttttttttttggtggcttacacatttctctaatgtggttgtcgtacaacactaactggtccatgctgcaggaaagggcaaaagtatgttgcacttggctgaactggttgagaaacataatgatcaaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79829" stop="78737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79529" g_stop="79037" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U332319" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79529" e_stop="79037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGC</genome_strand>
        <mrna_strand>AGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACTGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGGTCCATGCTGCAGGAAAGGGCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333800" ref_strand="+" ref_description="SGN-U333800        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-05, score=53.5)">
      <seq>tttgtgcatatatatgtatttccttcaaattctcttcatcttcattttaggtaattgccggtcaaaatcatgtttacaacgataatgttctttgatatttaatattagaagtaaatcttgaagactattattaaattatcctactctacttaaatagtaggccttttgtttcaagtagcctgcacttatatccattgataatatgttattgtaaataccacgggcttaatatgatgcttataaattaattcagataaaggagataatagtgtgaaggatttctagcaggaaatgaggttgcttgtttcacatggttagtagccttttaatctgtttaacatgaggtaatctacaataaaatgttctacagagaagatcaggaagggaaacaatccactgtctttttacttttagaaactattgctctgtcgaaatactgataattatatgaagttatagcttgaaactaactgaagtttctatgaaatatatattatgcagggattgctgaaacaaaaaaaatatgttaagaaatttgagttgaatatcttgttttatatgaagatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84107" stop="80872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83809" g_stop="83760" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83759" i_stop="81726" i_length="2034">
            <donor d_prob="0.137" d_score="0.88"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81725" g_stop="81172" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="570" r_length="520" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U333800" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.060" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83809" e_stop="83760"/>
          <exon e_start="81725" e_stop="81172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGGCATATATATGTATTTTTTTTAAATTCTCTTCATCTTCATTTTAGGTATGTTTTTATTCCTCCAAATGGATGTGTCTTTAAACATCTCCATTTCACCTTCCTGTTTTAGTACCAGTTTTTTAAAATTTTGATTTTAATTTTTATATTACTTTTGAGTTTTATTTTGTTGCATTATGAGCAAATGTTTGTTTTCCTCCTTTTTCTAAATTATTTCAATAGTGAGTTCAAGAGTTAATTGCAAGTAATTGAGTGCATGGATGAATTTGTACGACTCTACCCCTTTACCAGTATTATATTACTATAATTTGTAGCATCTCAAAAATGATTTGATTCTTATTCATTGTCACTAAAAAGGGTATTTAATGAGGAGTTCAATCCTACGACAATTGAGATGTATGCCATTTAAAATTAGATATACTTGAGAATCTTTATGCAATATTTTACTTGTTTACTCCCATTTGCAGGTTAACTGTTTGGATGATTGTAGTGTTGATATCTTTGATGATCAATCGGTGATTACATTATTAAAGGTAATATTTGCATATCTTTTTTCTCTTGATATATCCCCATGCTTTTCAGTTTTTATCGTGCTTTTAATTTTCTTTTGTTTCATTCAGAGGAGATCCATGATTACCTCATCGTGTTTCTTAGAATATCAAAAGATGCCTTGTTAGATGGTTGGATTTGCACAACATTCAATTGGCTTAGAATAATAGAATGTAATATATAAATAAGATGCTTGTGTTGCCTTCTTTCATTACGCTCTATGATTTTTTAAATGCGGTCATGCGAATTCAACTTAAAATAACGATTTCGCTTCAGCATCTTCGATATCAAATCATATCTTAGAATCTAGGTACAAGTATATTTCATTGAGGTATGTCACATATGATGCTTACTTGGATCAGGTGCAAGGCCCCGAGAAATGGTATCATATAATTTCAACGGAGTGTTAAATATGTTATTTTTTATACTTTTATTATTACTAGGCTACATCGACTGTCTTTTCATTTTTCTTCTCTTAAGTTATGTTTTGGAACATTGTAAAATGTTTGATACCTCACTAATGAATATCTTTTTTCTTTTAATTGGTAGTAATTTCAATGCATTTGCTAATGATTTTTTTTTTTAAAAAAAAAGATTCAGTTAAGAGTTTTGTATAATGTAGATCTTTATATGGGATAGTCTTATTCATGCTATGAGCTTACTTCATTATTCTAGAATACTTTTGAGTTTATGTTGTCTTTTCTATCTGATACCTTTATTTTTGTTTTGTAATTCGTCTGCACCCTTATATGAAATGATGTTGAGAACAATGGTAGAAATCTATGACTATATCTATTGAATCTTACATCAAATTTAATTTTGTTATTTGAAAACACTCAAGTCAAATAGACATTATCTCTAAATTATTTGTATTAAAATAGAGATTCAGGTAACTAATTTGTTGACTTTTGAGTGGAGTTGATGGTGAAAATGATATTTAGAATGTGAAAATAGATCTAATAATTTGTTGAATGTGATATATTGGTATTACCTTTATGTGTATAATAGAAATAAATTTTTGTATTTTAGTTTCTGACCGAACTTTGACTATATGAGTTGCCATTTTAGTCATTTCCTAAGTAAATTTTGAGTTGTTCAAGTAGTGTTTCTCTTGTCTTTTCTTAGACTAGCGCCTCTTCTATAAATAGTTTAGCTACATCTATGTATCTGTATTCTTGCTAGCTTGATTATTTCCGTATGTATATATTGTAATATTTTAACACAATCATTTTATTGAAGTTACGTTATTTGCCTGGTTACAATATTGTTTGTTTTTCTTTGTGATCTTATATGGCTAAATGTTGTATTCTACCGGATTTCATTTTCGGTAAGCTTTTTGTTGGACAACGTACATGTATGACAACTGACATGTTGTTAATTGTATTGTGATAAATTATTATTGTTAGTTAGATATTTGATGGATATTTACTTGAGGTTAGACTTTAATATGTTCTTTAAGGTGACACTCTATTTTTACCATAACTCATTCATCTAATATCACACTAAATAAGAGCTTTTGTTGCTGCCTTTCAGGTAATTGCCGGTCAAAATCATGTTTACAACGATGATGTTCTTTGATATTTAATATTACAAGTAAATCTTGAAGACTATTATTAAATTATCCTACTCTACTTAAATAGTAGGCCTTTTGTTTCAAGTAGCCTGCACTAAATGTTAATATCCATTGATGATATGTTATTGAAAATACCACGGGCTTAATATGGTGCTTATAAATTAATTCAGATAAAGGAGATAATAGTGTGAAGGATTTCTAGCAGGAAATGAGGTTGCTTGTTTCACATGGTTAGTAGCCTTTTAATCTGTTTAACATGATAAGGTAATCTACAATAAAATGTTCCAACTTATGCAATAGGAGTTGCATGTACAGAGAAGATCAGGAAGGGAAACAATCCACTGTCTTCTCACTTTTAGAAACTATTGCTCTGTCGAAATACTGATAATTATATGAAGTTATAGCTTGAAACTAATTGAAGTTTCTATGAAATATATATTATACAGGGATTGCTGAAAC-AAAAAAATATGTTAAGAAATTTGAGTTGAATATCTTGTATTATATGAAGATCAAA</genome_strand>
        <mrna_strand>TTTGTGCATATATATGTATTTCCTTCAAATTCTCTTCATCTTCATTTTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGCCGGTCAAAATCATGTTTACAACGATAATGTTCTTTGATATTTAATATTAGAAGTAAATCTTGAAGACTATTATTAAATTATCCTACTCTACTTAAATAGTAGGCCTTTTGTTTCAAGTAGCCTGCAC------TT-ATATCCATTGATAATATGTTATTGTAAATACCACGGGCTTAATATGATGCTTATAAATTAATTCAGATAAAGGAGATAATAGTGTGAAGGATTTCTAGCAGGAAATGAGGTTGCTTGTTTCACATGGTTAGTAGCCTTTTAATCTGTTTAACATG---AGGTAATCTACAATAAAATGTT----C-TA--------------------CAGAGAAGATCAGGAAGGGAAACAATCCACTGTCTTTTTACTTTTAGAAACTATTGCTCTGTCGAAATACTGATAATTATATGAAGTTATAGCTTGAAACTAACTGAAGTTTCTATGAAATATATATTATGCAGGGATTGCTGAAACAAAAAAAATATGTTAAGAAATTTGAGTTGAATATCTTGTTTTATATGAAGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345522" ref_strand="+" ref_description="SGN-U345522        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcatatctatgtattttctttaaattctcttcatcttcattttaggttaactgtttggatgattgtagtgttgatatatttgatgatcaatcggttattacattattaaaggtaatatttgcatatcttttttctcttgatatatccccatgcttttcagtttttgtcgtgcttttgattttcttttgtttcattcagaggagatccatgattacctcatcgtgtttcttagaatatcaaaagatgcattgttagatggttggatttgcacaacattcaattggcttagaataatagaatgtaatatataaataagatgcttgtgttgctttcttttactacgctctatgattttttaaatgcggtcatgcgaattcaacttaaaataacaatttcgcttcagcatcttcgatatcaaatcatatcttagaatcaagatacaagtatatttcattgaggtatgtcacatctgatgcttacttggatcaggtgcaaggccccgagaaatggtatcatacaatttcaatggagtgttaaatatattatttcttatacttttattattactaggctacatcgactgccttttcatttttcttctcttaacttatgttttggaacattgtaaaatgtttgatacctcactaatgaatatcttttttcttttaattggtaagtaatttcaatgcatttgctaatgaattttttttaaaaaaaaaaagattcagttaagagttttgtataatgtagatctttatatgggatagtcttattcatgctatgagcttacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84104" stop="82294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83804" g_stop="83760" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83759" i_stop="83341" i_length="419">
            <donor d_prob="0.137" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83340" g_stop="82594" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="793" r_length="748" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U345522" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83804" e_stop="83760"/>
          <exon e_start="83340" e_stop="82594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATATATGTATTTTTTTTAAATTCTCTTCATCTTCATTTTAGGTATGTTTTTATTCCTCCAAATGGATGTGTCTTTAAACATCTCCATTTCACCTTCCTGTTTTAGTACCAGTTTTTTAAAATTTTGATTTTAATTTTTATATTACTTTTGAGTTTTATTTTGTTGCATTATGAGCAAATGTTTGTTTTCCTCCTTTTTCTAAATTATTTCAATAGTGAGTTCAAGAGTTAATTGCAAGTAATTGAGTGCATGGATGAATTTGTACGACTCTACCCCTTTACCAGTATTATATTACTATAATTTGTAGCATCTCAAAAATGATTTGATTCTTATTCATTGTCACTAAAAAGGGTATTTAATGAGGAGTTCAATCCTACGACAATTGAGATGTATGCCATTTAAAATTAGATATACTTGAGAATCTTTATGCAATATTTTACTTGTTTACTCCCATTTGCAGGTTAACTGTTTGGATGATTGTAGTGTTGATATCTTTGATGATCAATCGGTGATTACATTATTAAAGGTAATATTTGCATATCTTTTTTCTCTTGATATATCCCCATGCTTTTCAGTTTTTATCGTGCTTTTAATTTTCTTTTGTTTCATTCAGAGGAGATCCATGATTACCTCATCGTGTTTCTTAGAATATCAAAAGATGCCTTGTTAGATGGTTGGATTTGCACAACATTCAATTGGCTTAGAATAATAGAATGTAATATATAAATAAGATGCTTGTGTTGCCTTCTTTCATTACGCTCTATGATTTTTTAAATGCGGTCATGCGAATTCAACTTAAAATAACGATTTCGCTTCAGCATCTTCGATATCAAATCATATCTTAGAATCTAGGTACAAGTATATTTCATTGAGGTATGTCACATATGATGCTTACTTGGATCAGGTGCAAGGCCCCGAGAAATGGTATCATATAATTTCAACGGAGTGTTAAATATGTTATTTTTTATACTTTTATTATTACTAGGCTACATCGACTGTCTTTTCATTTTTCTTCTCTTAAGTTATGTTTTGGAACATTGTAAAATGTTTGATACCTCACTAATGAATATCTTTTTTCTTTTAATTGGT-AGTAATTTCAATGCATTTGCTAATGATTTTTTTTTTTAAAAAAAAAGATTCAGTTAAGAGTTTTGTATAATGTAGATCTTTATATGGGATAGTCTTATTCATGCTATGAGCTTACTTC</genome_strand>
        <mrna_strand>GCATATCTATGTATTTTCTTTAAATTCTCTTCATCTTCATTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTGTTTGGATGATTGTAGTGTTGATATATTTGATGATCAATCGGTTATTACATTATTAAAGGTAATATTTGCATATCTTTTTTCTCTTGATATATCCCCATGCTTTTCAGTTTTTGTCGTGCTTTTGATTTTCTTTTGTTTCATTCAGAGGAGATCCATGATTACCTCATCGTGTTTCTTAGAATATCAAAAGATGCATTGTTAGATGGTTGGATTTGCACAACATTCAATTGGCTTAGAATAATAGAATGTAATATATAAATAAGATGCTTGTGTTGCTTTCTTTTACTACGCTCTATGATTTTTTAAATGCGGTCATGCGAATTCAACTTAAAATAACAATTTCGCTTCAGCATCTTCGATATCAAATCATATCTTAGAATCAAGATACAAGTATATTTCATTGAGGTATGTCACATCTGATGCTTACTTGGATCAGGTGCAAGGCCCCGAGAAATGGTATCATACAATTTCAATGGAGTGTTAAATATATTATTTCTTATACTTTTATTATTACTAGGCTACATCGACTGCCTTTTCATTTTTCTTCTCTTAACTTATGTTTTGGAACATTGTAAAATGTTTGATACCTCACTAATGAATATCTTTTTTCTTTTAATTGGTAAGTAATTTCAATGCATTTGCTAATGAATTTTTTTTAAAAAAAAAAAGATTCAGTTAAGAGTTTTGTATAATGTAGATCTTTATATGGGATAGTCTTATTCATGCTATGAGCTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315403" ref_strand="+" ref_description="SGN-U315403        Tomato 200607 #1 [41 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcription initiation factor-related, contains weak similarity to Transcription initiation factor IIE, beta subunit (TFIIE-beta) (Swiss-Prot:P29084) (Homo sapiens) | chr4:10982528-10984526 REVERSE | Aliases: F9F13.2, F9F13_2(evalue: 2e-77, score=286) genbank/nr: hypothetical(evalue: 5e-97, score=357)">
      <seq>ttaaaggcccaaacccccctctccccgatcattgctctctgttaatcgacgccgtggtcgagtcccgccgtccatcccggacgttttctccggctaattcttcatctctattgtgtctatccaagatggcatcacttcaagaaagcttgcaaaggttcaagaagcagcaagagaagtgccaagctattactagtatggctgccagagcaggaccttccaagggagctcctccaaggccagctaatgcaaaacctcctgcacctgcagtcaaattttcaaatgacacggaaaggctccagcatataaatactataaggaaagggcctgttgggtctcagatgaaacgtgtcatagacttgcttctggagacaaggcaagctttcacaccagaacagatcaatgaagcatgttatgttgatttaattggcaataaacctgtgtttgacagtttgaggaaaaacgtcaaagtatattatgatggcaatcgcttttcttataagtcgaaacatgctctgaaaaataaagagcaactacttatcttgataagaaaattccctgagggtattgctgttatcgacctcaaggatgcatacccgactgtcatggaggacctgcaggctctcaaaggtgctggtcaaatatggctgctgtcaaattttgactcccaggaagacatcgccttcccaaatgatccacgagtacccattaaggttgatgatgatttgaaacagctattcagaggtattgaattaccacgtgacatgcttgatatcgaaagggatctgcagaagaacgggatgaaacctgctaccaacactgcaaagagaagggcaatggcacaagtccatggcattgctcccaagcccaaaaccaaaaagaagaagcatgagattagcaagaggactaagcttacaaatgctcatcttccagaactcttcaaactttagatatctattggttcataaacttctcccgaatagaaaacaagcactggagttcctcctctcctttccagattctgttgtctagtgactgaaccttgaatacctaatgctttaccatacgtctagcatgaagagttctttacgaatggctaaagccttggtgtttggttcctattcacaaggttgtgttttgtttttactgacctggtaaacttggggtgggaatatgatactaataatttgtgattttattactgacttgggtttttggaccatcaaattgttatgttcatgaagatcaacatcattttgtatcatattgtttaatatcaatatatattacgattaaaattaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="+" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83997" stop="88127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84297" g_stop="84421" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85352" g_stop="85594" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="368" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86709" g_stop="86840" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="500" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86956" g_stop="87072" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="617" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87143" g_stop="87823" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="1298" r_length="681" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1299" polyA_stop="1318"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="+" ref_id="SGN-U315403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1298</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84297" e_stop="84421"/>
          <exon e_start="85352" e_stop="85594"/>
          <exon e_start="86709" e_stop="86840"/>
          <exon e_start="86956" e_stop="87072"/>
          <exon e_start="87143" e_stop="87823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAGGTCAAGACCATATCTTTTTGTGTTTATTGTCTTTTTTTTGGAAGCTTATTTCTTGTGCTTCTTATTGCGATTGGGCCTGAATAGAGCGAATTGGTTACAGAGGATTCATATAGGGAATCCAAACTAGTTTTGGATTCAGAATCCAAACTAGTTTTGGATTCAGATTTAGTTGCTTAATCGAACGATTGAATCATTGTTTCGATTGGGCATGAATAGAAAAAGGAAATAGGTCAAGAATATTACTGATTCGTAGAGTTCATTTTTTCTGGAAACGAAATACTGTATATATGATTTAAACGGTGATGTTTTAAAGATAATTTGATGATACATATAGCATTCTACATGATGTGATTTTGCCCTGCTGTGTATACTAACGTGTAGTTCTAATAGTTCAAAGACAAATAATGGGACATTTATTAGATAACAGTATTAACCAGTTCTCTATGAGAAAGAGAGAGACTTGGGGTACCTGATGACTATGTTGACAAAGCAAAAGTATGAAGAAAGTTATTGAATTTTCATGTGATTCTGATATACCTCAGTGCAAAACAGGATGAAGTGACTTCTTTGTTGAACATATTGTTAGTATACATTGGGTGTTAAAGTGTTATACTTCCTAAATGATGTTGATTGGCATGTTTGTTCCTTAATACAAGTTGATGCATCTTTGGATGACTTGAAAAGAAAAGTAGGTAAGGTACTTGAGAAGAGGGATTGTATAAGTTGGCCACTTTTTGACGGAAGAAATTCACTTTTTATAAATCTGTGTTGAGTTGCAGAAAATACCTCAAGTTACGAGGGGAAGCTTAAATGTTACTTCTGGAAAAACTTGTACTTGTTAGGATTCTTCATTCACTCAGTTATGCAGTGGTTTGTTTAATGTCTTTGCCTGGCTAGCATTTTCTTATGGAAGCTTTCTATTTTTACCAGATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAGGTATATGGCCACCACTTCTTTTCTCATTGTTTTTCAATCCCTCTTTAATTATATTTCTAAATTAAAAGAGCTATGATGCAGCTAATTTAACTTAGCACCTAGAAGCAAGTGTCAAAACTGCTAAATCTCTAAATTTATCCCACAGCAAAATAGCTTAGGATTAAGCTACCGACAGAGTTAGAACTAAGGAGCAATTTAACTTTGCTTACTGGTTGGCAGTCAAAACTTATTATCTGGTTGAGATCAGATCGAAAACCTTGTGGCAATCGTCCTAGATCTATGACTAGGTCTACCACTGAGGACTCTTGCGATGTTGGATGGTGCAATTTATTTGATCCAAAGTGCTTTTATTGGGGCACATCAAACAAGAAATGGACAGATGTTCTAAATACTGCAGTTTCAGTGGAGGGCTTTTGATGTTCTGGGAATTATTTTTGAGGGATGTCTCATGTAGTTTGTTGTACTATCGTATATTTATTTCATCCCGTGTTGGAGTAGTACAAATGTTTAATTCTATTACTAGATAGTTCAAGTTTCTAGAGTATCAACCATTTATTAGTAGTTGCAAGATCTACTTGAAGCTAGAGGTGGATGCTTGCATTATTAGCTGGAGTAATGGATTTGGTGATTATGATTTATCTCTTCTTTTAGCAGGACATATGTAATTAACTAAATATCATGTGAATTGACTTCAGGGTGCCATATTTATTACCTGGCACTACAGCACAACCGCATAAGTCATATCCGGCAGTTTTTCATCTTTTAGCTTCAAGTTGCTAGATTTTATTTGTGTATAATATTGTTTCGTTCTTCTTCCTTGATGCTACTGGACATTAACTACGTAGAATTACCGCAAAATTAAGACACCAAATGTGCTTAATACAACAGTAATGATGGCTGAATCGAGAACTGATTCAGCACTAATCTGTAGGTTCTTAATAATTCGAAAATCTGACATGGTCATTCCCCAGGAATTTTGTGTAACTCTCCATTTTAGCTGGATTCTCCACCTTGATTAATAGTGTCTTGTCCTGTTATCTTATAGGGAACTGTGACATATTCTGTAGTCGTAGTACTTGTAATATTGATAACTAATTAATTTCCATACATGCAGACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAGGTAAATTAAGGTCTTCTTAATTGTACTCCTCTGTCTTTAAGTCATTTGTAATCAACTCTGAATCTGTGTGTCTTTACTCTTTAGTAACATAAATTCACTTATTATTTGTCAACAGTCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAGGTATTTCTCATACCAAGCTACTTTTGAGTTATTTGCTTTCAATGTACTGATACACAGGTATTTCCTATAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTA</genome_strand>
        <mrna_strand>TTAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG...................................................................................................................TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG......................................................................GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344943" ref_strand="-" ref_description="SGN-U344943        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | carbon-nitrogen hydrolase family protein, similar to Nit protein 2 (Homo sapiens) GI:9367116; contains Pfam profile PF00795: hydrolase, carbon-nitrogen family | chr5:3885155-3888055 FORWARD | Aliases: F14F18.210, F14F18_210(evalue: 3e-11, score=65.9) genbank/nr: gi|22326744|ref|NP_196765.2| expressed protein [Arabidopsis thaliana] gi|19715574|gb|AAL91613.1| AT5g12040/F14F18_210 [Arabidopsis thaliana] gi|20147243|gb|AAM10335.1| AT5g12040/F14F18_210 [Arabidopsis thaliana](evalue: 2e-09, score=65.9)">
      <seq>ggtcactccacgtggtggaccgatgggtaaaattattgcaaccactgggcatgaggaagcagctctaattgctgaaattgattatgctgcgattcaatggacaagggaaagcctccctttggagagccagaagcgcaacgacatctatcaattcgtagacttgctcagagaaagtctcaactcctaagaggctttaagagcaggacatcttgatcagctagcatatcatagttctgaaataggtatttgtgggagttcttaccaagaaagttgttttgcttattttgttggcaatcatggttgtatcttctttttatggtcattccaaaagacattagttaacaaatctggtaaagtttggcatctcttcaagacactaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88905" stop="87858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88706" g_stop="88683" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88682" i_stop="88596" i_length="87">
            <donor d_prob="0.859" d_score="0.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88595" g_stop="88513" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="105" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88512" i_stop="88433" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88432" g_stop="88159" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="379" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="400"/>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U344943" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344943" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88706" e_stop="88683"/>
          <exon e_start="88595" e_stop="88513"/>
          <exon e_start="88432" e_stop="88159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCACTCCACTGTGGTTGGACCGGTATGTTATGATATTACTAGTAGTTACTTTGGATTGCAGAGGTCTGTATAGAACGATCAAAGAGCTCTTTGTTTTTCTGGTTAGCAGATGGGTAAAATTATTGCAACCACTGGGCATGAGGAAGCAGCTCTAATTGCTGAAATTGATTATGCTGCGATTCAATGGACAAGGTGATGCATCATCTCGTTTAAAGATCGATTAGTAGTAGATCTTTACTTCTTTTTTCTCACTCTTTTCAAAGCTCGTGCAGGGAAAGCCTCCCTTTGGAGAGCCAGAAGCGCAACGACATCTATCAATTCGTAGACTTGCTCAGAGAAAGTCTCAACTCCTAAGAGGCTTTAAGAGCAGGACATCTTGATCAGCTAGCATATCATAGTTCTGAAATAGGTATTTGTGGGAGTTCTTACCAAGAAAGTTGTTTTGCTTATTTTGTTGGCAATCATGGTTGTATCTTCTTTTTATGGTCATTCCAAAAGACATTAGTTAACAAATCTGGTAAAGTTTGGCATCTCTTCAAGACACTT</genome_strand>
        <mrna_strand>GGTCACTCCAC-GTGG-TGGACCG.......................................................................................ATGGGTAAAATTATTGCAACCACTGGGCATGAGGAAGCAGCTCTAATTGCTGAAATTGATTATGCTGCGATTCAATGGACAAG................................................................................GGAAAGCCTCCCTTTGGAGAGCCAGAAGCGCAACGACATCTATCAATTCGTAGACTTGCTCAGAGAAAGTCTCAACTCCTAAGAGGCTTTAAGAGCAGGACATCTTGATCAGCTAGCATATCATAGTTCTGAAATAGGTATTTGTGGGAGTTCTTACCAAGAAAGTTGTTTTGCTTATTTTGTTGGCAATCATGGTTGTATCTTCTTTTTATGGTCATTCCAAAAGACATTAGTTAACAAATCTGGTAAAGTTTGGCATCTCTTCAAGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333077" ref_strand="+" ref_description="SGN-U333077        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | carbon-nitrogen hydrolase family protein, similar to Nit protein 2 (Homo sapiens) GI:9367116; contains Pfam profile PF00795: hydrolase, carbon-nitrogen family | chr5:3885155-3888055 FORWARD | Aliases: F14F18.210, F14F18_210(evalue: 4e-84, score=307) genbank/nr: gi|22326744|ref|NP_196765.2| expressed protein [Arabidopsis thaliana] gi|19715574|gb|AAL91613.1| AT5g12040/F14F18_210 [Arabidopsis thaliana] gi|20147243|gb|AAM10335.1| AT5g12040/F14F18_210 [Arabidopsis thaliana](evalue: 3e-82, score=307)">
      <seq>gcaacagttgctgttcagtcctttgtctctgctccactgcaaattcccaatgtaacacagttcaagattggaatttgtcagctgatagttaccacagagaagagtgcaaacatcttcaatgctcgtagtctgattcaaactgctgcagaacaaggtgcaactcttatacttttgcctgaaatgtggaattgcccttattcaactgacttgttcgcaaagtttgctgaggagttcagcgatatagacagtgccccatcattgcttatgttatctgaagtggcttcttccttaggagtcaccattataggtggatcgattccggaaaaggatgctggtcagctgtacaatagctgccctgtgtttgggcctaatggagagttgaaggctaagcacagaaaaatacatttgtttgacatgggtaagccacttccgggagaggtccaatttaaggaatcagttaacatttcagcaggagagaagcctacagttgttgatacagattttggacgcattggaataggaatttgtcatgatatacgatttcctgagctggcaatgtcatacagtgcccgaggtgctcatttaatatgttaccctggagcattcaacatgagtactggggcaaccctgtgggaactggagcanagaacaagggcagtagataaccagctttatgtggcatcttgctccctgtctcgagattcagccagtagctacatgatatggggtcactccactgtggttggaccgatgggtaaaattattgcaaccactgggcatgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0097J14-QF3vp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLe0097J14.1" temp_strand="-" temp_description="C06SLe0097J14.1  AC232860.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0097J14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91726" stop="88260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91426" g_stop="91367" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91366" i_stop="91295" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91294" g_stop="91178" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="177" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91177" i_stop="90295" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90294" g_stop="90073" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="399" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90072" i_stop="89776" i_length="297">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89775" g_stop="89676" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="499" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89675" i_stop="89286" i_length="390">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89285" g_stop="89211" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="574" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89210" i_stop="89133" i_length="78">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89132" g_stop="89054" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="653" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89053" i_stop="88873" i_length="181">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88872" g_stop="88857" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="669" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88856" i_stop="88764" i_length="93">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88763" g_stop="88683" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="750" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="88682" i_stop="88596" i_length="87">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="88595" g_stop="88560" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="786" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0097J14.1" gen_strand="-" ref_id="SGN-U333077" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0097J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91426" e_stop="91367"/>
          <exon e_start="91294" e_stop="91178"/>
          <exon e_start="90294" e_stop="90073"/>
          <exon e_start="89775" e_stop="89676"/>
          <exon e_start="89285" e_stop="89211"/>
          <exon e_start="89132" e_stop="89054"/>
          <exon e_start="88872" e_stop="88857"/>
          <exon e_start="88763" e_stop="88683"/>
          <exon e_start="88595" e_stop="88560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAATGTAACACAGGTCTGTTTTTCTTTTAAAATACCCTTTTGGTTTCTCCATCCAAAACATGACATTTTTTTTTAATAAAAACAGTTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTTATACTTTTGCCTGTGAGTAGCCTTTTCCTTCACTTAAACTCTTTTTAATTTTAGCTTTAAAGGGTGTTTTTGCTATGAAGGAAAATGTTCCTTTTAGGAAAAAAAGAAGGGGCTTTACTAATCCTAGAAGTATTTGTATATAATTTAGAGAAATACAGGGAGGACACGAGGGCATGGGTGGTGAGGATGGAGGTGAAGATGTGTTGAGTTGGAGGGCGGAAAGAACACAATCAATGTTGAGTGTCACATGTGAAGCTTGTTTCCCCTAGTTCTATCAACGAATTAACACAATCATTCTTCAGCTTCTCTCGTGTTTTCGTTATTTTTGACCCTCCTTGTTCATTTTTTCTTTTACATAATTTCTTTTGATAAATCTCATGCTGATTTATAAACTAAATGTAAAAAGTTGCACGTTATAATTTGTCCAATTTTAACTAATCAGACACTGTTGCATACGTTAACAACATGCACTTCATAAGACATTTACGCCTCAGTTGGTTTTAAGTAATTTGTCTATGCAATTGTTTACCCTGTTTGTGTATAAAACTTGAATTCTAAAAGAAGTTTGTTATATTTTTGGTTTTAGATCATCCATGCCTTTTACCTCTTTTACTCTTTGTTTATTCACTGTGGAAGTCTAGCATAGTGATTTGACCTTAACATGTTGACTAGCACATTGTTATTATTTCCAGAATAACGTTTGATGCTGTTGGCAGTTCTTTGTCTTCTTTCCGGCTATAGTTTTAAGAATGAAACTTTATATGAATTCTCATAAGTTCGGAAAGTATCAGCCTAAAGAAGTTCCTATCTGAAGATTGAAAACATATGGTCAAAGTGTATATCTTAATAGCAATGTTGGATGTGAGATTCAGTGTATTTCAATAATTTGTTGTAGGAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAAGTAAGCTTTTTCTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGCACAGAAAAGTAAGCTTTTTTTAATTAGAAGATAGAGAAGTCTATAACGAAGAACACATCTTTCACTTTTCTGATTAGTGTTAAGCTAGTTCTCAAATGCTTTATGAAAGTGAAAGAATGAATATAATGATAAACTTTGGTTGCACCGAAAAGAAGTTAAAACAGGTGATTGGATGAAGAGAATAGCAAGATGAGCTAGAATTGTAATTGTGCAATGCCTTTCCGCAGATACATTTGTTTGACATGGGTAAGCCACTTCCGGGAGAGGTCCAATTTAAGGAATCAGTTAACATTTCAGCAGGAGAGAAGCCTACAGTTGTTGATACAGGTAGGTACAGGTAGGCAACTGTTTCCTGCTTAATGCATTGACTTCTAAGTTTGGTAACTTACAGTTTTAGTATGATCCATAGGTCCTTGAGGATATGATGTAATTCTTCTGTCTCTCAAATGTGAAACGTATCAACATTTTCTGTATCAGGAATCTCAAAAAATTAGCAGAAAAATGAGAAACTGTTATTCCTGCATCTGGCATGTTCATATATACATGTTGACATTTTCTCTACTCCCAATTCTGATTTAGGTCTCATTTTTTCCCGGCCAAACTTGTGTTGCTAGTAGTTTCAGCTTGCACTAAGATTCTTTCTTTAATTTCCCTGCCAGGCTTCCTACTTGAAACTGTACTTTTACAAGTCTTATAACGGAAAACTTCAATCTGCAGATTTTGGACGCATTGGAATAGGAATTTGTCATGATATACGATTTCCTGAGCTGGCAATGTCATACAGTGCCCGAGGTATGATGGTTTACATGCTTAAGTAGTTAGTAATCCTGTTCAACTAATTTTTCTCCTTAATTTTCATATGAGGATCAGGTGCTCATTTAATATGTTACCCTGGAGCATTCAACATGAGTACTGGGGCAACCCTGTGGGAACTGGAGCAAAGAACAAGGCAAGATGATTCTGTTTCGTGTAGTTGTAAATAGAGTTACCAATAAAGGTTTTCTTAAGTTCTTTAGTGTATATCAGTAAAGAGCGACCAATGCAGTTGCACACACTTATAGAATCAGGAACTCCGAATTTGCAAAGTTGTGTGCTGTATTCTTATTGCTCATTCAACTCCGATTTTGCAGGGCAGTAGATAACCAGGTAATACCATGTTGATTTATGATGATAGTCCTCTTTGTCTTTATGTGGCATCCTGCTCCCCATTGCGAAGCATGTTCACTGCATTTTTCGTAGCTTTATGTGGCATCTTGCTCCCTGTCTCGAGATTCAGCCAGTAGCTACATGATATGGGGTCACTCCACTGTGGTTGGACCGGTATGTTATGATATTACTAGTAGTTACTTTGGATTGCAGAGGTCTGTATAGAACGATCAAAGAGCTCTTTGTTTTTCTGGTTAGCAGATGGGTAAAATTATTGCAACCACTGGGCATGAGGAA</genome_strand>
        <mrna_strand>GCAACAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAATGTAACACAG........................................................................TTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTTATACTTTTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAA.........................................................................................................................................................................................................................................................................................................ATACATTTGTTTGACATGGGTAAGCCACTTCCGGGAGAGGTCCAATTTAAGGAATCAGTTAACATTTCAGCAGGAGAGAAGCCTACAGTTGTTGATACAG......................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGACGCATTGGAATAGGAATTTGTCATGATATACGATTTCCTGAGCTGGCAATGTCATACAGTGCCCGAG..............................................................................GTGCTCATTTAATATGTTACCCTGGAGCATTCAACATGAGTACTGGGGCAACCCTGTGGGAACTGGAGCANAGAACAAG.....................................................................................................................................................................................GGCAGTAGATAACCAG.............................................................................................CTTTATGTGGCATCTTGCTCCCTGTCTCGAGATTCAGCCAGTAGCTACATGATATGGGGTCACTCCACTGTGGTTGGACCG.......................................................................................ATGGGTAAAATTATTGCAACCACTGGGCATGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7065" PGL_stop="6437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7065" e_stop="7024"/>
            <exon e_start="6849" e_stop="6437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7065" e_stop="7024" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7023" i_stop="6850" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6849" e_stop="6437" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7065" stop="7024"/>
              <exon start="6849" stop="6437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340895" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAGTATTTGCAGATAGCATTCATAATCCAACAAAATACG : GTTTTAAGATATCAGAGACGGCTTGTTGTGGAACTGGTCCGTTTCGAGGGATTCTTAGTTGTGGAGGGAAGAGGCAGGTAAAAGAGTATGAGTTATGTAAGAATGTGAAAGACTACTTGTTTTTTGACTCTGTTCATCCCAGTGAACTGGCCTACCAACAATACGCTGCATTACTGTGGAATGGAACTACAGATGTCGTAGCACCTCACAACCTAAAATCCTTTTTTGAAAGTTCGAACTCCAGATGTCCTAGCAGCTTACAATTCCTACTATATATGAAGAATAAACAACAATGTGAAATATGATGTTAAGGAGCTTCATCTCTAGTAATTTTTCTGTTCTTGTGTAATCAAATATTTTGGCTGTACGCTCTCGTGCTTAAATAATCTAGAACTTCTTGACTGCCATGTGTA</gDNA_template>
            <first_frame> S  K  Y  L  Q  I  A  F  I  I  Q  Q  N  T  :  V  L  R  Y  Q  R  R  L  V  V  E  L  V  R  F  E  G  F  L  V  V  E  G  R  G  R  *  K  S  M  S  Y  V  R  M  *  K  T  T  C  F  L  T  L  F  I  P  V  N  W  P  T  N  N  T  L  H  Y  C  G  M  E  L  Q  M  S  *  H  L  T  T  *  N  P  F  L  K  V  R  T  P  D  V  L  A  A  Y  N  S  Y  Y  I  *  R  I  N  N  N  V  K  Y  D  V  K  E  L  H  L  *  *  F  F  C  S  C  V  I  K  Y  F  G  C  T  L  S  C  L  N  N  L  E  L  L  D  C  H  V   </first_frame>
            <second_frame>  Q  S  I  C  R  *  H  S  *  S  N  K  I  R :   F  *  D  I  R  D  G  L  L  W  N  W  S  V  S  R  D  S  *  L  W  R  E  E  A  G  K  R  V  *  V  M  *  E  C  E  R  L  L  V  F  *  L  C  S  S  Q  *  T  G  L  P  T  I  R  C  I  T  V  E  W  N  Y  R  C  R  S  T  S  Q  P  K  I  L  F  *  K  F  E  L  Q  M  S  *  Q  L  T  I  P  T  I  Y  E  E  *  T  T  M  *  N  M  M  L  R  S  F  I  S  S  N  F  S  V  L  V  *  S  N  I  L  A  V  R  S  R  A  *  I  I  *  N  F  L  T  A  M  C  </second_frame>
            <third_frame>   K  V  F  A  D  S  I  H  N  P  T  K  Y   : G  F  K  I  S  E  T  A  C  C  G  T  G  P  F  R  G  I  L  S  C  G  G  K  R  Q  V  K  E  Y  E  L  C  K  N  V  K  D  Y  L  F  F  D  S  V  H  P  S  E  L  A  Y  Q  Q  Y  A  A  L  L  W  N  G  T  T  D  V  V  A  P  H  N  L  K  S  F  F  E  S  S  N  S  R  C  P  S  S  L  Q  F  L  L  Y  M  K  N  K  Q  Q  C  E  I  *  C  *  G  A  S  S  L  V  I  F  L  F  L  C  N  Q  I  F  W  L  Y  A  L  V  L  K  *  S  R  T  S  *  L  P  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7063" stop="7024"/>
                    <exon start="6849" stop="6545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVFADSIHNPTKYGFKISETACCGTGPFRGILSCGGKRQVKEYELCKNVKDYLFFDSVHPSELAYQQYAALLWNGTTDVVAPHNLKSFFESSNSRCPSSLQFLLYMKNKQQCEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8137" PGL_stop="7270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8137" e_stop="7908"/>
            <exon e_start="7836" e_stop="7715"/>
            <exon e_start="7630" e_stop="7412"/>
            <exon e_start="7288" e_stop="7270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8137" e_stop="7908" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7907" i_stop="7837" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7836" e_stop="7715" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7714" i_stop="7631" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7630" e_stop="7412" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.969">
            <gDNA_intron_boundary i_start="7411" i_stop="7289" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="0.947">
            <gDNA_exon_boundary e_start="7288" e_stop="7270" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="7908"/>
              <exon start="7836" stop="7715"/>
              <exon start="7630" stop="7412"/>
              <exon start="7288" stop="7270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAGTTTGTGCATCTTTGTTTTGGTTACACACTTTGCCACACCAATTGTGTGCCATGAAAGAGCTGCCCTTTTTGTGTTCGGTGATTCGGTTTTCGATTCTGGAAATAATAAGTACATCAACGCCACTGCTGACTTGCAGGGAAGTAATTACTTTCCTTATGGAGAATCATTCTTTAAGCATCCTACTGGCAGGGTGTCTAATGGACGCCTTATTCCTGATTTTATCG : CTGAATATGCTAATTTGCCATTTATTCCGCCCTACTTTGAAATTGGGAAGAAACAATTGATTCATGGGGTAAACTTTGCATCAGCCGGTTCTGGTTGTTTGGCGGAAACTAGTGGTGCCATT : GTTCTAAAAACTCAGTTGAAGAATTTTGAAAATGTGATACAACTGTTGAAGAGGAAAATGGGGAAAACAGAGTCCCATAAAATCCTGGCAAATGCAGTATATATTTTTAGCACTGGTAGCAATGACATGTTTGCCTCTTTAGTACCAAATTCGACTTTTCCATATTCCGATAGAGAATATCTACAGATGATTATGGGCAACTTGACTTCTGTTTTAAAG : GGAGTTTATAAAGGAGGAG</gDNA_template>
            <first_frame> L  K  F  V  H  L  C  F  G  Y  T  L  C  H  T  N  C  V  P  *  K  S  C  P  F  C  V  R  *  F  G  F  R  F  W  K  *  *  V  H  Q  R  H  C  *  L  A  G  K  *  L  L  S  L  W  R  I  I  L  *  A  S  Y  W  Q  G  V  *  W  T  P  Y  S  *  F  Y  R :   *  I  C  *  F  A  I  Y  S  A  L  L  *  N  W  E  E  T  I  D  S  W  G  K  L  C  I  S  R  F  W  L  F  G  G  N  *  W  C  H   : C  S  K  N  S  V  E  E  F  *  K  C  D  T  T  V  E  E  E  N  G  E  N  R  V  P  *  N  P  G  K  C  S  I  Y  F  *  H  W  *  Q  *  H  V  C  L  F  S  T  K  F  D  F  S  I  F  R  *  R  I  S  T  D  D  Y  G  Q  L  D  F  C  F  K   : G  S  L  *  R  R   </first_frame>
            <second_frame>  S  S  L  C  I  F  V  L  V  T  H  F  A  T  P  I  V  C  H  E  R  A  A  L  F  V  F  G  D  S  V  F  D  S  G  N  N  K  Y  I  N  A  T  A  D  L  Q  G  S  N  Y  F  P  Y  G  E  S  F  F  K  H  P  T  G  R  V  S  N  G  R  L  I  P  D  F  I   : A  E  Y  A  N  L  P  F  I  P  P  Y  F  E  I  G  K  K  Q  L  I  H  G  V  N  F  A  S  A  G  S  G  C  L  A  E  T  S  G  A  I  :  V  L  K  T  Q  L  K  N  F  E  N  V  I  Q  L  L  K  R  K  M  G  K  T  E  S  H  K  I  L  A  N  A  V  Y  I  F  S  T  G  S  N  D  M  F  A  S  L  V  P  N  S  T  F  P  Y  S  D  R  E  Y  L  Q  M  I  M  G  N  L  T  S  V  L  K  :  G  V  Y  K  G  G  </second_frame>
            <third_frame>   Q  V  C  A  S  L  F  W  L  H  T  L  P  H  Q  L  C  A  M  K  E  L  P  F  L  C  S  V  I  R  F  S  I  L  E  I  I  S  T  S  T  P  L  L  T  C  R  E  V  I  T  F  L  M  E  N  H  S  L  S  I  L  L  A  G  C  L  M  D  A  L  F  L  I  L  S  :  L  N  M  L  I  C  H  L  F  R  P  T  L  K  L  G  R  N  N  *  F  M  G  *  T  L  H  Q  P  V  L  V  V  W  R  K  L  V  V  P  L :   F  *  K  L  S  *  R  I  L  K  M  *  Y  N  C  *  R  G  K  W  G  K  Q  S  P  I  K  S  W  Q  M  Q  Y  I  F  L  A  L  V  A  M  T  C  L  P  L  *  Y  Q  I  R  L  F  H  I  P  I  E  N  I  Y  R  *  L  W  A  T  *  L  L  F  *  R :   E  F  I  K  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8136" stop="7908"/>
                    <exon start="7836" stop="7715"/>
                    <exon start="7630" stop="7412"/>
                    <exon start="7288" stop="7271"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLCIFVLVTHFATPIVCHERAALFVFGDSVFDSGNNKYINATADLQGSNYFPYGESFFKHPTGRVSNGRLIPDFIAEYANLPFIPPYFEIGKKQLIHGVNFASAGSGCLAETSGAIVLKTQLKNFENVIQLLKRKMGKTESHKILANAVYIFSTGSNDMFASLVPNSTFPYSDREYLQMIMGNLTSVLKGVYKGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14543" PGL_stop="13463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14543" e_stop="14378"/>
            <exon e_start="14233" e_stop="13463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14543" e_stop="14378" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14377" i_stop="14234" i_length="144"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="14233" e_stop="13463" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14543" stop="14378"/>
              <exon start="14233" stop="13463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATGGGTGAAACAGAGTCGAAACAGATCCTCTCCAACGCTGTATATATTTTCAGCCCTGCCAATAATGATTTCCTTTTCCCTTTCTTAGCAAATTTGACTTCTCCATATTCCGATACAGAATATCAACAGATGGTTATGGGAAATTTGACTTCTGTTTTGAAG : GGAATTTACAAGGAAGGAGGGAGAAAGTTTGTGATGTTTAATGTGGCTCCATTAGGATGTGTTCCTTCTATGAGGGCTCTCAACCTTCAAAAAGGAGTTACGAATGGGAGTTGTATGGAGGAAGCAACAGACAAAGCGAAGACGTTTAATTCAGCTCTCCCAAGAATGTTTAAAAAACTAGAGAAGCAATTGCCTGGATTTAAGTATACAATATTCAACTTCTTCAAAGTATTTGCAGATAGCATTAATAATCCAACAAAATATGGTATCTTCTATCTCATTGAATTCAAAATCAAGTATCTTTATGTTCGATTATATATTGTGCAGTGTTGATTTATGTAAGAATAGCTGTTTTACCAAGAGTTTACTAATGTACAATAAGTATCAACAGGAATTGGTAGTAAGTAATCTTTTATCTTTAACCAAATTTCTCGGCTCGAGAAATGGTATGAAATCGCGTTTGTTAAGGAGCGTATGTAGGACTTCCTGGTTCAAATCCGGATTTAGTCTCCCCATGAGAAACCTTCAATAAAGTAAAAGAAAAAATAGGAATTGATCATAGAAAGATGAAGCATAAATCATATGTAGGTTTATTTTTTTTCTCTATTCACAGTACAAACTCTGTAGCAGAAATTTGATGGCTCTGCTAACAAAGTAGAATGTTGATGCAATAATCATAACAAAATGAAATCACACAAACCATATTAGAGATGAATAAAGTCAAATGTTTGATTGTTATATAAAAAATGTTCATTTTAATTTACTTAAAAG</gDNA_template>
            <first_frame> E  N  G  *  N  R  V  E  T  D  P  L  Q  R  C  I  Y  F  Q  P  C  Q  *  *  F  P  F  P  F  L  S  K  F  D  F  S  I  F  R  Y  R  I  S  T  D  G  Y  G  K  F  D  F  C  F  E   : G  N  L  Q  G  R  R  E  K  V  C  D  V  *  C  G  S  I  R  M  C  S  F  Y  E  G  S  Q  P  S  K  R  S  Y  E  W  E  L  Y  G  G  S  N  R  Q  S  E  D  V  *  F  S  S  P  K  N  V  *  K  T  R  E  A  I  A  W  I  *  V  Y  N  I  Q  L  L  Q  S  I  C  R  *  H  *  *  S  N  K  I  W  Y  L  L  S  H  *  I  Q  N  Q  V  S  L  C  S  I  I  Y  C  A  V  L  I  Y  V  R  I  A  V  L  P  R  V  Y  *  C  T  I  S  I  N  R  N  W  *  *  V  I  F  Y  L  *  P  N  F  S  A  R  E  M  V  *  N  R  V  C  *  G  A  Y  V  G  L  P  G  S  N  P  D  L  V  S  P  *  E  T  F  N  K  V  K  E  K  I  G  I  D  H  R  K  M  K  H  K  S  Y  V  G  L  F  F  F  S  I  H  S  T  N  S  V  A  E  I  *  W  L  C  *  Q  S  R  M  L  M  Q  *  S  *  Q  N  E  I  T  Q  T  I  L  E  M  N  K  V  K  C  L  I  V  I  *  K  M  F  I  L  I  Y  L  K  </first_frame>
            <second_frame>  K  M  G  E  T  E  S  K  Q  I  L  S  N  A  V  Y  I  F  S  P  A  N  N  D  F  L  F  P  F  L  A  N  L  T  S  P  Y  S  D  T  E  Y  Q  Q  M  V  M  G  N  L  T  S  V  L  K  :  G  I  Y  K  E  G  G  R  K  F  V  M  F  N  V  A  P  L  G  C  V  P  S  M  R  A  L  N  L  Q  K  G  V  T  N  G  S  C  M  E  E  A  T  D  K  A  K  T  F  N  S  A  L  P  R  M  F  K  K  L  E  K  Q  L  P  G  F  K  Y  T  I  F  N  F  F  K  V  F  A  D  S  I  N  N  P  T  K  Y  G  I  F  Y  L  I  E  F  K  I  K  Y  L  Y  V  R  L  Y  I  V  Q  C  *  F  M  *  E  *  L  F  Y  Q  E  F  T  N  V  Q  *  V  S  T  G  I  G  S  K  *  S  F  I  F  N  Q  I  S  R  L  E  K  W  Y  E  I  A  F  V  K  E  R  M  *  D  F  L  V  Q  I  R  I  *  S  P  H  E  K  P  S  I  K  *  K  K  K  *  E  L  I  I  E  R  *  S  I  N  H  M  *  V  Y  F  F  S  L  F  T  V  Q  T  L  *  Q  K  F  D  G  S  A  N  K  V  E  C  *  C  N  N  H  N  K  M  K  S  H  K  P  Y  *  R  *  I  K  S  N  V  *  L  L  Y  K  K  C  S  F  *  F  T  *  K </second_frame>
            <third_frame>   K  W  V  K  Q  S  R  N  R  S  S  P  T  L  Y  I  F  S  A  L  P  I  M  I  S  F  S  L  S  *  Q  I  *  L  L  H  I  P  I  Q  N  I  N  R  W  L  W  E  I  *  L  L  F  *  R :   E  F  T  R  K  E  G  E  S  L  *  C  L  M  W  L  H  *  D  V  F  L  L  *  G  L  S  T  F  K  K  E  L  R  M  G  V  V  W  R  K  Q  Q  T  K  R  R  R  L  I  Q  L  S  Q  E  C  L  K  N  *  R  S  N  C  L  D  L  S  I  Q  Y  S  T  S  S  K  Y  L  Q  I  A  L  I  I  Q  Q  N  M  V  S  S  I  S  L  N  S  K  S  S  I  F  M  F  D  Y  I  L  C  S  V  D  L  C  K  N  S  C  F  T  K  S  L  L  M  Y  N  K  Y  Q  Q  E  L  V  V  S  N  L  L  S  L  T  K  F  L  G  S  R  N  G  M  K  S  R  L  L  R  S  V  C  R  T  S  W  F  K  S  G  F  S  L  P  M  R  N  L  Q  *  S  K  R  K  N  R  N  *  S  *  K  D  E  A  *  I  I  C  R  F  I  F  F  L  Y  S  Q  Y  K  L  C  S  R  N  L  M  A  L  L  T  K  *  N  V  D  A  I  I  I  T  K  *  N  H  T  N  H  I  R  D  E  *  S  Q  M  F  D  C  Y  I  K  N  V  H  F  N  L  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14542" stop="14378"/>
                    <exon start="14233" stop="13901"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGETESKQILSNAVYIFSPANNDFLFPFLANLTSPYSDTEYQQMVMGNLTSVLKGIYKEGGRKFVMFNVAPLGCVPSMRALNLQKGVTNGSCMEEATDKAKTFNSALPRMFKKLEKQLPGFKYTIFNFFKVFADSINNPTKYGIFYLIEFKIKYLYVRLYIVQC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20986" PGL_stop="17329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20986" e_stop="20663"/>
            <exon e_start="17460" e_stop="17329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="20986" e_stop="20663" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20662" i_stop="17461" i_length="3202"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="17460" e_stop="17329" e_length="132"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20986" stop="20663"/>
              <exon start="17460" stop="17329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATAAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTTCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCTATACTGGACTACAGACTCTGCTTGTGTTGATATGGTGAATGCGGTTGAGAGCAATAGCTCTTCAACATTATG : GCTCCTCTTGGCCCGTGATTTTTTCCCTTATTCAGAAGGGTTTTCACGTAAAATTCTTGGCGTCGTTATTTTCCCATTTTATTTCCATTACATTTACCATATATACTTTTGTGCTTGTCCGTATTTTCCCAA</gDNA_template>
            <first_frame> *  F  W  N  L  E  Y  G  *  *  D  C  F  *  G  G  W  Y  W  Y  N  L  F  G  N  *  C  W  N  *  T  S  F  E  Q  C  E  T  C  S  *  C  S  S  A  P  N  F  C  W  C  F  R  *  *  R  I  C  *  Y  Q  R  *  W  K  M  E  A  H  *  G  F  L  G  C  G  S  W  *  Q  T  S  W  S  I  L  D  Y  R  L  C  L  C  *  Y  G  E  C  G  *  E  Q  *  L  F  N  I  M  :  A  P  L  G  P  *  F  F  P  L  F  R  R  V  F  T  *  N  S  W  R  R  Y  F  P  I  L  F  P  L  H  L  P  Y  I  L  L  C  L  S  V  F  S  Q </first_frame>
            <second_frame>  D  F  G  T  L  S  M  G  N  E  T  V  S  R  V  V  G  I  G  T  I  C  L  E  T  S  V  G  T  K  L  V  L  N  N  V  K  H  A  P  D  V  R  L  H  L  I  S  V  G  V  L  D  D  K  G  Y  V  S  T  N  G  D  G  K  W  K  L  I  K  G  F  L  V  V  A  R  G  N  K  R  R  G  L  Y  W  T  T  D  S  A  C  V  D  M  V  N  A  V  E  S  N  S  S  S  T  L  W :   L  L  L  A  R  D  F  F  P  Y  S  E  G  F  S  R  K  I  L  G  V  V  I  F  P  F  Y  F  H  Y  I  Y  H  I  Y  F  C  A  C  P  Y  F  P   </second_frame>
            <third_frame>   I  L  E  P  *  V  W  V  M  R  L  F  L  G  W  L  V  L  V  Q  F  V  W  K  L  V  L  E  L  N  *  F  *  T  M  *  N  M  L  L  M  F  V  C  T  *  F  L  L  V  F  *  M  I  K  D  M  L  V  P  T  V  M  E  N  G  S  S  L  R  V  S  W  L  W  L  V  V  T  N  V  V  V  Y  T  G  L  Q  T  L  L  V  L  I  W  *  M  R  L  R  A  I  A  L  Q  H  Y   : G  S  S  W  P  V  I  F  S  L  I  Q  K  G  F  H  V  K  F  L  A  S  L  F  S  H  F  I  S  I  T  F  T  I  Y  T  F  V  L  V  R  I  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20985" stop="20663"/>
                    <exon start="17460" stop="17331"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFGTLSMGNETVSRVVGIGTICLETSVGTKLVLNNVKHAPDVRLHLISVGVLDDKGYVSTNGDGKWKLIKGFLVVARGNKRRGLYWTTDSACVDMVNAVESNSSSTLWLLLARDFFPYSEGFSRKILGVVIFPFYFHYIYHIYFCACPYFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40742" PGL_stop="44156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40742" e_stop="42174"/>
            <exon e_start="42255" e_stop="42379"/>
            <exon e_start="42459" e_stop="42600"/>
            <exon e_start="42804" e_stop="43309"/>
            <exon e_start="44131" e_stop="44156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.846"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40742" e_stop="42174" e_length="1433"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="42175" i_stop="42254" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42255" e_stop="42379" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42380" i_stop="42458" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42459" e_stop="42600" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42804" e_stop="43309" e_length="506"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43310" i_stop="44130" i_length="821"/>
          </intron>
          <exon e_serial="5" e_score="0.846">
            <gDNA_exon_boundary e_start="44131" e_stop="44156" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40742" stop="42174"/>
              <exon start="42255" stop="42379"/>
              <exon start="42459" stop="42600"/>
              <exon start="42804" stop="43309"/>
              <exon start="44131" stop="44156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACCCCATTCTTTGTGTGTGTGGGTAACGAGCTGTCATCTCCAACTCCTCGGCAGACTGTTCTGTTCACTTCTTCTTATACATATAAACCCTCACTTCTACCACCATTTTCACCATTACCAACCAATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGGAAATCAAGGAAACCATTGTTGAAGTACCGGCTGCGGTTGCTGTGATGGCCTCCACGGAGGAGCCACCGGCTGCAGAGGCAGAGGAACCGAAAACAGAGCAAACCCCACCAGCAGCACCAGAAGAAGTATCCATATGGGGAATACCCCTTTTAGCAGATGAGAGAAGTGATGTAATCCTTCTCAAGTTTCTGCGAGCGAGAGATTTCAAGGTGAAAGAAGCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAAAGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTTTTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGTATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCTATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAG : GTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCATCTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAA : ATACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG : AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTA : AAAAACAAAAAAAAAAAGAAGAGAAA</gDNA_template>
            <first_frame> W  T  P  F  F  V  C  V  G  N  E  L  S  S  P  T  P  R  Q  T  V  L  F  T  S  S  Y  T  Y  K  P  S  L  L  P  P  F  S  P  L  P  T  N  S  S  I  H  *  *  K  S  I  L  *  A  F  F  V  S  G  Y  L  K  S  D  R  E  T  K  K  W  L  R  K  P  R  K  *  L  K  K  P  P  L  K  W  W  C  L  M  L  Q  *  G  R  H  L  N  L  S  R  K  L  C  R  S  H  R  R  K  M  L  L  R  S  L  E  N  R  R  L  R  M  K  R  R  R  N  L  L  V  N  P  I  R  L  R  K  K  V  T  R  L  K  N  F  L  I  L  N  K  K  H  W  L  N  S  N  R  W  F  K  K  L  L  T  S  M  N  S  L  P  L  L  L  R  R  R  Q  R  K  R  M  R  R  K  Q  P  F  P  P  R  H  R  R  Q  S  Q  L  Q  R  P  Q  R  R  R  H  L  I  Q  *  *  R  Q  N  R  N  R  W  P  R  R  K  L  K  Q  R  N  W  R  K  Q  R  R  K  *  L  H  R  K  L  K  Q  L  R  R  R  Q  Q  R  H  H  L  S  H  R  R  Q  R  R  W  R  Q  S  R  K  S  R  K  P  L  L  K  Y  R  L  R  L  L  *  W  P  P  R  R  S  H  R  L  Q  R  Q  R  N  R  K  Q  S  K  P  H  Q  Q  H  Q  K  K  Y  P  Y  G  E  Y  P  F  *  Q  M  R  E  V  M  *  S  F  S  S  F  C  E  R  E  I  S  R  *  K  K  L  S  P  C  *  K  V  L  S  H  G  E  K  N  S  R  L  M  N  S  W  M  R  K  N  *  D  K  D  L  K  K  L  F  T  I  T  E  *  T  K  K  V  T  L  Y  V  T  M  H  L  V  S  S  K  T  K  N  C  T  K  T  L  L  L  M  T  K  R  N  S  P  N  S  S  D  G  E  F  N  S  W  R  N  P  S  G  I  L  I  L  A  L  M  V  S  T  L  L  F  K  F  L  I  *  R  I  H  L  D  S  S  F  T  R  K  N  F  A  K  P  P  I  V  P  F  Y  Y  S  R  I  I  T  L  N  L  L  P  S  R :   C  S  S  M  F  H  G  G  T  Q  L  T  T  G  *  L  M  H  L  S  L  Q  G  P  R  A  S  L  F  L  L  V  L  Q  D  L  L  I  L  Y  S   : N  T  *  H  L  N  K  Y  Q  H  N  M  V  D  L  A  R  R  V  K  R  N  S  P  L  L  N  Q  P  L  R  K  S  L  S  Q  L  L  N  T  P  L  N  S  Q  L  L  R :   K  A  H  W  F  G  K  Q  E  *  Q  G  G  M  Y  H  M  E  L  N  L  C  L  V  L  K  V  A  T  P  F  S  *  R  N  Q  E  K  L  G  Q  M  N  Q  *  S  A  L  A  T  R  Q  V  K  Q  A  K  W  *  S  Q  L  T  T  K  L  L  K  R  R  N  L  F  T  G  P  R  T  R  S  Q  I  A  E  P  P  F  L  V  S  *  I  F  L  L  V  D  I  N  *  Y  Y  Y  F  E  L  F  G  G  I  Y  L  Y  F  I  G  V  I  F  *  A  I  L  L  L  D  C  F  F  Y  Y  M  G  N  I  Y  Y  I  T  K  G  L  R  C  G  V  Q  V  I  D  T  F  S  S  E  I  F  C  V  N  L  M  L  P  L  I  F  L   : K  K  Q  K  K  K  E  E  K </first_frame>
            <second_frame>  G  P  H  S  L  C  V  W  V  T  S  C  H  L  Q  L  L  G  R  L  F  C  S  L  L  L  I  H  I  N  P  H  F  Y  H  H  F  H  H  Y  Q  P  I  L  L  Y  I  N  K  N  P  F  F  K  P  F  S  F  L  G  I  *  N  L  I  G  K  P  R  N  G  *  G  N  Q  E  N  S  *  R  N  H  P  *  S  G  G  V  *  C  Y  S  E  G  D  T  S  T  *  A  G  N  F  A  G  V  T  G  E  R  C  C  S  G  H  W  R  I  E  G  *  G  *  K  G  E  G  T  C  W  *  I  Q  F  V  *  G  R  K  *  Q  G  *  R  T  S  *  S  *  T  K  S  I  G  *  I  Q  T  D  G  S  R  S  S  *  Q  A  *  I  H  C  P  S  S  S  A  A  G  K  G  R  G  *  E  E  S  S  R  S  R  R  G  T  G  G  R  A  S  Y  R  G  R  S  A  G  D  T  *  S  S  D  R  D  R  I  G  T  G  G  R  E  E  S  *  N  R  E  I  G  E  N  R  G  E  S  N  S  T  G  N  *  S  N  S  G  A  G  S  R  D  T  I  *  A  I  G  D  R  E  G  G  G  S  R  G  N  Q  G  N  H  C  *  S  T  G  C  G  C  C  D  G  L  H  G  G  A  T  G  C  R  G  R  G  T  E  N  R  A  N  P  T  S  S  T  R  R  S  I  H  M  G  N  T  P  F  S  R  *  E  K  *  C  N  P  S  Q  V  S  A  S  E  R  F  Q  G  E  R  S  F  H  H  V  E  K  C  C  R  M  E  K  R  I  Q  D  *  *  T  L  G  *  E  R  I  R  T  R  T  *  K  S  C  L  Q  S  R  S  R  Q  R  R  S  P  C  M  L  Q  C  I  W  *  V  P  R  Q  R  I  V  P  K  H  F  C  *  *  Q  R  E  T  H  Q  I  P  Q  M  E  N  S  I  H  G  E  I  H  Q  E  S  *  F  *  P  *  W  Y  Q  H  F  C  S  S  S  *  S  E  E  F  T  W  T  L  L  L  Q  E  R  T  S  P  S  H  Q  S  C  P  S  I  T  P  G  *  L  P  *  I  C  C  Q  A   : G  V  H  Q  C  S  M  V  V  P  S  L  L  Q  D  D  *  C  I  F  H  Y  K  D  Q  E  Q  V  C  F  C  W  S  F  K  I  C  *  Y  S  I  Q  :  I  H  S  T  *  T  S  T  S  T  I  W  W  T  *  Q  G  G  *  R  G  I  H  H  C  *  T  S  H  *  G  N  H  *  A  S  F  *  T  H  H  *  I  P  S  Y  *   : E  K  H  I  G  L  G  S  K  S  D  R  V  G  C  I  I  W  S  *  I  C  A  *  C  *  R  W  L  H  H  S  H  R  E  I  K  K  S  W  G  K  *  I  S  D  Q  H  *  L  Q  G  K  *  S  R  Q  S  G  N  H  N  *  Q  P  N  F  *  K  E  E  T  C  L  Q  V  Q  E  Q  D  L  R  L  L  S  R  L  F  L  F  H  R  F  F  F  W  L  I  S  T  S  T  I  I  L  S  F  L  G  V  F  I  Y  I  L  L  G  L  F  F  E  L  F  C  C  W  I  V  F  F  I  I  W  G  I  F  I  I  L  Q  R  G  *  D  V  E  Y  K  L  L  I  H  F  L  L  K  Y  F  V  *  I  *  C  C  L  S  F  S  L  :  K  N  K  K  K  K  K  R   </second_frame>
            <third_frame>   D  P  I  L  C  V  C  G  *  R  A  V  I  S  N  S  S  A  D  C  S  V  H  F  F  L  Y  I  *  T  L  T  S  T  T  I  F  T  I  T  N  Q  F  F  Y  T  L  I  K  I  H  S  L  S  L  F  R  F  W  V  S  E  I  *  S  G  N  Q  E  M  A  E  E  T  K  K  I  A  E  E  T  T  P  E  V  V  V  S  D  V  T  V  R  E  T  P  Q  P  E  P  E  T  L  P  E  S  P  E  K  D  A  A  P  V  T  G  E  S  K  V  E  D  E  K  E  K  E  L  V  G  E  S  N  S  F  K  E  E  S  N  K  V  E  E  L  P  N  P  E  Q  K  A  L  A  E  F  K  Q  M  V  Q  E  A  L  N  K  H  E  F  T  A  P  P  P  P  P  P  A  K  E  E  D  E  K  K  A  A  V  P  A  E  A  P  E  A  E  P  V  T  E  A  A  A  P  A  T  P  D  P  V  I  E  T  E  S  E  P  V  A  E  K  K  V  E  T  E  K  L  E  K  T  E  E  K  V  T  P  P  E  T  E  A  T  P  A  P  A  A  E  T  P  S  E  P  S  E  T  E  K  V  E  A  V  E  E  I  K  E  T  I  V  E  V  P  A  A  V  A  V  M  A  S  T  E  E  P  P  A  A  E  A  E  E  P  K  T  E  Q  T  P  P  A  A  P  E  E  V  S  I  W  G  I  P  L  L  A  D  E  R  S  D  V  I  L  L  K  F  L  R  A  R  D  F  K  V  K  E  A  F  T  M  L  K  S  V  V  A  W  R  K  E  F  K  I  D  E  L  L  D  E  K  E  L  G  Q  G  L  E  K  V  V  Y  N  H  G  V  D  K  E  G  H  P  V  C  Y  N  A  F  G  E  F  Q  D  K  E  L  Y  Q  N  T  F  A  D  D  K  E  K  L  T  K  F  L  R  W  R  I  Q  F  M  E  K  S  I  R  N  L  D  F  S  P  D  G  I  N  T  F  V  Q  V  L  D  L  K  N  S  P  G  L  F  F  Y  K  K  E  L  R  Q  A  T  N  R  A  L  L  L  L  Q  D  N  Y  P  E  F  V  A  K  Q  :  V  F  I  N  V  P  W  W  Y  P  A  Y  Y  R  M  I  N  A  S  F  T  T  R  T  K  S  K  F  V  F  A  G  P  S  R  S  A  D  T  L  F  K :   Y  I  A  P  E  Q  V  P  A  Q  Y  G  G  L  S  K  E  G  E  E  E  F  T  T  A  E  P  A  T  E  E  I  I  K  P  A  S  K  H  T  I  E  F  P  V  T  E  :  K  S  T  L  V  W  E  A  R  V  T  G  W  D  V  S  Y  G  A  E  F  V  P  S  A  E  G  G  Y  T  I  L  I  E  K  S  R  K  V  G  A  N  E  S  V  I  S  T  S  Y  K  A  S  E  A  G  K  V  V  I  T  I  D  N  Q  T  S  K  K  K  K  L  V  Y  R  S  K  N  K  I  S  D  C  *  A  A  F  S  C  F  I  D  F  S  F  G  *  Y  Q  L  V  L  L  F  *  A  F  W  G  Y  L  F  I  F  Y  W  G  Y  F  L  S  Y  F  A  V  G  L  F  F  L  L  Y  G  E  Y  L  L  Y  Y  K  G  V  E  M  W  S  T  S  Y  *  Y  I  F  F  *  N  I  L  C  K  S  N  A  A  S  H  F  P  * :   K  T  K  K  K  R  R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40936" stop="42174"/>
                    <exon start="42255" stop="42379"/>
                    <exon start="42459" stop="42600"/>
                    <exon start="42804" stop="43055"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1755</number_coding_nucleotides>
                  <number_encoded_amino_acids>585</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGNQEMAEETKKIAEETTPEVVVSDVTVRETPQPEPETLPESPEKDAAPVTGESKVEDEKEKELVGESNSFKEESNKVEELPNPEQKALAEFKQMVQEALNKHEFTAPPPPPPAKEEDEKKAAVPAEAPEAEPVTEAAAPATPDPVIETESEPVAEKKVETEKLEKTEEKVTPPETEATPAPAAETPSEPSETEKVEAVEEIKETIVEVPAAVAVMASTEEPPAAEAEEPKTEQTPPAAPEEVSIWGIPLLADERSDVILLKFLRARDFKVKEAFTMLKSVVAWRKEFKIDELLDEKELGQGLEKVVYNHGVDKEGHPVCYNAFGEFQDKELYQNTFADDKEKLTKFLRWRIQFMEKSIRNLDFSPDGINTFVQVLDLKNSPGLFFYKKELRQATNRALLLLQDNYPEFVAKQVFINVPWWYPAYYRMINASFTTRTKSKFVFAGPSRSADTLFKYIAPEQVPAQYGGLSKEGEEEFTTAEPATEEIIKPASKHTIEFPVTEKSTLVWEARVTGWDVSYGAEFVPSAEGGYTILIEKSRKVGANESVISTSYKASEAGKVVITIDNQTSKKKKLVYRSKNKISDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42460" e_stop="42600"/>
            <exon e_start="42804" e_stop="43364"/>
            <exon e_start="44131" e_stop="44152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42460" e_stop="42600" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42601" i_stop="42803" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="42804" e_stop="43364" e_length="561"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43365" i_stop="44130" i_length="766"/>
          </intron>
          <exon e_serial="3" e_score="0.864">
            <gDNA_exon_boundary e_start="44131" e_stop="44152" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42460" stop="42600"/>
              <exon start="42804" stop="43364"/>
              <exon start="44131" stop="44152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATAGCACCTGAACAAGTACCAGCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCAGCCACTGAGGAAATCATTAAGCCAGCTTCTAAACACACCATTGAATTCCCAGTTACTGAG : AAAAGCACATTGGTTTGGGAAGCAAGAGTGACAGGGTGGGATGTATCATATGGAGCTGAATTTGTGCCTAGTGCTGAAGGTGGCTACACCATTCTCATAGAGAAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGGGAATATTTATTATATTACAAAGGGGTTGAGATGTGGAGTACAAGTTATTGATACATTTTCTTCTGAAATATTTTGTGTAAATCTAATGCTGCCTCTCATTTTCCTTACATTTTTTTGGTGATGTGAAGCTTAACGTTAGTTAATCCTATACTTATGTTTCCT : AAAAACAAAAAAAAAAAGAAGA</gDNA_template>
            <first_frame> Y  I  A  P  E  Q  V  P  A  Q  Y  G  G  L  S  K  E  G  E  E  E  F  T  T  A  E  P  A  T  E  E  I  I  K  P  A  S  K  H  T  I  E  F  P  V  T  E  :  K  S  T  L  V  W  E  A  R  V  T  G  W  D  V  S  Y  G  A  E  F  V  P  S  A  E  G  G  Y  T  I  L  I  E  K  S  R  K  V  G  A  N  E  S  V  I  S  T  S  Y  K  A  S  E  A  G  K  V  V  I  T  I  D  N  Q  T  S  K  K  K  K  L  V  Y  R  S  K  N  K  I  S  D  C  *  A  A  F  S  C  F  I  D  F  S  F  G  *  Y  Q  L  V  L  L  F  *  A  F  W  G  Y  L  F  I  F  Y  W  G  Y  F  L  S  Y  F  A  V  G  L  F  F  L  L  Y  G  E  Y  L  L  Y  Y  K  G  V  E  M  W  S  T  S  Y  *  Y  I  F  F  *  N  I  L  C  K  S  N  A  A  S  H  F  P  Y  I  F  L  V  M  *  S  L  T  L  V  N  P  I  L  M  F  P  :  K  N  K  K  K  K  K  </first_frame>
            <second_frame>  T  *  H  L  N  K  Y  Q  H  N  M  V  D  L  A  R  R  V  K  R  N  S  P  L  L  N  Q  P  L  R  K  S  L  S  Q  L  L  N  T  P  L  N  S  Q  L  L  R :   K  A  H  W  F  G  K  Q  E  *  Q  G  G  M  Y  H  M  E  L  N  L  C  L  V  L  K  V  A  T  P  F  S  *  R  N  Q  E  K  L  G  Q  M  N  Q  *  S  A  L  A  T  R  Q  V  K  Q  A  K  W  *  S  Q  L  T  T  K  L  L  K  R  R  N  L  F  T  G  P  R  T  R  S  Q  I  A  E  P  P  F  L  V  S  *  I  F  L  L  V  D  I  N  *  Y  Y  Y  F  E  L  F  G  G  I  Y  L  Y  F  I  G  V  I  F  *  A  I  L  L  L  D  C  F  F  Y  Y  M  G  N  I  Y  Y  I  T  K  G  L  R  C  G  V  Q  V  I  D  T  F  S  S  E  I  F  C  V  N  L  M  L  P  L  I  F  L  T  F  F  W  *  C  E  A  *  R  *  L  I  L  Y  L  C  F  L :   K  T  K  K  K  R  R </second_frame>
            <third_frame>   H  S  T  *  T  S  T  S  T  I  W  W  T  *  Q  G  G  *  R  G  I  H  H  C  *  T  S  H  *  G  N  H  *  A  S  F  *  T  H  H  *  I  P  S  Y  *   : E  K  H  I  G  L  G  S  K  S  D  R  V  G  C  I  I  W  S  *  I  C  A  *  C  *  R  W  L  H  H  S  H  R  E  I  K  K  S  W  G  K  *  I  S  D  Q  H  *  L  Q  G  K  *  S  R  Q  S  G  N  H  N  *  Q  P  N  F  *  K  E  E  T  C  L  Q  V  Q  E  Q  D  L  R  L  L  S  R  L  F  L  F  H  R  F  F  F  W  L  I  S  T  S  T  I  I  L  S  F  L  G  V  F  I  Y  I  L  L  G  L  F  F  E  L  F  C  C  W  I  V  F  F  I  I  W  G  I  F  I  I  L  Q  R  G  *  D  V  E  Y  K  L  L  I  H  F  L  L  K  Y  F  V  *  I  *  C  C  L  S  F  S  L  H  F  F  G  D  V  K  L  N  V  S  *  S  Y  T  Y  V  S   : *  K  Q  K  K  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42460" stop="42600"/>
                    <exon start="42804" stop="43055"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIAPEQVPAQYGGLSKEGEEEFTTAEPATEEIIKPASKHTIEFPVTEKSTLVWEARVTGWDVSYGAEFVPSAEGGYTILIEKSRKVGANESVISTSYKASEAGKVVITIDNQTSKKKKLVYRSKNKISDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40868" e_stop="41536"/>
            <exon e_start="42906" e_stop="43202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40868" e_stop="41536" e_length="669"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41537" i_stop="42905" i_length="1369"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="42906" e_stop="43202" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40868" stop="41536"/>
              <exon start="42906" stop="43202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCTTCTATACATTAATAAAAATCCATTCTTTAAGCCTTTTTCGTTTCTGGGTATCTGAAATCTGATCGGGAAACCAAGAAATGGCTGAGGAAACCAAGAAAATAGCTGAAGAAACCACCCCTGAAGTGGTGGTGTCTGATGTTACAGTGAGGGAGACACCTCAACCTGAGCCGGAAACTTTGCCGGAGTCACCGGAGAAAGATGCTGCTCCGGTCACTGGAGAATCGAAGGTTGAGGATGAAAAGGAGAAGGAACTTGTTGGTGAATCCAATTCGTTTAAGGAAGAAAGTAACAAGGTTGAAGAACTTCCTAATCCTGAACAAAAAGCATTGGCTGAATTCAAACAGATGGTTCAAGAAGCTCTTAACAAGCATGAATTCACTGCCCCTCCTCCTCCGCCGCCGGCAAAGGAAGAGGATGAGAAGAAAGCAGCCGTTCCCGCCGAGGCACCGGAGGCAGAGCCAGTTACAGAGGCCGCAGCGCCGGCGACACCTGATCCAGTGATAGAGACAGAATCGGAACCGGTGGCCGAGAAGAAAGTTGAAACAGAGAAATTGGAGAAAACAGAGGAGAAAGTAACTCCACCGGAAACTGAAGCAACTCCGGCGCCGGCAGCAGAGACACCATCTGAGCCATCGGAGACAGAGAAGGTGGAGGCAGTCGAGG : AAATCAAGAAAAGTTGGGGCAAATGAATCAGTGATCAGCACTAGCTACAAGGCAAGTGAAGCAGGCAAAGTGGTAATCACAATTGACAACCAAACTTCTAAAAAGAAGAAACTTGTTTACAGGTCCAAGAACAAGATCTCAGATTGCTGAGCCGCCTTTTCTTGTTTCATAGATTTTTCTTTTGGTTGATATCAACTAGTACTATTATTTTGAGCTTTTTGGGGGTATTTATTTATATTTTATTGGGGTTATTTTTTGAGCTATTTTGCTGTTGGATTGTTTTTTTTATTATATGGG</gDNA_template>
            <first_frame> N  S  S  I  H  *  *  K  S  I  L  *  A  F  F  V  S  G  Y  L  K  S  D  R  E  T  K  K  W  L  R  K  P  R  K  *  L  K  K  P  P  L  K  W  W  C  L  M  L  Q  *  G  R  H  L  N  L  S  R  K  L  C  R  S  H  R  R  K  M  L  L  R  S  L  E  N  R  R  L  R  M  K  R  R  R  N  L  L  V  N  P  I  R  L  R  K  K  V  T  R  L  K  N  F  L  I  L  N  K  K  H  W  L  N  S  N  R  W  F  K  K  L  L  T  S  M  N  S  L  P  L  L  L  R  R  R  Q  R  K  R  M  R  R  K  Q  P  F  P  P  R  H  R  R  Q  S  Q  L  Q  R  P  Q  R  R  R  H  L  I  Q  *  *  R  Q  N  R  N  R  W  P  R  R  K  L  K  Q  R  N  W  R  K  Q  R  R  K  *  L  H  R  K  L  K  Q  L  R  R  R  Q  Q  R  H  H  L  S  H  R  R  Q  R  R  W  R  Q  S  R  :  K  S  R  K  V  G  A  N  E  S  V  I  S  T  S  Y  K  A  S  E  A  G  K  V  V  I  T  I  D  N  Q  T  S  K  K  K  K  L  V  Y  R  S  K  N  K  I  S  D  C  *  A  A  F  S  C  F  I  D  F  S  F  G  *  Y  Q  L  V  L  L  F  *  A  F  W  G  Y  L  F  I  F  Y  W  G  Y  F  L  S  Y  F  A  V  G  L  F  F  L  L  Y  G </first_frame>
            <second_frame>  I  L  L  Y  I  N  K  N  P  F  F  K  P  F  S  F  L  G  I  *  N  L  I  G  K  P  R  N  G  *  G  N  Q  E  N  S  *  R  N  H  P  *  S  G  G  V  *  C  Y  S  E  G  D  T  S  T  *  A  G  N  F  A  G  V  T  G  E  R  C  C  S  G  H  W  R  I  E  G  *  G  *  K  G  E  G  T  C  W  *  I  Q  F  V  *  G  R  K  *  Q  G  *  R  T  S  *  S  *  T  K  S  I  G  *  I  Q  T  D  G  S  R  S  S  *  Q  A  *  I  H  C  P  S  S  S  A  A  G  K  G  R  G  *  E  E  S  S  R  S  R  R  G  T  G  G  R  A  S  Y  R  G  R  S  A  G  D  T  *  S  S  D  R  D  R  I  G  T  G  G  R  E  E  S  *  N  R  E  I  G  E  N  R  G  E  S  N  S  T  G  N  *  S  N  S  G  A  G  S  R  D  T  I  *  A  I  G  D  R  E  G  G  G  S  R  G :   N  Q  E  K  L  G  Q  M  N  Q  *  S  A  L  A  T  R  Q  V  K  Q  A  K  W  *  S  Q  L  T  T  K  L  L  K  R  R  N  L  F  T  G  P  R  T  R  S  Q  I  A  E  P  P  F  L  V  S  *  I  F  L  L  V  D  I  N  *  Y  Y  Y  F  E  L  F  G  G  I  Y  L  Y  F  I  G  V  I  F  *  A  I  L  L  L  D  C  F  F  Y  Y  M   </second_frame>
            <third_frame>   F  F  Y  T  L  I  K  I  H  S  L  S  L  F  R  F  W  V  S  E  I  *  S  G  N  Q  E  M  A  E  E  T  K  K  I  A  E  E  T  T  P  E  V  V  V  S  D  V  T  V  R  E  T  P  Q  P  E  P  E  T  L  P  E  S  P  E  K  D  A  A  P  V  T  G  E  S  K  V  E  D  E  K  E  K  E  L  V  G  E  S  N  S  F  K  E  E  S  N  K  V  E  E  L  P  N  P  E  Q  K  A  L  A  E  F  K  Q  M  V  Q  E  A  L  N  K  H  E  F  T  A  P  P  P  P  P  P  A  K  E  E  D  E  K  K  A  A  V  P  A  E  A  P  E  A  E  P  V  T  E  A  A  A  P  A  T  P  D  P  V  I  E  T  E  S  E  P  V  A  E  K  K  V  E  T  E  K  L  E  K  T  E  E  K  V  T  P  P  E  T  E  A  T  P  A  P  A  A  E  T  P  S  E  P  S  E  T  E  K  V  E  A  V  E   : E  I  K  K  S  W  G  K  *  I  S  D  Q  H  *  L  Q  G  K  *  S  R  Q  S  G  N  H  N  *  Q  P  N  F  *  K  E  E  T  C  L  Q  V  Q  E  Q  D  L  R  L  L  S  R  L  F  L  F  H  R  F  F  F  W  L  I  S  T  S  T  I  I  L  S  F  L  G  V  F  I  Y  I  L  L  G  L  F  F  E  L  F  C  C  W  I  V  F  F  I  I  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40936" stop="41536"/>
                    <exon start="42906" stop="42931"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGNQEMAEETKKIAEETTPEVVVSDVTVRETPQPEPETLPESPEKDAAPVTGESKVEDEKEKELVGESNSFKEESNKVEELPNPEQKALAEFKQMVQEALNKHEFTAPPPPPPAKEEDEKKAAVPAEAPEAEPVTEAAAPATPDPVIETESEPVAEKKVETEKLEKTEEKVTPPETEATPAPAAETPSEPSETEKVEAVEEIKKSWGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43007" stop="43201"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEETCLQVQEQDLRLLSRLFLFHRFFFWLISTSTIILSFLGVFIYILLGLFFELFCCWIVFFIIW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="63388" PGL_stop="64154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63388" e_stop="63536"/>
            <exon e_start="63813" e_stop="64154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.993"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="63388" e_stop="63536" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="63537" i_stop="63812" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="63813" e_stop="64154" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63388" stop="63536"/>
              <exon start="63813" stop="64154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGTGGAAAGTTAAGGATGTGAAGTTGTTAGAAGAGGATTTAATAAATACTGCTTGTCAACTGGAGCTCTCTCTGATGCAGACTTGCAAGCAGGTTATGGGAGATTACGATGATCTGACAGCCGAATTCAGTTCTTTCCAGAGGCAG : GTGATTGAAAATCAGAAACTTATTTGGGCAAAGGTCAAGCAGCTGAGTGGTAATGCTGGACTTGAACGTCTGGAGCATGCTCTTTCTGAGCTGCGGTCTAGGTTTATTGACTCCATGGAGACTGATTCTCCGAGTTCAGTTGGTTCATCTGATAACTCTGAAATCAAGAATTCAGATGAGTTCAATGAAAATGCCAGGTGTTATGGTACACAGGGCATTGCTTGGCCCGTATCTGTGGAAGATGATTCATACTTGTGCGATAAATGTGGCTCTGGAACTCCTCAAAAAAGCATATCTACTGGTTTATTACGTGCGACTGAGAATGAAGTGCTTTTGAATGAA</gDNA_template>
            <first_frame> *  C  G  K  L  R  M  *  S  C  *  K  R  I  *  *  I  L  L  V  N  W  S  S  L  *  C  R  L  A  S  R  L  W  E  I  T  M  I  *  Q  P  N  S  V  L  S  R  G  R :   *  L  K  I  R  N  L  F  G  Q  R  S  S  S  *  V  V  M  L  D  L  N  V  W  S  M  L  F  L  S  C  G  L  G  L  L  T  P  W  R  L  I  L  R  V  Q  L  V  H  L  I  T  L  K  S  R  I  Q  M  S  S  M  K  M  P  G  V  M  V  H  R  A  L  L  G  P  Y  L  W  K  M  I  H  T  C  A  I  N  V  A  L  E  L  L  K  K  A  Y  L  L  V  Y  Y  V  R  L  R  M  K  C  F  *  M   </first_frame>
            <second_frame>  D  V  E  S  *  G  C  E  V  V  R  R  G  F  N  K  Y  C  L  S  T  G  A  L  S  D  A  D  L  Q  A  G  Y  G  R  L  R  *  S  D  S  R  I  Q  F  F  P  E  A   : G  D  *  K  S  E  T  Y  L  G  K  G  Q  A  A  E  W  *  C  W  T  *  T  S  G  A  C  S  F  *  A  A  V  *  V  Y  *  L  H  G  D  *  F  S  E  F  S  W  F  I  *  *  L  *  N  Q  E  F  R  *  V  Q  *  K  C  Q  V  L  W  Y  T  G  H  C  L  A  R  I  C  G  R  *  F  I  L  V  R  *  M  W  L  W  N  S  S  K  K  H  I  Y  W  F  I  T  C  D  *  E  *  S  A  F  E  *  </second_frame>
            <third_frame>   M  W  K  V  K  D  V  K  L  L  E  E  D  L  I  N  T  A  C  Q  L  E  L  S  L  M  Q  T  C  K  Q  V  M  G  D  Y  D  D  L  T  A  E  F  S  S  F  Q  R  Q  :  V  I  E  N  Q  K  L  I  W  A  K  V  K  Q  L  S  G  N  A  G  L  E  R  L  E  H  A  L  S  E  L  R  S  R  F  I  D  S  M  E  T  D  S  P  S  S  V  G  S  S  D  N  S  E  I  K  N  S  D  E  F  N  E  N  A  R  C  Y  G  T  Q  G  I  A  W  P  V  S  V  E  D  D  S  Y  L  C  D  K  C  G  S  G  T  P  Q  K  S  I  S  T  G  L  L  R  A  T  E  N  E  V  L  L  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63390" stop="63536"/>
                    <exon start="63813" stop="64154"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MWKVKDVKLLEEDLINTACQLELSLMQTCKQVMGDYDDLTAEFSSFQRQVIENQKLIWAKVKQLSGNAGLERLEHALSELRSRFIDSMETDSPSSVGSSDNSEIKNSDEFNENARCYGTQGIAWPVSVEDDSYLCDKCGSGTPQKSISTGLLRATENEVLLNE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="64751" PGL_stop="67262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64751" e_stop="64820"/>
            <exon e_start="65182" e_stop="65503"/>
            <exon e_start="65597" e_stop="65777"/>
            <exon e_start="66608" e_stop="67262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64751" e_stop="64820" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.851">
            <gDNA_intron_boundary i_start="64821" i_stop="65181" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65182" e_stop="65503" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.850">
            <gDNA_intron_boundary i_start="65504" i_stop="65596" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65597" e_stop="65777" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65778" i_stop="66607" i_length="830"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="66608" e_stop="67262" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64751" stop="64820"/>
              <exon start="65182" stop="65503"/>
              <exon start="65597" stop="65777"/>
              <exon start="66608" stop="67262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAATAGCACTGCATTGTTTGCTTCTTTGGTTATCAAGGGTTTGCAATTTGTTCTAAGGCAGATTAAG : AAACTCAAAGGTGAAATAAGCAAAGCACGCATCAAATTGTTGGAACCATTAATCAAGGGACCTGCTGGTTTTGAATACCTTAGAAGTTCTTTTTCCAACCGCTATGGTCCTCCTACTGAGGCTCTAATCTCTCTACCATTAGTGAAGCAATGGCTATCTTCTGTCATGTTAGTGGCTGTGCAAGAGTGGGATGACCACCTGAGTTCATTATCATCTCTGAGGTTGAGCAGTGGGGCACATTCTTCGGAGAAAGCTCCAATCACACTTAGAGCTGGAGGTAGCTCTCTAAGGATATCAGATCCTCCAACCCTGAAGACTAATG : CCGAACAACCAGAATGCAAGGGAGATAAGGTTGATCTATTTTTAAGGCTTGGTTTGTTGCAACTTGTCTGTGAAATTGAGGGGTTGACCGTGGAAACACTACCCGAGACTTTGAAATTGAATTTCTCCAGATTGAGAGCTGTCCAGGCTATCCTCCAGAAAATCATTGTTGTCTGTACTAG : CATATTGGTTTTGCGGCAGACTCTTCTTGCCGAATGCCTGGTTAGCAGCCCCTCAGAGATGGAAGATATATCATCAAAATCTATTACAAAGCTGTTTAAGCTTCTGGATAACATGGAGGATGCTGGTATTACTGAAGTTGTTGATACACTGAGCCTTTGCTTAGAAGGTGATGAGCCAAAGAAGCTTCAAGCGAGGAAGGAGATCATGGCGAACGTGTTGGCAAAGAGCTTGCGAGCAGGGGATGCCATTTTCACTCGAGTTTCGCGCACTGTTTTTTTGGCAGCAAAAGCAATTTTACTTTGCGGAAGTGTAGCTGAGGGTGGGCAATTGGCGGAGAACACCCTGAAACGTGTTGGTGCCAATCTACTCACTGGAAAGCTGGTTGAGGCTATGAAAGATCTGTTGGTTGTGGCAACTGTGTCAGCCAGAGTTCATGGTTCATGGTATGTAGAGGTGCTTAAAAATATGAGAGCTTTATAGCACACACACTTGTTCAAGAAATTGTCAGCTTGCATTCTTACATGAATGTATAGGACGGGAAAGTTGATCTTACTATATGCAATATAATGTATTATGAAAGAAGTATTGTTTCTAAATATAATAATAAAAATCGTAGCCAAGAACACGCCAATTATATGAGCCTATATTTCAAAT</gDNA_template>
            <first_frame> R  K  *  H  C  I  V  C  F  F  G  Y  Q  G  F  A  I  C  S  K  A  D  *   : E  T  Q  R  *  N  K  Q  S  T  H  Q  I  V  G  T  I  N  Q  G  T  C  W  F  *  I  P  *  K  F  F  F  Q  P  L  W  S  S  Y  *  G  S  N  L  S  T  I  S  E  A  M  A  I  F  C  H  V  S  G  C  A  R  V  G  *  P  P  E  F  I  I  I  S  E  V  E  Q  W  G  T  F  F  G  E  S  S  N  H  T  *  S  W  R  *  L  S  K  D  I  R  S  S  N  P  E  D  *  C :   R  T  T  R  M  Q  G  R  *  G  *  S  I  F  K  A  W  F  V  A  T  C  L  *  N  *  G  V  D  R  G  N  T  T  R  D  F  E  I  E  F  L  Q  I  E  S  C  P  G  Y  P  P  E  N  H  C  C  L  Y  *  :  H  I  G  F  A  A  D  S  S  C  R  M  P  G  *  Q  P  L  R  D  G  R  Y  I  I  K  I  Y  Y  K  A  V  *  A  S  G  *  H  G  G  C  W  Y  Y  *  S  C  *  Y  T  E  P  L  L  R  R  *  *  A  K  E  A  S  S  E  E  G  D  H  G  E  R  V  G  K  E  L  A  S  R  G  C  H  F  H  S  S  F  A  H  C  F  F  G  S  K  S  N  F  T  L  R  K  C  S  *  G  W  A  I  G  G  E  H  P  E  T  C  W  C  Q  S  T  H  W  K  A  G  *  G  Y  E  R  S  V  G  C  G  N  C  V  S  Q  S  S  W  F  M  V  C  R  G  A  *  K  Y  E  S  F  I  A  H  T  L  V  Q  E  I  V  S  L  H  S  Y  M  N  V  *  D  G  K  V  D  L  T  I  C  N  I  M  Y  Y  E  R  S  I  V  S  K  Y  N  N  K  N  R  S  Q  E  H  A  N  Y  M  S  L  Y  F  K  </first_frame>
            <second_frame>  E  N  S  T  A  L  F  A  S  L  V  I  K  G  L  Q  F  V  L  R  Q  I  K  :  K  L  K  G  E  I  S  K  A  R  I  K  L  L  E  P  L  I  K  G  P  A  G  F  E  Y  L  R  S  S  F  S  N  R  Y  G  P  P  T  E  A  L  I  S  L  P  L  V  K  Q  W  L  S  S  V  M  L  V  A  V  Q  E  W  D  D  H  L  S  S  L  S  S  L  R  L  S  S  G  A  H  S  S  E  K  A  P  I  T  L  R  A  G  G  S  S  L  R  I  S  D  P  P  T  L  K  T  N   : A  E  Q  P  E  C  K  G  D  K  V  D  L  F  L  R  L  G  L  L  Q  L  V  C  E  I  E  G  L  T  V  E  T  L  P  E  T  L  K  L  N  F  S  R  L  R  A  V  Q  A  I  L  Q  K  I  I  V  V  C  T  S :   I  L  V  L  R  Q  T  L  L  A  E  C  L  V  S  S  P  S  E  M  E  D  I  S  S  K  S  I  T  K  L  F  K  L  L  D  N  M  E  D  A  G  I  T  E  V  V  D  T  L  S  L  C  L  E  G  D  E  P  K  K  L  Q  A  R  K  E  I  M  A  N  V  L  A  K  S  L  R  A  G  D  A  I  F  T  R  V  S  R  T  V  F  L  A  A  K  A  I  L  L  C  G  S  V  A  E  G  G  Q  L  A  E  N  T  L  K  R  V  G  A  N  L  L  T  G  K  L  V  E  A  M  K  D  L  L  V  V  A  T  V  S  A  R  V  H  G  S  W  Y  V  E  V  L  K  N  M  R  A  L  *  H  T  H  L  F  K  K  L  S  A  C  I  L  T  *  M  Y  R  T  G  K  L  I  L  L  Y  A  I  *  C  I  M  K  E  V  L  F  L  N  I  I  I  K  I  V  A  K  N  T  P  I  I  *  A  Y  I  S  N </second_frame>
            <third_frame>   K  I  A  L  H  C  L  L  L  W  L  S  R  V  C  N  L  F  *  G  R  L  R :   N  S  K  V  K  *  A  K  H  A  S  N  C  W  N  H  *  S  R  D  L  L  V  L  N  T  L  E  V  L  F  P  T  A  M  V  L  L  L  R  L  *  S  L  Y  H  *  *  S  N  G  Y  L  L  S  C  *  W  L  C  K  S  G  M  T  T  *  V  H  Y  H  L  *  G  *  A  V  G  H  I  L  R  R  K  L  Q  S  H  L  E  L  E  V  A  L  *  G  Y  Q  I  L  Q  P  *  R  L  M  :  P  N  N  Q  N  A  R  E  I  R  L  I  Y  F  *  G  L  V  C  C  N  L  S  V  K  L  R  G  *  P  W  K  H  Y  P  R  L  *  N  *  I  S  P  D  *  E  L  S  R  L  S  S  R  K  S  L  L  S  V  L   : A  Y  W  F  C  G  R  L  F  L  P  N  A  W  L  A  A  P  Q  R  W  K  I  Y  H  Q  N  L  L  Q  S  C  L  S  F  W  I  T  W  R  M  L  V  L  L  K  L  L  I  H  *  A  F  A  *  K  V  M  S  Q  R  S  F  K  R  G  R  R  S  W  R  T  C  W  Q  R  A  C  E  Q  G  M  P  F  S  L  E  F  R  A  L  F  F  W  Q  Q  K  Q  F  Y  F  A  E  V  *  L  R  V  G  N  W  R  R  T  P  *  N  V  L  V  P  I  Y  S  L  E  S  W  L  R  L  *  K  I  C  W  L  W  Q  L  C  Q  P  E  F  M  V  H  G  M  *  R  C  L  K  I  *  E  L  Y  S  T  H  T  C  S  R  N  C  Q  L  A  F  L  H  E  C  I  G  R  E  S  *  S  Y  Y  M  Q  Y  N  V  L  *  K  K  Y  C  F  *  I  *  *  *  K  S  *  P  R  T  R  Q  L  Y  E  P  I  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64752" stop="64820"/>
                    <exon start="65182" stop="65503"/>
                    <exon start="65597" stop="65777"/>
                    <exon start="66608" stop="67088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENSTALFASLVIKGLQFVLRQIKKLKGEISKARIKLLEPLIKGPAGFEYLRSSFSNRYGPPTEALISLPLVKQWLSSVMLVAVQEWDDHLSSLSSLRLSSGAHSSEKAPITLRAGGSSLRISDPPTLKTNAEQPECKGDKVDLFLRLGLLQLVCEIEGLTVETLPETLKLNFSRLRAVQAILQKIIVVCTSILVLRQTLLAECLVSSPSEMEDISSKSITKLFKLLDNMEDAGITEVVDTLSLCLEGDEPKKLQARKEIMANVLAKSLRAGDAIFTRVSRTVFLAAKAILLCGSVAEGGQLAENTLKRVGANLLTGKLVEAMKDLLVVATVSARVHGSWYVEVLKNMRAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="77927" PGL_stop="76482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77927" e_stop="76482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="77927" e_stop="76482" e_length="1446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77927" stop="76482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGAGGCCACAGTTCATATTGTTATGAGTTAGGTCAATTCATTTCTTCACCGTCGTCTCCTCAAAACTCCTCCGCTCTTCTGCTATTTCTATTTCAATAATAGATGTAGATATTGAAAATTCAAGTTCATTTATTTTCCACCTCTCTCTCTCTGGTTTATGTTATGTATGCATTTATCAACTTTATTTTTTCAAGTTTACCTATTCTAATTTACGATAGCTATCTTTTTTTTTTCTTCTTTACTCATTAATAATTAGACATTGAATTTGTATTTGAACTGCAGTTAGCTTTAAACTCAGTAAGAACTACATTGAGGTACAATGTATCATATAAAGTCGGGGTTTCTTGATTGACATACGACAAATGGAGAGCTCTGACTATGCATCGGTCTCTCACCAAAAAGGTATGGTAACCTCAAAAAAACTTTCCTTGAATCTGAAGACGAGAAACTTCAATAAGGAAATTTGTGAGGAGCCTGTTGGCCAAGACCATTAATAGGTTTTGATTGAACAACCAATATATAGTCATTCTTGATTATATCTATTAATTTCCTTATTTCGTATCATAGAATAAGAATCTATACTAAAAAAATATTTGTGAGGTTATAATTAGCATATACTCTTAGTCATGGATACACTATAAGCTTCCACAAATGTTACATCTAATATGTATGTGACAAAGGATCAATTGTACATGTAATGGTAAGTCCCAAATCTTACAAATTATATCAGAGACAATTAAATTTTGCCCTTAATTAGCAGTAAACACTCGAGAAAAGTTATTTTGATACCATCATCTTTATATTGGCATTTGTGATATAGCTTAATATCCAATGGCACTATCATGATAGCTAATTTATGTCTTCCTTTCCTCATATTACTTGCCACTGGACTCGCTAATGGGTTCAAAGATTAATTGACAATTAAAATCCTCATTGTGGTCCATTTAAATCTAAAGAGTATGCAAGAGTGCTATGGTTTGTGATGTTACTTTTTGAAAATTGTATCTTGATTAATGTGTTTTACTTTATTATTATCCAGTTTGTTCAAGTTGTGTGATATATTTAGGTGGCATGCTTTCGATTTTTAGCCCTCAAAAGAAGATGGTTGTGTTATTCTTCAAAATATAGAATCAGATTTTGTTATCTTGAGTCAATTGAAGCAAGTTTCCAAGGTGGAAATTGGAAATAATCTGTCAAAACATGAGAAGGTTCAAAAACTTATTATGTAACAGTGGTTAGAAGCTTTAAGTCGCACATATATTTTTGTCTAATGTATGTAAAAAATATAATTAGATCCAAAGTGTATATGAACTTAAACAATTATTTGTTTAATCAAATATGCTGCATTAGTATATTTATCAGATCAACATTAAAGTTGCCTAATGCATGTAATACTTTTAATCTTTATATTTGAATTAGATGTCGTTGAATTAAATTAATTAG</gDNA_template>
            <first_frame> S  R  G  H  S  S  Y  C  Y  E  L  G  Q  F  I  S  S  P  S  S  P  Q  N  S  S  A  L  L  L  F  L  F  Q  *  *  M  *  I  L  K  I  Q  V  H  L  F  S  T  S  L  S  L  V  Y  V  M  Y  A  F  I  N  F  I  F  S  S  L  P  I  L  I  Y  D  S  Y  L  F  F  F  F  F  T  H  *  *  L  D  I  E  F  V  F  E  L  Q  L  A  L  N  S  V  R  T  T  L  R  Y  N  V  S  Y  K  V  G  V  S  *  L  T  Y  D  K  W  R  A  L  T  M  H  R  S  L  T  K  K  V  W  *  P  Q  K  N  F  P  *  I  *  R  R  E  T  S  I  R  K  F  V  R  S  L  L  A  K  T  I  N  R  F  *  L  N  N  Q  Y  I  V  I  L  D  Y  I  Y  *  F  P  Y  F  V  S  *  N  K  N  L  Y  *  K  N  I  C  E  V  I  I  S  I  Y  S  *  S  W  I  H  Y  K  L  P  Q  M  L  H  L  I  C  M  *  Q  R  I  N  C  T  C  N  G  K  S  Q  I  L  Q  I  I  S  E  T  I  K  F  C  P  *  L  A  V  N  T  R  E  K  L  F  *  Y  H  H  L  Y  I  G  I  C  D  I  A  *  Y  P  M  A  L  S  *  *  L  I  Y  V  F  L  S  S  Y  Y  L  P  L  D  S  L  M  G  S  K  I  N  *  Q  L  K  S  S  L  W  S  I  *  I  *  R  V  C  K  S  A  M  V  C  D  V  T  F  *  K  L  Y  L  D  *  C  V  L  L  Y  Y  Y  P  V  C  S  S  C  V  I  Y  L  G  G  M  L  S  I  F  S  P  Q  K  K  M  V  V  L  F  F  K  I  *  N  Q  I  L  L  S  *  V  N  *  S  K  F  P  R  W  K  L  E  I  I  C  Q  N  M  R  R  F  K  N  L  L  C  N  S  G  *  K  L  *  V  A  H  I  F  L  S  N  V  C  K  K  Y  N  *  I  Q  S  V  Y  E  L  K  Q  L  F  V  *  S  N  M  L  H  *  Y  I  Y  Q  I  N  I  K  V  A  *  C  M  *  Y  F  *  S  L  Y  L  N  *  M  S  L  N  *  I  N  * </first_frame>
            <second_frame>  Q  E  A  T  V  H  I  V  M  S  *  V  N  S  F  L  H  R  R  L  L  K  T  P  P  L  F  C  Y  F  Y  F  N  N  R  C  R  Y  *  K  F  K  F  I  Y  F  P  P  L  S  L  W  F  M  L  C  M  H  L  S  T  L  F  F  Q  V  Y  L  F  *  F  T  I  A  I  F  F  F  S  S  L  L  I  N  N  *  T  L  N  L  Y  L  N  C  S  *  L  *  T  Q  *  E  L  H  *  G  T  M  Y  H  I  K  S  G  F  L  D  *  H  T  T  N  G  E  L  *  L  C  I  G  L  S  P  K  R  Y  G  N  L  K  K  T  F  L  E  S  E  D  E  K  L  Q  *  G  N  L  *  G  A  C  W  P  R  P  L  I  G  F  D  *  T  T  N  I  *  S  F  L  I  I  S  I  N  F  L  I  S  Y  H  R  I  R  I  Y  T  K  K  I  F  V  R  L  *  L  A  Y  T  L  S  H  G  Y  T  I  S  F  H  K  C  Y  I  *  Y  V  C  D  K  G  S  I  V  H  V  M  V  S  P  K  S  Y  K  L  Y  Q  R  Q  L  N  F  A  L  N  *  Q  *  T  L  E  K  S  Y  F  D  T  I  I  F  I  L  A  F  V  I  *  L  N  I  Q  W  H  Y  H  D  S  *  F  M  S  S  F  P  H  I  T  C  H  W  T  R  *  W  V  Q  R  L  I  D  N  *  N  P  H  C  G  P  F  K  S  K  E  Y  A  R  V  L  W  F  V  M  L  L  F  E  N  C  I  L  I  N  V  F  Y  F  I  I  I  Q  F  V  Q  V  V  *  Y  I  *  V  A  C  F  R  F  L  A  L  K  R  R  W  L  C  Y  S  S  K  Y  R  I  R  F  C  Y  L  E  S  I  E  A  S  F  Q  G  G  N  W  K  *  S  V  K  T  *  E  G  S  K  T  Y  Y  V  T  V  V  R  S  F  K  S  H  I  Y  F  C  L  M  Y  V  K  N  I  I  R  S  K  V  Y  M  N  L  N  N  Y  L  F  N  Q  I  C  C  I  S  I  F  I  R  S  T  L  K  L  P  N  A  C  N  T  F  N  L  Y  I  *  I  R  C  R  *  I  K  L  I   </second_frame>
            <third_frame>   K  R  P  Q  F  I  L  L  *  V  R  S  I  H  F  F  T  V  V  S  S  K  L  L  R  S  S  A  I  S  I  S  I  I  D  V  D  I  E  N  S  S  S  F  I  F  H  L  S  L  S  G  L  C  Y  V  C  I  Y  Q  L  Y  F  F  K  F  T  Y  S  N  L  R  *  L  S  F  F  F  L  L  Y  S  L  I  I  R  H  *  I  C  I  *  T  A  V  S  F  K  L  S  K  N  Y  I  E  V  Q  C  I  I  *  S  R  G  F  L  I  D  I  R  Q  M  E  S  S  D  Y  A  S  V  S  H  Q  K  G  M  V  T  S  K  K  L  S  L  N  L  K  T  R  N  F  N  K  E  I  C  E  E  P  V  G  Q  D  H  *  *  V  L  I  E  Q  P  I  Y  S  H  S  *  L  Y  L  L  I  S  L  F  R  I  I  E  *  E  S  I  L  K  K  Y  L  *  G  Y  N  *  H  I  L  L  V  M  D  T  L  *  A  S  T  N  V  T  S  N  M  Y  V  T  K  D  Q  L  Y  M  *  W  *  V  P  N  L  T  N  Y  I  R  D  N  *  I  L  P  L  I  S  S  K  H  S  R  K  V  I  L  I  P  S  S  L  Y  W  H  L  *  Y  S  L  I  S  N  G  T  I  M  I  A  N  L  C  L  P  F  L  I  L  L  A  T  G  L  A  N  G  F  K  D  *  L  T  I  K  I  L  I  V  V  H  L  N  L  K  S  M  Q  E  C  Y  G  L  *  C  Y  F  L  K  I  V  S  *  L  M  C  F  T  L  L  L  S  S  L  F  K  L  C  D  I  F  R  W  H  A  F  D  F  *  P  S  K  E  D  G  C  V  I  L  Q  N  I  E  S  D  F  V  I  L  S  Q  L  K  Q  V  S  K  V  E  I  G  N  N  L  S  K  H  E  K  V  Q  K  L  I  M  *  Q  W  L  E  A  L  S  R  T  Y  I  F  V  *  C  M  *  K  I  *  L  D  P  K  C  I  *  T  *  T  I  I  C  L  I  K  Y  A  A  L  V  Y  L  S  D  Q  H  *  S  C  L  M  H  V  I  L  L  I  F  I  F  E  L  D  V  V  E  L  N  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76720" stop="76511"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGSKTYYVTVVRSFKSHIYFCLMYVKNIIRSKVYMNLNNYLFNQICCISIFIRSTLKLPNACNTFNLYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="80590" PGL_stop="78498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80590" e_stop="80458"/>
            <exon e_start="80336" e_stop="80180"/>
            <exon e_start="79097" e_stop="78949"/>
            <exon e_start="78872" e_stop="78596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.409" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80590" e_stop="80458" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80336" e_stop="80180" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.409" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79097" e_stop="78949" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="78948" i_stop="78873" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78872" e_stop="78596" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80590" stop="80458"/>
              <exon start="80336" stop="80180"/>
              <exon start="79097" stop="78949"/>
              <exon start="78872" stop="78596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTATCTTCTATGTTCTCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAG : AGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTT : GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTG : GCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCAC</gDNA_template>
            <first_frame> T  L  S  S  M  F  S  L  I  F  H  R  Y  K  L  V  F  S  L  N  I  F  L  I  L  F  W  *  C  S  K  F  S  V  S  T  L  C  H  R  H  T  K  R   : E  V  V  S  A  S  S  S  *  D  I  S  P  K  *  I  T  S  I  F  R  V  G  I  S  N  N  A  F  Q  S  Q  E  C  *  N  Y  R  L  P  Y  D  M  V  G  G  V  V  *  K  R  V  L :   K  G  Q  K  Y  V  A  L  G  *  T  G  *  E  T  *  *  S  N  C  N  V  R  D  L  G  H  *  E  A  I  *  T  G  C  *  D  W  S  T  L  V  V  H  P  R  Y  Y  A   : G  *  A  D  K  I  L  D  M  T  I  P  A  E  G  P  Y  C  I  Q  T  L  H  E  R  I  E  F  V  G  *  I  I  S  *  N  F  P  L  L  V  F  S  W  K  M  S  P  T  F  T  C  G  R  N  I  V  L  K  M  L  S  R  P  L  *  L  H  S  M  *  K  I  C  C  R  R  *  H  Q  N  F  L  F  Y  C  P  K  E  S  F  C   </first_frame>
            <second_frame>  L  Y  L  L  C  S  L  *  F  F  I  G  T  N  *  F  S  L  *  I  F  S  *  S  C  F  G  S  V  Q  N  F  Q  *  V  P  C  A  I  G  I  Q  S  E  :  R  L  Y  L  L  A  Q  A  K  I  F  R  Q  S  R  *  H  Q  F  S  E  L  G  F  Q  I  M  L  F  N  L  K  N  V  K  I  I  G  C  L  M  T  W  L  E  A  W  S  E  R  E  F   : *  K  V  K  S  M  L  H  L  A  E  L  V  E  K  H  N  D  Q  I  A  T  F  E  T  W  D  T  E  K  P  Y  E  Q  A  V  K  I  G  V  R  W  L  Y  I  P  V  I  M  L  :  A  R  Q  I  K  F  L  I  *  L  F  L  L  K  D  H  I  A  F  K  R  C  M  N  G  L  N  L  L  V  R  L  S  H  E  I  F  L  S  S  C  S  L  G  R  *  A  L  L  S  L  V  A  E  I  S  C  *  K  C  *  A  D  P  F  N  Y  T  L  C  R  K  S  V  A  G  D  S  I  K  I  F  S  F  I  A  Q  K  S  R  F  A  </second_frame>
            <third_frame>   S  I  F  Y  V  L  F  D  F  S  S  V  Q  I  S  F  L  S  K  Y  F  P  N  L  V  L  V  V  F  K  I  F  S  K  Y  L  V  P  *  A  Y  K  A  R :   G  C  I  C  *  L  K  L  R  Y  F  A  K  V  D  N  I  N  F  P  S  W  D  F  K  *  C  F  S  I  S  R  M  L  K  L  S  V  A  L  *  H  G  W  R  R  G  L  K  E  S  F  :  E  R  S  K  V  C  C  T  W  L  N  W  L  R  N  I  M  I  K  L  Q  R  S  R  L  G  T  L  R  S  H  M  N  R  L  L  R  L  E  Y  A  G  C  T  S  P  L  L  C  W :   L  G  R  *  N  S  *  Y  D  Y  S  C  *  R  T  I  L  H  S  N  V  A  *  T  D  *  I  C  W  L  D  Y  L  M  K  F  S  S  P  R  V  L  L  E  D  E  P  Y  F  H  L  W  Q  K  Y  R  V  K  N  A  E  Q  T  P  L  T  T  L  Y  V  E  N  L  L  Q  E  I  A  S  K  F  S  L  L  L  P  K  R  V  V  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78793" stop="78596"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWLDYLMKFSSPRVLLEDEPYFHLWQKYRVKNAEQTPLTTLYVENLLQEIASKFSLLLPKRVVLH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80212" stop="80180"/>
                    <exon start="79097" stop="78949"/>
                    <exon start="78872" stop="78860"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGWRRGLKESFERSKVCCTWLNWLRNIMIKLQRSRLGTLRSHMNRLLRLEYAGCTSPLLCWLGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79529" e_stop="79037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="79529" e_stop="79037" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79529" stop="79037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTGCAATGGTTGGGAATTAGTTTTGCAAAGAAGAAGTTATTTATAATGGGTATTTAGAATTCTCACACTTCTGTTGGGATATTACGGGGTCATTAGTCGCATCAATATTATTGAAATACAAATGGGGTTGGTCGGTGATTGTTCCTGGTATCCTTATTGCTTTTAGTGGCATGATAGTGTTCCTTTTGTTACCCGTTTATCCGAAATCCATTGAATGCAATAAAGATGAAGTGCTATCTCTAGGAAAAGAAGACGAGGAAGTGAATGAACCTCTCTCGAGATCAAACAGAGAAAGAAATCGGCCGTGGGTTTTAGTGAAGCACGGAGGATTCCCGAAGTTGTGCCATCTGGTCTTTGACCTTTTTTTTTTGGTGGCTTACACATTTCTCTAATGTGGTTGTCGTACAACACTAACTGTTCCATGCTGCAGGAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGC</gDNA_template>
            <first_frame> S  C  N  G  W  E  L  V  L  Q  R  R  S  Y  L  *  W  V  F  R  I  L  T  L  L  L  G  Y  Y  G  V  I  S  R  I  N  I  I  E  I  Q  M  G  L  V  G  D  C  S  W  Y  P  Y  C  F  *  W  H  D  S  V  P  F  V  T  R  L  S  E  I  H  *  M  Q  *  R  *  S  A  I  S  R  K  R  R  R  G  S  E  *  T  S  L  E  I  K  Q  R  K  K  S  A  V  G  F  S  E  A  R  R  I  P  E  V  V  P  S  G  L  *  P  F  F  F  G  G  L  H  I  S  L  M  W  L  S  Y  N  T  N  C  S  M  L  Q  E  R  S  K  V  C  C  T  W  L  N  W  L  R  N  I  M  I  K  L  </first_frame>
            <second_frame>  V  A  M  V  G  N  *  F  C  K  E  E  V  I  Y  N  G  Y  L  E  F  S  H  F  C  W  D  I  T  G  S  L  V  A  S  I  L  L  K  Y  K  W  G  W  S  V  I  V  P  G  I  L  I  A  F  S  G  M  I  V  F  L  L  L  P  V  Y  P  K  S  I  E  C  N  K  D  E  V  L  S  L  G  K  E  D  E  E  V  N  E  P  L  S  R  S  N  R  E  R  N  R  P  W  V  L  V  K  H  G  G  F  P  K  L  C  H  L  V  F  D  L  F  F  L  V  A  Y  T  F  L  *  C  G  C  R  T  T  L  T  V  P  C  C  R  K  G  Q  K  Y  V  A  L  G  *  T  G  *  E  T  *  *  S  N  C </second_frame>
            <third_frame>   L  Q  W  L  G  I  S  F  A  K  K  K  L  F  I  M  G  I  *  N  S  H  T  S  V  G  I  L  R  G  H  *  S  H  Q  Y  Y  *  N  T  N  G  V  G  R  *  L  F  L  V  S  L  L  L  L  V  A  *  *  C  S  F  C  Y  P  F  I  R  N  P  L  N  A  I  K  M  K  C  Y  L  *  E  K  K  T  R  K  *  M  N  L  S  R  D  Q  T  E  K  E  I  G  R  G  F  *  *  S  T  E  D  S  R  S  C  A  I  W  S  L  T  F  F  F  W  W  L  T  H  F  S  N  V  V  V  V  Q  H  *  L  F  H  A  A  G  K  V  K  S  M  L  H  L  A  E  L  V  E  K  H  N  D  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79507" stop="79136"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCKEEVIYNGYLEFSHFCWDITGSLVASILLKYKWGWSVIVPGILIAFSGMIVFLLLPVYPKSIECNKDEVLSLGKEDEEVNEPLSRSNRERNRPWVLVKHGGFPKLCHLVFDLFFLVAYTFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="80572" e_stop="80458"/>
            <exon e_start="80336" e_stop="80180"/>
            <exon e_start="79097" e_stop="78498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="0.983"/>
          <exon-intron don_prob="0.409" acc_prob="0.993" e_score="0.943"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="80572" e_stop="80458" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="80457" i_stop="80337" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="80336" e_stop="80180" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.409" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80179" i_stop="79098" i_length="1082"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="79097" e_stop="78498" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80572" stop="80458"/>
              <exon start="80336" stop="80180"/>
              <exon start="79097" stop="78498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTGATTTTTCATCGGTACAAATTAGTTTTCTCTCTAAATATTTTCCTAATCTTGTTTTGGTAGTGTTCAAAATTTTCAGTAAGTACCTTGTGCCATAGGCATACAAAGCGAG : AGGTTGTATCTGCTAGCTCAAGCTAAGATATTTCGCCAAAGTAGATAACATCAATTTTCCGAGTTGGGATTTCAAATAATGCTTTTCAATCTCAAGAATGTTAAAATTATCGGTTGCCTTATGACATGGTTGGAGGCGTGGTCTGAAAGAGAGTTTT : GAAAGGTCAAAAGTATGTTGCACTTGGCTGAACTGGTTGAGAAACATAATGATCAAATTGCAACGTTCGAGACTTGGGACACTGAGAAGCCATATGAACAGGCTGTTAAGATTGGAGTACGCTGGTTGTACATCCCCGTTATTATGCTGGTAAGTAATAAATTCAACTAGAAAGAAAGTCTATCATCAATTATTTCTTCTCCCTGAAAAAAAATTATTTCTACAGGCTAGGCAGATAAAATTCTTGATATGACTATTCCTGCTGAAGGACCATATTGCATTCAAACGTTGCATGAACGGATTGAATTTGTTGGTTAGATTATCTCATGAAATTTTCCTCTCCTCGTGTTCTCTTGGAAGATGAGCCCTACTTTCACTTGTGGCAGAAATATCGTGTTAAAAATGCTGAGCAGACCCCTTTAACTACACTCTATGTAGAAAATCTGTTGCAGGAGATAGCATCAAAATTTTCTCTTTTATTGCCCAAAAGAGTCGTTTTGCACAGTAAGTCAAGTTTCAGTTTTTTTGGTATCGTATCTGAGTGAAAGAATATGTTTTTTTTCTTTTCAATTCTAGAAAAAATATTCCACAACAGTTGAAG</gDNA_template>
            <first_frame> S  L  I  F  H  R  Y  K  L  V  F  S  L  N  I  F  L  I  L  F  W  *  C  S  K  F  S  V  S  T  L  C  H  R  H  T  K  R   : E  V  V  S  A  S  S  S  *  D  I  S  P  K  *  I  T  S  I  F  R  V  G  I  S  N  N  A  F  Q  S  Q  E  C  *  N  Y  R  L  P  Y  D  M  V  G  G  V  V  *  K  R  V  L :   K  G  Q  K  Y  V  A  L  G  *  T  G  *  E  T  *  *  S  N  C  N  V  R  D  L  G  H  *  E  A  I  *  T  G  C  *  D  W  S  T  L  V  V  H  P  R  Y  Y  A  G  K  *  *  I  Q  L  E  R  K  S  I  I  N  Y  F  F  S  L  K  K  N  Y  F  Y  R  L  G  R  *  N  S  *  Y  D  Y  S  C  *  R  T  I  L  H  S  N  V  A  *  T  D  *  I  C  W  L  D  Y  L  M  K  F  S  S  P  R  V  L  L  E  D  E  P  Y  F  H  L  W  Q  K  Y  R  V  K  N  A  E  Q  T  P  L  T  T  L  Y  V  E  N  L  L  Q  E  I  A  S  K  F  S  L  L  L  P  K  R  V  V  L  H  S  K  S  S  F  S  F  F  G  I  V  S  E  *  K  N  M  F  F  F  F  S  I  L  E  K  I  F  H  N  S  *   </first_frame>
            <second_frame>  L  *  F  F  I  G  T  N  *  F  S  L  *  I  F  S  *  S  C  F  G  S  V  Q  N  F  Q  *  V  P  C  A  I  G  I  Q  S  E  :  R  L  Y  L  L  A  Q  A  K  I  F  R  Q  S  R  *  H  Q  F  S  E  L  G  F  Q  I  M  L  F  N  L  K  N  V  K  I  I  G  C  L  M  T  W  L  E  A  W  S  E  R  E  F   : *  K  V  K  S  M  L  H  L  A  E  L  V  E  K  H  N  D  Q  I  A  T  F  E  T  W  D  T  E  K  P  Y  E  Q  A  V  K  I  G  V  R  W  L  Y  I  P  V  I  M  L  V  S  N  K  F  N  *  K  E  S  L  S  S  I  I  S  S  P  *  K  K  I  I  S  T  G  *  A  D  K  I  L  D  M  T  I  P  A  E  G  P  Y  C  I  Q  T  L  H  E  R  I  E  F  V  G  *  I  I  S  *  N  F  P  L  L  V  F  S  W  K  M  S  P  T  F  T  C  G  R  N  I  V  L  K  M  L  S  R  P  L  *  L  H  S  M  *  K  I  C  C  R  R  *  H  Q  N  F  L  F  Y  C  P  K  E  S  F  C  T  V  S  Q  V  S  V  F  L  V  S  Y  L  S  E  R  I  C  F  F  S  F  Q  F  *  K  K  Y  S  T  T  V  E  </second_frame>
            <third_frame>   F  D  F  S  S  V  Q  I  S  F  L  S  K  Y  F  P  N  L  V  L  V  V  F  K  I  F  S  K  Y  L  V  P  *  A  Y  K  A  R :   G  C  I  C  *  L  K  L  R  Y  F  A  K  V  D  N  I  N  F  P  S  W  D  F  K  *  C  F  S  I  S  R  M  L  K  L  S  V  A  L  *  H  G  W  R  R  G  L  K  E  S  F  :  E  R  S  K  V  C  C  T  W  L  N  W  L  R  N  I  M  I  K  L  Q  R  S  R  L  G  T  L  R  S  H  M  N  R  L  L  R  L  E  Y  A  G  C  T  S  P  L  L  C  W  *  V  I  N  S  T  R  K  K  V  Y  H  Q  L  F  L  L  P  E  K  K  L  F  L  Q  A  R  Q  I  K  F  L  I  *  L  F  L  L  K  D  H  I  A  F  K  R  C  M  N  G  L  N  L  L  V  R  L  S  H  E  I  F  L  S  S  C  S  L  G  R  *  A  L  L  S  L  V  A  E  I  S  C  *  K  C  *  A  D  P  F  N  Y  T  L  C  R  K  S  V  A  G  D  S  I  K  I  F  S  F  I  A  Q  K  S  R  F  A  Q  *  V  K  F  Q  F  F  W  Y  R  I  *  V  K  E  Y  V  F  F  L  F  N  S  R  K  N  I  P  Q  Q  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78793" stop="78554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWLDYLMKFSSPRVLLEDEPYFHLWQKYRVKNAEQTPLTTLYVENLLQEIASKFSLLLPKRVVLHSKSSFSFFGIVSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="83809" PGL_stop="81172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83809" e_stop="83760"/>
            <exon e_start="81725" e_stop="81172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.137" acc_prob="0.956" e_score="0.880"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.880">
            <gDNA_exon_boundary e_start="83809" e_stop="83760" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.137" acc_prob="0.956">
            <gDNA_intron_boundary i_start="83759" i_stop="81726" i_length="2034"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="81725" e_stop="81172" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83809" stop="83760"/>
              <exon start="81725" stop="81172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGGCATATATATGTATTTTTTTTAAATTCTCTTCATCTTCATTTTAG : GTAATTGCCGGTCAAAATCATGTTTACAACGATGATGTTCTTTGATATTTAATATTACAAGTAAATCTTGAAGACTATTATTAAATTATCCTACTCTACTTAAATAGTAGGCCTTTTGTTTCAAGTAGCCTGCACTAAATGTTAATATCCATTGATGATATGTTATTGAAAATACCACGGGCTTAATATGGTGCTTATAAATTAATTCAGATAAAGGAGATAATAGTGTGAAGGATTTCTAGCAGGAAATGAGGTTGCTTGTTTCACATGGTTAGTAGCCTTTTAATCTGTTTAACATGATAAGGTAATCTACAATAAAATGTTCCAACTTATGCAATAGGAGTTGCATGTACAGAGAAGATCAGGAAGGGAAACAATCCACTGTCTTCTCACTTTTAGAAACTATTGCTCTGTCGAAATACTGATAATTATATGAAGTTATAGCTTGAAACTAATTGAAGTTTCTATGAAATATATATTATACAGGGATTGCTGAAACAAAAAAATATGTTAAGAAATTTGAGTTGAATATCTTGTATTATATGAAGATCAAA</gDNA_template>
            <first_frame> Y  W  H  I  Y  V  F  F  L  N  S  L  H  L  H  F  R :   *  L  P  V  K  I  M  F  T  T  M  M  F  F  D  I  *  Y  Y  K  *  I  L  K  T  I  I  K  L  S  Y  S  T  *  I  V  G  L  L  F  Q  V  A  C  T  K  C  *  Y  P  L  M  I  C  Y  *  K  Y  H  G  L  N  M  V  L  I  N  *  F  R  *  R  R  *  *  C  E  G  F  L  A  G  N  E  V  A  C  F  T  W  L  V  A  F  *  S  V  *  H  D  K  V  I  Y  N  K  M  F  Q  L  M  Q  *  E  L  H  V  Q  R  R  S  G  R  E  T  I  H  C  L  L  T  F  R  N  Y  C  S  V  E  I  L  I  I  I  *  S  Y  S  L  K  L  I  E  V  S  M  K  Y  I  L  Y  R  D  C  *  N  K  K  I  C  *  E  I  *  V  E  Y  L  V  L  Y  E  D  Q  </first_frame>
            <second_frame>  I  G  I  Y  M  Y  F  F  *  I  L  F  I  F  I  L   : G  N  C  R  S  K  S  C  L  Q  R  *  C  S  L  I  F  N  I  T  S  K  S  *  R  L  L  L  N  Y  P  T  L  L  K  *  *  A  F  C  F  K  *  P  A  L  N  V  N  I  H  *  *  Y  V  I  E  N  T  T  G  L  I  W  C  L  *  I  N  S  D  K  G  D  N  S  V  K  D  F  *  Q  E  M  R  L  L  V  S  H  G  *  *  P  F  N  L  F  N  M  I  R  *  S  T  I  K  C  S  N  L  C  N  R  S  C  M  Y  R  E  D  Q  E  G  K  Q  S  T  V  F  S  L  L  E  T  I  A  L  S  K  Y  *  *  L  Y  E  V  I  A  *  N  *  L  K  F  L  *  N  I  Y  Y  T  G  I  A  E  T  K  K  Y  V  K  K  F  E  L  N  I  L  Y  Y  M  K  I  K </second_frame>
            <third_frame>   L  A  Y  I  C  I  F  F  K  F  S  S  S  S  F  *  :  V  I  A  G  Q  N  H  V  Y  N  D  D  V  L  *  Y  L  I  L  Q  V  N  L  E  D  Y  Y  *  I  I  L  L  Y  L  N  S  R  P  F  V  S  S  S  L  H  *  M  L  I  S  I  D  D  M  L  L  K  I  P  R  A  *  Y  G  A  Y  K  L  I  Q  I  K  E  I  I  V  *  R  I  S  S  R  K  *  G  C  L  F  H  M  V  S  S  L  L  I  C  L  T  *  *  G  N  L  Q  *  N  V  P  T  Y  A  I  G  V  A  C  T  E  K  I  R  K  G  N  N  P  L  S  S  H  F  *  K  L  L  L  C  R  N  T  D  N  Y  M  K  L  *  L  E  T  N  *  S  F  Y  E  I  Y  I  I  Q  G  L  L  K  Q  K  N  M  L  R  N  L  S  *  I  S  C  I  I  *  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0097J14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83804" e_stop="83760"/>
            <exon e_start="83340" e_stop="82594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.137" acc_prob="0.991" e_score="0.956"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="83804" e_stop="83760" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.137" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83759" i_stop="83341" i_length="419"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="83340" e_stop="82594" e_length="747"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83804" stop="83760"/>
              <exon start="83340" stop="82594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATATATATGTATTTTTTTTAAATTCTCTTCATCTTCATTTTAG : GTTAACTGTTTGGATGATTGTAGTGTTGATATCTTTGATGATCAATCGGTGATTACATTATTAAAGGTAATATTTGCATATCTTTTTTCTCTTGATATATCCCCATGCTTTTCAGTTTTTATCGTGCTTTTAATTTTCTTTTGTTTCATTCAGAGGAGATCCATGATTACCTCATCGTGTTTCTTAGAATATCAAAAGATGCCTTGTTAGATGGTTGGATTTGCACAACATTCAATTGGCTTAGAATAATAGAATGTAATATATAAATAAGATGCTTGTGTTGCCTTCTTTCATTACGCTCTATGATTTTTTAAATGCGGTCATGCGAATTCAACTTAAAATAACGATTTCGCTTCAGCATCTTCGATATCAAATCATATCTTAGAATCTAGGTACAAGTATATTTCATTGAGGTATGTCACATATGATGCTTACTTGGATCAGGTGCAAGGCCCCGAGAAATGGTATCATATAATTTCAACGGAGTGTTAAATATGTTATTTTTTATACTTTTATTATTACTAGGCTACATCGACTGTCTTTTCATTTTTCTTCTCTTAAGTTATGTTTTGGAACATTGTAAAATGTTTGATACCTCACTAATGAATATCTTTTTTCTTTTAATTGGTAGTAATTTCAATGCATTTGCTAATGATTTTTTTTTTTAAAAAAAAAGATTCAGTTAAGAGTTTTGTATAATGTAGATCTTTATATGGGATAGTCTTATTCATGCTATGAGCTTACTTC</gDNA_template>
            <first_frame> A  Y  I  C  I  F  F  K  F  S  S  S  S  F  *  :  V  N  C  L  D  D  C  S  V  D  I  F  D  D  Q  S  V  I  T  L  L  K  V  I  F  A  Y  L  F  S  L  D  I  S  P  C  F  S  V  F  I  V  L  L  I  F  F  C  F  I  Q  R  R  S  M  I  T  S  S  C  F  L  E  Y  Q  K  M  P  C  *  M  V  G  F  A  Q  H  S  I  G  L  E  *  *  N  V  I  Y  K  *  D  A  C  V  A  F  F  H  Y  A  L  *  F  F  K  C  G  H  A  N  S  T  *  N  N  D  F  A  S  A  S  S  I  S  N  H  I  L  E  S  R  Y  K  Y  I  S  L  R  Y  V  T  Y  D  A  Y  L  D  Q  V  Q  G  P  E  K  W  Y  H  I  I  S  T  E  C  *  I  C  Y  F  L  Y  F  Y  Y  Y  *  A  T  S  T  V  F  S  F  F  F  S  *  V  M  F  W  N  I  V  K  C  L  I  P  H  *  *  I  S  F  F  F  *  L  V  V  I  S  M  H  L  L  M  I  F  F  F  K  K  K  D  S  V  K  S  F  V  *  C  R  S  L  Y  G  I  V  L  F  M  L  *  A  Y  F </first_frame>
            <second_frame>  H  I  Y  V  F  F  L  N  S  L  H  L  H  F  R :   L  T  V  W  M  I  V  V  L  I  S  L  M  I  N  R  *  L  H  Y  *  R  *  Y  L  H  I  F  F  L  L  I  Y  P  H  A  F  Q  F  L  S  C  F  *  F  S  F  V  S  F  R  G  D  P  *  L  P  H  R  V  S  *  N  I  K  R  C  L  V  R  W  L  D  L  H  N  I  Q  L  A  *  N  N  R  M  *  Y  I  N  K  M  L  V  L  P  S  F  I  T  L  Y  D  F  L  N  A  V  M  R  I  Q  L  K  I  T  I  S  L  Q  H  L  R  Y  Q  I  I  S  *  N  L  G  T  S  I  F  H  *  G  M  S  H  M  M  L  T  W  I  R  C  K  A  P  R  N  G  I  I  *  F  Q  R  S  V  K  Y  V  I  F  Y  T  F  I  I  T  R  L  H  R  L  S  F  H  F  S  S  L  K  L  C  F  G  T  L  *  N  V  *  Y  L  T  N  E  Y  L  F  S  F  N  W  *  *  F  Q  C  I  C  *  *  F  F  F  L  K  K  K  I  Q  L  R  V  L  Y  N  V  D  L  Y  M  G  *  S  Y  S  C  Y  E  L  T   </second_frame>
            <third_frame>   I  Y  M  Y  F  F  *  I  L  F  I  F  I  L   : G  *  L  F  G  *  L  *  C  *  Y  L  *  *  S  I  G  D  Y  I  I  K  G  N  I  C  I  S  F  F  S  *  Y  I  P  M  L  F  S  F  Y  R  A  F  N  F  L  L  F  H  S  E  E  I  H  D  Y  L  I  V  F  L  R  I  S  K  D  A  L  L  D  G  W  I  C  T  T  F  N  W  L  R  I  I  E  C  N  I  *  I  R  C  L  C  C  L  L  S  L  R  S  M  I  F  *  M  R  S  C  E  F  N  L  K  *  R  F  R  F  S  I  F  D  I  K  S  Y  L  R  I  *  V  Q  V  Y  F  I  E  V  C  H  I  *  C  L  L  G  S  G  A  R  P  R  E  M  V  S  Y  N  F  N  G  V  L  N  M  L  F  F  I  L  L  L  L  L  G  Y  I  D  C  L  F  I  F  L  L  L  S  Y  V  L  E  H  C  K  M  F  D  T  S  L  M  N  I  F  F  L  L  I  G  S  N  F  N  A  F  A  N  D  F  F  F  *  K  K  R  F  S  *  E  F  C  I  M  *  I  F  I  W  D  S  L  I  H  A  M  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82912" stop="82673"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLGSGARPREMVSYNFNGVLNMLFFILLLLLGYIDCLFIFLLLSYVLEHCKMFDTSLMNIFFLLIGSNFNAFANDFFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83340" stop="83131"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNCLDDCSVDIFDDQSVITLLKVIFAYLFSLDISPCFSVFIVLLIFFCFIQRRSMITSSCFLEYQKMPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="84297" PGL_stop="87823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84297" e_stop="84421"/>
            <exon e_start="85352" e_stop="85594"/>
            <exon e_start="86709" e_stop="86840"/>
            <exon e_start="86956" e_stop="87072"/>
            <exon e_start="87143" e_stop="87823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84297" e_stop="84421" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.943">
            <gDNA_intron_boundary i_start="84422" i_stop="85351" i_length="930"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85352" e_stop="85594" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85595" i_stop="86708" i_length="1114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86709" e_stop="86840" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="86841" i_stop="86955" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86956" e_stop="87072" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="87073" i_stop="87142" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87143" e_stop="87823" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84297" stop="84421"/>
              <exon start="85352" stop="85594"/>
              <exon start="86709" stop="86840"/>
              <exon start="86956" stop="87072"/>
              <exon start="87143" stop="87823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAGGCCCAAACCCCCCTCTCCCCGATCATTGCTCTCTGTTAATCGACGCCGTGGTCGAGTCCCGCCGTCCATCCCGGACGTTTTCTCCGGCTAATTCTTCATCTCTATTGTGTCTATCCAAG : ATGGCATCACTTCAAGAAAGCTTGCAAAGGTTCAAGAAGCAGCAAGAGAAGTGCCAAGCTATTACTAGTATGGCTGCCAGAGCAGGACCTTCCAAGGGAGCTCCTCCAAGGCCAGCTAATGCAAAACCTCCTGCACCTGCAGTCAAATTTTCAAATGACACGGAAAGGCTCCAGCATATAAATACTATAAGGAAAGGGCCTGTTGGGTCTCAGATGAAACGTGTCATAGACTTGCTTCTGGAG : ACAAGGCAAGCTTTCACACCAGAACAGATCAATGAAGCATGTTATGTTGATTTAATTGGCAATAAACCTGTGTTTGACAGTTTGAGGAAAAACGTCAAAGTATATTATGATGGCAATCGCTTTTCTTATAAG : TCGAAACATGCTCTGAAAAATAAAGAGCAACTACTTATCTTGATAAGAAAATTCCCTGAGGGTATTGCTGTTATCGACCTCAAGGATGCATACCCGACTGTCATGGAGGACCTGCAG : GCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCGCCTTCCCAAATGATCCACGAGTACCCATTAAGGTTGATGATGATTTGAAACAGCTATTCAGAGGTATTGAATTACCACGTGACATGCTTGATATCGAAAGGGATCTGCAGAAGAACGGGATGAAACCTGCTACCAACACTGCAAAGAGAAGGGCAATGGCACAAGTCCATGGCATTGCTCCCAAGCCCAAAACCAAAAAGAAGAAGCATGAGATTAGCAAGAGGACTAAGCTTACAAATGCTCATCTTCCAGAACTCTTCAAACTTTAGATATCTATTGGTTCATAAACTTCTCCCGAATAGAAAACAAGCACTGGAGTTCCTCCTCTCCTTTCCAGATTCTGTTGTCTAGTGACTGAACCTTGAATACCTAATGCTTTACCATACGTCTAGCATGAAGAGTTCTTTACGAATGGCTAAAGCCTTGGTGTTTGGTTCCTATTCACAAGGTTGTGTTTTGTTTTTACTGACCTGGTAAACTTGGGGTGGGAATATGATACTAATAATTTGTGATTTTATTACTGACTTGGGTTTTTGGACCATCAAATTGTTATGTTCATGAAGATCAACATCATTTTGTATCATATTGTTTAATATCAATATATATTACGATTAAAATTA</gDNA_template>
            <first_frame> L  K  A  Q  T  P  L  S  P  I  I  A  L  C  *  S  T  P  W  S  S  P  A  V  H  P  G  R  F  L  R  L  I  L  H  L  Y  C  V  Y  P  R :   W  H  H  F  K  K  A  C  K  G  S  R  S  S  K  R  S  A  K  L  L  L  V  W  L  P  E  Q  D  L  P  R  E  L  L  Q  G  Q  L  M  Q  N  L  L  H  L  Q  S  N  F  Q  M  T  R  K  G  S  S  I  *  I  L  *  G  K  G  L  L  G  L  R  *  N  V  S  *  T  C  F  W  R :   Q  G  K  L  S  H  Q  N  R  S  M  K  H  V  M  L  I  *  L  A  I  N  L  C  L  T  V  *  G  K  T  S  K  Y  I  M  M  A  I  A  F  L  I  S :   R  N  M  L  *  K  I  K  S  N  Y  L  S  *  *  E  N  S  L  R  V  L  L  L  S  T  S  R  M  H  T  R  L  S  W  R  T  C  R :   L  S  K  V  L  V  K  Y  G  C  C  Q  I  L  T  P  R  K  T  S  P  S  Q  M  I  H  E  Y  P  L  R  L  M  M  I  *  N  S  Y  S  E  V  L  N  Y  H  V  T  C  L  I  S  K  G  I  C  R  R  T  G  *  N  L  L  P  T  L  Q  R  E  G  Q  W  H  K  S  M  A  L  L  P  S  P  K  P  K  R  R  S  M  R  L  A  R  G  L  S  L  Q  M  L  I  F  Q  N  S  S  N  F  R  Y  L  L  V  H  K  L  L  P  N  R  K  Q  A  L  E  F  L  L  S  F  P  D  S  V  V  *  *  L  N  L  E  Y  L  M  L  Y  H  T  S  S  M  K  S  S  L  R  M  A  K  A  L  V  F  G  S  Y  S  Q  G  C  V  L  F  L  L  T  W  *  T  W  G  G  N  M  I  L  I  I  C  D  F  I  T  D  L  G  F  W  T  I  K  L  L  C  S  *  R  S  T  S  F  C  I  I  L  F  N  I  N  I  Y  Y  D  *  N   </first_frame>
            <second_frame>  *  R  P  K  P  P  S  P  R  S  L  L  S  V  N  R  R  R  G  R  V  P  P  S  I  P  D  V  F  S  G  *  F  F  I  S  I  V  S  I  Q   : D  G  I  T  S  R  K  L  A  K  V  Q  E  A  A  R  E  V  P  S  Y  Y  *  Y  G  C  Q  S  R  T  F  Q  G  S  S  S  K  A  S  *  C  K  T  S  C  T  C  S  Q  I  F  K  *  H  G  K  A  P  A  Y  K  Y  Y  K  E  R  A  C  W  V  S  D  E  T  C  H  R  L  A  S  G   : D  K  A  S  F  H  T  R  T  D  Q  *  S  M  L  C  *  F  N  W  Q  *  T  C  V  *  Q  F  E  E  K  R  Q  S  I  L  *  W  Q  S  L  F  L  *   : V  E  T  C  S  E  K  *  R  A  T  T  Y  L  D  K  K  I  P  *  G  Y  C  C  Y  R  P  Q  G  C  I  P  D  C  H  G  G  P  A   : G  S  Q  R  C  W  S  N  M  A  A  V  K  F  *  L  P  G  R  H  R  L  P  K  *  S  T  S  T  H  *  G  *  *  *  F  E  T  A  I  Q  R  Y  *  I  T  T  *  H  A  *  Y  R  K  G  S  A  E  E  R  D  E  T  C  Y  Q  H  C  K  E  K  G  N  G  T  S  P  W  H  C  S  Q  A  Q  N  Q  K  E  E  A  *  D  *  Q  E  D  *  A  Y  K  C  S  S  S  R  T  L  Q  T  L  D  I  Y  W  F  I  N  F  S  R  I  E  N  K  H  W  S  S  S  S  P  F  Q  I  L  L  S  S  D  *  T  L  N  T  *  C  F  T  I  R  L  A  *  R  V  L  Y  E  W  L  K  P  W  C  L  V  P  I  H  K  V  V  F  C  F  Y  *  P  G  K  L  G  V  G  I  *  Y  *  *  F  V  I  L  L  L  T  W  V  F  G  P  S  N  C  Y  V  H  E  D  Q  H  H  F  V  S  Y  C  L  I  S  I  Y  I  T  I  K  I  </second_frame>
            <third_frame>   K  G  P  N  P  P  L  P  D  H  C  S  L  L  I  D  A  V  V  E  S  R  R  P  S  R  T  F  S  P  A  N  S  S  S  L  L  C  L  S  K  :  M  A  S  L  Q  E  S  L  Q  R  F  K  K  Q  Q  E  K  C  Q  A  I  T  S  M  A  A  R  A  G  P  S  K  G  A  P  P  R  P  A  N  A  K  P  P  A  P  A  V  K  F  S  N  D  T  E  R  L  Q  H  I  N  T  I  R  K  G  P  V  G  S  Q  M  K  R  V  I  D  L  L  L  E  :  T  R  Q  A  F  T  P  E  Q  I  N  E  A  C  Y  V  D  L  I  G  N  K  P  V  F  D  S  L  R  K  N  V  K  V  Y  Y  D  G  N  R  F  S  Y  K  :  S  K  H  A  L  K  N  K  E  Q  L  L  I  L  I  R  K  F  P  E  G  I  A  V  I  D  L  K  D  A  Y  P  T  V  M  E  D  L  Q  :  A  L  K  G  A  G  Q  I  W  L  L  S  N  F  D  S  Q  E  D  I  A  F  P  N  D  P  R  V  P  I  K  V  D  D  D  L  K  Q  L  F  R  G  I  E  L  P  R  D  M  L  D  I  E  R  D  L  Q  K  N  G  M  K  P  A  T  N  T  A  K  R  R  A  M  A  Q  V  H  G  I  A  P  K  P  K  T  K  K  K  K  H  E  I  S  K  R  T  K  L  T  N  A  H  L  P  E  L  F  K  L  *  I  S  I  G  S  *  T  S  P  E  *  K  T  S  T  G  V  P  P  L  L  S  R  F  C  C  L  V  T  E  P  *  I  P  N  A  L  P  Y  V  *  H  E  E  F  F  T  N  G  *  S  L  G  V  W  F  L  F  T  R  L  C  F  V  F  T  D  L  V  N  L  G  W  E  Y  D  T  N  N  L  *  F  Y  Y  *  L  G  F  L  D  H  Q  I  V  M  F  M  K  I  N  I  I  L  Y  H  I  V  *  Y  Q  Y  I  L  R  L  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84299" stop="84421"/>
                    <exon start="85352" stop="85594"/>
                    <exon start="86709" stop="86840"/>
                    <exon start="86956" stop="87072"/>
                    <exon start="87143" stop="87472"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGPNPPLPDHCSLLIDAVVESRRPSRTFSPANSSSLLCLSKMASLQESLQRFKKQQEKCQAITSMAARAGPSKGAPPRPANAKPPAPAVKFSNDTERLQHINTIRKGPVGSQMKRVIDLLLETRQAFTPEQINEACYVDLIGNKPVFDSLRKNVKVYYDGNRFSYKSKHALKNKEQLLILIRKFPEGIAVIDLKDAYPTVMEDLQALKGAGQIWLLSNFDSQEDIAFPNDPRVPIKVDDDLKQLFRGIELPRDMLDIERDLQKNGMKPATNTAKRRAMAQVHGIAPKPKTKKKKHEISKRTKLTNAHLPELFKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="91426" PGL_stop="88159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91426" e_stop="91367"/>
            <exon e_start="91294" e_stop="91178"/>
            <exon e_start="90294" e_stop="90073"/>
            <exon e_start="89775" e_stop="89676"/>
            <exon e_start="89285" e_stop="89211"/>
            <exon e_start="89132" e_stop="89054"/>
            <exon e_start="88872" e_stop="88857"/>
            <exon e_start="88763" e_stop="88683"/>
            <exon e_start="88595" e_stop="88513"/>
            <exon e_start="88432" e_stop="88159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.550" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="0.987"/>
          <exon-intron don_prob="0.927" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91426" e_stop="91367" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91366" i_stop="91295" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91294" e_stop="91178" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.907">
            <gDNA_intron_boundary i_start="91177" i_stop="90295" i_length="883"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90294" e_stop="90073" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.550" acc_prob="0.888">
            <gDNA_intron_boundary i_start="90072" i_stop="89776" i_length="297"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89775" e_stop="89676" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.973">
            <gDNA_intron_boundary i_start="89675" i_stop="89286" i_length="390"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89285" e_stop="89211" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.771">
            <gDNA_intron_boundary i_start="89210" i_stop="89133" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="89132" e_stop="89054" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89053" i_stop="88873" i_length="181"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="88872" e_stop="88857" e_length="16"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88856" i_stop="88764" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88763" e_stop="88683" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.859" acc_prob="0.845">
            <gDNA_intron_boundary i_start="88682" i_stop="88596" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="88595" e_stop="88513" e_length="83"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.930">
            <gDNA_intron_boundary i_start="88512" i_stop="88433" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="88432" e_stop="88159" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91426" stop="91367"/>
              <exon start="91294" stop="91178"/>
              <exon start="90294" stop="90073"/>
              <exon start="89775" stop="89676"/>
              <exon start="89285" stop="89211"/>
              <exon start="89132" stop="89054"/>
              <exon start="88872" stop="88857"/>
              <exon start="88763" stop="88683"/>
              <exon start="88595" stop="88560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88706" stop="88683"/>
              <exon start="88595" stop="88513"/>
              <exon start="88432" stop="88159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344943" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAACAGTTGCTGTTCAGTCCTTTGTCTCTGCTCCACTGCAAATTCCCAATGTAACACAG : TTCAAGATTGGAATTTGTCAGCTGATAGTTACCACAGAGAAGAGTGCAAACATCTTCAATGCTCGTAGTCTGATTCAAACTGCTGCAGAACAAGGTGCAACTCTTATACTTTTGCCT : GAAATGTGGAATTGCCCTTATTCAACTGACTTGTTCGCAAAGTTTGCTGAGGAGTTCAGCGATATAGACAGTGCCCCATCATTGCTTATGTTATCTGAAGTGGCTTCTTCCTTAGGAGTCACCATTATAGGTGGATCGATTCCGGAAAAGGATGCTGGTCAGCTGTACAATAGCTGCCCTGTGTTTGGGCCTAATGGAGAGTTGAAGGCTAAGCACAGAAAA : ATACATTTGTTTGACATGGGTAAGCCACTTCCGGGAGAGGTCCAATTTAAGGAATCAGTTAACATTTCAGCAGGAGAGAAGCCTACAGTTGTTGATACAG : ATTTTGGACGCATTGGAATAGGAATTTGTCATGATATACGATTTCCTGAGCTGGCAATGTCATACAGTGCCCGAG : GTGCTCATTTAATATGTTACCCTGGAGCATTCAACATGAGTACTGGGGCAACCCTGTGGGAACTGGAGCAAAGAACAAG : GGCAGTAGATAACCAG : CTTTATGTGGCATCTTGCTCCCTGTCTCGAGATTCAGCCAGTAGCTACATGATATGGGGTCACTCCACTGTGGTTGGACCG : ATGGGTAAAATTATTGCAACCACTGGGCATGAGGAAGCAGCTCTAATTGCTGAAATTGATTATGCTGCGATTCAATGGACAAG : GGAAAGCCTCCCTTTGGAGAGCCAGAAGCGCAACGACATCTATCAATTCGTAGACTTGCTCAGAGAAAGTCTCAACTCCTAAGAGGCTTTAAGAGCAGGACATCTTGATCAGCTAGCATATCATAGTTCTGAAATAGGTATTTGTGGGAGTTCTTACCAAGAAAGTTGTTTTGCTTATTTTGTTGGCAATCATGGTTGTATCTTCTTTTTATGGTCATTCCAAAAGACATTAGTTAACAAATCTGGTAAAGTTTGGCATCTCTTCAAGACACTT</gDNA_template>
            <first_frame> A  T  V  A  V  Q  S  F  V  S  A  P  L  Q  I  P  N  V  T  Q  :  F  K  I  G  I  C  Q  L  I  V  T  T  E  K  S  A  N  I  F  N  A  R  S  L  I  Q  T  A  A  E  Q  G  A  T  L  I  L  L  P  :  E  M  W  N  C  P  Y  S  T  D  L  F  A  K  F  A  E  E  F  S  D  I  D  S  A  P  S  L  L  M  L  S  E  V  A  S  S  L  G  V  T  I  I  G  G  S  I  P  E  K  D  A  G  Q  L  Y  N  S  C  P  V  F  G  P  N  G  E  L  K  A  K  H  R  K  :  I  H  L  F  D  M  G  K  P  L  P  G  E  V  Q  F  K  E  S  V  N  I  S  A  G  E  K  P  T  V  V  D  T   : D  F  G  R  I  G  I  G  I  C  H  D  I  R  F  P  E  L  A  M  S  Y  S  A  R   : G  A  H  L  I  C  Y  P  G  A  F  N  M  S  T  G  A  T  L  W  E  L  E  Q  R  T  R :   A  V  D  N  Q  :  L  Y  V  A  S  C  S  L  S  R  D  S  A  S  S  Y  M  I  W  G  H  S  T  V  V  G  P  :  M  G  K  I  I  A  T  T  G  H  E  E  A  A  L  I  A  E  I  D  Y  A  A  I  Q  W  T  R :   E  S  L  P  L  E  S  Q  K  R  N  D  I  Y  Q  F  V  D  L  L  R  E  S  L  N  S  *  E  A  L  R  A  G  H  L  D  Q  L  A  Y  H  S  S  E  I  G  I  C  G  S  S  Y  Q  E  S  C  F  A  Y  F  V  G  N  H  G  C  I  F  F  L  W  S  F  Q  K  T  L  V  N  K  S  G  K  V  W  H  L  F  K  T  L </first_frame>
            <second_frame>  Q  Q  L  L  F  S  P  L  S  L  L  H  C  K  F  P  M  *  H  S :   S  R  L  E  F  V  S  *  *  L  P  Q  R  R  V  Q  T  S  S  M  L  V  V  *  F  K  L  L  Q  N  K  V  Q  L  L  Y  F  C  L :   K  C  G  I  A  L  I  Q  L  T  C  S  Q  S  L  L  R  S  S  A  I  *  T  V  P  H  H  C  L  C  Y  L  K  W  L  L  P  *  E  S  P  L  *  V  D  R  F  R  K  R  M  L  V  S  C  T  I  A  A  L  C  L  G  L  M  E  S  *  R  L  S  T  E  K :   Y  I  C  L  T  W  V  S  H  F  R  E  R  S  N  L  R  N  Q  L  T  F  Q  Q  E  R  S  L  Q  L  L  I  Q  :  I  L  D  A  L  E  *  E  F  V  M  I  Y  D  F  L  S  W  Q  C  H  T  V  P  E  :  V  L  I  *  Y  V  T  L  E  H  S  T  *  V  L  G  Q  P  C  G  N  W  S  K  E  Q   : G  Q  *  I  T  S :   F  M  W  H  L  A  P  C  L  E  I  Q  P  V  A  T  *  Y  G  V  T  P  L  W  L  D  R :   W  V  K  L  L  Q  P  L  G  M  R  K  Q  L  *  L  L  K  L  I  M  L  R  F  N  G  Q   : G  K  A  S  L  W  R  A  R  S  A  T  T  S  I  N  S  *  T  C  S  E  K  V  S  T  P  K  R  L  *  E  Q  D  I  L  I  S  *  H  I  I  V  L  K  *  V  F  V  G  V  L  T  K  K  V  V  L  L  I  L  L  A  I  M  V  V  S  S  F  Y  G  H  S  K  R  H  *  L  T  N  L  V  K  F  G  I  S  S  R  H   </second_frame>
            <third_frame>   N  S  C  C  S  V  L  C  L  C  S  T  A  N  S  Q  C  N  T   : V  Q  D  W  N  L  S  A  D  S  Y  H  R  E  E  C  K  H  L  Q  C  S  *  S  D  S  N  C  C  R  T  R  C  N  S  Y  T  F  A   : *  N  V  E  L  P  L  F  N  *  L  V  R  K  V  C  *  G  V  Q  R  Y  R  Q  C  P  I  I  A  Y  V  I  *  S  G  F  F  L  R  S  H  H  Y  R  W  I  D  S  G  K  G  C  W  S  A  V  Q  *  L  P  C  V  W  A  *  W  R  V  E  G  *  A  Q  K   : N  T  F  V  *  H  G  *  A  T  S  G  R  G  P  I  *  G  I  S  *  H  F  S  R  R  E  A  Y  S  C  *  Y  R :   F  W  T  H  W  N  R  N  L  S  *  Y  T  I  S  *  A  G  N  V  I  Q  C  P  R :   C  S  F  N  M  L  P  W  S  I  Q  H  E  Y  W  G  N  P  V  G  T  G  A  K  N  K  :  G  S  R  *  P   : A  L  C  G  I  L  L  P  V  S  R  F  S  Q  *  L  H  D  M  G  S  L  H  C  G  W  T   : D  G  *  N  Y  C  N  H  W  A  *  G  S  S  S  N  C  *  N  *  L  C  C  D  S  M  D  K  :  G  K  P  P  F  G  E  P  E  A  Q  R  H  L  S  I  R  R  L  A  Q  R  K  S  Q  L  L  R  G  F  K  S  R  T  S  *  S  A  S  I  S  *  F  *  N  R  Y  L  W  E  F  L  P  R  K  L  F  C  L  F  C  W  Q  S  W  L  Y  L  L  F  M  V  I  P  K  D  I  S  *  Q  I  W  *  S  L  A  S  L  Q  D  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91426" stop="91367"/>
                    <exon start="91294" stop="91178"/>
                    <exon start="90294" stop="90073"/>
                    <exon start="89775" stop="89676"/>
                    <exon start="89285" stop="89211"/>
                    <exon start="89132" stop="89054"/>
                    <exon start="88872" stop="88857"/>
                    <exon start="88763" stop="88683"/>
                    <exon start="88595" stop="88513"/>
                    <exon start="88432" stop="88351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATVAVQSFVSAPLQIPNVTQFKIGICQLIVTTEKSANIFNARSLIQTAAEQGATLILLPEMWNCPYSTDLFAKFAEEFSDIDSAPSLLMLSEVASSLGVTIIGGSIPEKDAGQLYNSCPVFGPNGELKAKHRKIHLFDMGKPLPGEVQFKESVNISAGEKPTVVDTDFGRIGIGICHDIRFPELAMSYSARGAHLICYPGAFNMSTGATLWELEQRTRAVDNQLYVASCSLSRDSASSYMIWGHSTVVGPMGKIIATTGHEEAALIAEIDYAAIQWTRESLPLESQKRNDIYQFVDLLRESLNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0097J14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88350" stop="88159"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EALRAGHLDQLAYHSSEIGICGSSYQESCFAYFVGNHGCIFFLWSFQKTLVNKSGKVWHLFKTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 41072 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2281 bytes was the average size of a spliced alignment
$ 20088 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1674 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 40 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:36:28
-->
