<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:32:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M419-R" ref_strand="+" ref_description="SGN-M419-R TG579-R [rflp_markers_reverse]">
      <seq>agatactcttgccagcatcgatgatatatggtgcgcatcttactgggtgtggtgaaacattaatcctttgaagtgcaacactgaatgttaagatatagagggatggatgtcgtcattttgtccaaaccatgtatatgtatgattatatagatgtaaattgacccattctgggtagtagtactgatgacttcaactgttctctttaatcttacatgaaaccccccttcataatcttcatagacattgctggacagttaattgaccaaggttttcttgggattcactagcaccacatgttcatctttaacatacatcaattttgagttaacgttgaatttatatattgattagtcgttttcctggtgccttctatattgtttagttgtatgatttgtgatcgtataggtagtctttaccttatcaatgcttaaaaatgaattcattctctcttgctatgtttttattcggagttgtgtattggcctgcaagtgaccacacacacaccccaaaaaaaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24483" stop="25602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24783" g_stop="25302" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-M419-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M419-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24783" e_stop="25302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTTTTCTTGGGATTCACTAGCACCACATGTTCATCTTTAACATACATCAATTTTGAGTTAACGTTGAATTTATATATTGATTAGTCGTTTTCCTGGTGCCTTCTATATTGTTTAGTTGTATGATTTGTGATCGTATAGGTAGTCTTTACCTTATCAATGCTTAAAAATGAATTCATTCTCTCTTGCTATGTTTTTATTCGGAGTTGTGTATTGGCCTGCAAGTGACCACACACACACCCCAAAAAAAAAGATG</genome_strand>
        <mrna_strand>AGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTTTTCTTGGGATTCACTAGCACCACATGTTCATCTTTAACATACATCAATTTTGAGTTAACGTTGAATTTATATATTGATTAGTCGTTTTCCTGGTGCCTTCTATATTGTTTAGTTGTATGATTTGTGATCGTATAGGTAGTCTTTACCTTATCAATGCTTAAAAATGAATTCATTCTCTCTTGCTATGTTTTTATTCGGAGTTGTGTATTGGCCTGCAAGTGACCACACACACACCCCAAAAAAAAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M419-F" ref_strand="+" ref_description="SGN-M419-F TG579-F [rflp_markers_forward]">
      <seq>cagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacatggtttgtcgtttcgcttttgtgaaagacaaataagagcataccttgatcggaatattagctatgggtcctgagggtcttttttctctgtcaagaggtgacctcgagaatcaatctatggaaaatttgtagtactggtgactaataagcttcctctttgcccaaataaatgcgatgggatcactcaataagtgaaccttttgagtgattcataacacaacacaaccacattcaatcactactcgacgtactataatagctgccttggttggaacattcagtgtcctaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26238" stop="25147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25938" g_stop="25447" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-M419-F" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M419-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25938" e_stop="25447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGACTAATAAGCTTCCTCTTTGCCCAAATAAATGCGATGGGATCACTCAATAAGTGAACCTTTTGAGTGATTCATAACACAACACAACCACATTCAATCACTACTCGACGTACTATAATAGCTGCCTTGGTTGGAACATTCAGTGTCCTAATGTA</genome_strand>
        <mrna_strand>CAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACATGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGACTAATAAGCTTCCTCTTTGCCCAAATAAATGCGATGGGATCACTCAATAAGTGAACCTTTTGAGTGATTCATAACACAACACAACCACATTCAATCACTACTCGACGTACTATAATAGCTGCCTTGGTTGGAACATTCAGTGTCCTAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8633-2" ref_strand="+" ref_description="SGN-M8633-2 C2_At5g09920-2 [cosii_markers]">
      <seq>gaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacctggtttgtcgtttcgcttttgtgaaagacaaataagagcataccttgatcggaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28637" stop="25383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28337" g_stop="28298" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="149" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="227" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="261" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="330" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25686" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="694" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="715"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-M8633-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8633-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28337" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGA</genome_strand>
        <mrna_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8633" ref_strand="+" ref_description="SGN-M8633 C2_At5g09920 [cosii_markers]">
      <seq>aaaggatgtcgggggaagaagaagaaaacgccgctgaactcaaaattggtgatgagtttttgaaggccaaatgtctaatgaattgtgaagtcgctttgattcttgagcacaagtatgagcagctccagcagatgtctgatgatccaactactcagatttcgcaggtatttgaaaagtcactgcaatatgtgaagcgtttcagccggtacaagaaccctgatgctgttagacaagctcgagagatccttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaaccgttgaagaagctattgccatggtcccatccatcaagaatagagtacgtgcacttgacgaggaagcaattgagaaaatgctaaacgacctttctctgataaagaagttcgagtagtgtcatcattgtgctcgtcttgctatgctgcagccgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28650" stop="25633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28351" g_stop="28298" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="163" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="241" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="275" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="344" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25932" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="462" r_length="118" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-M8633" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28351" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATGTCTGGGGAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTC</genome_strand>
        <mrna_strand>AAAGGATGTCGGGGGAAGAAGAAGAAAACGCCGCTGAACTCAAAATTGGTGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAATTGTGAAGTCGCTTTGATTCTTGAGCACAAGTATGAGCAGCTCCAGCAGATGTCTGATGATCCAACTACTCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCACTGCAATATGTGAAGCGTTTCAGCCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................GATCCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACCGTTGAAGAAGCTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGTACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAAACGACCTTTCTCTGATAAAGAAGTTCGAGTAGTGTCATCATTGTGCTCGTCTTGCTATGCTGCAGCCGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="24783" PGL_stop="25302"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24783" e_stop="25302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24783" e_stop="25302" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24783" stop="25302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M419-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTTTTCTTGGGATTCACTAGCACCACATGTTCATCTTTAACATACATCAATTTTGAGTTAACGTTGAATTTATATATTGATTAGTCGTTTTCCTGGTGCCTTCTATATTGTTTAGTTGTATGATTTGTGATCGTATAGGTAGTCTTTACCTTATCAATGCTTAAAAATGAATTCATTCTCTCTTGCTATGTTTTTATTCGGAGTTGTGTATTGGCCTGCAAGTGACCACACACACACCCCAAAAAAAAAGATG</gDNA_template>
            <first_frame> R  Y  S  C  Q  H  R  *  Y  M  V  R  I  L  L  G  V  V  K  H  *  S  F  E  V  Q  H  *  M  L  R  Y  R  G  M  D  V  V  I  L  S  K  P  C  I  C  M  I  I  *  M  *  I  D  P  F  W  V  V  V  L  M  T  S  T  V  L  F  N  L  T  *  N  P  P  S  *  S  S  *  T  L  L  D  S  *  L  T  K  V  F  L  G  F  T  S  T  T  C  S  S  L  T  Y  I  N  F  E  L  T  L  N  L  Y  I  D  *  S  F  S  W  C  L  L  Y  C  L  V  V  *  F  V  I  V  *  V  V  F  T  L  S  M  L  K  N  E  F  I  L  S  C  Y  V  F  I  R  S  C  V  L  A  C  K  *  P  H  T  H  P  K  K  K  D  </first_frame>
            <second_frame>  D  T  L  A  S  I  D  D  I  W  C  A  S  Y  W  V  W  *  N  I  N  P  L  K  C  N  T  E  C  *  D  I  E  G  W  M  S  S  F  C  P  N  H  V  Y  V  *  L  Y  R  C  K  L  T  H  S  G  *  *  Y  *  *  L  Q  L  F  S  L  I  L  H  E  T  P  L  H  N  L  H  R  H  C  W  T  V  N  *  P  R  F  S  W  D  S  L  A  P  H  V  H  L  *  H  T  S  I  L  S  *  R  *  I  Y  I  L  I  S  R  F  P  G  A  F  Y  I  V  *  L  Y  D  L  *  S  Y  R  *  S  L  P  Y  Q  C  L  K  M  N  S  F  S  L  A  M  F  L  F  G  V  V  Y  W  P  A  S  D  H  T  H  T  P  K  K  K  M </second_frame>
            <third_frame>   I  L  L  P  A  S  M  I  Y  G  A  H  L  T  G  C  G  E  T  L  I  L  *  S  A  T  L  N  V  K  I  *  R  D  G  C  R  H  F  V  Q  T  M  Y  M  Y  D  Y  I  D  V  N  *  P  I  L  G  S  S  T  D  D  F  N  C  S  L  *  S  Y  M  K  P  P  F  I  I  F  I  D  I  A  G  Q  L  I  D  Q  G  F  L  G  I  H  *  H  H  M  F  I  F  N  I  H  Q  F  *  V  N  V  E  F  I  Y  *  L  V  V  F  L  V  P  S  I  L  F  S  C  M  I  C  D  R  I  G  S  L  Y  L  I  N  A  *  K  *  I  H  S  L  L  L  C  F  Y  S  E  L  C  I  G  L  Q  V  T  T  H  T  P  Q  K  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0131F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28351" PGL_stop="25447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28351" e_stop="28298"/>
            <exon e_start="27361" e_stop="27253"/>
            <exon e_start="26948" e_stop="26871"/>
            <exon e_start="26759" e_stop="26726"/>
            <exon e_start="26625" e_stop="26557"/>
            <exon e_start="26049" e_stop="25447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.623" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28351" e_stop="28298" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27361" e_stop="27253" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.890">
            <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26948" e_stop="26871" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.623">
            <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26759" e_stop="26726" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.969">
            <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26625" e_stop="26557" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.984">
            <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="26049" e_stop="25447" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28351" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28337" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8633-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25938" stop="25447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M419-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGATGTCTGGGGAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG : AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA : GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA : AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG : CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG : AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGACTAATAAGCTTCCTCTTTGCCCAAATAAATGCGATGGGATCACTCAATAAGTGAACCTTTTGAGTGATTCATAACACAACACAACCACATTCAATCACTACTCGACGTACTATAATAGCTGCCTTGGTTGGAACATTCAGTGTCCTAATGTA</gDNA_template>
            <first_frame> Q  R  C  L  G  K  K  K  K  T  P  L  S  S  K  L  A  M  :  S  F  *  R  P  N  V  *  *  T  V  K  S  H  *  F  L  N  T  S  M  S  R  S  S  R  C  L  M  I  Q  Q  I  R  F  R   : R  Y  L  K  S  R  C  N  M  *  S  V  S  V  G  T  R  T  L  M  L  L  D  K  L  E   : K  F  L  V  G  I  H  L  L  N  S  S :   S  V  F  L  G  I  F  A  P  K  L  L  R  K  V  L  P  W  S  H  P  S  R :   I  E  D  V  H  L  T  R  K  Q  L  R  K  C  *  L  T  F  P  *  *  R  N  S  S  S  P  I  I  V  L  V  L  L  C  C  S  S  L  C  F  R  T  C  T  S  I  C  L  L  V  A  A  L  *  C  *  L  G  S  G  I  M  L  K  T  L  S  V  D  *  R  R  K  L  S  L  D  P  F  F  S  F  W  *  L  V  V  T  T  I  L  W  C  T  G  *  I  I  V  M  T  Y  L  V  C  R  F  A  F  V  K  D  K  *  E  H  T  L  I  G  I  L  A  M  G  P  E  G  L  F  S  L  S  R  G  D  L  E  N  Q  S  M  E  N  L  *  Y  W  *  L  I  S  F  L  F  A  Q  I  N  A  M  G  S  L  N  K  *  T  F  *  V  I  H  N  T  T  Q  P  H  S  I  T  T  R  R  T  I  I  A  A  L  V  G  T  F  S  V  L  M   </first_frame>
            <second_frame>  K  D  V  W  G  R  R  R  K  R  R  *  A  Q  N  W  R  * :   V  F  E  G  Q  M  S  N  E  L  *  S  R  I  D  S  *  T  Q  V  *  A  D  P  A  D  V  *  *  S  N  K  S  D  F  A  :  G  I  *  K  V  A  A  I  C  E  A  F  Q  S  V  Q  E  P  *  C  C  *  T  S  S  R  :  N  S  *  *  V  S  T  C  *  I  R   : A  L  C  S  W  E  S  L  P  R  N  C  *  G  R  Y  C  H  G  P  I  H  Q   : E  *  R  T  C  T  *  R  G  S  N  *  E  N  A  N  *  P  F  P  N  K  E  I  R  V  V  L  L  *  C  L  S  C  Y  A  A  A  V  S  A  S  E  P  V  P  P  Y  V  Y  *  *  Q  L  C  N  A  N  W  A  L  A  L  C  *  K  L  Y  L  L  I  E  E  E  N  S  L  W  T  L  F  F  L  F  G  S  W  L  *  P  Q  S  F  G  A  R  A  K  S  L  *  *  H  T  W  F  V  V  S  L  L  *  K  T  N  K  S  I  P  *  S  E  Y  *  L  W  V  L  R  V  F  F  L  C  Q  E  V  T  S  R  I  N  L  W  K  I  C  S  T  G  D  *  *  A  S  S  L  P  K  *  M  R  W  D  H  S  I  S  E  P  F  E  *  F  I  T  Q  H  N  H  I  Q  S  L  L  D  V  L  *  *  L  P  W  L  E  H  S  V  S  *  C  </second_frame>
            <third_frame>   K  M  S  G  E  E  E  E  N  A  A  E  L  K  I  G  D   : E  F  L  K  A  K  C  L  M  N  C  E  V  A  L  I  L  E  H  K  Y  E  Q  I  Q  Q  M  S  D  D  P  T  N  Q  I  S  Q :   V  F  E  K  S  L  Q  Y  V  K  R  F  S  R  Y  K  N  P  D  A  V  R  Q  A  R  E :   I  L  S  R  Y  P  L  A  E  F  E  :  L  C  V  L  G  N  L  C  P  E  T  V  E  E  G  I  A  M  V  P  S  I  K  :  N  R  G  R  A  L  D  E  E  A  I  E  K  M  L  T  D  L  S  L  I  K  K  F  E  *  S  Y  Y  S  A  C  L  A  M  L  Q  Q  S  L  L  P  N  L  Y  L  H  M  F  I  S  S  S  S  V  M  L  I  G  L  W  H  Y  V  E  N  F  I  C  *  L  K  K  K  T  L  S  G  P  F  F  F  F  L  V  A  G  C  N  H  N  P  L  V  H  G  L  N  H  C  N  D  I  P  G  L  S  F  R  F  C  E  R  Q  I  R  A  Y  L  D  R  N  I  S  Y  G  S  *  G  S  F  F  S  V  K  R  *  P  R  E  S  I  Y  G  K  F  V  V  L  V  T  N  K  L  P  L  C  P  N  K  C  D  G  I  T  Q  *  V  N  L  L  S  D  S  *  H  N  T  T  T  F  N  H  Y  S  T  Y  Y  N  S  C  L  G  W  N  I  Q  C  P  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28349" stop="28298"/>
                    <exon start="27361" stop="27253"/>
                    <exon start="26948" stop="26871"/>
                    <exon start="26759" stop="26726"/>
                    <exon start="26625" stop="26557"/>
                    <exon start="26049" stop="25972"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQIQQMSDDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQAREILSRYPLAEFELCVLGNLCPETVEEGIAMVPSIKNRGRALDEEAIEKMLTDLSLIKKFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 8384 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2096 bytes was the average size of a spliced alignment
$ 6864 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3432 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:32:12
-->
