<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:25:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378912" ref_strand="+" ref_description="SGN-E378912 [TUS-1-K15]">
      <seq>atttatgttctcttcctttatttaatggttctttttttaagaaaaaacaaaataagaactttttggagaaaagaatgttggggggttgaaccttaatagctttcttgtaaagaaagcagctgcccaatttgtttttacgtcgtttatgatggagctaaaattttcattaaagagtttaaaatataaaaaattaaatatataaaaaagtcgaaagtattcaatatttagtcatttataatatagataaaaaaatttttttaactatatatgagtaatatattttttgcacagaagagaattcgatgaaccctaagccagagacgaacccagattttgaaaactttgggtgcactatataagctctaaagtaaattaaaaaataaaataagtgacgccacttgtttataccaactgcacaagaacatataggtgcactatttattatattcttttttatatatatttaaatcattttttcaaaattagcgattacatgtacatcgttactaagccatgtgggtccgcttgcctaaggccctcactagctccgatccttccttgtgcatgaatatcttaaattgtagaattattgttctgtttcacatttagtgtcatacctttttaattcataaattaaatgcacatgcaatttttcttttgaagacgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2942" stop="4211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3242" g_stop="3911" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E378912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3242" e_stop="3911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAAGTGACGCCACTTGTTTATACCAACTGCACAAGAACATATAGGTGCACTATTTATTATATTCTTTTTTATATATATTTAAATCATTTTTTCAAAATTAGCGATTACATGTACATCGTTACTAAGCCATGTGGGTCCGCTTGCCTAAGGCCCTCACTAGCTCCGATCCTTCCTTGTGCATGAATATCTTAAATTGTAGAATTATTGTTCTGTTTCACATTTAGTGTCATACCTTTTTAATTCATAAATTAAATGCACATGCAATTTTTCTTTTGAAGACGATCT</genome_strand>
        <mrna_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAAGTGACGCCACTTGTTTATACCAACTGCACAAGAACATATAGGTGCACTATTTATTATATTCTTTTTTATATATATTTAAATCATTTTTTCAAAATTAGCGATTACATGTACATCGTTACTAAGCCATGTGGGTCCGCTTGCCTAAGGCCCTCACTAGCTCCGATCCTTCCTTGTGCATGAATATCTTAAATTGTAGAATTATTGTTCTGTTTCACATTTAGTGTCATACCTTTTTAATTCATAAATTAAATGCACATGCAATTTTTCTTTTGAAGACGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200890" ref_strand="+" ref_description="SGN-E200890 [cLEC-5-G6]">
      <seq>atttatgttctcttcctttatttaatggttctttttttaagaaaaaacaaaataagaactttttggagaaaagaatgttggggggttgaaccttaatagctttcttgtaaagaaagcagctgcccaatttgtttttacgtcgtttatgatggagctaaaattttcattaaagagtttaaaatataaaaaattaaatatataaaaaagtcgaaagtattcaatatttagtcatttataatatagataaaaaaatttttttaactatatatgagtaatatattttttgcacagaagagaattcgatgaaccctaagccagaaaccaacccagattttgaaaactttgggtgccctttataagctctaaagtaaattaaaaaataaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2942" stop="3929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3242" g_stop="3629" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E200890" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3242" e_stop="3629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAA</genome_strand>
        <mrna_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAAACCAACCCAGATTTTGAAAACTTTGGGTGCCCTTTATAAGCTCTAAAGTAAATTAAAAAATAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379543" ref_strand="+" ref_description="SGN-E379543 [TUS-1-K15](-)">
      <seq>gaagtttgttgagagttgaaaatgtgtttagattgtgtagcctataattttttttaaaaaaatgtggaagttttggaaacaaatctttgaaaattggaaaccattattccacataggtgtgtaaagggtattgtgtaatgttttgatcagttagattcacatgttgtttacatgtaaaatattaaagttaaattttggtaaatttcttctggcatccgtgtaattactttaactaatgagatactgtttttgtcgtaattaaaaggcgaattcaaaattcaaaaataagaaaaatttctagcttgttgggtcccgtggggagtatcatggtgaatgacaagtgacataagtgttgaacaagaagaaaactgatgattggaacatgtcaaatgaataggttcaacgtaattgactgacgtattttgcagcaagtgttgatgaggaagtaagctgacaattgaaatatgtcaaaagaaccagttcaacaacgatggtaaaattagagtcgcactaggattaattttaattatatttattagaattatatttggactagaattagattaaaattagaattatagtatcacgaggatttgattatttataattgcactattattattattataatagtaatatatattgtagtagaactctaagtattgttaaaataggagatcaactatttattatatcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3703" stop="4978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4003" g_stop="4703" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E379543" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4003" e_stop="4703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGTTGAGAGTTGAAAATGTGTTTAGATTGTGTAGCCTATAATTTTTTTTAAAAAAATGTGGAAGTTTTGGAAACAAATCTTTGAAAATTGGAAACCATTATTCCACATAGGTGTGTAAAGGGTATTGTGTAATGTTTTGATCAGTTAGATTCACATGTTGTTTACATGTAAAATATTAAAGTTAAATTTTGGTAAATTTCTTCTGGCATCCGTGTAATTACTTTAACTAATGAGATACTGTTTTTGTCGTAATTAAAAGGCGAATTCAAAATTCAAAAATAAGAAAAATTTCTAGCTTGTTGGGTCCCGTGGGGAGTATCATGGTGAATGACAAGTGACATAAGTGTTGAACAAGAAGAAAACTGATGATTGGAACATGTCAAATGAATAGGTTCAACGTAATTGACTGACGTATTTTGCAGCAAGTGTTGATGAGGAAGTAAGCTGACAATTGAAATATGTCAAAAGAACCAGTTCAACAACGATGGTAAAATTAGAGTCGCACTAGGATTAATTTTAATTATATTTATTAGAATTATATTTGGACTAGAATTAGATTAAAATTAGAATTATAGTATCACGAGGATTTGATTATTTATAATTGCACTATTATTATTATTATAATAGTAATATATATTGTAGTAGAACTCTAAGTATTGTTAAAATAGGA-CTCAACTATTTATTATTATCATCAA</genome_strand>
        <mrna_strand>GAAGTTTGTTGAGAGTTGAAAATGTGTTTAGATTGTGTAGCCTATAATTTTTTTTAAAAAAATGTGGAAGTTTTGGAAACAAATCTTTGAAAATTGGAAACCATTATTCCACATAGGTGTGTAAAGGGTATTGTGTAATGTTTTGATCAGTTAGATTCACATGTTGTTTACATGTAAAATATTAAAGTTAAATTTTGGTAAATTTCTTCTGGCATCCGTGTAATTACTTTAACTAATGAGATACTGTTTTTGTCGTAATTAAAAGGCGAATTCAAAATTCAAAAATAAGAAAAATTTCTAGCTTGTTGGGTCCCGTGGGGAGTATCATGGTGAATGACAAGTGACATAAGTGTTGAACAAGAAGAAAACTGATGATTGGAACATGTCAAATGAATAGGTTCAACGTAATTGACTGACGTATTTTGCAGCAAGTGTTGATGAGGAAGTAAGCTGACAATTGAAATATGTCAAAAGAACCAGTTCAACAACGATGGTAAAATTAGAGTCGCACTAGGATTAATTTTAATTATATTTATTAGAATTATATTTGGACTAGAATTAGATTAAAATTAGAATTATAGTATCACGAGGATTTGATTATTTATAATTGCACTATTATTATTATTATAATAGTAATATATATTGTAGTAGAACTCTAAGTATTGTTAAAATAGGAGATCAACTATTTATTA-TATCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745831" ref_strand="+" ref_description="SGN-E745831 [GI|47105039]">
      <seq>gagggaaaatattacttggaagatccttgtcgtttcgaattgcgatttctctactggtaggcgtccaaaatccaactaattacgaccattcttgttcatcgctctcgttttttttcggttcaacagatcgctatcaaacgtaatcgcacatatacatatttctgattgaaaattttgttcaatttgattcgaaaatcgacggattttacctacagattcatccgatttcgcctgattttgaattgaggattcaagggaagatcagattattcgactgtgtattaggcagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggctgatttggctcggatgcagcagcagatgatgtctaatcctgatttaatgagaatggctactgaaggcatgaaaaacatgaggccggatgacttaaaggttgctgcagaacagttgaagcatactcgtcctgaggatatggctgagattggtaaaaaaatggttaatgcttcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcagggaaatgatcttcacagccagggaaagtttaaggaggccctgcagaaatattcgcttgcaaagaaaaatctgtcaagcattcctgccgcgaaaggcaggagtatctcattggcttgttccttgaacatgatgtcatgttacttaaaaactggacaatacgatgactgcataaaggaaggtagtgaggttttgacatatgacgacaagaatatcaaagctctttatcgtaggggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcgcctgatgatgacactattgctgatgtcttaaggggtgtccaagaaagattggtgaaagaaggtggttcttcaagacgtagaggaggattggttattgaagaaataattgaagaagaaccattagtgtcttcagaagccgtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctcccttatcaagttcagagtctttggaggctttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatgagaaaccgaatgaaagatccagccatgagacagatgttctcttcaatgattaaaaatatgagtccagagatgatgtctaacatgagtgaacaatttggggtgaagctcagtcaggcagatgcagagaaagctcaacaggcaatgtcatctttgtcaccagatgacttggaaaagatgatgaagtgggctgatagaattcaaagaggagttgaaggtgcgaagaagacaaaaaattggctcttaggaaaacctggcatgatcttggctatacttgtgctacttttagcagtcatccttcacaagctgggcttcatcgggagctaaacttgacgttctagccaaatattagcatgaagagttgagtagagtttggaatccttgtactaatgtacttgaaatggggatatcggtgggtaaaccttggttggagacgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6663" stop="15657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6962" g_stop="7347" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7348" i_stop="7883" i_length="536">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7884" g_stop="8114" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="617" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8115" i_stop="8670" i_length="556">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8671" g_stop="8727" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="674" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8728" i_stop="8815" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8816" g_stop="8944" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="803" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8945" i_stop="9453" i_length="509">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9454" g_stop="9531" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="881" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9532" i_stop="9647" i_length="116">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9648" g_stop="9718" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="952" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9719" i_stop="9832" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9833" g_stop="9876" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="953" r_stop="996" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9877" i_stop="9967" i_length="91">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9968" g_stop="10175" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="997" r_stop="1204" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="10176" i_stop="11471" i_length="1296">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11472" g_stop="12033" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1205" r_stop="1766" r_length="562" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="12034" i_stop="14218" i_length="2185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="14219" g_stop="14362" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1767" r_stop="1910" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="14363" i_stop="15098" i_length="736">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15099" g_stop="15351" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1911" r_stop="2163" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2167" polyA_stop="2181"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E745831" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2163</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6962" e_stop="7347"/>
          <exon e_start="7884" e_stop="8114"/>
          <exon e_start="8671" e_stop="8727"/>
          <exon e_start="8816" e_stop="8944"/>
          <exon e_start="9454" e_stop="9531"/>
          <exon e_start="9648" e_stop="9718"/>
          <exon e_start="9833" e_stop="9876"/>
          <exon e_start="9968" e_stop="10175"/>
          <exon e_start="11472" e_stop="12033"/>
          <exon e_start="14219" e_stop="14362"/>
          <exon e_start="15099" e_stop="15351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGAAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAGGTAATTTATTTTGTGATACACCGATAGATTCTCGGTAATTCCATTTTTGCACTCATTTGGCTTCAATTGGTGTATATAATAACTTAATGAGTTCATTCTTATGATCCTTAAGAAGAGAGTTACTTTTTAACTAACCATGTGAGCTGGTTTTTACATCTTTTTAATTCACTGTTGTACCAAACCAGCTTGAACTTTAAGAATACGTACATGTGCATACAACTTCCTGTCATGTACGGTTATGCAACTTGTTAATTACCTTGCGAAGTGTCTCTATTATCTCTACATGAGATGAATAACTTGTGACTTGTAAGCTGAAGGTCTGACTTGATTTATAACAGTTATTGTACATCATTACTAAACAGTTGCTCTTTTCAACATGCTTGCCTTTGGTTGCTATGATTTTGGTCTTGTATGCGATGTTTCTGTGATACTGCAACAAAATTATCTGTTATGCATTTCAATTTCAATGCTAAACAATGAGCTTATGGTACTTGATGGATGCTTTGCCTTATTTGGGAATAAGCTCATTTGAGGATCTCTATGTACAAAATGACAGGGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTTGTAAGCCTAACCTTTTCCTTTTTGGTTTGCTTGTGTCTACAGAAACTTAAGTTACTGTTCTGATTATTACTTTACTTTTCTTTTTCAGGCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAGGTATGGGGATAGTGCTTTAAGTTTGCCTAAGTTTGAGGCTTAATGATTCTAACTTATATTTTTTTTTTCCATAACATGGTGGGAAACATGTGCATTTGTATCCAATTGTGCTCTCTTGTTATATATTTGTGTTTCGATTTGCAGGTTTCTGTTGTAGTTGTCCAAGGGCAGGGGGTGTTTACTCTAACCCAAGATGAATGTCCACTTTATTTCTGGTCTATTTCAAATTATGTTTACCTTTTTAAAAGAAAGATGTGTTCACATATGTACATGATTTAAGAGTTGACTTTTACACTTCTTGTTACAGCTTCTTAAAAAAACTTATTCTCAAGCCTGAAAGTTTTTAACTCATTGAAGTTAAATATTCAATTTGGTACATGTTAAAACCTATGCCAAATGAAAACTTGACATTCAAGTCTTACGTTAGTTCAGTTTTGAGATTGAGCTGTGCTTGAATATGAATCATAACTGCAGTAATATGGTTGTTACATAATGTATGCCTGGTGCAGGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGACGTATGTTATGCATATCCATATTTTAGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGTCAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAGGTTTGACTTCAATCCTTTCTTGTGGAAATAGTATTTGTCCTCTGTTCTTTATTTTTATATTTGATGCATATTAGGGGCTTTATTATTTTCTGGGTAGTGATATGTATTTTAGTATTGCCTATACCATCAATAAAGATCCAATCATATTTCCCTAATGTTCACACTGCTAACTCAAAAAATCCTGATTTGAATTTGTCAAATACCCTAGTTCCTCCACTAACCAAATCATTATTTCTTACTTTTCTCTGTTTTAAGATAGATACTGTTCCACTTTGAATTTTTGGTAGTCCATATTTGAAAGAGAAACAACCCCTACCTTGTGAGGTAAAGAGGATGTTTCTAATAGACGCTCAGCTGAAGGAGCAACATATCAAAGTAGTCCGAAAAAAGAAATATGGAATTGAATTGGCCATGACAAATAATATAGGAAGCATGAAAAATGAGTTGTTACTACAACTGAATGCTTAGATAATTGAAGCACAGAAAACAATAGATTGTAACAGAAATCGAAGAACAATTCCTACAATCGTAGTACTACTAATACGGGTGTTGGATGAGAAGCTAGACAATGCACCTCAACGCTAATTTTTGTCCTTCATTACCTCCTATTTAAGGTCATGTCCTCGGTCAATTGACGTTGCGTCATGTCCTGTCTAATCACTTCTCCTCGATACTTCTTCGGCCTACGTTTACCGCTCTTAAAACCTACCAAAGCTATCTTCTCACACCTCAACACCAGGGTGTCTGTGCATCTTTTTTTCACATGCCTCAACATTGCTTCCCTTCAATATATTTGTTTACTTTGGCTGAACACCAAATCCCAAACTGAATGCTATCATCATATTTAATGGAACTACCTGGCGAACAGATTGACCGACTCTCTCAGGGTGTTTCCTCCATTAGCTCTTGTTGCTCCAATAATGTAATTACACTTGCAAGGAATATTGAAATTTGAACCGGAAGCAAGCACCATACCCACAGATGCCCCCTCTCAAATAATAAATACAAGCAGCCTTGTCGGGTCGTATATGATACGATCTGGGCCACTGCCTACCGACAATTGCCACATAGAAATCTTAATTGAACGTCCATATCTTTCAGTTTTCCTCCATCTCCGGGTAGAAATGAACGCGGGACGTTTGATGTCTTACTCGTTTAGATACGATGAGATAATCATCAACTAGGTTGCTCGGACTCTTCACTTTTGGTGCTGCACCCGTGTCCATACGACATGGGTGTGGGTGTGAGATGTGTGTCTGATTTGGTCAACCGATTGTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTAGAAATTTCTATGTCACTGTTTTTCCTTTAATCTCCTTCAAGGATTCTCCTCATGTTCTCCACATAATATCTCATAATGTAGGTTTTATAACTCTATTTTTAGGCGAATCCCCGCCTATTTTCATATATGGGTCCATATCCCTGAATCTTAAAAATTAAATCACGAATGATCCAACCTGTAGATCCATACCCATATTGGACAGCCGAGTCTGAGCAACTTAGATCATCAAAGTTGGGGAATCTCAACTGGAATACCTCACTGTGCCAGTACCGGTTGTGAGCCACATTCGGCGAAGAGTTTCTGTTCTTTGTCCCCTAAATGCATTTTAAATTGCGAGTAAAATAAAAATAATTAGTGGAATCTATAGGTGTAGCTAAAGACAATTTCGGAAATTAGAAACGTATTCGTTTTTTGTTTGGGGTGAGCTCACTACATTGTCTCATTGAGTAGTGTTTCCTCATAAAGGAAAGAGAGACGGATGAGTATAGGAATGTGTAAAAAAGCACATGCATTGATGACACCATGAGTCGGGTGATGAAAGATCTTCACGGTATGTTCTGTAAGCATATTAGCTAATTACCCTGTTTTGGATCCTTTTCAGTCAGCAATCCTCGCTTATTTTATTTCTTGTATGTTTTTTTTCTAAAATAATTGCCATGTGTTGTGAACTTCCGGTAAAAATGTTTACTTTTCTAATAATATTACCAAATGTGGGGGTTAAACTTCTCTGTCCTTTGTATTTATTCGTTTACAAGCTTTTACAGAGGTTTCTGCCTTCAATTACTACTGTGTTATATGTGCCTGTACCTGCTTTATGCTGATGTATCTGGGTTCTCATTGATTTACTCCTTGACACGTTTCATCAAATTGACAGATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATGGTAATTAATCAAAATATCCTATCCCCCTTTTCTCTGTTTCTCTTAAAGAAGATGTGTACTTTCCTCATTAAGTTGTTTTGTATCATTGTGATTCACGTGATCGGCACTGCGTCTTCACTTAGAACCGATAGATTTTTTTCCCAATCAATGAAAAACCCGCAACGACTCGTGTCTGGTCCAGAAAAAAACTAAATGTTCATTGAGCCTTGAGAAGTCATAGGAGAAAGATTAAGATATTATCACTTTAAAGGGGAGCACATATGATTGAAGTGTTGCTTGTCTTTTCAACTTTATAGTGGGTGTACATTTTTATCTTCTCCAGATGGGAGTGTGTCGAGCATCATGCTTTGGATATGAGGTTTTGTTGTAATTTGGCGTTTGCAAATTGGATTCTTTAATGAAATAAACACTGGTTATAGTTAAGTTCCAATGTTTTGCTATTAGCCATGGTGATGTTTAATTCTAACACGTCTTCTAGCGTCTTGTTACAATATAAATAGAATATGTAAACCACGAGAACCACGTGAGTAGTAGGGCTTGAGCTCTTGAGGAATTTCTGTCACCTAATTATTTTCTGGGTTTTGTAGTTATTTAGTTTCCAGGTAGTTCGCATCATCTCTTTGTTTTAAGTTAGTGACAAGCCTCATATTTTAACCATCTTTTCTAACCTTTGTCTTGTGTGTTATACACTTCACTGTTGCACAAGGTAAATCTATATTTTTTCCGAATATTGCAGATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAG</genome_strand>
        <mrna_strand>GAGGGAAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGTTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTT........................................................................................GCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC...........................................................................................GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCGGTGGGTAAACCTTGGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365661" ref_strand="+" ref_description="SGN-E365661 [cLPT-8-A1]">
      <seq>cgaggattacttggaagatccttgtcgtttcgaattgcgatttctctactggtaggcgtccaaaatccaactaattacgaccattcttgttcatcgctctcgctttttttcggttcaacagatcgctatcaaacgtaatcgcatctatacatatttctgattgaaaattgtgttcaatttgattcgaaaatcgacggattttacctacagattcatccaatttcgcctgattttgaattgaggattcaagggaagatcagattattcgactgtgtatttggcagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggatgatttggctcggatgcagcaacagatgatgtctaatcctgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6672" stop="8203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6967" g_stop="7347" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7348" i_stop="7883" i_length="536">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7884" g_stop="7903" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="401" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E365661" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6967" e_stop="7347"/>
          <exon e_start="7884" e_stop="7903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTT</genome_strand>
        <mrna_strand>CGAGGATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGCTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCATCTATACATATTTCTGATTGAAAATTGTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCAATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTTGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGATGATTTGGCTCGGATGCAGCAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364831" ref_strand="+" ref_description="SGN-E364831 [cLPT-4-K2]">
      <seq>aagatccttgtcgtttcgaattgcgatttctctactggtaggcgtccaaaatccaactaattacgaccattcttgttcatcgctctcgctttttttcggttcaacagatcgctatcaaacgtaatcgcatctatacatatttctgattgaaaattgtgttcaatttgattcgaaaatcgacggattttacctacagattcatccaatttcgcctgattttgaattgaggattcaagggaagatcagattattcgactgtgtatttggcagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggatgatttggctcggatgcagcaacagatgatgtctaatcctgatttaatgagaatggctactgaaggcatgaaaaacatgaggccggatgacttaaaggttgctgcagaacagttgaagcatacccgtcctgaggatatggctgagattggtaagaaaatggctaatgcttcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcaaggaaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6681" stop="8419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6981" g_stop="7347" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7348" i_stop="7883" i_length="536">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7884" g_stop="8114" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="598" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E364831" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6981" e_stop="7347"/>
          <exon e_start="7884" e_stop="8114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG</genome_strand>
        <mrna_strand>AAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGCTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCATCTATACATATTTCTGATTGAAAATTGTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCAATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTTGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGATGATTTGGCTCGGATGCAGCAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACCCGTCCTGAGGATATGGCTGAGATTGGTAAGAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365323" ref_strand="+" ref_description="SGN-E365323 [cLPT-2-O18]">
      <seq>ttgctgcagaacagttgaagcatacccgtcctgaggatatggctgagattggtaagaaaatggctaatgcttcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcagggaaatgatcttcacagccagggaaagtttaaggaggccctgcagaaatattcgcttgcaaagaaaaatctgtcaagcattcctgccgcgaaaggcaggagtatctcattggcttgttccttgaacatgatgtcatgttacttaaaaactggacaatacgatgactgcatcaaggaaggtagtgaggttttgacatatgacgacaagaatatcaaagctctttatcgtaggggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcacctgatgatgacactattgctgatgtcttaaggggtgtccaagaaagattggtgaaggaaggtggtgcttcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7657" stop="10175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7957" g_stop="8114" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8115" i_stop="8670" i_length="556">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8671" g_stop="8727" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="215" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8728" i_stop="8815" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8816" g_stop="8944" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="344" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8945" i_stop="9453" i_length="509">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9454" g_stop="9531" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="422" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9532" i_stop="9647" i_length="116">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9648" g_stop="9718" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="493" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9719" i_stop="9832" i_length="114">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9833" g_stop="9875" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="536" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E365323" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7957" e_stop="8114"/>
          <exon e_start="8671" e_stop="8727"/>
          <exon e_start="8816" e_stop="8944"/>
          <exon e_start="9454" e_stop="9531"/>
          <exon e_start="9648" e_stop="9718"/>
          <exon e_start="9833" e_stop="9875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAGGTAATTTATTTTGTGATACACCGATAGATTCTCGGTAATTCCATTTTTGCACTCATTTGGCTTCAATTGGTGTATATAATAACTTAATGAGTTCATTCTTATGATCCTTAAGAAGAGAGTTACTTTTTAACTAACCATGTGAGCTGGTTTTTACATCTTTTTAATTCACTGTTGTACCAAACCAGCTTGAACTTTAAGAATACGTACATGTGCATACAACTTCCTGTCATGTACGGTTATGCAACTTGTTAATTACCTTGCGAAGTGTCTCTATTATCTCTACATGAGATGAATAACTTGTGACTTGTAAGCTGAAGGTCTGACTTGATTTATAACAGTTATTGTACATCATTACTAAACAGTTGCTCTTTTCAACATGCTTGCCTTTGGTTGCTATGATTTTGGTCTTGTATGCGATGTTTCTGTGATACTGCAACAAAATTATCTGTTATGCATTTCAATTTCAATGCTAAACAATGAGCTTATGGTACTTGATGGATGCTTTGCCTTATTTGGGAATAAGCTCATTTGAGGATCTCTATGTACAAAATGACAGGGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTTGTAAGCCTAACCTTTTCCTTTTTGGTTTGCTTGTGTCTACAGAAACTTAAGTTACTGTTCTGATTATTACTTTACTTTTCTTTTTCAGGCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAGGTATGGGGATAGTGCTTTAAGTTTGCCTAAGTTTGAGGCTTAATGATTCTAACTTATATTTTTTTTTTCCATAACATGGTGGGAAACATGTGCATTTGTATCCAATTGTGCTCTCTTGTTATATATTTGTGTTTCGATTTGCAGGTTTCTGTTGTAGTTGTCCAAGGGCAGGGGGTGTTTACTCTAACCCAAGATGAATGTCCACTTTATTTCTGGTCTATTTCAAATTATGTTTACCTTTTTAAAAGAAAGATGTGTTCACATATGTACATGATTTAAGAGTTGACTTTTACACTTCTTGTTACAGCTTCTTAAAAAAACTTATTCTCAAGCCTGAAAGTTTTTAACTCATTGAAGTTAAATATTCAATTTGGTACATGTTAAAACCTATGCCAAATGAAAACTTGACATTCAAGTCTTACGTTAGTTCAGTTTTGAGATTGAGCTGTGCTTGAATATGAATCATAACTGCAGTAATATGGTTGTTACATAATGTATGCCTGGTGCAGGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGA</genome_strand>
        <mrna_strand>TTGCTGCAGAACAGTTGAAGCATACCCGTCCTGAGGATATGGCTGAGATTGGTAAGAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTT........................................................................................GCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATCAAGGAAGGTAGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCACCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTCCAAGAAAGATTGGTGAAGGAAGGTGGTGCTTCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275741" ref_strand="+" ref_description="SGN-E275741 [cLEN-18-A11]">
      <seq>ggttttgacatatgacgaccagaatatgaaagctctttatcgtacgggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcgcctgatgatgacactattgctgatgtcttaaggggtgtgcaagaaagattggtgaaagaaggtggttcttcaagacgtagaggaggattggttattgaagaaataattgaggaagaaccattattgtcttcagaagccgtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9153" stop="10424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9453" g_stop="9531" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9532" i_stop="9647" i_length="116">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9648" g_stop="9718" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="150" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9719" i_stop="9832" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9833" g_stop="9876" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="194" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9877" i_stop="9967" i_length="91">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9968" g_stop="10124" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="351" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E275741" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9453" e_stop="9531"/>
          <exon e_start="9648" e_stop="9718"/>
          <exon e_start="9833" e_stop="9876"/>
          <exon e_start="9968" e_stop="10124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGACGTATGTTATGCATATCCATATTTTAGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGTCAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTT</genome_strand>
        <mrna_strand>GGTTTTGACATATGACGACCAGAATATGAAAGCTCTTTATCGTACGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTGCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC...........................................................................................GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAGGAAGAACCATTATTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212797" ref_strand="+" ref_description="SGN-E212797 [cLEC-73-E15]">
      <seq>tcagaagccgtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctcccttatcaagttcagagtctttggaggctttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatgagaaaccgaatgaaagatccagccatgagacagatgttctcttcaatgattaaaaatatgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9721" stop="14549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10021" g_stop="10175" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10176" i_stop="11471" i_length="1296">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11472" g_stop="12033" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="717" r_length="562" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12034" i_stop="14218" i_length="2185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14219" g_stop="14249" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="748" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E212797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10021" e_stop="10175"/>
          <exon e_start="11472" e_stop="12033"/>
          <exon e_start="14219" e_stop="14249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAGGTTTGACTTCAATCCTTTCTTGTGGAAATAGTATTTGTCCTCTGTTCTTTATTTTTATATTTGATGCATATTAGGGGCTTTATTATTTTCTGGGTAGTGATATGTATTTTAGTATTGCCTATACCATCAATAAAGATCCAATCATATTTCCCTAATGTTCACACTGCTAACTCAAAAAATCCTGATTTGAATTTGTCAAATACCCTAGTTCCTCCACTAACCAAATCATTATTTCTTACTTTTCTCTGTTTTAAGATAGATACTGTTCCACTTTGAATTTTTGGTAGTCCATATTTGAAAGAGAAACAACCCCTACCTTGTGAGGTAAAGAGGATGTTTCTAATAGACGCTCAGCTGAAGGAGCAACATATCAAAGTAGTCCGAAAAAAGAAATATGGAATTGAATTGGCCATGACAAATAATATAGGAAGCATGAAAAATGAGTTGTTACTACAACTGAATGCTTAGATAATTGAAGCACAGAAAACAATAGATTGTAACAGAAATCGAAGAACAATTCCTACAATCGTAGTACTACTAATACGGGTGTTGGATGAGAAGCTAGACAATGCACCTCAACGCTAATTTTTGTCCTTCATTACCTCCTATTTAAGGTCATGTCCTCGGTCAATTGACGTTGCGTCATGTCCTGTCTAATCACTTCTCCTCGATACTTCTTCGGCCTACGTTTACCGCTCTTAAAACCTACCAAAGCTATCTTCTCACACCTCAACACCAGGGTGTCTGTGCATCTTTTTTTCACATGCCTCAACATTGCTTCCCTTCAATATATTTGTTTACTTTGGCTGAACACCAAATCCCAAACTGAATGCTATCATCATATTTAATGGAACTACCTGGCGAACAGATTGACCGACTCTCTCAGGGTGTTTCCTCCATTAGCTCTTGTTGCTCCAATAATGTAATTACACTTGCAAGGAATATTGAAATTTGAACCGGAAGCAAGCACCATACCCACAGATGCCCCCTCTCAAATAATAAATACAAGCAGCCTTGTCGGGTCGTATATGATACGATCTGGGCCACTGCCTACCGACAATTGCCACATAGAAATCTTAATTGAACGTCCATATCTTTCAGTTTTCCTCCATCTCCGGGTAGAAATGAACGCGGGACGTTTGATGTCTTACTCGTTTAGATACGATGAGATAATCATCAACTAGGTTGCTCGGACTCTTCACTTTTGGTGCTGCACCCGTGTCCATACGACATGGGTGTGGGTGTGAGATGTGTGTCTGATTTGGTCAACCGATTGTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTAGAAATTTCTATGTCACTGTTTTTCCTTTAATCTCCTTCAAGGATTCTCCTCATGTTCTCCACATAATATCTCATAATGTAGGTTTTATAACTCTATTTTTAGGCGAATCCCCGCCTATTTTCATATATGGGTCCATATCCCTGAATCTTAAAAATTAAATCACGAATGATCCAACCTGTAGATCCATACCCATATTGGACAGCCGAGTCTGAGCAACTTAGATCATCAAAGTTGGGGAATCTCAACTGGAATACCTCACTGTGCCAGTACCGGTTGTGAGCCACATTCGGCGAAGAGTTTCTGTTCTTTGTCCCCTAAATGCATTTTAAATTGCGAGTAAAATAAAAATAATTAGTGGAATCTATAGGTGTAGCTAAAGACAATTTCGGAAATTAGAAACGTATTCGTTTTTTGTTTGGGGTGAGCTCACTACATTGTCTCATTGAGTAGTGTTTCCTCATAAAGGAAAGAGAGACGGATGAGTATAGGAATGTGTAAAAAAGCACATGCATTGATGACACCATGAGTCGGGTGATGAAAGATCTTCACGGTATGTTCTGTAAGCATATTAGCTAATTACCCTGTTTTGGATCCTTTTCAGTCAGCAATCCTCGCTTATTTTATTTCTTGTATGTTTTTTTTCTAAAATAATTGCCATGTGTTGTGAACTTCCGGTAAAAATGTTTACTTTTCTAATAATATTACCAAATGTGGGGGTTAAACTTCTCTGTCCTTTGTATTTATTCGTTTACAAGCTTTTACAGAGGTTTCTGCCTTCAATTACTACTGTGTTATATGTGCCTGTACCTGCTTTATGCTGATGTATCTGGGTTCTCATTGATTTACTCCTTGACACGTTTCATCAAATTGACAGATGTTCTCTTCAATGATTAAAAATATGAGTC</genome_strand>
        <mrna_strand>TCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCTTCAATGATTAAAAATATGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201633" ref_strand="+" ref_description="SGN-E201633 [cLEC-11-B15]">
      <seq>gtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctcccttatcaagttcagagtctttggaggctctaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatgctcctttcaaggagaaaatccctttcttaaaaaaggatcctcaaatagctatggccctggctcagttcctacaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9730" stop="12050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10030" g_stop="10175" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10176" i_stop="11471" i_length="1296">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11472" g_stop="11750" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="425" r_length="279" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E201633" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10030" e_stop="10175"/>
          <exon e_start="11472" e_stop="11750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAA</genome_strand>
        <mrna_strand>GTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTCTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATGCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGATCCTCAAATAGCTATGGCCCTGGCTCAGTTCCTACAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205652" ref_strand="+" ref_description="SGN-E205652 [cLEC-21-J18]">
      <seq>ctttggaggctttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9839" stop="12287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10139" g_stop="10175" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10176" i_stop="11471" i_length="1296">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11472" g_stop="11987" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="553" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E205652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10139" e_stop="10175"/>
          <exon e_start="11472" e_stop="11987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCT</genome_strand>
        <mrna_strand>CTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228258" ref_strand="+" ref_description="SGN-E228258 [cLED-2-B20]">
      <seq>tttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9849" stop="12301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10149" g_stop="10175" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10176" i_stop="11471" i_length="1296">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11472" g_stop="12001" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="557" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E228258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10149" e_stop="10175"/>
          <exon e_start="11472" e_stop="12001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGA</genome_strand>
        <mrna_strand>TTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301603" ref_strand="+" ref_description="SGN-E301603 [cLEW-23-N16]">
      <seq>atgtgacacccgacatgctgaaaatggggactgatttgatgggcaaaatgtctccacaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatgagaaaccgaatgaaagatccagccatgagacagatgttctcttcaatgattaaaaatatgagtccagagatgatgtctaacatgagtgaacaatttggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11405" stop="14587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11705" g_stop="12033" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12034" i_stop="14218" i_length="2185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14219" g_stop="14287" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="398" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E301603" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11705" e_stop="12033"/>
          <exon e_start="14219" e_stop="14287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAGGTTTGACTTCAATCCTTTCTTGTGGAAATAGTATTTGTCCTCTGTTCTTTATTTTTATATTTGATGCATATTAGGGGCTTTATTATTTTCTGGGTAGTGATATGTATTTTAGTATTGCCTATACCATCAATAAAGATCCAATCATATTTCCCTAATGTTCACACTGCTAACTCAAAAAATCCTGATTTGAATTTGTCAAATACCCTAGTTCCTCCACTAACCAAATCATTATTTCTTACTTTTCTCTGTTTTAAGATAGATACTGTTCCACTTTGAATTTTTGGTAGTCCATATTTGAAAGAGAAACAACCCCTACCTTGTGAGGTAAAGAGGATGTTTCTAATAGACGCTCAGCTGAAGGAGCAACATATCAAAGTAGTCCGAAAAAAGAAATATGGAATTGAATTGGCCATGACAAATAATATAGGAAGCATGAAAAATGAGTTGTTACTACAACTGAATGCTTAGATAATTGAAGCACAGAAAACAATAGATTGTAACAGAAATCGAAGAACAATTCCTACAATCGTAGTACTACTAATACGGGTGTTGGATGAGAAGCTAGACAATGCACCTCAACGCTAATTTTTGTCCTTCATTACCTCCTATTTAAGGTCATGTCCTCGGTCAATTGACGTTGCGTCATGTCCTGTCTAATCACTTCTCCTCGATACTTCTTCGGCCTACGTTTACCGCTCTTAAAACCTACCAAAGCTATCTTCTCACACCTCAACACCAGGGTGTCTGTGCATCTTTTTTTCACATGCCTCAACATTGCTTCCCTTCAATATATTTGTTTACTTTGGCTGAACACCAAATCCCAAACTGAATGCTATCATCATATTTAATGGAACTACCTGGCGAACAGATTGACCGACTCTCTCAGGGTGTTTCCTCCATTAGCTCTTGTTGCTCCAATAATGTAATTACACTTGCAAGGAATATTGAAATTTGAACCGGAAGCAAGCACCATACCCACAGATGCCCCCTCTCAAATAATAAATACAAGCAGCCTTGTCGGGTCGTATATGATACGATCTGGGCCACTGCCTACCGACAATTGCCACATAGAAATCTTAATTGAACGTCCATATCTTTCAGTTTTCCTCCATCTCCGGGTAGAAATGAACGCGGGACGTTTGATGTCTTACTCGTTTAGATACGATGAGATAATCATCAACTAGGTTGCTCGGACTCTTCACTTTTGGTGCTGCACCCGTGTCCATACGACATGGGTGTGGGTGTGAGATGTGTGTCTGATTTGGTCAACCGATTGTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTAGAAATTTCTATGTCACTGTTTTTCCTTTAATCTCCTTCAAGGATTCTCCTCATGTTCTCCACATAATATCTCATAATGTAGGTTTTATAACTCTATTTTTAGGCGAATCCCCGCCTATTTTCATATATGGGTCCATATCCCTGAATCTTAAAAATTAAATCACGAATGATCCAACCTGTAGATCCATACCCATATTGGACAGCCGAGTCTGAGCAACTTAGATCATCAAAGTTGGGGAATCTCAACTGGAATACCTCACTGTGCCAGTACCGGTTGTGAGCCACATTCGGCGAAGAGTTTCTGTTCTTTGTCCCCTAAATGCATTTTAAATTGCGAGTAAAATAAAAATAATTAGTGGAATCTATAGGTGTAGCTAAAGACAATTTCGGAAATTAGAAACGTATTCGTTTTTTGTTTGGGGTGAGCTCACTACATTGTCTCATTGAGTAGTGTTTCCTCATAAAGGAAAGAGAGACGGATGAGTATAGGAATGTGTAAAAAAGCACATGCATTGATGACACCATGAGTCGGGTGATGAAAGATCTTCACGGTATGTTCTGTAAGCATATTAGCTAATTACCCTGTTTTGGATCCTTTTCAGTCAGCAATCCTCGCTTATTTTATTTCTTGTATGTTTTTTTTCTAAAATAATTGCCATGTGTTGTGAACTTCCGGTAAAAATGTTTACTTTTCTAATAATATTACCAAATGTGGGGGTTAAACTTCTCTGTCCTTTGTATTTATTCGTTTACAAGCTTTTACAGAGGTTTCTGCCTTCAATTACTACTGTGTTATATGTGCCTGTACCTGCTTTATGCTGATGTATCTGGGTTCTCATTGATTTACTCCTTGACACGTTTCATCAAATTGACAGATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTG</genome_strand>
        <mrna_strand>ATGTGACACCCGACATGCTGAAAATGGGGACTGATTTGATGGGCAAAATGTCTCCACAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539696" ref_strand="-" ref_description="SGN-E539696 [TUS-59-J10]">
      <seq>tcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatgagaaaccgaatgaaagatccagccatgagacagatgttctcttcaatgattaaaaatatgagtccagagatgatgtctaacatgagtgaacaatttggggtgaagctcagtcaggcagatgcagagaaagctcaacaggcaatgtcatctttgtcaccagatgacttggaaaagatgatgaagtgggctgatagaattcaaagaggagttgaaggtgcgaagaagacaaaaaattggctcttaggaaaacctggcatgatcttggctatacttgtgctacttttagcagtcatccttcacaagctgggcttcatcgggagctaaacttgacgttctagccaaatattagcatgaagagttgagtagagtttggaatccttgtcctaatgtacttgaaatggggatatcagtgggtaaaccttggttggagatgacattagttactttctgttacattacgctttttttttctttctttacttgggtgtttgcagatgtaacttaaacttcacaaattatttagttcgctgttttgcggtagaactcgccgtttctagatgaagttttggtaagactaccctttacaaattcagaaaaccaaaaacaacacaaaaaaaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11553" stop="15824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11853" g_stop="12033" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12034" i_stop="14218" i_length="2185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14219" g_stop="14362" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="325" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14363" i_stop="15098" i_length="736">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15099" g_stop="15515" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="743" r_length="418" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="770"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E539696" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539696" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11853" e_stop="12033"/>
          <exon e_start="14219" e_stop="14362"/>
          <exon e_start="15099" e_stop="15515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAGGTTTGACTTCAATCCTTTCTTGTGGAAATAGTATTTGTCCTCTGTTCTTTATTTTTATATTTGATGCATATTAGGGGCTTTATTATTTTCTGGGTAGTGATATGTATTTTAGTATTGCCTATACCATCAATAAAGATCCAATCATATTTCCCTAATGTTCACACTGCTAACTCAAAAAATCCTGATTTGAATTTGTCAAATACCCTAGTTCCTCCACTAACCAAATCATTATTTCTTACTTTTCTCTGTTTTAAGATAGATACTGTTCCACTTTGAATTTTTGGTAGTCCATATTTGAAAGAGAAACAACCCCTACCTTGTGAGGTAAAGAGGATGTTTCTAATAGACGCTCAGCTGAAGGAGCAACATATCAAAGTAGTCCGAAAAAAGAAATATGGAATTGAATTGGCCATGACAAATAATATAGGAAGCATGAAAAATGAGTTGTTACTACAACTGAATGCTTAGATAATTGAAGCACAGAAAACAATAGATTGTAACAGAAATCGAAGAACAATTCCTACAATCGTAGTACTACTAATACGGGTGTTGGATGAGAAGCTAGACAATGCACCTCAACGCTAATTTTTGTCCTTCATTACCTCCTATTTAAGGTCATGTCCTCGGTCAATTGACGTTGCGTCATGTCCTGTCTAATCACTTCTCCTCGATACTTCTTCGGCCTACGTTTACCGCTCTTAAAACCTACCAAAGCTATCTTCTCACACCTCAACACCAGGGTGTCTGTGCATCTTTTTTTCACATGCCTCAACATTGCTTCCCTTCAATATATTTGTTTACTTTGGCTGAACACCAAATCCCAAACTGAATGCTATCATCATATTTAATGGAACTACCTGGCGAACAGATTGACCGACTCTCTCAGGGTGTTTCCTCCATTAGCTCTTGTTGCTCCAATAATGTAATTACACTTGCAAGGAATATTGAAATTTGAACCGGAAGCAAGCACCATACCCACAGATGCCCCCTCTCAAATAATAAATACAAGCAGCCTTGTCGGGTCGTATATGATACGATCTGGGCCACTGCCTACCGACAATTGCCACATAGAAATCTTAATTGAACGTCCATATCTTTCAGTTTTCCTCCATCTCCGGGTAGAAATGAACGCGGGACGTTTGATGTCTTACTCGTTTAGATACGATGAGATAATCATCAACTAGGTTGCTCGGACTCTTCACTTTTGGTGCTGCACCCGTGTCCATACGACATGGGTGTGGGTGTGAGATGTGTGTCTGATTTGGTCAACCGATTGTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTAGAAATTTCTATGTCACTGTTTTTCCTTTAATCTCCTTCAAGGATTCTCCTCATGTTCTCCACATAATATCTCATAATGTAGGTTTTATAACTCTATTTTTAGGCGAATCCCCGCCTATTTTCATATATGGGTCCATATCCCTGAATCTTAAAAATTAAATCACGAATGATCCAACCTGTAGATCCATACCCATATTGGACAGCCGAGTCTGAGCAACTTAGATCATCAAAGTTGGGGAATCTCAACTGGAATACCTCACTGTGCCAGTACCGGTTGTGAGCCACATTCGGCGAAGAGTTTCTGTTCTTTGTCCCCTAAATGCATTTTAAATTGCGAGTAAAATAAAAATAATTAGTGGAATCTATAGGTGTAGCTAAAGACAATTTCGGAAATTAGAAACGTATTCGTTTTTTGTTTGGGGTGAGCTCACTACATTGTCTCATTGAGTAGTGTTTCCTCATAAAGGAAAGAGAGACGGATGAGTATAGGAATGTGTAAAAAAGCACATGCATTGATGACACCATGAGTCGGGTGATGAAAGATCTTCACGGTATGTTCTGTAAGCATATTAGCTAATTACCCTGTTTTGGATCCTTTTCAGTCAGCAATCCTCGCTTATTTTATTTCTTGTATGTTTTTTTTCTAAAATAATTGCCATGTGTTGTGAACTTCCGGTAAAAATGTTTACTTTTCTAATAATATTACCAAATGTGGGGGTTAAACTTCTCTGTCCTTTGTATTTATTCGTTTACAAGCTTTTACAGAGGTTTCTGCCTTCAATTACTACTGTGTTATATGTGCCTGTACCTGCTTTATGCTGATGTATCTGGGTTCTCATTGATTTACTCCTTGACACGTTTCATCAAATTGACAGATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATGGTAATTAATCAAAATATCCTATCCCCCTTTTCTCTGTTTCTCTTAAAGAAGATGTGTACTTTCCTCATTAAGTTGTTTTGTATCATTGTGATTCACGTGATCGGCACTGCGTCTTCACTTAGAACCGATAGATTTTTTTCCCAATCAATGAAAAACCCGCAACGACTCGTGTCTGGTCCAGAAAAAAACTAAATGTTCATTGAGCCTTGAGAAGTCATAGGAGAAAGATTAAGATATTATCACTTTAAAGGGGAGCACATATGATTGAAGTGTTGCTTGTCTTTTCAACTTTATAGTGGGTGTACATTTTTATCTTCTCCAGATGGGAGTGTGTCGAGCATCATGCTTTGGATATGAGGTTTTGTTGTAATTTGGCGTTTGCAAATTGGATTCTTTAATGAAATAAACACTGGTTATAGTTAAGTTCCAATGTTTTGCTATTAGCCATGGTGATGTTTAATTCTAACACGTCTTCTAGCGTCTTGTTACAATATAAATAGAATATGTAAACCACGAGAACCACGTGAGTAGTAGGGCTTGAGCTCTTGAGGAATTTCTGTCACCTAATTATTTTCTGGGTTTTGTAGTTATTTAGTTTCCAGGTAGTTCGCATCATCTCTTTGTTTTAAGTTAGTGACAAGCCTCATATTTTAACCATCTTTTCTAACCTTTGTCTTGTGTGTTATACACTTCACTGTTGCACAAGGTAAATCTATATTTTTTCCGAATATTGCAGATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTT-TGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTAAGAA</genome_strand>
        <mrna_strand>TCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTCCTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTTCTGTTACATTACGCTTTTTTTTTCTTTCTTTACTTGGGTGTTTGCAGATGTAACTTAAACTTCACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283687" ref_strand="-" ref_description="SGN-E283687 [cLES-1-P16]">
      <seq>agtgggctgatagaattcaaaaaggagttgaaggtgcgaagaaaacaaaaaattggctcttaggaaaacctggcatgatcttggctatacttgtgctacttttagcagtcatccttcacaagctgggcttcatcgggagctaaacttgacgttctagccaaatattagcatgaagagttgagtagagtttggaatccttgtactaatgtacttgaaatggggatatcagtgggtaaaccttggttggaaatgacattagttacttttgttatattacgctttttttttctttctttatttgggtgtttgtagatgtaacttaaacttgaccaattatttagttcgctgttttgcggtagaactcgccgtttctaaatgaagttttggtaagactaccctttgcaaattaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14803" stop="15823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15103" g_stop="15515" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="442"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E283687" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283687" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15103" e_stop="15515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTTTGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTAAGAA</genome_strand>
        <mrna_strand>AGTGGGCTGATAGAATTCAAAAAGGAGTTGAAGGTGCGAAGAAAACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAAATGACATTAGTTACTTTTGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACCAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAAATGAAGTTTTGGTAAGACTACCCTTTGCAAATTAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241809" ref_strand="+" ref_description="SGN-E241809 [cLED-27-E21]">
      <seq>gaagaagaaagaggaggattcatggaagtcgatgaagaataataagaatgtttacctaggtgcctacgatgaagacgacggcgatcgggagaaatttgacggtgaaaacgacgacggagtacgggaagccgccgattttgaaacggaaatgtgggaccggttctatggagctggattttggaggactctatcacagagagaggaggacttagcatggcataatcaaaataagtaaggacttaaaatgcaattataattataattaagaagaaaaaaaaggtgaaagagacagaaattgaagattaatggatttgtacattgtgtattttgcccaaaaaacgttgggtggagtaataattcattgaacacggtttttaggtggacacaccgttgattttttctttcttaatataaaaaaaatcccttagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16796" stop="15761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16496" g_stop="16057" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E241809" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16496" e_stop="16057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAAGTAATGAG</genome_strand>
        <mrna_strand>GAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392880" ref_strand="+" ref_description="SGN-E392880 [TUS-36-L4](-)">
      <seq>agaagaagaaagaggaggattcatggaagtcgatgaagaataataagaatgtttacctaggtgcctacgatgaagacgacggcgatcgggagaaatttgacggtgaaaacgacgacggagtacgggaagccgccgattttgaaacggaaatgtgggaccggttttatggagctggattttggaggactttatcacagagagaggaggacttagcatggcataatcaaaataagtaaggacttaaaatgcaattataattataattaagaagaaaaaaaaggtgaaagagacagaaattgaagattaatggatttgtacattgtgtattttgcccaaaaaacgttgggtggagtaataattcattgaacacggtttttaggtggacacaccgttgattttttcttttttaatataaaaaaaatcccttagagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16797" stop="15756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16497" g_stop="16065" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="445"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E392880" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16497" e_stop="16065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAA</genome_strand>
        <mrna_strand>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTTTATGGAGCTGGATTTTGGAGGACTTTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTTTTAATATAAAAAAAATCCCTTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392784" ref_strand="+" ref_description="SGN-E392784 [TUS-36-L4]">
      <seq>agaagaagaaagaggaggattcatggaagtcgatgaagaataataagaatgtttacctaggtgcctacgatgaagacgacggcgatcgggagaaatttgacggtgaaaacgacgacggagtacgggaagccgccgattttgaaacggaaatgtgggaccggttctatggagctggattttggaggactctatcacagagagaggaggacttagcatggcataatcaaaataagtaaggacttaaaatgcaattataattataattaagaagaaaaaaaaggtgaaagagacagaaattgaagattaatggatttgtacattgtgtattttgcccaaaaaacgttgggtggagtaataattcattgaacacggtttttaggtggacacaccgttgattttttctttcttaatataaaaaaaatcccttagagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16797" stop="15756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16497" g_stop="16065" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="446"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E392784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16497" e_stop="16065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAA</genome_strand>
        <mrna_strand>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237478" ref_strand="+" ref_description="SGN-E237478 [cLED-19-A6]">
      <seq>aagaagaaagaggaggattcatggaagtcgatgaagaataataagaatgtttacctaggtgcctacgatgaagacgacggcgatcgggagaaatttgacggtgaaaacgacgacggagtacgggaagccgccgattttgaaacggaaatgtgggaccggttctatggagctggattttggaggactctatcacagagagaggaggacttagcatggcataatcaaaataagtaaggacttaaaatgcaattataattataattaagaagaaaaaaaaggtgaaagagacagaaattgaagattaatggatttgtacattgtgtattttgcccaaaaaacgttgggtggagtaataattcattgaacacggtttttaggtggacacaccgttgatttttttctttcttaatataaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16795" stop="15776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16495" g_stop="16076" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E237478" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16495" e_stop="16076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGA-TTTTTTCTTTCTTAATATAAAAAAAAT</genome_strand>
        <mrna_strand>AAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTTCTTTCTTAATATAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324342" ref_strand="+" ref_description="SGN-E324342 [cTOC-6-I5]">
      <seq>tcttcctcgctttttctttctgtggttacctctcaaaaaacccaaattcatctgatcaatttgatcctccctattagttgaagcttttttgagatggaggagggcaagatgtctgaggatattttgacttcggctgcagcatttgtggaaggtggaattcaagatgcctgcgatgatgcttgcagcatatgtcttgacgaattttctgatagtgatccttctacagtgacaggctgcaagcatgagttccatcttcagtgtattctagaatggtgtcaaagaagctcccagtgccccatgtgttggcaacctctcagcttgaaagaccccaacagccaggaattgttggatgcagtagagcacgagaggaacatcaggatgaatcctcctagaaacaccacaatcttccaccatccaactttaggagattttgagttgcagcatttaccggtaagcgcaactgactctgagcttgaagagcgtatcattcagcacttagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19389" stop="22438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19689" g_stop="19781" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19782" i_stop="20499" i_length="718">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20500" g_stop="20631" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="225" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20632" i_stop="20712" i_length="81">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20713" g_stop="20759" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="272" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="21721" i_length="962">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21722" g_stop="21784" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="335" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21785" i_stop="21881" i_length="97">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21882" g_stop="21990" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="444" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21991" i_stop="22078" i_length="88">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22079" g_stop="22138" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="504" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E324342" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19689" e_stop="19781"/>
          <exon e_start="20500" e_stop="20631"/>
          <exon e_start="20713" e_stop="20759"/>
          <exon e_start="21722" e_stop="21784"/>
          <exon e_start="21882" e_stop="21990"/>
          <exon e_start="22079" e_stop="22138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAGGTAAATCTTTGTCTTGTGATTTTGATCAATTTTAATTTAATGGGTGTTTGAAATTTAGCTTCTTTTTACTAATTGGAGTACTGGGTTGTGTTTTCTTTTTCCTTTCCCCCTTTTTCTAGTTCAGATTATTCTGATGTGGGTTTACTTTTTTTTTTTTTTTGGAAAGGGATAATTAAATGATGATTTTGGTATTTGATATATGTTGATTATTTTAATTTTAAAGATGGTGTTAGATTGTGTGGTGATATTTGGGGGTGGGTGGGGTGACTCTTTTAGTACTAGTGATGAGTTTGAGATGTTGTTCTATAAAGTTTGTTTGATAAAAATGGAATCTTGGGGTTTTTCTCTGAGATGTTGTTGGAAGTGTATTATTCAGTTATGAATTTTTAATCAAAGATAAAAAAAAAAATGGAAATCGATACGCGTTAGACGGAAAAGAAACTTAAATCAAGTGAGACATTGTATCGTCTCTATGTTTTTTTTTTTGATAAAGTTAAAGTTATTGTATTGTCTCTATGTAGCATTTGGTTTTCACCTGCAATGAAGCAGTCATATTACCAGTGTAAGTAAAAACCAGACAAGGTTGATAATTTGTTGTTGAGGGTTTTCTTTAGATTTTTCTAACTTTGCGTATGGGATTAGAAGTTAGAATGCTTGTTGTTTTCTTGGTTTCTTTATTAAAGTAGAGTAATATCTGAAAGGTTTTATCTTTCGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACAGTATGTATTCTTCACATTATCCGGTATTAGCGTGGAAAGTAATGCTTCATCGTGGAGTAATATTTATCTTTCAACTTGTAGGTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATGGTGAGCGAAACAATTCTCTGTTAATTAGATGTCTCATGTCTAAACTGTTCTTTCACTCTTTCTGATCATAACCTTTTATGACTTCCCCAAAAGATGACATTTTGTGGATTTTGATGGCTGCCTTAGGACCTTTGTTCCTCTCATGCCGCAAAGATGAGTTTTAGGCTCTCTTGTGTAAAATTAGAATTTCTCTATGGAGTGCCTCTGGTGGGAACATATAAGCTAGATAGGGATTTTGGAGTTCCTCTTTGTATCTGATATATTACTCTGTTGCCCAACTTTTGGATGTCATGGTTTTGTTGGAGGATTATGTGTTCCTATTGAACAGTTTGCTTGAAGATGTAAGAGAAAGGTGGTCATTTTGATTTCAGCACTGTGATTCTTTCTGATAAGTAACACACCATAAATAAATAGTGCTAGATGTTGCTCAGTGATTGTGACTATAGTGGAACATAATCATAATTGATGACTCAGAAAAGGGTGTGACATCCTTAGTCTCTTCTATGATTTTTGGTGTTTCATCTCATCTGATCTTTTTACTGACTGCCCAGTCAGCAGGAGGAGGGGGTTGTTCTTACTGTTGGTTTCTTGCTCTTTCTGTCTGGAATAATAAATGAGTGAACAACATGATGAAAAGTCGCTTCTTGAATCACCAAAATCTCCTATTACCATTATTCCAACTGAATCCATTGGAAGTTAAATGCAAATTGTGTTAATTGATTGGATCATGATTAGATTTGCTATTTTGATATGAAAGTTAGATAAAGATGAGCATTTGATTTCGTACTTCATATTTTTTGGAACAAAGTTGTGTTCCTTAGAAATTGTCATGGAAGATTATCATTTGAAAAATTATGAGCTTTGGATCTTGATTGTATATGCTGCAAACTGTGTCAAGAAGGCATGCATAGAGCTTTATTTCGTGGTGAATATCCTGATTATTTTGAATGCATGTGTTGTAGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAGGTTCTATTCTGTTCTCAAATCAGCCACTTGCTTATCACTCCATGATCTTTCTAAGTCCTCCTTCAAAGGCTTATTGATAAATGTGCTTCTCTTACAGCCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCATGTTAGCATTTTTTAAGTCAACACATTTTTTTCTTCTTATAATCTGTTTATGGTCCATTTTGTGATCTTGTGGCACATTTCTTTCACAGTTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCT</genome_strand>
        <mrna_strand>TCTTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAAGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACA.................................................................................GTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAG.................................................................................................CCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCAT........................................................................................TTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206131" ref_strand="+" ref_description="SGN-E206131 [cLEC-29-B18]">
      <seq>ttcctcgctttttctttctgtggttacctctcaaaaaacccaaattcatctgatcaatttgatcctccctattagttgaagcttttttgagatggaggagggcaagatgtctgaggatattttgacttcggctgcagcatttgtggaaggtggaattcaggatgcctgcgatgatgcttgcagcatatgtcttgacgaattttctgatagtgatccttctacagtgacaggctgcaagcatgagttccatcttcagtgtattctagaatggtgtcaaagaagctcccagtgccccatgtgttggcaacctctcagcttgaaagaccccaacagccaggaattgttggatgcagtagagcacgagaggaacatcaggatgaatcctcctagaaacaccacaatcttccaccatccaactttaggagattttgagttgcagcatttaccggtaagcgcaactgactctgagcttgaagagcgtatcattcagcacttagctgctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19391" stop="22441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19691" g_stop="19781" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19782" i_stop="20499" i_length="718">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20500" g_stop="20631" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="223" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20632" i_stop="20712" i_length="81">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20713" g_stop="20759" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="270" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="21721" i_length="962">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21722" g_stop="21784" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="333" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21785" i_stop="21881" i_length="97">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21882" g_stop="21990" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="442" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21991" i_stop="22078" i_length="88">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22079" g_stop="22141" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="505" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E206131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19691" e_stop="19781"/>
          <exon e_start="20500" e_stop="20631"/>
          <exon e_start="20713" e_stop="20759"/>
          <exon e_start="21722" e_stop="21784"/>
          <exon e_start="21882" e_stop="21990"/>
          <exon e_start="22079" e_stop="22141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAGGTAAATCTTTGTCTTGTGATTTTGATCAATTTTAATTTAATGGGTGTTTGAAATTTAGCTTCTTTTTACTAATTGGAGTACTGGGTTGTGTTTTCTTTTTCCTTTCCCCCTTTTTCTAGTTCAGATTATTCTGATGTGGGTTTACTTTTTTTTTTTTTTTGGAAAGGGATAATTAAATGATGATTTTGGTATTTGATATATGTTGATTATTTTAATTTTAAAGATGGTGTTAGATTGTGTGGTGATATTTGGGGGTGGGTGGGGTGACTCTTTTAGTACTAGTGATGAGTTTGAGATGTTGTTCTATAAAGTTTGTTTGATAAAAATGGAATCTTGGGGTTTTTCTCTGAGATGTTGTTGGAAGTGTATTATTCAGTTATGAATTTTTAATCAAAGATAAAAAAAAAAATGGAAATCGATACGCGTTAGACGGAAAAGAAACTTAAATCAAGTGAGACATTGTATCGTCTCTATGTTTTTTTTTTTGATAAAGTTAAAGTTATTGTATTGTCTCTATGTAGCATTTGGTTTTCACCTGCAATGAAGCAGTCATATTACCAGTGTAAGTAAAAACCAGACAAGGTTGATAATTTGTTGTTGAGGGTTTTCTTTAGATTTTTCTAACTTTGCGTATGGGATTAGAAGTTAGAATGCTTGTTGTTTTCTTGGTTTCTTTATTAAAGTAGAGTAATATCTGAAAGGTTTTATCTTTCGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACAGTATGTATTCTTCACATTATCCGGTATTAGCGTGGAAAGTAATGCTTCATCGTGGAGTAATATTTATCTTTCAACTTGTAGGTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATGGTGAGCGAAACAATTCTCTGTTAATTAGATGTCTCATGTCTAAACTGTTCTTTCACTCTTTCTGATCATAACCTTTTATGACTTCCCCAAAAGATGACATTTTGTGGATTTTGATGGCTGCCTTAGGACCTTTGTTCCTCTCATGCCGCAAAGATGAGTTTTAGGCTCTCTTGTGTAAAATTAGAATTTCTCTATGGAGTGCCTCTGGTGGGAACATATAAGCTAGATAGGGATTTTGGAGTTCCTCTTTGTATCTGATATATTACTCTGTTGCCCAACTTTTGGATGTCATGGTTTTGTTGGAGGATTATGTGTTCCTATTGAACAGTTTGCTTGAAGATGTAAGAGAAAGGTGGTCATTTTGATTTCAGCACTGTGATTCTTTCTGATAAGTAACACACCATAAATAAATAGTGCTAGATGTTGCTCAGTGATTGTGACTATAGTGGAACATAATCATAATTGATGACTCAGAAAAGGGTGTGACATCCTTAGTCTCTTCTATGATTTTTGGTGTTTCATCTCATCTGATCTTTTTACTGACTGCCCAGTCAGCAGGAGGAGGGGGTTGTTCTTACTGTTGGTTTCTTGCTCTTTCTGTCTGGAATAATAAATGAGTGAACAACATGATGAAAAGTCGCTTCTTGAATCACCAAAATCTCCTATTACCATTATTCCAACTGAATCCATTGGAAGTTAAATGCAAATTGTGTTAATTGATTGGATCATGATTAGATTTGCTATTTTGATATGAAAGTTAGATAAAGATGAGCATTTGATTTCGTACTTCATATTTTTTGGAACAAAGTTGTGTTCCTTAGAAATTGTCATGGAAGATTATCATTTGAAAAATTATGAGCTTTGGATCTTGATTGTATATGCTGCAAACTGTGTCAAGAAGGCATGCATAGAGCTTTATTTCGTGGTGAATATCCTGATTATTTTGAATGCATGTGTTGTAGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAGGTTCTATTCTGTTCTCAAATCAGCCACTTGCTTATCACTCCATGATCTTTCTAAGTCCTCCTTCAAAGGCTTATTGATAAATGTGCTTCTCTTACAGCCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCATGTTAGCATTTTTTAAGTCAACACATTTTTTTCTTCTTATAATCTGTTTATGGTCCATTTTGTGATCTTGTGGCACATTTCTTTCACAGTTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCG</genome_strand>
        <mrna_strand>TTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACA.................................................................................GTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAG.................................................................................................CCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCAT........................................................................................TTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300876" ref_strand="+" ref_description="SGN-E300876 [cLEW-8-P1]">
      <seq>tttctttttgtggttacctctcaaaaaacccaaattcatctgatcaatttgatcctccctattagttgaagcttttttgagatggaggagggcaagatgtctgaggatattttgacttcggctgcagcatttgtggaaggtggaattcaggatgcctgcgatgatgcttgcagcatatgtcttgacgaattttctgatagtgatccttctacagtgacaggctgcaagcatgagttccatcttcagtgtattctagaatggtgtcaaagaagctcccagtgccccatgtgttggcaacctctcagcttgaaagaccccaacagccaggaattgttggatgcagtagagcacgagaggaacatcaggatgaatcctcctagaaacaccacaatcttccaccatccaactttaggagattttgagttgcagcatttaccggtaagcgcaactgactctgagcttgaagagcgtatcattcagcacttagctgctgcggctgccatgggaagggcacggcacattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19401" stop="22471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19701" g_stop="19781" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19782" i_stop="20499" i_length="718">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20500" g_stop="20631" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="213" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20632" i_stop="20712" i_length="81">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20713" g_stop="20759" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="260" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20760" i_stop="21721" i_length="962">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21722" g_stop="21784" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="323" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21785" i_stop="21881" i_length="97">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21882" g_stop="21990" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="432" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21991" i_stop="22078" i_length="88">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22079" g_stop="22171" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="525" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E300876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19701" e_stop="19781"/>
          <exon e_start="20500" e_stop="20631"/>
          <exon e_start="20713" e_stop="20759"/>
          <exon e_start="21722" e_stop="21784"/>
          <exon e_start="21882" e_stop="21990"/>
          <exon e_start="22079" e_stop="22171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAGGTAAATCTTTGTCTTGTGATTTTGATCAATTTTAATTTAATGGGTGTTTGAAATTTAGCTTCTTTTTACTAATTGGAGTACTGGGTTGTGTTTTCTTTTTCCTTTCCCCCTTTTTCTAGTTCAGATTATTCTGATGTGGGTTTACTTTTTTTTTTTTTTTGGAAAGGGATAATTAAATGATGATTTTGGTATTTGATATATGTTGATTATTTTAATTTTAAAGATGGTGTTAGATTGTGTGGTGATATTTGGGGGTGGGTGGGGTGACTCTTTTAGTACTAGTGATGAGTTTGAGATGTTGTTCTATAAAGTTTGTTTGATAAAAATGGAATCTTGGGGTTTTTCTCTGAGATGTTGTTGGAAGTGTATTATTCAGTTATGAATTTTTAATCAAAGATAAAAAAAAAAATGGAAATCGATACGCGTTAGACGGAAAAGAAACTTAAATCAAGTGAGACATTGTATCGTCTCTATGTTTTTTTTTTTGATAAAGTTAAAGTTATTGTATTGTCTCTATGTAGCATTTGGTTTTCACCTGCAATGAAGCAGTCATATTACCAGTGTAAGTAAAAACCAGACAAGGTTGATAATTTGTTGTTGAGGGTTTTCTTTAGATTTTTCTAACTTTGCGTATGGGATTAGAAGTTAGAATGCTTGTTGTTTTCTTGGTTTCTTTATTAAAGTAGAGTAATATCTGAAAGGTTTTATCTTTCGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACAGTATGTATTCTTCACATTATCCGGTATTAGCGTGGAAAGTAATGCTTCATCGTGGAGTAATATTTATCTTTCAACTTGTAGGTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATGGTGAGCGAAACAATTCTCTGTTAATTAGATGTCTCATGTCTAAACTGTTCTTTCACTCTTTCTGATCATAACCTTTTATGACTTCCCCAAAAGATGACATTTTGTGGATTTTGATGGCTGCCTTAGGACCTTTGTTCCTCTCATGCCGCAAAGATGAGTTTTAGGCTCTCTTGTGTAAAATTAGAATTTCTCTATGGAGTGCCTCTGGTGGGAACATATAAGCTAGATAGGGATTTTGGAGTTCCTCTTTGTATCTGATATATTACTCTGTTGCCCAACTTTTGGATGTCATGGTTTTGTTGGAGGATTATGTGTTCCTATTGAACAGTTTGCTTGAAGATGTAAGAGAAAGGTGGTCATTTTGATTTCAGCACTGTGATTCTTTCTGATAAGTAACACACCATAAATAAATAGTGCTAGATGTTGCTCAGTGATTGTGACTATAGTGGAACATAATCATAATTGATGACTCAGAAAAGGGTGTGACATCCTTAGTCTCTTCTATGATTTTTGGTGTTTCATCTCATCTGATCTTTTTACTGACTGCCCAGTCAGCAGGAGGAGGGGGTTGTTCTTACTGTTGGTTTCTTGCTCTTTCTGTCTGGAATAATAAATGAGTGAACAACATGATGAAAAGTCGCTTCTTGAATCACCAAAATCTCCTATTACCATTATTCCAACTGAATCCATTGGAAGTTAAATGCAAATTGTGTTAATTGATTGGATCATGATTAGATTTGCTATTTTGATATGAAAGTTAGATAAAGATGAGCATTTGATTTCGTACTTCATATTTTTTGGAACAAAGTTGTGTTCCTTAGAAATTGTCATGGAAGATTATCATTTGAAAAATTATGAGCTTTGGATCTTGATTGTATATGCTGCAAACTGTGTCAAGAAGGCATGCATAGAGCTTTATTTCGTGGTGAATATCCTGATTATTTTGAATGCATGTGTTGTAGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAGGTTCTATTCTGTTCTCAAATCAGCCACTTGCTTATCACTCCATGATCTTTCTAAGTCCTCCTTCAAAGGCTTATTGATAAATGTGCTTCTCTTACAGCCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCATGTTAGCATTTTTTAAGTCAACACATTTTTTTCTTCTTATAATCTGTTTATGGTCCATTTTGTGATCTTGTGGCACATTTCTTTCACAGTTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCGGCTGCCATGGGAAGGGCACGGCACATTGCT</genome_strand>
        <mrna_strand>TTTCTTTTTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACA.................................................................................GTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAG.................................................................................................CCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCAT........................................................................................TTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCGGCTGCCATGGGAAGGGCACGGCACATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209809" ref_strand="+" ref_description="SGN-E209809 [cLEC-52-J16]">
      <seq>tctggtgttttcaactcatccaaatgctcctgctgctgctgctgttcctgcttcatcttctaaccagaggagtgggggtgaacccactcctgaagtctcggtttctggtcaggattctccagttattgctgttggagaaggttcgggacaactactttctcaacctccttttcaagctgatgaggtttctgcctctgggtcaggatcaaatactgctgttaatcaacttgggacttcgtcacataataggaggaatccttctcaatcttctactaacaatcaagacagagccggaccatcagattttcagtctttttcagattctatgaagtctcggtttagtgcaatgtccatgagatgcaaagaatctttaaccaagagttcaaggggttggaaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21922" stop="23422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22222" g_stop="22470" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22471" i_stop="22856" i_length="386">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22857" g_stop="22964" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="357" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22965" i_stop="23077" i_length="113">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23078" g_stop="23122" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="402" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E209809" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22222" e_stop="22470"/>
          <exon e_start="22857" e_stop="22964"/>
          <exon e_start="23078" e_stop="23122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTGTTTTCAACTCATCCAAATGCTCCTGCTGCTGCTGCTGTTCCTGCTTCATCTTCTAACCAGAGGAGTGGGGGTGAACCCACTCCTGAAGTCTCGGTTTCTGGTCAGGATTCTCCAGTTATTGCTGTTGGAGAAGGTTCGGGACAACTACTTTCTCAACCTCCTTTTCAAGCTGATGAGGTTTCTGCCTCTGGGTCAGGATCAAATACTGCTGTTAATCAACTTGGGACTTCGTCACATAATAGGTAATTTTGTGATTTTGTTTGTCAGACTCCAGAATTTTGATGGCTTCCACTTTCATTTTGCCGTACATGAGTTACATATTATAGTCACGGGACTGGATCCTCCAAAATGGAATGAGTTAGTAATTACTACCACAAAAAAGCCGCCACCCTCACCCTTATGAGGTGGGGGCACAACAAAAAGACCTTCTCGTGTATTTTGCCCTTTTTTGATGGCTATCTTATGCCTCTTAGTTCCCAATCACCATGAATGATGAGTACATGACCAAAGACTCAACATATCATAAATATTTAATTTTAAGTAAAAGGGGTAGAAGGGGGAAAGTAAAGGACGAATGAGTCCAATCTATTCTCTTATTTGTGCTTATTATTGAGTTACCCTATTGTAGGAGGAATCCTTCTCAATCTTCTACTAACAATCAAGACAGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAGGTACGTGGAAACTGTAATATCATCTTTTATCATTGTTCAGGTAACTTCTTAAACATCGGAAAATTTTAATTGTTTGTAAGTCCTATTTACTTGCTTTGATCATTGTTTTCCAGATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAG</genome_strand>
        <mrna_strand>TCTGGTGTTTTCAACTCATCCAAATGCTCCTGCTGCTGCTGCTGTTCCTGCTTCATCTTCTAACCAGAGGAGTGGGGGTGAACCCACTCCTGAAGTCTCGGTTTCTGGTCAGGATTCTCCAGTTATTGCTGTTGGAGAAGGTTCGGGACAACTACTTTCTCAACCTCCTTTTCAAGCTGATGAGGTTTCTGCCTCTGGGTCAGGATCAAATACTGCTGTTAATCAACTTGGGACTTCGTCACATAATAG..................................................................................................................................................................................................................................................................................................................................................................................................GAGGAATCCTTCTCAATCTTCTACTAACAATCAAGACAGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCCATGAG.................................................................................................................ATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322685" ref_strand="+" ref_description="SGN-E322685 [cTOB-26-F15]">
      <seq>agagccggaccatcagattttcagtctttttcagattctatgaagtctcggtttagtgcaatgtcaatgagatgcaaagaatctttaaccaagagttcaaggggttggaaggagagatttttctctcgcaacagttcaacatcagacaatgttcccgaacctaggaatgaagtgagggcagctgttgccactgtatcacacatgatggaccatctggaaactacagatagcagaaccagttctgctgaatcaaatatactggacactactttacctatcagagatgctgagcagcatatacctgagagtgatggtattcattctttaaatgaggatagtaggcaatccccgtgtgctgcaagtggttcaaactgaagttttatatgagttgaagcattttctcttcaaggtagatactcttgccagcatcgatgatatatggtgcgcatcttactgggtgtggtgaaacattaatcctttgaagtgcaacactgaatgttaagatatagagggatggatgtcgtcattttgtccaaaccatgtatatgtatgattatatagatgtaaattgacccattcntgggtagtagtactgatgacttncactgttctctttaatcttacatngaaccccccttcatatcttcatagacattgctggacaagtaattgaccaaggttttcttgggatcactagcaccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22594" stop="25376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22894" g_stop="22964" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22965" i_stop="23077" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23078" g_stop="23415" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="409" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23416" i_stop="24780" i_length="1365">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24781" g_stop="25077" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="705" r_length="296" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E322685" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22894" e_stop="22964"/>
          <exon e_start="23078" e_stop="23415"/>
          <exon e_start="24781" e_stop="25077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAGGTACGTGGAAACTGTAATATCATCTTTTATCATTGTTCAGGTAACTTCTTAAACATCGGAAAATTTTAATTGTTTGTAAGTCCTATTTACTTGCTTTGATCATTGTTTTCCAGATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAGGTAACTTGTCTTCTTCTAAGAGTTACAATTACTTTTGTCTCTCCATCCACCCTACTCCAAACTCAAACAAGAAAAAAAGAAACAGAAAACAGAAACAAAACATAGTGGAAGAACAGTAAGAAAAAAATGGAAGTTTTTTTTCCATGGATACTACATGCTAATGGTTTTTGTGGTCTCCAATGAGTTTGACACTTAGCACCTAGGAATATGATGATAGGATCTGCTCCTTATATTTCAAACACGTACACATTAGTGACAATGTGACATTGACACAGAAACCCTTTGTGTGTCGAAGCGAGTTGCTGTAGCAGTATACCATTGAGCATATTGACTGCCTTAATTATCATATGGATTCTGCTGCTTTCTGGCATATCCACATGACTACAAAATATCTCTGTCATGAGATGTATATTTTGGTCGATGTCCATAGAAAGAAACCATTGCTATTTTCAGGATAAACTTCTATTCTTATCTTAGTGTATTTCAGATGCACTAACAGAAATAGAAGTGCAGTGGGAGGCTTGGAAAAGACGCTAGAGTATTTTCTTTTGATTACAGTGGTATCCCCAGCCATCTTGTGTGCACCTCGGCTAATTCCATGGGGTACCTGCTACCTCCTACCAGCACAACTGCTGTCTAACTCTGTCGATCAAGGCTTGGATAGATAGGAAAAATAACCTAGTGTTTTATTTTCACTGGAATTTGAACCTGAGACGTCATGGTGATCATGCCTTTGAATCGACCACTAGGCCACCCTTGGGTACACATGCTATATTCTGGACTCCTCTCATATGTTAAGTCCTGGAATTCCCCATCACTATATCATGGAATATTAAACTTCTAAGAAGCTTTGGGTAAACTACTTACATTTGTATGCTAGGAATAATAGTAATGTGCAGAACTGCTCCTATGATGAACTTCAGTTGGACGTTCATACTTCTGTGGTGAATTGCTGTGACCCAATAGTTCATGGATAAGCTGATGAGGCACACTGATAAATGCTAACCTAAAGTTTTAGGTCTCCAAAGCTTTGTTAGTTTCACCATCATGAAGACTTGTCAAACATTTCCGTCTAGACGAATAATTTGTTCTGACCAGTGACCAATATCAAGTCCCATTAGAAGTGGTCTTACAAATATCACGGATAGACATTTGTCTCTTCCCATTTTCTTTTAGTACTATCTGGTACAAACCAGATTCTTCTTCTTCCTCTTTATCTCTCTCTTGGCTGTTGGAAGGCTGGTGTCTAGGACCAAAATAATCTGCATTTTTCTTGCAATTCCATTCATTCTAATGTAGTTTCTGGTTATGTCTTCTTGATAAACGACACTATCTGTCTATTACAGTGAATTTGTCTTTCTGCAGGTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTC-TGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTTTTCTTGGGATTCACTAGCACCACAT</genome_strand>
        <mrna_strand>AGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAG.................................................................................................................ATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCNTGGGTAGTAGTACTGATGACTTNCACTGTTCTCTTTAATCTTACATNGAACCCCCCTTCAT-ATCTTCATAGACATTGCTGGACAAGTAATTGACCAAGGTTTTCTTGGGA-TCACTAGCACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321972" ref_strand="+" ref_description="SGN-E321972 [cTOB-29-O8]">
      <seq>agagccggaccatcagattttcagtctttttcagattctatgaagtctcggtttagtgcaatgtcaatgagatgcaaagaatctttaaccaagagttcaaggggttggaaggagagatttttctctcgcaacagttcaacatcagacaatgttcccgaacctaggaatgaagtgagggcagctgttgccactgtatcacacatgatggaccatctggaaactacagatagcagaaccagttctgctgaatcaaatatactggacactactttacctatcagagatgctgagcagcatatacctgagagtgatggtattcattctttaaatgaggatagtaggcaatccccgtgtgctgcaagtggttcaaactgaagttttatatgagttgaagcattttctcttcaaggtagatactcttgccagcatcgatgatatatggtgcgcatcttactgggtgtggtgaaacattaatcctttgaagtgcaacactgaatgttaagatatagagggatggatgtcgtcattttgtccaaaccatgtatatgtatgattatatagatgtaaattgacccattctgggtagtagtactgatgacttcaactgttctctttaatcttacatgaaaccccccttcataatcttcatagacattgctggacagttaattgacaanggntttcttgggattcactagcacccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22594" stop="25376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22894" g_stop="22964" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22965" i_stop="23077" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23078" g_stop="23415" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="409" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23416" i_stop="24780" i_length="1365">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24781" g_stop="25073" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="702" r_length="293" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E321972" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22894" e_stop="22964"/>
          <exon e_start="23078" e_stop="23415"/>
          <exon e_start="24781" e_stop="25073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAGGTACGTGGAAACTGTAATATCATCTTTTATCATTGTTCAGGTAACTTCTTAAACATCGGAAAATTTTAATTGTTTGTAAGTCCTATTTACTTGCTTTGATCATTGTTTTCCAGATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAGGTAACTTGTCTTCTTCTAAGAGTTACAATTACTTTTGTCTCTCCATCCACCCTACTCCAAACTCAAACAAGAAAAAAAGAAACAGAAAACAGAAACAAAACATAGTGGAAGAACAGTAAGAAAAAAATGGAAGTTTTTTTTCCATGGATACTACATGCTAATGGTTTTTGTGGTCTCCAATGAGTTTGACACTTAGCACCTAGGAATATGATGATAGGATCTGCTCCTTATATTTCAAACACGTACACATTAGTGACAATGTGACATTGACACAGAAACCCTTTGTGTGTCGAAGCGAGTTGCTGTAGCAGTATACCATTGAGCATATTGACTGCCTTAATTATCATATGGATTCTGCTGCTTTCTGGCATATCCACATGACTACAAAATATCTCTGTCATGAGATGTATATTTTGGTCGATGTCCATAGAAAGAAACCATTGCTATTTTCAGGATAAACTTCTATTCTTATCTTAGTGTATTTCAGATGCACTAACAGAAATAGAAGTGCAGTGGGAGGCTTGGAAAAGACGCTAGAGTATTTTCTTTTGATTACAGTGGTATCCCCAGCCATCTTGTGTGCACCTCGGCTAATTCCATGGGGTACCTGCTACCTCCTACCAGCACAACTGCTGTCTAACTCTGTCGATCAAGGCTTGGATAGATAGGAAAAATAACCTAGTGTTTTATTTTCACTGGAATTTGAACCTGAGACGTCATGGTGATCATGCCTTTGAATCGACCACTAGGCCACCCTTGGGTACACATGCTATATTCTGGACTCCTCTCATATGTTAAGTCCTGGAATTCCCCATCACTATATCATGGAATATTAAACTTCTAAGAAGCTTTGGGTAAACTACTTACATTTGTATGCTAGGAATAATAGTAATGTGCAGAACTGCTCCTATGATGAACTTCAGTTGGACGTTCATACTTCTGTGGTGAATTGCTGTGACCCAATAGTTCATGGATAAGCTGATGAGGCACACTGATAAATGCTAACCTAAAGTTTTAGGTCTCCAAAGCTTTGTTAGTTTCACCATCATGAAGACTTGTCAAACATTTCCGTCTAGACGAATAATTTGTTCTGACCAGTGACCAATATCAAGTCCCATTAGAAGTGGTCTTACAAATATCACGGATAGACATTTGTCTCTTCCCATTTTCTTTTAGTACTATCTGGTACAAACCAGATTCTTCTTCTTCCTCTTTATCTCTCTCTTGGCTGTTGGAAGGCTGGTGTCTAGGACCAAAATAATCTGCATTTTTCTTGCAATTCCATTCATTCTAATGTAGTTTCTGGTTATGTCTTCTTGATAAACGACACTATCTGTCTATTACAGTGAATTTGTCTTTCTGCAGGTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTTTTCTTGGGATTCACTAGCACC</genome_strand>
        <mrna_strand>AGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAG.................................................................................................................ATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACAANGGNTTTCTTGGGATTCACTAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712127" ref_strand="+" ref_description="SGN-E712127 [FB03DH09]">
      <seq>cgcgttaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacctggtttgtcgtttcgcttttgtgaaagacaaataagagcataccttgatcggaatattagctatgggtcctgagggtcttttttctctgtcaagaggtgacctcgagaatcaatctatggaaaatttgtagtactggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28636" stop="25298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28342" g_stop="28298" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="154" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="232" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="266" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="335" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25598" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="787" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E712127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28342" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGGAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGAC</genome_strand>
        <mrna_strand>CGCGTTAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351745" ref_strand="+" ref_description="SGN-E351745 [cTOS-8-P19]">
      <seq>cccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacctggtttgtcgtttcgcttttgtgaaagacaaataagagcataccttgatcggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26901" stop="25383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26601" g_stop="26557" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26049" g_stop="25678" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="417" r_length="372" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E351745" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26601" e_stop="26557"/>
          <exon e_start="26049" e_stop="25678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGC</genome_strand>
        <mrna_strand>CCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238700" ref_strand="+" ref_description="SGN-E238700 [cLEL-9-I8](-)">
      <seq>aaaatgctaactgaccctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacctggtttgtcgtttcgcttttgtgaaagacaaataagagcataccttgatcggaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26313" stop="25383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26013" g_stop="25686" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="350"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E238700" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26013" e_stop="25686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCTAACTGA-CCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGA</genome_strand>
        <mrna_strand>AAAATGCTAACTGACCCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239061" ref_strand="+" ref_description="SGN-E239061 [cLEL-9-I8](-)">
      <seq>ttccctaataaaaaaattcgagtagtcctattatagtgcttgtcttgatataccgcagcagtctctgcttccgaccctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgtttacaactttctctgttgattgaagaagaaaactctctctgaacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcgcgggctcaatcattgtaatgacatacctggtttgtcggttcgcttttgtgaaagacaaataagagcataccttgttcggtaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26296" stop="25383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25996" g_stop="25692" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="332"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E239061" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25996" e_stop="25692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTG</genome_strand>
        <mrna_strand>TTCCCTAATAAAAAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGATATACCGCAGCAGTCTCTGCTTCCGACCCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTTACAACTTTCTCTGTTGATTGAAGAAGAAAACTCTCTCTGAACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCGCGGGCTCAATCATTGTAATGACATACCTGGTTTGTCGGTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334754" ref_strand="+" ref_description="SGN-E334754 [cTOE-3-E24]">
      <seq>agaagaaaacgcccgccgagctcaaaattggcgacgagtttttgaaggccaaatgtctaatgaacctgtgaagtcgcattgattcttgaacacaagtatgagccagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagcctggttgtaaccaccaatcctttggtgcacgggcttaatcattgtaatgacatacctggttttgtcgtttcgctttttgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28632" stop="25413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28332" g_stop="28298" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="147" r_length="111" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="225" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="259" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="328" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25713" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="669" r_length="341" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E334754" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28332" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAACG-CCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAA-CTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAG-CAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAG-CTGGTTGTAACCA-CAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGG-TTTGTCGTTTCGC-TTTTGTGAAA</genome_strand>
        <mrna_strand>AGAAGAAAACGCCCGCCGAGCTCAAAATTGGCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACCTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCCTGGTTGTAACCACCAATCCTTTGGTGCACGGGCTTAATCATTGTAATGACATACCTGGTTTTGTCGTTTCGCTTTTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273560" ref_strand="+" ref_description="SGN-E273560 [cLEN-6-N7]">
      <seq>agaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacctggtttgtcgtttcgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28629" stop="25420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28329" g_stop="28298" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="141" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="219" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="253" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="322" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25720" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="652" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E273560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28329" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTT</genome_strand>
        <mrna_strand>AGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304416" ref_strand="+" ref_description="SGN-E304416 [cLEX-12-I17]">
      <seq>gaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgagggccagatgtctaatgaactgtgaagtctcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgactaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtagattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28637" stop="25490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28337" g_stop="28298" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="149" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="227" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="261" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="330" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25790" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="590" r_length="260" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E304416" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28337" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGG</genome_strand>
        <mrna_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAGGGCCAGATGTCTAATGAACTGTGAAGTCTCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACTAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTAGATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263891" ref_strand="+" ref_description="SGN-E263891 [cLEG-73-H14]">
      <seq>gaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgtaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaaccgttgaaggaaggtattgccatggtcccatccatcaaaaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctantatagtgcttgtcttgcatggctgcagcagtctctgcttccgaacctgacctccntatgtttattagtagcagctctgtaatgctanttgggctctggcattatggttgaaactttatctgttggattgaaagaagaaaactctctctggacccttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28637" stop="25505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28337" g_stop="28298" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="149" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="228" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="262" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="332" r_length="70" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25804" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="579" r_length="247" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E263891" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28337" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTG-AAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTG-AGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTT-GATTG-AAGAAGAAAACTCTCTCTGGACCCTTTTTTTTC</genome_strand>
        <mrna_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGTAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACCGTTGAAGGAAGGTATTGCCATGGTCCCATCCATCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTANTATAGTGCTTGTCTTGCATGGCTGCAGCAGTCTCTGCTTCCGAACCTG-ACCTCCNTATGTTTATTAGTAGCAGCTCTGTAATGCTANTTGGGCTCTGGCATTATGGTTGAAACTTTATCTGTTGGATTGAAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311438" ref_strand="+" ref_description="SGN-E311438 [cLEZ-18-C8]">
      <seq>acttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26934" stop="25527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26741" g_stop="26726" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="85" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26049" g_stop="25828" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="307" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E311438" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26741" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAA</genome_strand>
        <mrna_strand>ACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297508" ref_strand="+" ref_description="SGN-E297508 [cLET-28-O8]">
      <seq>gaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28637" stop="25548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28337" g_stop="28298" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="149" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="227" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="261" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="330" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25848" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="532" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E297508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28337" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTA</genome_strand>
        <mrna_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250946" ref_strand="+" ref_description="SGN-E250946 [cLEG-13-D23]">
      <seq>aaaacgccgctgttctcaaaattggcgatgagttttttaaggccaaatgtctaatgaactgtgaagtggcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagttgctggaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28627" stop="25607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28327" g_stop="28298" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="139" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="217" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="251" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="320" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25907" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="463" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E250946" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28327" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATAT</genome_strand>
        <mrna_strand>AAAACGCCGCTGTTCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTTAAGGCCAAATGTCTAATGAACTGTGAAGTGGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTTGCTGGAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284761" ref_strand="+" ref_description="SGN-E284761 [cLES-3-I16]">
      <seq>cgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagagattcgagtagtcctattatagagcttgtcttgctatgctgcagcagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28623" stop="25632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28323" g_stop="28298" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="135" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="213" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="247" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="316" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25932" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="434" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E284761" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28323" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTC</genome_strand>
        <mrna_strand>CGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAGATTCGAGTAGTCCTATTATAGAGCTTGTCTTGCTATGCTGCAGCAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311974" ref_strand="+" ref_description="SGN-E311974 [cTOA-16-N14]">
      <seq>tgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaatgaagaaattcgagtagtcctattatagtgcttgtcttgctatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28617" stop="25642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28317" g_stop="28298" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="129" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="207" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="241" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="310" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25942" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="418" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E311974" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28317" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTG</genome_strand>
        <mrna_strand>TGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATGAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312552" ref_strand="+" ref_description="SGN-E312552 [cLEZ-20-P12]">
      <seq>aagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgcccccaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28633" stop="25643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28333" g_stop="28298" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="145" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="223" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="257" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="326" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25943" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="433" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E312552" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28333" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCT</genome_strand>
        <mrna_strand>AAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCCAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311423" ref_strand="+" ref_description="SGN-E311423 [cLEZ-18-K11]">
      <seq>aagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28633" stop="25698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28333" g_stop="28298" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="145" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26871" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="223" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26759" g_stop="26726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="257" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26625" g_stop="26557" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="326" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26049" g_stop="25998" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="378" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E311423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28333" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26871"/>
          <exon e_start="26759" e_stop="26726"/>
          <exon e_start="26625" e_stop="26557"/>
          <exon e_start="26049" e_stop="25998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACC</genome_strand>
        <mrna_strand>AAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240158" ref_strand="+" ref_description="SGN-E240158 [cLED-25-E5]">
      <seq>gaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagagtatcctcctgcctgtggcttagattgaaaaacttctgtatttctttttgatatttatgaatttacaatgaatagtccttttatagaatgtaaaccttaactttgattcagaattcttagtaggtatccacttgctgaattcgaggtaggaatctgttctttgaatttcctaatttgtttcatacttgtaaccaccatcaatatcttcgtggaaactgcagtttataagtttgaatattttgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28634" stop="26325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28334" g_stop="28298" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="146" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26625" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="470" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E240158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28334" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGC</genome_strand>
        <mrna_strand>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241311" ref_strand="+" ref_description="SGN-E241311 [cLED-26-J20]">
      <seq>gaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagagtatcctcctgcctgtggcttagattgaaaaacttctgtatttctttttgatatttatgaatttacaatgaatagtccttttatagaatgtaaaccttaactttgattcagaattcttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28634" stop="26450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28334" g_stop="28298" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27361" g_stop="27253" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="146" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26948" g_stop="26750" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="345" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E241311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28334" e_stop="28298"/>
          <exon e_start="27361" e_stop="27253"/>
          <exon e_start="26948" e_stop="26750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGT</genome_strand>
        <mrna_strand>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398508" ref_strand="+" ref_description="SGN-E398508 [TUS-18-E3]">
      <seq>ttaaaagtcttcttcttcctctttgttcttccactattttcatttctgtggtttacctttcaaaacccaaaattctcctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcggcatttgtggaaggtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggttgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcagcttgaaagaccctaacagccaggagttgttggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28535" stop="31464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28835" g_stop="28960" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28961" i_stop="29671" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29672" g_stop="29803" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="258" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29804" i_stop="29881" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29882" g_stop="29928" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="305" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29929" i_stop="30987" i_length="1059">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30988" g_stop="31050" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="368" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31051" i_stop="31145" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31146" g_stop="31164" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="387" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E398508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28835" e_stop="28960"/>
          <exon e_start="29672" e_stop="29803"/>
          <exon e_start="29882" e_stop="29928"/>
          <exon e_start="30988" e_stop="31050"/>
          <exon e_start="31146" e_stop="31164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGTCTTCTTCTTCCTCTTTGTTCTTCCACTATTTTCATTTCTGTGGTTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCA</genome_strand>
        <mrna_strand>TTAAAAGTCTTCTTCTTCCTCTTTGTTCTTCCACTATTTTCATTTCTGTGGTTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210064" ref_strand="+" ref_description="SGN-E210064 [cLEC-40-A4]">
      <seq>tcatttctgtgggttacctttcaaaacccaaaattctcctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcggcatttgtggaaggtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggttgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcagcttgaaagaccctaacagccaggagttgttggatgcagtaaagcacgagcgtaacatcaggatgaatcctcctagaaacaccacaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28574" stop="31517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28874" g_stop="28960" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28961" i_stop="29671" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29672" g_stop="29803" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="219" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29804" i_stop="29881" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29882" g_stop="29928" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="266" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29929" i_stop="30987" i_length="1059">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30988" g_stop="31050" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="329" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31051" i_stop="31145" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31146" g_stop="31217" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="401" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E210064" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28874" e_stop="28960"/>
          <exon e_start="29672" e_stop="29803"/>
          <exon e_start="29882" e_stop="29928"/>
          <exon e_start="30988" e_stop="31050"/>
          <exon e_start="31146" e_stop="31217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCTGTGGTTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTT</genome_strand>
        <mrna_strand>TCATTTCTGTGGGTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAAAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273000" ref_strand="+" ref_description="SGN-E273000 [cLEM-25-D11]">
      <seq>tttcaaaacccaaaattctcctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcggcatttgtggaaggtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggttgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcagcttgaaagaccctaacagccaggagttgttggatgcagtagagcacgagcgtaacatcaggatgaatcctcctagaaacaccacaatctttcaccatccaactttaggagattttgaactgcagcatttaccgtcaagtgcaacagattctgagcttgaagagcgtatcattcagcacttagctgctgccgctgccatgggaaggacacgccaccttgccagaagggaaggtccgcgaggtaggtcatcagctcaaggccgtccccaatttctggtgttttcaactcatccaaatgctcctcctcttgctggtgcttcatcttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28592" stop="31848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28892" g_stop="28960" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28961" i_stop="29671" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29672" g_stop="29803" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="201" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29804" i_stop="29881" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29882" g_stop="29928" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="248" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29929" i_stop="30987" i_length="1059">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30988" g_stop="31050" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="311" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31051" i_stop="31145" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31146" g_stop="31254" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="420" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31255" i_stop="31348" i_length="94">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31349" g_stop="31548" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="620" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E273000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28892" e_stop="28960"/>
          <exon e_start="29672" e_stop="29803"/>
          <exon e_start="29882" e_stop="29928"/>
          <exon e_start="30988" e_stop="31050"/>
          <exon e_start="31146" e_stop="31254"/>
          <exon e_start="31349" e_stop="31548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCATGTTAGCATTTTTTAAGTTCACACAATTTTCTTCTTTCTATGAACTGTTTATGGTCCATTTTGTGACAAAATCTTGGGGCACATTCCTTTTACAGTTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTAC</genome_strand>
        <mrna_strand>TTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT..............................................................................................TTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730536" ref_strand="+" ref_description="SGN-E730536 [LA24BG03]">
      <seq>ccaatacccaaaattctcctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcggcatttgtggaaggtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggttgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcagcttgaaagaccctaacagccaggagttgttggatgcagtagagcacgagcgtaacatcaggatgaatcctcctagaaacaccacaatctttcaccatccaactttaggagattttgaactgcagcatttaccgtcaagtgcaacagattctgagcttgaagagcgtatcattcagcacttagctgctgccgctgccatgggaaggacacgccaccttgccagaagggaaggtccgcgaggtaggtcatcagctcaaggccgtccccaatttctggtgttttcaactcatccaaatgctcctcctcttgctggtgcttcatcttctactcagaggagtgggggtgaacccactcctgaagacttggtatctggtcaggattctgcaattgtttctggacagccagttactcaaccatcctcttttcaagctgatcaggttcctgcctctgggtcaagatcaaatgctgctgttaatcagcctgggacttccttaatcaataggaatcctcctcaagcttcttctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28595" stop="32456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28894" g_stop="28960" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28961" i_stop="29671" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29672" g_stop="29803" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="199" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29804" i_stop="29881" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29882" g_stop="29928" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="246" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29929" i_stop="30987" i_length="1059">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30988" g_stop="31050" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="309" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31051" i_stop="31145" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31146" g_stop="31254" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="418" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31255" i_stop="31348" i_length="94">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31349" g_stop="31722" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="792" r_length="374" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31723" i_stop="32130" i_length="408">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32131" g_stop="32156" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="818" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E730536" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28894" e_stop="28960"/>
          <exon e_start="29672" e_stop="29803"/>
          <exon e_start="29882" e_stop="29928"/>
          <exon e_start="30988" e_stop="31050"/>
          <exon e_start="31146" e_stop="31254"/>
          <exon e_start="31349" e_stop="31722"/>
          <exon e_start="32131" e_stop="32156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCATGTTAGCATTTTTTAAGTTCACACAATTTTCTTCTTTCTATGAACTGTTTATGGTCCATTTTGTGACAAAATCTTGGGGCACATTCCTTTTACAGTTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCAATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCAAGCTGATCAGGTTCCTGCCTCTGGGTCAGGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAGGTATGTTTGTGTCTCAAATTTGATCAGAGTTCTGATGATTTCCTTTTTTTGTTTAGCTCCATATGAGTTACAATGTTACACTTACATATTATAGTCATGGAAGGAATCCTTCAAAAATGCAATGAGGTCACAATTACTACCACAAGAAGCCACCACCCTCGCCATTTCAAGAAAGGGGCACAGGAAGAATTCCTTCTCGTGGATTTTACCCGTTTTGATGGCTATCTCATGCGCCCTTAATTCCCATTCAACGTTTATGAAAAGTGGGGCAAACAAGATGAATCATACCATAAATGTTGAATCTTAGAAAAGAGGGGAGAGGAGAAAAGTAAAGGCCAAGGGACAAAGGAAAAGTATAGCTAATATATTCTCTTATTTTTTGCTTATTATTGAGTTATGGTATTGCAGGAATCCTCCTCAAGCTTCTTCTAGCA</genome_strand>
        <mrna_strand>CCAATACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT..............................................................................................TTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCAATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCAAGCTGATCAGGTTCCTGCCTCTGGGTCAAGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCCTCAAGCTTCTTCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555336" ref_strand="+" ref_description="SGN-E555336 [cTSC-1-M8]">
      <seq>ctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcgggatttgtggaaagtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggatgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcatcttgaaagaccctaacagccaggagttgttggatgcagtagagcacgagcgtaacatcaagatgaatcctcctagaaacaccacaatctttcaccatccaactttaggagattttgaactgcagcatttaccgtctagtgcaacatattctgagcttgaagagcgtatcattcagcacttagctgctgccgctgccatgggaaggacacgccaccttgccagaagggaaggtccgcgaggtaggtcatcagctcaaggccgtccccaatttctggtgttttcaactcatccaaatgctcctcctcttgctggtgcttcatcttctactcagaggagtgggggtgaacccactcctgaagacttggtatctggtcaggattctgctattgtttctggacagccagttactcaaccatcctcttttctggctgatcaggttcctgcctctgggtcaggatcaaatgctgctgttaatcagcctgggacttccttaatcaataggaatcctcctcaagcttcttctagcaatcaagacagagtcggaccatcagattttcagtctttttcagattctataaagtctagatttagtgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28612" stop="32527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28912" g_stop="28960" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28961" i_stop="29671" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29672" g_stop="29803" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="181" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29804" i_stop="29881" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29882" g_stop="29928" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="228" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29929" i_stop="30987" i_length="1059">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30988" g_stop="31050" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="291" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31051" i_stop="31145" i_length="95">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31146" g_stop="31254" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="400" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31255" i_stop="31348" i_length="94">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31349" g_stop="31722" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="774" r_length="374" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31723" i_stop="32130" i_length="408">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32131" g_stop="32227" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="871" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E555336" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28912" e_stop="28960"/>
          <exon e_start="29672" e_stop="29803"/>
          <exon e_start="29882" e_stop="29928"/>
          <exon e_start="30988" e_stop="31050"/>
          <exon e_start="31146" e_stop="31254"/>
          <exon e_start="31349" e_stop="31722"/>
          <exon e_start="32131" e_stop="32227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCATGTTAGCATTTTTTAAGTTCACACAATTTTCTTCTTTCTATGAACTGTTTATGGTCCATTTTGTGACAAAATCTTGGGGCACATTCCTTTTACAGTTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCAATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCAAGCTGATCAGGTTCCTGCCTCTGGGTCAGGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAGGTATGTTTGTGTCTCAAATTTGATCAGAGTTCTGATGATTTCCTTTTTTTGTTTAGCTCCATATGAGTTACAATGTTACACTTACATATTATAGTCATGGAAGGAATCCTTCAAAAATGCAATGAGGTCACAATTACTACCACAAGAAGCCACCACCCTCGCCATTTCAAGAAAGGGGCACAGGAAGAATTCCTTCTCGTGGATTTTACCCGTTTTGATGGCTATCTCATGCGCCCTTAATTCCCATTCAACGTTTATGAAAAGTGGGGCAAACAAGATGAATCATACCATAAATGTTGAATCTTAGAAAAGAGGGGAGAGGAGAAAAGTAAAGGCCAAGGGACAAAGGAAAAGTATAGCTAATATATTCTCTTATTTTTTGCTTATTATTGAGTTATGGTATTGCAGGAATCCTCCTCAAGCTTCTTCTAGCAATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATG</genome_strand>
        <mrna_strand>CTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGGATTTGTGGAAAGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGATGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCATCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAAGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT..............................................................................................TTACCGTCTAGTGCAACATATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCTATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCTGGCTGATCAGGTTCCTGCCTCTGGGTCAGGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCCTCAAGCTTCTTCTAGCAATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338466" ref_strand="+" ref_description="SGN-E338466 [cTOE-15-F13]">
      <seq>ttgaaagaccctaacagccaggagttgttggatgcagtagagcacgagcgtaacatcaggatgaatcctcctagaaacaccacaatctatcaccatccaactttaggagattttgaactgcagcatttaccgtcaagtgcaacagattctgagcttgaagagcgtatcattcagcacttagctgctgccgctggcatgggaaggacacgccaccttgccagaagggaaggtccgcgaggtaagtcatcagctcaaggccgtccccaatttctggtgtttgtaactcatccaaatgctcctccttttgctggtgcttcatcttctactcagaggagtgggggtgaacccactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30837" stop="31876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31034" g_stop="31050" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31051" i_stop="31145" i_length="95">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31146" g_stop="31254" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="126" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31255" i_stop="31348" i_length="94">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31349" g_stop="31576" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="354" r_length="228" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E338466" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31034" e_stop="31050"/>
          <exon e_start="31146" e_stop="31254"/>
          <exon e_start="31349" e_stop="31576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCATGTTAGCATTTTTTAAGTTCACACAATTTTCTTCTTTCTATGAACTGTTTATGGTCCATTTTGTGACAAAATCTTGGGGCACATTCCTTTTACAGTTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCT</genome_strand>
        <mrna_strand>TTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTATCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT..............................................................................................TTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGGCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAAGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTGTAACTCATCCAAATGCTCCTCCTTTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330195" ref_strand="-" ref_description="SGN-E330195 [cTOD-4-G11]">
      <seq>aatcaagacagagtcggaccatcagattttcagtctttttcagattctataaagtctagatttagtgcaatgtcaatgagatacaaagaatctttaacaaagagttcaaggggttggaaagagaaattattctctcgtaatagttcaacaccagaccattgtgccgaatctaggaatgaagtcagtgcagctgttgccactgtatcaaacctgatggagcatttggaaacaactgatagcagagccagttctgctgaatcaaatatatcagaggacacattacctgtcggccatgctgagcagcatgcacctgtgattgataatacccattctttgaatgaggataataggcaagccccgtgtgctgcaagttctggttcgagctaagttttgaaactcatagcactttctcttaaaggtggatactcctgtcaacatcagtaatatatgactgcattttattggatctgtggtgaacgctagtacgttgaagttcatcactgaatgtagcctgcttcaataaaataggaatatggatcccatcacttggtccaagccgtatatatgtatgaaatgatactatagatgtaaattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22585" stop="33802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32156" g_stop="32235" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32236" i_stop="32330" i_length="95">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32331" g_stop="32668" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="418" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32669" i_stop="33323" i_length="655">
            <donor d_prob="0.429" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33324" g_stop="33502" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="597" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E330195" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32156" e_stop="32235"/>
          <exon e_start="32331" e_stop="32668"/>
          <exon e_start="33324" e_stop="33502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATGTCAATGAGGTATATGGGAACTCTAATATCATTTCTTATAACACTTCAGCTGACTTCTTCAACATCAGATAATTTATTTACTTGTTTTGAACGTCATGTTTTAGATACAAAGAATCTTTAACAAAGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCTGTTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAGGTAACTTGTCTTCTTCCAAGAGTTCCTTCTTTCCTCCCTCACCCACCCCCCCCCCCCCCCAAGAAAAAAAATAAAAAAATGAAGAAAGAGATGGAGAGAGATCCAAGACAAAAGTGGAACTGTATGAGGAAAAAAGATGGTTTATCCGAGAATACTACATGCTGATGGTTTTTGTCGTCTCCAATGAGGTTGGCTCTTAAGCACCCAAGTGCTTCTGGATTTGATGGTAGGAGCTACCTATTGTATTTCAAGTGCATACTGATTAGAGAGACAGAAAAGACTTGTTGTGTCGAAGCAAGTTGATATAGTAGACCATTGAGCTCGTTGACAACCCTTAGTTGTTACGTTACCTCTGCCGCTTTTTGGAATAGCACATGACTAAAACCATATCTCTATTGTGAGATTTATATTTTCGTCAATGTGGACAGTAAGAAACCGTAGCAGTGCGGAATGATCCTTTTTGTATAAATTCCCCCACTTTCTTGTTCTTCTTCCTCCTTTTAATCCCCTCTCTCTCTCTTGGGTGCTTGGAAGAATTGTGTCTAGGCCCAAGATTTTCTGCACTTCTCCTGCCTTGTATTGTAATTTCTCGTTATCTTCTTCTTTTCGTCAATGCAGTTATCTATTCATTACAATAAATTCCTTCCTCCTGCAGGTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTC</genome_strand>
        <mrna_strand>AATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATGTCAATGAG...............................................................................................ATACAAAGAATCTTTAACAAAGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCTGTTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395861" ref_strand="+" ref_description="SGN-E395861 [TUS-18-E3](-)">
      <seq>agagttcaaggggttggaaagagaaattattctctcgtaatagttcaacaccagaccattgtgccgaatctaggaatgaagtcagtgcagcccctgccactgtatcaaacctgatggagcatttggaaacaactgatagcagagccagttctgctgaatcaaatatatcagaggacacattacctgtcggccatgctgagcagcatgcacctgtgattgataatacccattctttgaatgaggataataggcaagccccgtgtgctgcaagttctggttcgagctaagttttgaaactcatagcactttctcttaaaggtggatactcctgtcaacatcagtaatatatgactgcattttattggatctgtggtgaacgctagtacgttgaagttcatcactgaatgtagcctgcttcaataaaataggaatatggatcccatcacttggtccaagccgtatatatgtatgaaatgatactatagatgtaaattgtcctgttctggatagtactgattaaatataactgtttccttgaaattttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32051" stop="33856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32351" g_stop="32668" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32669" i_stop="33323" i_length="655">
            <donor d_prob="0.429" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33324" g_stop="33550" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="545" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="560"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E395861" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32351" e_stop="32668"/>
          <exon e_start="33324" e_stop="33550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCTGTTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAGGTAACTTGTCTTCTTCCAAGAGTTCCTTCTTTCCTCCCTCACCCACCCCCCCCCCCCCCCAAGAAAAAAAATAAAAAAATGAAGAAAGAGATGGAGAGAGATCCAAGACAAAAGTGGAACTGTATGAGGAAAAAAGATGGTTTATCCGAGAATACTACATGCTGATGGTTTTTGTCGTCTCCAATGAGGTTGGCTCTTAAGCACCCAAGTGCTTCTGGATTTGATGGTAGGAGCTACCTATTGTATTTCAAGTGCATACTGATTAGAGAGACAGAAAAGACTTGTTGTGTCGAAGCAAGTTGATATAGTAGACCATTGAGCTCGTTGACAACCCTTAGTTGTTACGTTACCTCTGCCGCTTTTTGGAATAGCACATGACTAAAACCATATCTCTATTGTGAGATTTATATTTTCGTCAATGTGGACAGTAAGAAACCGTAGCAGTGCGGAATGATCCTTTTTGTATAAATTCCCCCACTTTCTTGTTCTTCTTCCTCCTTTTAATCCCCTCTCTCTCTCTTGGGTGCTTGGAAGAATTGTGTCTAGGCCCAAGATTTTCTGCACTTCTCCTGCCTTGTATTGTAATTTCTCGTTATCTTCTTCTTTTCGTCAATGCAGTTATCTATTCATTACAATAAATTCCTTCCTCCTGCAGGTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTCCTGTTCTGGATAGTACTGATTAAATATAACTGTTTCCTTGAAATTTTA</genome_strand>
        <mrna_strand>AGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCCCCTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTCCTGTTCTGGATAGTACTGATTAAATATAACTGTTTCCTTGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718953" ref_strand="+" ref_description="SGN-E718953 [FC06BC12]">
      <seq>gggcgattggcggccaatcggccgaattgagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcctactcaaaatctaagcgtctgtgcaagtgttgtctatgtttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37995" stop="33682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37694" g_stop="37483" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="241" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="33982" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="753" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E718953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37694" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="33982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAAGTGTTGTCTATGTTTGCCT</genome_strand>
        <mrna_strand>AGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAAGTGTTGTCTATGTTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351227" ref_strand="+" ref_description="SGN-E351227 [cTOS-6-M22]">
      <seq>tttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcctactcaaaatctaagcgtctgtgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38011" stop="33701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37711" g_stop="37483" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="332" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34001" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="722" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E351227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37711" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAA</genome_strand>
        <mrna_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349055" ref_strand="+" ref_description="SGN-E349055 [cTOS-2-A12]">
      <seq>aagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcctactcaaaatctaagcgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38000" stop="33706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37700" g_stop="37483" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="321" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34006" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="706" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E349055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37700" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTG</genome_strand>
        <mrna_strand>AAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722705" ref_strand="+" ref_description="SGN-E722705 [FC18AC05]">
      <seq>gggcgaatggcggccaatcggccgaattgactttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaattttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcctaaaaaaaaaaaaaaaaaaaaaaaattcccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38013" stop="33725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37711" g_stop="37483" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="260" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34025" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="729" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="730" polyA_stop="753"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E722705" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37711" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTA</genome_strand>
        <mrna_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAATTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551569" ref_strand="+" ref_description="SGN-E551569 [cTSB-1-C19]">
      <seq>agagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37901" stop="33725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37601" g_stop="37483" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="222" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34025" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="588" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E551569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37601" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTA</genome_strand>
        <mrna_strand>AGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716104" ref_strand="+" ref_description="SGN-E716104 [FB16AE08]">
      <seq>ctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37990" stop="33726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37690" g_stop="37483" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="311" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34026" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="676" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E716104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37690" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCT</genome_strand>
        <mrna_strand>CTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718411" ref_strand="+" ref_description="SGN-E718411 [FC04CC12]">
      <seq>aatcggccgaattgactttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38013" stop="33736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37711" g_stop="37483" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="245" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="348" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34037" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="702" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="756"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E718411" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37711" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTC</genome_strand>
        <mrna_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711684" ref_strand="+" ref_description="SGN-E711684 [FB02CG04]">
      <seq>cgtttaaagtcatcatcatctcagtcctttctaaggagatatcgtgaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacccgccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcaaaanaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37964" stop="33736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37672" g_stop="37483" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="292" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34037" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="646" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="691"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E711684" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37672" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTC</genome_strand>
        <mrna_strand>CGTTTA-AAGTCATCATCATCTCAGTCCTTTCTAAGGAGATATCGTGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACCCGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714173" ref_strand="+" ref_description="SGN-E714173 [FB10CH06]">
      <seq>gattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagtttgctaanngatatcgagaatcaaattatgataatgaattcttctcgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37965" stop="33738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37665" g_stop="37483" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="286" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34041" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="636" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E714173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37665" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGA</genome_strand>
        <mrna_strand>GATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715503" ref_strand="+" ref_description="SGN-E715503 [FB14BH09]">
      <seq>gacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35791" stop="33748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="111" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34390" g_stop="34048" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="454" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="472"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E715503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAA</genome_strand>
        <mrna_strand>CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311222" ref_strand="+" ref_description="SGN-E311222 [cLEZ-16-O2]">
      <seq>tgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38007" stop="33794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37707" g_stop="37483" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="328" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34094" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="625" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E311222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37707" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGT</genome_strand>
        <mrna_strand>TGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317948" ref_strand="+" ref_description="SGN-E317948 [cTOA-30-G10]">
      <seq>aaggaccacntttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatcttttcgtgctgaatcgttaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38020" stop="33796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37720" g_stop="37483" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="342" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34096" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="637" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E317948" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37720" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGACCAC-TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAAT</genome_strand>
        <mrna_strand>AAGGACCACNTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTTCGTGCTGAATCGTTAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318818" ref_strand="+" ref_description="SGN-E318818 [cTOB-11-N21]">
      <seq>ctagaaggaccactttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaagaataagaatcaatcagagtgttcaaaaggatcgactttatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38024" stop="33818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37724" g_stop="37483" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="345" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34118" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="618" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E318818" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37724" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTT</genome_strand>
        <mrna_strand>CTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAAGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711687" ref_strand="+" ref_description="SGN-E711687 [FB02CG07]">
      <seq>ccattattcatcacaccaacctaggaataattctagaaggacccctttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38055" stop="33835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37756" g_stop="37483" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="377" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34128" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="640" r_length="263" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E711687" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37756" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGA</genome_strand>
        <mrna_strand>CCATTATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCCCTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322595" ref_strand="+" ref_description="SGN-E322595 [cTOB-26-C9]">
      <seq>tcattcatcacaccaacctaggaataattctagaaggaccactttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttnaatgtcaatgaacttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38053" stop="33866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37753" g_stop="37483" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="374" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34166" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="599" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E322595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37753" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTT</genome_strand>
        <mrna_strand>TCATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTNAATGTCAATGAACTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283634" ref_strand="+" ref_description="SGN-E283634 [cLES-1-O15]">
      <seq>gtttgagaagaataagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtacgaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38009" stop="33995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37710" g_stop="37483" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35491" g_stop="35389" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34390" g_stop="34295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="427" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E283634" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37710" e_stop="37483"/>
          <exon e_start="35491" e_stop="35389"/>
          <exon e_start="34390" e_stop="34295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCA</genome_strand>
        <mrna_strand>GTTTGAGAAGAATAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTACGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747386" ref_strand="+" ref_description="SGN-E747386 [GI|47104576]">
      <seq>catctcaaaatctttcactcacaaaattcaaatacaccaactattttttttccggcaataaggccggcgggagtatttgccggagtatttcttttgttggaactgtactgtgggtttgaccctttcaaacacagtgcaatttctgaaatcaaagactttaaagcttacagagttgatccaccagcttggtctgaaatcccagttgaaaaggatacccagaacttgcttcagaaatcggaaatcaagtttttgaatcagattcagggcccggaaagtatcgcatttgacccgaaaggtcgtgggccttatacaggaatagctgatggcagaattgtgttgtgggatggagagaaatggactgatttcgcatatacgtctgctaataggtctggcctttgtgacccaaaaccatctcccctgagctatttagaaaatgaacacatctgtggtaggcctttgggattacggtttgataaaaaaacaggtgacttgtatattgcagatgcatattttgggttgatgaaagtagggcctgaagggggactagcagaaacattgactactgaggctgaaggagtgcctctcgtattcacaaatgaccttgacgttgatgatgaaggaaatgtctattttacagatagcagcaccaagtaccaaagaaggtaattgtgactttactgtttcttcgtttttatgtagatctcttgatatatttaacatgatttgagaatgaagattccatttcagttaagttctgattaatgccaaatgggagacagagggctccctatctttagcggggagaaaactggtttcttttaaaaaacaatgcatctaggacagaaaaaggagaattaatgcctaaatctgataacatatagtgaatagatgatcatcgagaagcttagattttaacgtggttacatggttgcacctaactttgctaacatttcttctgttcaattaatacccaactctgctaactatagtgaagatgtttatatcggatttgcaattccatatataagcatttatttcaggttttaatacaacatggttcaagtgtcatgcgcgtttcttctttaattagaatattactacccaccccatcttgcacaggaactatatgctgctggtttactcagcagaagatagtgggagggtcttgaagtacaattctaatactaaacaaaccactgttcttgttcggaatctccaattcccaaacggtctgtcactaagcaaggacggttccttctttgtattctgtgaagttgccaagggaagattacagaagtactggttgaaaggcgagaaagcggggacctttgaggtgatggcagtcctcccaggatatcctgataatgtcagcacaaatgagagaggtgaattttgggtagcaatccactgtcgccgtaccatttacagctatataaattccatatacccacaacttcgtctattcttgctgaagcttcctatccctgtaaagctccgcgccctcttgcacctcggaggcaagctacccgctattgttgtgaagtataaccctgaaggtaagttgttacgaatattggaagacgaagaagggaaagtagttcgagctgtaagtgatgttgaggagaaagatgggaagctatggatgggaagtgtgttgatgcctttcattgctgtttaccaactacaatgagttaaaacacttgatttttcaacaaactatctacttagttccttatggttgtttgtagcatctaatttatcagaataattcaataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39464" stop="43073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39764" g_stop="40149" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40150" i_stop="41253" i_length="1104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41254" g_stop="42154" g_length="901"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="1287" r_length="901" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42155" i_stop="42280" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42281" g_stop="42771" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1288" r_stop="1778" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1779" polyA_stop="1797"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E747386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1778</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39764" e_stop="40149"/>
          <exon e_start="41254" e_stop="42154"/>
          <exon e_start="42281" e_stop="42771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAGGTGAGTCTGTTGTTTTTCCTCTGTTTTAAATGTGTATATCTGATTTTGACTTTCGTGGAGACTAAAATACTGTTGAATCTTGTGACGTAGTATTTTTTATGTCTATTTTATGGATGCTGTAGACATGTGTTAATTTCTGTGAAAACAGTATGATACTTTAACATGCAGATGCTATTTTATTTTGATTTTAGTATAATTGTGGGTGTTTATGATTCCATTTTTTTTTTAAATTGCCCTTTTGATTCACGTCAGCTTAGTACTTGGTTTAATGACTTCTAAAGCATGATTTCATGCCTTGTTACAATGATAATCTTTGTTGCTATGCCTTTTTGATGAAAGAAGACTGTAACGGTGAGATATGCTTGCATTTCGCTCTTAATTTGTATCGTTGCTCCTAATTATTATGATTTCCACAAGCTGCTGGAATCCAAGCCTCTACGTAATTGATATTCTATAACTAAGTCACATAAAGCGCGATCTTTGTTATTGACGCTAAACTATTTAAGCACTGGAATCAGATGGGAGTCAATCTCATTCTAAGAAACTTTCTTGCTTTGGTCAATTCAGGATAGCATGAGAGCACATAAGAAAATGATCTTAAGGTTATATAAGAGAATCTGAATTTCTATAAAATGTCTTGGTTTTCTTAGCTATCTGGCTTTGAGTTGTCAGGAAAGACGAAAGGACCATAAGTTCCTGCTCCACAGAGAGAGTTAATATTTAGTCTTTTCAATCCTAATTTGACAATAGACCTGTGTCAGGGGAATGGCTATTGTTTCCTTTATCTTATCGTTTAATCTGACTTAAGTTCTATGATCCTAGTATATTCTGAACTTGTAATTATTTAACTGGAATTGTAATTGTGATATGTTAATGATTGTCGACACTGCATGCTAATATGTAAGGCTGTTAAGCTGATCTGGTTAAATCGAATTTTAACATGTCATTACTTCTCTTGCTCTTGATGAAATTATCTTCTATAATTGTGCTGCATAGTCTTCGTATAAAGTCTCAACATGCTTTTTAAATCTTCTCTTTTATGATTTAAGTTGCAGGTCTACTTTCTCCGATTTTCTAATGCATTTTGGTGATCTGAATTTTCAGGTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAGGTAATTGTGACTTTACTGTTTCTTCGTTTTTATGTAGATCTCTTGATATATTTAACATGATTTGAGAATGAAGATTCCATTTCAGTTAAGTTCTGATTAATGCCAAATGGGAGACAGAGGGCTCCCTATCTTTAGCGGGGAGAAAACTGGTTTCTTTTAAAAAACAATGCATCTAGGACAGAAAAAGGAGAATTAATGCCTAAATCTGATAACATATAGTGAATAGATGATCATCGAGAAGCTTAGATTTTAACGTGGTTACATGGTTGCACCTAACTTTGCTAACATTTCTTCTGTTCAATTAATACCCAACTCTGCTAACTATAGTGAAGATGTTTATATCGGATTTGCAATTCCATATATAAGCATTTATTTCAGGTTTTAATACAACATGGTTCAAGTGTCATGCGCGTTTCTTCTTTAATTAGAATATTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAGGTACGTTTCTCGACCTATGGATTAGCATGTTTACAGTATTAAATAGATATACAAGGATCCTGTTTCTGACTTCACCTTAAAAATTGAGGTATTAACATATAATGGAATGATGTGTTTCTCTTATAGATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</genome_strand>
        <mrna_strand>CATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAGGTAATTGTGACTTTACTGTTTCTTCGTTTTTATGTAGATCTCTTGATATATTTAACATGATTTGAGAATGAAGATTCCATTTCAGTTAAGTTCTGATTAATGCCAAATGGGAGACAGAGGGCTCCCTATCTTTAGCGGGGAGAAAACTGGTTTCTTTTAAAAAACAATGCATCTAGGACAGAAAAAGGAGAATTAATGCCTAAATCTGATAACATATAGTGAATAGATGATCATCGAGAAGCTTAGATTTTAACGTGGTTACATGGTTGCACCTAACTTTGCTAACATTTCTTCTGTTCAATTAATACCCAACTCTGCTAACTATAGTGAAGATGTTTATATCGGATTTGCAATTCCATATATAAGCATTTATTTCAGGTTTTAATACAACATGGTTCAAGTGTCATGCGCGTTTCTTCTTTAATTAGAATATTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAG..............................................................................................................................ATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370380" ref_strand="+" ref_description="SGN-E370380 [TUS-28-I19]">
      <seq>atctcaaaatctttcactcacaaaattcaaatacaccaactattttttttccggcaataaggccggcgggagtatttgccggagtatttcttttgttggaactgtactgtgggtttgaccctttcaaacacagtgcaatttctgaaatcaaagactttaaagcttacagagttgatccaccagcttggtctgaaatcccagttgaaaaggatacccagaacttgcttcagaaatcggaaatcaagtttttgaatcagattcagggcccggaaagtatcgcatttgacccgaaaggtcgtgggccttatacaggaatagctgatggcagaattgtgttgtgggatggagagaaatggactgatttcgcatatacgtctgctaataggtctggcctttgtgacccaaaaccatctcccctgagctatttagaaaatgaacacatctgtggtaggcctttgggattacggtttgataaaaaaacaggtgacttgtatattgcagatgcatattttgggttgatgaaagtagggcctgaagggggactagcagaaacattgactactgaggctgaaggagtgcctctcgtattcacaaatgaccttgacgttgatgatgaaggaaatgtctattttacagatagcagcaccaagtaccaaagaaagtaattgtgactttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39465" stop="41846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39765" g_stop="40149" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40150" i_stop="41253" i_length="1104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41254" g_stop="41546" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="678" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E370380" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39765" e_stop="40149"/>
          <exon e_start="41254" e_stop="41546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAGGTGAGTCTGTTGTTTTTCCTCTGTTTTAAATGTGTATATCTGATTTTGACTTTCGTGGAGACTAAAATACTGTTGAATCTTGTGACGTAGTATTTTTTATGTCTATTTTATGGATGCTGTAGACATGTGTTAATTTCTGTGAAAACAGTATGATACTTTAACATGCAGATGCTATTTTATTTTGATTTTAGTATAATTGTGGGTGTTTATGATTCCATTTTTTTTTTAAATTGCCCTTTTGATTCACGTCAGCTTAGTACTTGGTTTAATGACTTCTAAAGCATGATTTCATGCCTTGTTACAATGATAATCTTTGTTGCTATGCCTTTTTGATGAAAGAAGACTGTAACGGTGAGATATGCTTGCATTTCGCTCTTAATTTGTATCGTTGCTCCTAATTATTATGATTTCCACAAGCTGCTGGAATCCAAGCCTCTACGTAATTGATATTCTATAACTAAGTCACATAAAGCGCGATCTTTGTTATTGACGCTAAACTATTTAAGCACTGGAATCAGATGGGAGTCAATCTCATTCTAAGAAACTTTCTTGCTTTGGTCAATTCAGGATAGCATGAGAGCACATAAGAAAATGATCTTAAGGTTATATAAGAGAATCTGAATTTCTATAAAATGTCTTGGTTTTCTTAGCTATCTGGCTTTGAGTTGTCAGGAAAGACGAAAGGACCATAAGTTCCTGCTCCACAGAGAGAGTTAATATTTAGTCTTTTCAATCCTAATTTGACAATAGACCTGTGTCAGGGGAATGGCTATTGTTTCCTTTATCTTATCGTTTAATCTGACTTAAGTTCTATGATCCTAGTATATTCTGAACTTGTAATTATTTAACTGGAATTGTAATTGTGATATGTTAATGATTGTCGACACTGCATGCTAATATGTAAGGCTGTTAAGCTGATCTGGTTAAATCGAATTTTAACATGTCATTACTTCTCTTGCTCTTGATGAAATTATCTTCTATAATTGTGCTGCATAGTCTTCGTATAAAGTCTCAACATGCTTTTTAAATCTTCTCTTTTATGATTTAAGTTGCAGGTCTACTTTCTCCGATTTTCTAATGCATTTTGGTGATCTGAATTTTCAGGTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAGGTAATTGTGACTTTACT</genome_strand>
        <mrna_strand>ATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAAGTAATTGTGACTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270777" ref_strand="+" ref_description="SGN-E270777 [cLEM-6-P4]">
      <seq>atctcaaaatctttcactcacaaaattcaaatacaccaactattttttttccggcaataaggccggcgggagtatttgccggagtatttcttttgttggaactgtactgtgggtttgaccctttcaaacacagtgcaatttctgaaatcaaagactttaaagcttacagagttgatccaccagcttggtctgaaatcccagttgaaaaggatacccagaacttgcttcagaaatcggaaatcaagtttttgaatcagattcagggcccggaaagtatcgcatttgacccgaaaggtcgtgggccttatacaggaatagctgatggcagaattgtgttgtgggatggagagaaatggactgatttcgcatatacgtctgctaataggtctggcctttgtgacccaaaaccatctcccctgagctatttagaaaatgaacacatctgtggtaggcctttgggattacggtttgataaaaaaacaggtgacttgtatattgcagatgcatattttgggttgatgaaagtagggcctgaagggggactagcanaaacattgactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39465" stop="41731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39765" g_stop="40149" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40150" i_stop="41253" i_length="1104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41254" g_stop="41431" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="563" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E270777" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39765" e_stop="40149"/>
          <exon e_start="41254" e_stop="41431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAGGTGAGTCTGTTGTTTTTCCTCTGTTTTAAATGTGTATATCTGATTTTGACTTTCGTGGAGACTAAAATACTGTTGAATCTTGTGACGTAGTATTTTTTATGTCTATTTTATGGATGCTGTAGACATGTGTTAATTTCTGTGAAAACAGTATGATACTTTAACATGCAGATGCTATTTTATTTTGATTTTAGTATAATTGTGGGTGTTTATGATTCCATTTTTTTTTTAAATTGCCCTTTTGATTCACGTCAGCTTAGTACTTGGTTTAATGACTTCTAAAGCATGATTTCATGCCTTGTTACAATGATAATCTTTGTTGCTATGCCTTTTTGATGAAAGAAGACTGTAACGGTGAGATATGCTTGCATTTCGCTCTTAATTTGTATCGTTGCTCCTAATTATTATGATTTCCACAAGCTGCTGGAATCCAAGCCTCTACGTAATTGATATTCTATAACTAAGTCACATAAAGCGCGATCTTTGTTATTGACGCTAAACTATTTAAGCACTGGAATCAGATGGGAGTCAATCTCATTCTAAGAAACTTTCTTGCTTTGGTCAATTCAGGATAGCATGAGAGCACATAAGAAAATGATCTTAAGGTTATATAAGAGAATCTGAATTTCTATAAAATGTCTTGGTTTTCTTAGCTATCTGGCTTTGAGTTGTCAGGAAAGACGAAAGGACCATAAGTTCCTGCTCCACAGAGAGAGTTAATATTTAGTCTTTTCAATCCTAATTTGACAATAGACCTGTGTCAGGGGAATGGCTATTGTTTCCTTTATCTTATCGTTTAATCTGACTTAAGTTCTATGATCCTAGTATATTCTGAACTTGTAATTATTTAACTGGAATTGTAATTGTGATATGTTAATGATTGTCGACACTGCATGCTAATATGTAAGGCTGTTAAGCTGATCTGGTTAAATCGAATTTTAACATGTCATTACTTCTCTTGCTCTTGATGAAATTATCTTCTATAATTGTGCTGCATAGTCTTCGTATAAAGTCTCAACATGCTTTTTAAATCTTCTCTTTTATGATTTAAGTTGCAGGTCTACTTTCTCCGATTTTCTAATGCATTTTGGTGATCTGAATTTTCAGGTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACT</genome_strand>
        <mrna_strand>ATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCANAAACATTGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370379" ref_strand="+" ref_description="SGN-E370379 [TUS-28-I19](-)">
      <seq>ttactacccaccccatcttgcacaggaactatatgctgctggtttactcagcagaagatagtgggagggtcttgaagtacaattctaatactaaacaaaccactgttcttgttcggaatctccaattcccaaacggtctgtcactaagcaaggacggttccttctttgtattctgtgaagttgccaagggaagattacagaagtactggttgaaaggcgagaaagcggggacctttgaggtgatggcagtcctcccaggatatcctgataatgtcagcacaaatgagagaggtgaattttgggtagcaatccactgtcgccgtaccatttacagctatataaattccatatacccacaacttcgtctattcttgctgaagcttcctatccctgtaaagctccgcgccctcttgcacctcggaggcaagctacccgctattgttgtgaagtataaccctgaaggtaagttgttacgaatattggaagacgaagaagggaaagtagttcgagctgtaagtgatgttgaggagaaagatgggaagctatggatgggaagtgtgttgatgcctttcattgctgtttaccaactacaatgagttaaaacacttgatttttcaacaaactatctacttagttccttatggttgtttgtagcatctaatttatcagaataattcaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41662" stop="43073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41962" g_stop="42154" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42155" i_stop="42280" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42281" g_stop="42771" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="684" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="696"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E370379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41962" e_stop="42154"/>
          <exon e_start="42281" e_stop="42771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAGGTACGTTTCTCGACCTATGGATTAGCATGTTTACAGTATTAAATAGATATACAAGGATCCTGTTTCTGACTTCACCTTAAAAATTGAGGTATTAACATATAATGGAATGATGTGTTTCTCTTATAGATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</genome_strand>
        <mrna_strand>TTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAG..............................................................................................................................ATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18](-)">
      <seq>aaatatattctctctcatatttatcttttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatcttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtatttataggattttttagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46518" stop="47690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46817" g_stop="47406" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46817" e_stop="47406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTTCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAAAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAGTTTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGA--------T-AAATGAGGAAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATATAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGGCGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</genome_strand>
        <mrna_strand>AAATATATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAG-GATTTTTTAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46543" stop="47687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46843" g_stop="47387" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46843" e_stop="47387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAATTGTTAATTCTCTCTTCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAAAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAGTTTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGA--------T-AAATGAGGAAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATATAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGGCGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</genome_strand>
        <mrna_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="-" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>aaaaaaaaaaaaacctctgtttctattttgtataaagcgagagaaaattgtatatacacatgtaaaaatatatatcttcgtgttatacacttaattatacaaattacaaacattttacttcaaatattgcagagaaaaaggccaacgaattatacaattgtgaattatataattgcagtgaaatacaattttctctaactttatacaacagaagtgtatatattgtgtttttgtttttgtataaagcgagacaaaaacatatatattcttgccatacacttataattatgcaatatacatacatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51424" stop="52355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51730" g_stop="51848" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51849" i_stop="51878" i_length="30">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.728" a_score="0.92"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51879" g_stop="52055" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="308" r_length="176" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51730" e_stop="51848"/>
          <exon e_start="51879" e_stop="52055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTCTATTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAACATATATCTTCGTGTTATACACTTAATTATACAATTTATAAACATTTTACTTCAATTCAATTGTAGATAAATGCAAATTTTATACAAATATCACAGAGAAAAAGGCCAATGAATTATACAATTGCGAATTATACAAATTGCAGTGAAATACAATTTTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTCTATTTTTGTATAAAGCGAGAGAAAAGCATATATCTTGTTGCTATACACTTATAATTATGCAATATACATGCATTTTA</genome_strand>
        <mrna_strand>TCTGTTTCTATTTTGTATAAAGCGAGAGAAAATTGTATATACACATGTAAAAATATATATCTTCGTGTTATACACTTAATTATACAAATTACAAACATTTTACTTCAAAT--ATTGCAG..............................AGAAAAAGGCCAACGAATTATACAATTGTGAATTATA-TAATTGCAGTGAAATACAATTTTCTCTAACTTTATACAACAGAAGTGTATATATTGTGTTTTTGTTTTTGTATAAAGCGAGACAAAAACATATATATTCTTGCCATACACTTATAATTATGCAATATACATACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52355" stop="51602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52055" g_stop="51902" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52055" e_stop="51902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGCATGTATATTGCATAATTATAAGTGTATAGCAACAAGATATATGCTTTTCTCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAA-TTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55500" stop="56522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55800" g_stop="56217" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55800" e_stop="56217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACTACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGCCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCATCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACAAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTAGATTTTTGACTCCGAATTTCTCTCTTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263785" ref_strand="+" ref_description="SGN-E263785 [cLEG-60-H14]">
      <seq>taccccaccccaccccgaccagaccaaaccattccaatcccatcaatctcttcatctctaatatgtgtttattttgtactctttcattcattcatctctcaaaaacttataccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaagagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgcccaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaacnaaccaataattggatcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61073" stop="67445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61373" g_stop="61738" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="486" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="619" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="668" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="744" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67145" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="816" r_length="72" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E263785" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61373" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGC</genome_strand>
        <mrna_strand>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAAGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCCAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAAC-AACNAACCAAT-AATTGGATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257171" ref_strand="+" ref_description="SGN-E257171 [cLEG-46-H11]">
      <seq>taccccaccccaccccgaccagaccaaaccattccaatcccatcaatctcttcatctctaatatgtgtttattttgtactctttcattcattcatctctcaaaaacttataccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcacctttccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaagttatggatcatcatcctcttctacaaattctttcacagattttctcccattctactgatcatgatcaacctagatnccctcctattcgcgtaccggagaaaagaaacgtgntccttctgcctacatagatttatcagggagagatccaaggataaaggcagcaatcctgatattagccacagagagcatttagcactgctgccaaaattgggcacatttccctcatatcattttggactcaagctggatggcaacnaacaaaccataattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61073" stop="67438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61373" g_stop="61738" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="486" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.881" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="617" r_length="131" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="664" r_length="47" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="735" r_length="71" r_score="0.934"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67138" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="799" r_length="64" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E257171" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61373" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGG</genome_strand>
        <mrna_strand>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTTCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAAGTTATGGATCATCATCCTCTTCTACAAATTC-TTTCACAGATTTTCTCCCATT-CTACTGATCATGATCAACCTAGATNCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGA-AACGTGNTCCTTCTGCCTAC-ATAGATTTATCAG...................................................................................................................GGA-GAGATCC-AAGGATAAAGGC-AGCAATCCTGATATTAGCCACAGAG-AGCATTTAGCACTGCTGCC-AAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATAT-CATTTTGGACTCAAGCTGGATGGCAACNAACAAACC-AT-AATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269404" ref_strand="+" ref_description="SGN-E269404 [cLEM-2-E9]">
      <seq>aaaaacttataccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61173" stop="66603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61473" g_stop="61738" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="386" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="519" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66303" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="564" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E269404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61473" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTA</genome_strand>
        <mrna_strand>AAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702763" ref_strand="+" ref_description="SGN-E702763 [FA19CE07]">
      <seq>gcttattctttatttatcatctccccgcttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagcagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgacccacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttaacactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaagagaaggtcctcaaaaaacaattggtctctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61178" stop="67487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61477" g_stop="61738" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="383" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64541" i_length="420">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.171" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64542" g_stop="64677" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="519" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="568" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="644" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67187" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="760" r_length="116" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E702763" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61477" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64542" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATACCTTATTTATCATCTCCCC-CTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTA</genome_strand>
        <mrna_strand>GCTTATTCTTTATTTATCATCTCCCCGCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGACCCACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAACACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAAGAGAAGGTCCTCAAAAAACAATTGGTCTCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270979" ref_strand="+" ref_description="SGN-E270979 [cLEM-22-I5]">
      <seq>ttataccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61179" stop="66616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61479" g_stop="61738" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="380" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="513" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="562" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66431" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="571" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E270979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61479" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGAT</genome_strand>
        <mrna_strand>TTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241501" ref_strand="+" ref_description="SGN-E241501 [cLED-28-J17]">
      <seq>taccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61182" stop="66605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61482" g_stop="61738" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="377" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="510" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66305" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="557" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E241501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61482" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATC</genome_strand>
        <mrna_strand>TACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703832" ref_strand="+" ref_description="SGN-E703832 [FA22CD05]">
      <seq>cttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagaggggcctcagaaaaacaattggtctctattaattataaataaaataataaaatatatgatctagctatattatgatccccaatatatataaaatataatattatattaggggagatggattatatatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61185" stop="67586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61485" g_stop="61738" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="374" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="507" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="556" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="632" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67286" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="850" r_length="218" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E703832" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61485" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAG-AAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATAT-AAATATAATATTATA-TAGGTGAGATGTATTATATATATTAT</genome_strand>
        <mrna_strand>CTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGGCCTCAGAAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAAATATATGATCTAGCTATATTATGATCCCCAATATATATAAAATATAATATTATATTAGGGGAGATGGATTATATATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246343" ref_strand="+" ref_description="SGN-E246343 [cLEF-40-J24]">
      <seq>cttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61185" stop="66606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61485" g_stop="61738" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="374" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="507" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66306" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="555" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E246343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61485" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCA</genome_strand>
        <mrna_strand>CTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272028" ref_strand="+" ref_description="SGN-E272028 [cLEM-8-H23]">
      <seq>tttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61189" stop="64399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61489" g_stop="61738" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="348" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E272028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61489" e_stop="61738"/>
          <exon e_start="64002" e_stop="64099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTC</genome_strand>
        <mrna_strand>TTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700999" ref_strand="+" ref_description="SGN-E700999 [FA14DA06]">
      <seq>ttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcaatatccctttagggccttggattccttgttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61190" stop="67666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61490" g_stop="61738" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="502" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="551" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="627" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67366" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="922" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E700999" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61490" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTA</genome_strand>
        <mrna_strand>TTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCAATATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276473" ref_strand="+" ref_description="SGN-E276473 [cLEN-17-J14]">
      <seq>tatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61191" stop="66593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61491" g_stop="61738" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="368" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="501" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66293" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="536" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E276473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61491" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTAC</genome_strand>
        <mrna_strand>TATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276549" ref_strand="+" ref_description="SGN-E276549 [cLEN-17-K12]">
      <seq>tatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61191" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61491" g_stop="61738" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="368" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64650" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="474" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E276549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61491" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</genome_strand>
        <mrna_strand>TATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392346" ref_strand="+" ref_description="SGN-E392346 [TUS-35-B18]">
      <seq>atctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattacccacagagaaacatttagcactgctgccaaaaattgggcacatttccctcatatcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61195" stop="67397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61495" g_stop="61738" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="364" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="497" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="546" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="622" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67097" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="648" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E392346" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61495" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTT</genome_strand>
        <mrna_strand>ATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTACCCACAGAGAAACATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201346" ref_strand="+" ref_description="SGN-E201346 [cLEC-4-G4]">
      <seq>tctccccattttttaccctatcttttgtaagctaggtcttttcaactgtgttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatatcacttctcttccttggaacgtgtttgctatgtccattgcaacttctgcagcacaattcttgcggttagcgttccatgctacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtcaaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatccccttctattcgcgtaccggagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61196" stop="64980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61496" g_stop="61738" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="363" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="496" r_length="133" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E201346" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61496" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TCTCCCCATTTTTTACCCTATCTTTTGTAAGCTAGGTCTTTTCAACTGTGTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATCACTTCTCTTCCTTGGAACGTGTTTGCTATGTCCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCTACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTCAAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTTCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244348" ref_strand="+" ref_description="SGN-E244348 [cLEF-3-I9]">
      <seq>ccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattntctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggaaaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattaaccacagagaagcatttagcactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61200" stop="66789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61500" g_stop="61738" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="359" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="492" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="541" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66489" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="608" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E244348" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61500" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCT</genome_strand>
        <mrna_strand>CCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTNTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAAAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAACCACAGAGAAGCATTTAGCACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271331" ref_strand="+" ref_description="SGN-E271331 [cLEM-5-A1]">
      <seq>ccccttttttcccccatcttttgtaagctaggtcttttcaactgtcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttcatattgcaccatagcttcagtctcttcccattcaagatttacagagacaaaatgagtcaagtcttgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61200" stop="64951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61500" g_stop="61738" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="359" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.881" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64651" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="466" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E271331" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61500" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGA</genome_strand>
        <mrna_strand>CCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTGTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTCATATTGCACCATAGCTTCAGTCTCTTCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTCTTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273195" ref_strand="+" ref_description="SGN-E273195 [cLEM-24-N6]">
      <seq>gaggcttttgtaagctaggtcttttcaacctctcttcctagctaccataacatgatgaacattaccacatatttcttgattttgactcataccttttaccttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaaccgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggaccacctgcgccaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61217" stop="66616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61513" g_stop="61738" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="355" r_length="123" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="488" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="537" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66432" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="547" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E273195" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61513" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTTTTGTAAGCTAGGTCTTTTCAA-CTCTCTTCCTAGCTA-CATAACATGATGAACATTA-CACATATTTCTTGATTTTGACTCATA-CTTTTAC-TTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAA-CGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGA-CA-CTGCG-CAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATC</genome_strand>
        <mrna_strand>GAGGCTTTTGTAAGCTAGGTCTTTTCAACCTCTCTTCCTAGCTACCATAACATGATGAACATTACCACATATTTCTTGATTTTGACTCATACCTTTTACCTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACCGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACCACCTGCGCCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271628" ref_strand="+" ref_description="SGN-E271628 [cLEM-23-E5]">
      <seq>gaggcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61217" stop="66616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61513" g_stop="61738" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="346" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="479" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="528" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66431" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="537" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E271628" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61513" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGAT</genome_strand>
        <mrna_strand>GAGGCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547417" ref_strand="+" ref_description="SGN-E547417 [TUS-71-E15]">
      <seq>atcttttgtaagctaggtcttttcaactctcttcctagatacataacatgatgaacattacacatatttcttgattttgactcatccttgatccgtctcttaattcttcgatccgtattttttgacctaaaaagaaaaagaacttataagaaatgtcacttgacatgacatattcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcgtctgctacaaagtcattgcacagatttgctcccagtcctactgatcatgatgcaacgctagatcccctcctattcgcccaccagagaaaagacaacgtgttccttctgcctacaatagattagtcgaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccactaatttggatcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61215" stop="67446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61515" g_stop="61738" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="353" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="488" r_length="135" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="537" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="613" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67146" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="688" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E547417" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61515" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTT-TTAC-T-TC-TAATTCTTCGATCCGTATTTTCTGACCT------AAAAAG--CTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGAT-CAAC-CTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCT</genome_strand>
        <mrna_strand>ATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGATACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATCCTTGATCCGTCTCTTAATTCTTCGATCCGTATTTTTTGACCTAAAAAGAAAAAGAACTTATAAGAAATGTCACTTGACATGACATA-T--TCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCGTCTGCTACAAAGTCATTGCACAGATTTGCTCCCAGTCCTACTGATCATGATGCAACGCTAGATCCCCTCCTATTCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTAGTCGA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCACTAATTTGGATCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724673" ref_strand="+" ref_description="SGN-E724673 [FC24DD01]">
      <seq>gcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61217" stop="67622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61516" g_stop="61738" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="343" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="476" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="525" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="601" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67322" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="852" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E724673" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61516" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTC</genome_strand>
        <mrna_strand>GCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361785" ref_strand="+" ref_description="SGN-E361785 [cLPP-12-K9]">
      <seq>tcttttgtaagctaggtcttttcaactctcttcctagatacataacatgatgaacattacacatatttcttgattttgactcatccttgatccgtctcttaattcttcgatccgtattttttgacctaaaaagaaaaagaacttataagaaatgtcacttgacatgacatattcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61216" stop="64971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61516" g_stop="61738" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="352" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64671" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="479" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E361785" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61516" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTT-TTAC-T-TCT-AATTCTTCGATCCGTATTTTCTGACCT------AAAAAG--CTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTA</genome_strand>
        <mrna_strand>TCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGATACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATCCTTGATCCGTCTCTTAATTCTTCGATCCGTATTTTTTGACCTAAAAAGAAAAAGAACTTATAAGAAATGTCACTTGACATGACATA-T--TCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258703" ref_strand="+" ref_description="SGN-E258703 [cLEG-50-D14]">
      <seq>cttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagaaacgtgttccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61217" stop="64980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61517" g_stop="61738" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="342" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="475" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E258703" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61517" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>CTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272907" ref_strand="+" ref_description="SGN-E272907 [cLEM-25-N9]">
      <seq>ttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgccacagtatgatgacaatagtgacagtaaggtgtggacacctgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagaattaccagagaccaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctaccaaattcatttcacagattttctcccattcctacctgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61218" stop="66616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61518" g_stop="61738" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="343" r_length="122" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.881" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="479" r_length="136" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="528" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66431" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="537" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E272907" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61518" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACA-CTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTA-CAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGA-CAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTA-CAAATTCATTTCACAGATTTTCTCCCATTCCTA-CTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGAT</genome_strand>
        <mrna_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCCACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACCTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGAATTACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACCAAATTCATTTCACAGATTTTCTCCCATTCCTACCTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245430" ref_strand="+" ref_description="SGN-E245430 [cLEF-53-N20]">
      <seq>ttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61218" stop="64980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61518" g_stop="61738" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="341" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="474" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E245430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61518" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245431" ref_strand="+" ref_description="SGN-E245431 [cLEF-53-N22]">
      <seq>ttttgtaagctaggtcttttcaactgggttcctatctacatggcatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagtgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61218" stop="64877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61518" g_stop="61738" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="341" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64577" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="374" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E245431" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61518" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATG</genome_strand>
        <mrna_strand>TTTTGTAAGCTAGGTCTTTTCAACTGGGTTCCTATCTACATGGCATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269795" ref_strand="+" ref_description="SGN-E269795 [cLEM-17-G19]">
      <seq>tcttttcaactctcttcctagctacataacatgatgaacatgacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggaaaaaagacaacgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61232" stop="64980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61532" g_stop="61738" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="327" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="460" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E269795" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61532" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATGACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269730" ref_strand="+" ref_description="SGN-E269730 [cLEM-17-H19]">
      <seq>tcttttcaactctcttcctagctacataacatgatgaacattgcacatatttcttgattttgactcatacttttacttctaattcttcgatccgcattttctgacctaaaaagctcataagaaatgtgacttgacatgacatattcctcctcttcctcggaacgtgtatgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61232" stop="64380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61532" g_stop="61738" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64080" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="286" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E269730" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61532" e_stop="61738"/>
          <exon e_start="64002" e_stop="64080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATA</genome_strand>
        <mrna_strand>TCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTGCACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGCATTTTCTGACCTAAAAAGCTCATAAGAAATGTGACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTATGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249382" ref_strand="+" ref_description="SGN-E249382 [cLEF-50-B23]">
      <seq>cttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61233" stop="66787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61533" g_stop="61738" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="326" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="459" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="508" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66487" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="573" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E249382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61533" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTG</genome_strand>
        <mrna_strand>CTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241336" ref_strand="+" ref_description="SGN-E241336 [cLED-28-G15]">
      <seq>ttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61234" stop="66791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61534" g_stop="61738" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="325" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="458" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="507" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66491" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="576" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E241336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61534" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGC</genome_strand>
        <mrna_strand>TTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325945" ref_strand="+" ref_description="SGN-E325945 [cTOC-12-B22]">
      <seq>ttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61234" stop="66740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61534" g_stop="61738" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="325" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="458" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="507" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66440" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="525" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E325945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61534" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGAT</genome_strand>
        <mrna_strand>TTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244226" ref_strand="+" ref_description="SGN-E244226 [cLEF-37-G11]">
      <seq>ttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61236" stop="64980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61536" g_stop="61738" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="323" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="456" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E244226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61536" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310463" ref_strand="+" ref_description="SGN-E310463 [cTOA-9-K17]">
      <seq>caactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61238" stop="66616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61538" g_stop="61738" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="321" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="454" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66431" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="512" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E310463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61538" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGAT</genome_strand>
        <mrna_strand>CAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359508" ref_strand="+" ref_description="SGN-E359508 [cLHT-31-D24]">
      <seq>gaggtctcttcctagctaccataacatgatgaaccattacaccatatttcttgattttgacctcataccttttaccttctaattcttcgatccgtattttctgaccctaaaaagcttataagaaatgtcacttgacatgaccatattcctcctcttcctcggaaccgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgaccatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61242" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61538" g_stop="61738" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="330" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64650" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="436" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E359508" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61538" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTCTTCCTAGCTA-CATAACATGATGAA-CATTACA-CATATTTCTTGATTTTGA-CTCATA-CTTTTA-CTTCTAATTCTTCGATCCGTATTTTCTGACC-TAAAAAGCTTATAAGAAATGTCACTTGACATGA-CATATTCCTCCTCTTCCTCGGAA-CGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</genome_strand>
        <mrna_strand>GAGGTCTCTTCCTAGCTACCATAACATGATGAACCATTACACCATATTTCTTGATTTTGACCTCATACCTTTTACCTTCTAATTCTTCGATCCGTATTTTCTGACCCTAAAAAGCTTATAAGAAATGTCACTTGACATGACCATATTCCTCCTCTTCCTCGGAACCGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACCATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250704" ref_strand="+" ref_description="SGN-E250704 [cLEG-7-M21]">
      <seq>actctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaaaacaacntgttccttctgcctacaatagatttatcaaagaggagatccaaaggataaaggcaagcaatcctgatattatccacagagaagcatttagcactgctgccaaaaattgggcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61240" stop="66811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61540" g_stop="61738" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="319" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="452" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="577" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E250704" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61540" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</genome_strand>
        <mrna_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAAACAACNTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................AGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTATCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241009" ref_strand="+" ref_description="SGN-E241009 [cLED-24-F24]">
      <seq>actctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61240" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61540" g_stop="61738" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="319" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64650" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="425" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E241009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61540" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</genome_strand>
        <mrna_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261314" ref_strand="+" ref_description="SGN-E261314 [cLEG-68-J10]">
      <seq>actctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61240" stop="64884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61540" g_stop="61738" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="319" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64584" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="359" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E261314" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61540" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAG</genome_strand>
        <mrna_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240214" ref_strand="+" ref_description="SGN-E240214 [cLED-25-I12]">
      <seq>tctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61242" stop="66811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61542" g_stop="61738" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="317" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="450" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="499" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="575" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E240214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61542" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</genome_strand>
        <mrna_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240223" ref_strand="+" ref_description="SGN-E240223 [cLED-25-M12]">
      <seq>tctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61242" stop="66786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61542" g_stop="61738" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="317" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="450" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="499" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66486" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="563" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E240223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61542" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACT</genome_strand>
        <mrna_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237763" ref_strand="+" ref_description="SGN-E237763 [cLED-19-P8]">
      <seq>tctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61242" stop="64896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61542" g_stop="61738" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="317" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64596" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="369" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E237763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61542" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCAT</genome_strand>
        <mrna_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325942" ref_strand="+" ref_description="SGN-E325942 [cTOC-12-H17]">
      <seq>ctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctccttttcgcgtaccggagaaaaacaacgtgttccttctgcctacaatagatttatcaaagaggagatccaacagataaaggcaagcaatcctgatattatccacagagaagcatttagcactgctgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61243" stop="66793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61543" g_stop="61738" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="316" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="449" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="497" r_length="48" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66493" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="568" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E325942" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61543" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCA</genome_strand>
        <mrna_strand>CTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTTTTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAA-ACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................AGAGGAGATCCAACAGATAAAGGCAAGCAATCCTGATATTATCCACAGAGAAGCATTTAGCACTGCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228238" ref_strand="+" ref_description="SGN-E228238 [cLED-2-J15]">
      <seq>tcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61244" stop="66811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61544" g_stop="61738" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="315" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="448" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="497" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="573" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E228238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61544" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</genome_strand>
        <mrna_strand>TCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318686" ref_strand="+" ref_description="SGN-E318686 [cTOB-9-C20]">
      <seq>tcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61244" stop="64958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61544" g_stop="61738" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="315" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64658" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="429" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E318686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61544" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCT</genome_strand>
        <mrna_strand>TCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261688" ref_strand="+" ref_description="SGN-E261688 [cLEG-61-M2]">
      <seq>cctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacantttcctcatatccattttggactcaagctggatggggcacaacaacccaataattggatcatgctgntgcaggagagggtcctcanaaaaacattggtctctattnattataataannatataaatatatgatctagctatattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61248" stop="67532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61548" g_stop="61738" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="311" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="444" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="493" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="569" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67232" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="727" r_length="158" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E261688" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61548" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</genome_strand>
        <mrna_strand>CCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACANTTTCCTCATATCCATTTTGGACTCAAGCTGGATGGGGCACAACAACCCAAT-AATTGGATCATGCTGNTGCAGGAGAGGGTCCTCANAAAAACATTGGTCTCTATTNATTAT-AATAANNATATAAAT-ATATGATCTAGCTATATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261901" ref_strand="+" ref_description="SGN-E261901 [cLEG-61-L2]">
      <seq>cctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagagggtatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagaacacgtggtccttctggctaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61248" stop="64980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61548" g_stop="61738" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="311" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="444" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E261901" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61548" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>CCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGGTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250831" ref_strand="+" ref_description="SGN-E250831 [cLEG-13-E18]">
      <seq>gttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaagagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61282" stop="67532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61581" g_stop="61738" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="278" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="411" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="460" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="536" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67232" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="697" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E250831" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61581" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</genome_strand>
        <mrna_strand>GTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAAGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393756" ref_strand="+" ref_description="SGN-E393756 [TUS-42-N11]">
      <seq>ttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttaacactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaaacaaaccaaataaattggatcatgctgttgccggagaagggtctccaaaaacaattggtctctattaattataaattaaaaaaaataaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61285" stop="67513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61585" g_stop="61738" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="273" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="406" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="531" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67212" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="674" r_length="143" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E393756" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61585" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAAC-AAACAAACC-AATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATA</genome_strand>
        <mrna_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCAT-CAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAACACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAAACAAACCAAATAAATTGGATCATGCTGTTGCCGGAGAAGGGTCTCCAAAAACAATTGGTCTCTATTAATTATAAATTAAAAAAAATAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394670" ref_strand="+" ref_description="SGN-E394670 [TUS-42-P10]">
      <seq>ttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaacaaaccaataaattggatcatgctgttgcaggagagggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61285" stop="67462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61585" g_stop="61738" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="273" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="406" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="531" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67162" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="621" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E394670" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61585" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTC</genome_strand>
        <mrna_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCAT-CAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAAC-AACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393736" ref_strand="+" ref_description="SGN-E393736 [TUS-42-O10]">
      <seq>ttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61285" stop="67420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61585" g_stop="61738" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="273" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="406" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="531" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67120" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="580" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E393736" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61585" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACA</genome_strand>
        <mrna_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCAT-CAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260988" ref_strand="+" ref_description="SGN-E260988 [cLEG-55-C1]">
      <seq>tgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcacgagagggtcctcaaaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61286" stop="67532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61586" g_stop="61738" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="273" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="406" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="531" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67232" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="692" r_length="161" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E260988" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61586" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</genome_strand>
        <mrna_strand>TGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCACGAGAGGGTCCTCAAAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248319" ref_strand="+" ref_description="SGN-E248319 [cLEG-1-M19]">
      <seq>tgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61286" stop="67413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61586" g_stop="61738" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="272" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="405" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="454" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="530" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67113" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="572" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E248319" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61586" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</genome_strand>
        <mrna_strand>TGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCAT-CAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257773" ref_strand="+" ref_description="SGN-E257773 [cLEG-39-N2]">
      <seq>ttgactcataccttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaaccgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgaccagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagaccaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaagataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61291" stop="67413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61591" g_stop="61738" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="271" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="405" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="454" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="530" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67113" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="572" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E257773" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61591" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTCATA-CTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAA-CGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGA-CAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGA-CAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</genome_strand>
        <mrna_strand>TTGACTCATACCTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACCGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACCAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAAGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274451" ref_strand="+" ref_description="SGN-E274451 [cLEN-19-C12]">
      <seq>gactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcgggtagcgttccatgcaacagtatgatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61293" stop="64332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61593" g_stop="61738" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64032" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="177" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E274451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61593" e_stop="61738"/>
          <exon e_start="64002" e_stop="64032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAA</genome_strand>
        <mrna_strand>GACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCGTTCCATGCAACAGTATGATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257722" ref_strand="+" ref_description="SGN-E257722 [cLEG-39-J11]">
      <seq>tacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61299" stop="64980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61599" g_stop="61738" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="260" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="393" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E257722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61599" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256491" ref_strand="+" ref_description="SGN-E256491 [cLEG-38-P5]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctaactatattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61331" stop="67532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61631" g_stop="61738" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="361" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="410" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="486" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67232" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="647" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E256491" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61631" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAACTATATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256074" ref_strand="+" ref_description="SGN-E256074 [cLEG-37-G21]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61331" stop="67447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61631" g_stop="61738" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="361" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="410" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="486" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67147" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="562" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E256074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61631" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTG</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259050" ref_strand="+" ref_description="SGN-E259050 [cLEG-41-A12]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagcatgatgacaatagtgacagtaaggtgtggacactgaacaaattcgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61331" stop="67412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61631" g_stop="61738" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="361" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="410" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="486" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67112" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="527" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E259050" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61631" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGA</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGCATGATGACAATAGTGACAGTAAGGTGTGGACACTGAACAAATTCGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256753" ref_strand="+" ref_description="SGN-E256753 [cLEG-40-P22]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61331" stop="64980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61631" g_stop="61738" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="361" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E256753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61631" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259260" ref_strand="+" ref_description="SGN-E259260 [cLEG-43-D18]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61331" stop="64951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61631" g_stop="61738" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64651" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="335" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E259260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61631" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGA</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254653" ref_strand="+" ref_description="SGN-E254653 [cLEG-29-G14]">
      <seq>tgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61333" stop="67452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61633" g_stop="61738" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="226" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="359" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="408" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="484" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67152" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="565" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E254653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61633" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCA</genome_strand>
        <mrna_strand>TGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259004" ref_strand="+" ref_description="SGN-E259004 [cLEG-41-A23]">
      <seq>tgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61333" stop="66607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61633" g_stop="61738" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="226" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="359" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="408" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E259004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61633" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA</genome_strand>
        <mrna_strand>TGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250016" ref_strand="+" ref_description="SGN-E250016 [cLEG-4-N3]">
      <seq>aagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61342" stop="67413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61642" g_stop="61738" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="217" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="350" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="399" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="475" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67113" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="517" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E250016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61642" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</genome_strand>
        <mrna_strand>AAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261978" ref_strand="+" ref_description="SGN-E261978 [cLEG-58-M6]">
      <seq>tcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcangagaaggtcctcagaaaacaattggtctctattaattataataaaataataataatatgatctagctatattatgatcncaaatatatataaatataatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61358" stop="67556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61658" g_stop="61738" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="201" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="383" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="459" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67256" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="642" r_length="183" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E261978" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61658" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATAT</genome_strand>
        <mrna_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCANGAGAAGGTCCTCAGAAAACAATTGGTCTCTATTAATTAT-AATAAAATAAT-AATAATATGATCTAGCTATATTATGATCNCAAATATATATAAATATAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264908" ref_strand="+" ref_description="SGN-E264908 [cLEG-71-D16]">
      <seq>tcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61358" stop="67546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61658" g_stop="61738" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="201" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="383" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="459" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67246" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="635" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E264908" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61658" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGC-AGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATA</genome_strand>
        <mrna_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257962" ref_strand="+" ref_description="SGN-E257962 [cLEG-48-K18]">
      <seq>tcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatctaggaggagatccaaaggataaaggcaagcaatcctgatattagccacccagaagcatttagcactgctgccaaaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61358" stop="66798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61658" g_stop="61738" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="201" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="383" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="459" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E257962" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61658" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</genome_strand>
        <mrna_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCTA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACCCAGAAGCATTTAGCACTGCTGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258048" ref_strand="+" ref_description="SGN-E258048 [cLEG-48-K17]">
      <seq>tcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctggctacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61358" stop="66596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61658" g_stop="61738" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="201" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66296" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="372" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E258048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61658" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAAT</genome_strand>
        <mrna_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGGCTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260755" ref_strand="+" ref_description="SGN-E260755 [cLEG-54-N24]">
      <seq>tgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatnataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttanggccttggattccttgtttttttattcgnattataaagtgtactattaactacgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61363" stop="67701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61663" g_stop="61738" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="196" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="329" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="378" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="454" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67401" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="784" r_length="330" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E260755" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61663" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTAT-ATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTA</genome_strand>
        <mrna_strand>TGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATNATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTANGGCCTTGGATTCCTTGTTTTTTTATTCGNATTATAAAGTGT-ACTATTAACTACGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325128" ref_strand="+" ref_description="SGN-E325128 [cTOC-13-D3]">
      <seq>ctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61378" stop="66605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61678" g_stop="61738" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="181" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="314" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66305" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="361" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E325128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61678" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATC</genome_strand>
        <mrna_strand>CTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261536" ref_strand="+" ref_description="SGN-E261536 [cLEG-57-I24]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatanttatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttgggattccttgtttttttattcgtattataagttgtaactattaactacgattattctanntaatatacgttgtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61398" stop="67706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61698" g_stop="61738" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67424" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="775" r_length="356" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E261536" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61698" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATA-TTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTT-GGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTA-ATAATATACGTTGTTTAT</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATANTTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTANNTAATATACGTTGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263856" ref_strand="+" ref_description="SGN-E263856 [cLEG-73-B8]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatatatattatattaggtgagatgtattatatantattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattatctanntatatacgttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61398" stop="67706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61698" g_stop="61738" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67423" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="771" r_length="352" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E263856" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61698" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATA-TAGGTGAGATGTATTATATA-TATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTA</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATAT-ATATTATATTAGGTGAGATGTATTATATANTATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTA-TCTANNTATATACGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258656" ref_strand="+" ref_description="SGN-E258656 [cLEG-50-I8]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacnaatatatataaatataatattatatagggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61398" stop="67640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61698" g_stop="61738" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67340" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="689" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E258656" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61698" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATA-GGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTT</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACNAATATATATAAATATAATATTATATAGGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253619" ref_strand="+" ref_description="SGN-E253619 [cLEG-32-O11]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61398" stop="67596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61698" g_stop="61738" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67296" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="644" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E253619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61698" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCT</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254178" ref_strand="+" ref_description="SGN-E254178 [cLEG-34-O10]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagaatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61398" stop="67595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61698" g_stop="61738" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="162" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="295" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="344" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="420" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67295" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="644" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E254178" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61698" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAG-ATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTC</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGAATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259944" ref_strand="+" ref_description="SGN-E259944 [cLEG-51-K24]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61398" stop="66616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61698" g_stop="61738" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66432" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="353" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E259944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61698" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATC</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549532" ref_strand="+" ref_description="SGN-E549532 [TUS-71-E15](-)">
      <seq>tcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagatttctccccattccctatgatcatgatcaacctagatcccctcctattcgcccaccagagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccactaaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactatgattactccaataatatacgttgtttattattaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61408" stop="67729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61708" g_stop="61738" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64002" g_stop="64121" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="151" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="284" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="333" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="409" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67072" g_stop="67429" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="768" r_length="359" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="769" polyA_stop="788"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E549532" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61708" e_stop="61738"/>
          <exon e_start="64002" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAAC---TAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTA</genome_strand>
        <mrna_strand>TCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTCTCCCCATTCCCTATGATCATGATCAACCTAGATCCCCTCCTATTCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCACTAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCAC-AA-ATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTATGATTACTCCAATAATATACGTTGTTTATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242412" ref_strand="+" ref_description="SGN-E242412 [cLED-30-G12]">
      <seq>tccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63710" stop="67409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64010" g_stop="64121" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="245" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="294" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="370" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67072" g_stop="67109" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="408" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E242412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64010" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCT</genome_strand>
        <mrna_strand>TCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711900" ref_strand="+" ref_description="SGN-E711900 [FB03BC10]">
      <seq>cctcgtgccggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63750" stop="67729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64042" g_stop="64121" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="214" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="263" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="339" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67072" g_stop="67439" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="707" r_length="368" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E711900" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64042" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTG-TGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAG</genome_strand>
        <mrna_strand>CCTCGTGCCGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251100" ref_strand="+" ref_description="SGN-E251100 [cLEG-17-H5]">
      <seq>ctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgttttttagctctttcagcattatccctttagggccttggattccttgtttttttattccgattataagttgtaactattaactacgattattctaataatatacgttggttattattagtgtaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63801" stop="67735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64101" g_stop="64121" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64545" g_stop="64677" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="154" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="203" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="279" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67072" g_stop="67446" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="654" r_length="375" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E251100" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64101" e_stop="64121"/>
          <exon e_start="64545" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTG-TTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAGTATTATT</genome_strand>
        <mrna_strand>CTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCCGATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGGTTATTATTAGT-GTAAAAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394218" ref_strand="+" ref_description="SGN-E394218 [TUS-42-P10](-)">
      <seq>atcatcatccttttctacaaattcatttcacggattttttcccattcttagtgatcatgatcaacctagatcccctcctattggcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagagggaactattaactacgattattctaataatatacgttaaaggggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64292" stop="67718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64592" g_stop="64677" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="135" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="211" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67072" g_stop="67418" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="558" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="579"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E394218" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64592" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTT</genome_strand>
        <mrna_strand>ATCATCATCCTTTTCTACAAATTCATTTCACGGATTTTTTCCCATTCTTAGTGATCATGATCAACCTAGATCCCCTCCTATTGGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGAGGGAACTATTAACTACGATTATTCTAATAATATACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241283" ref_strand="+" ref_description="SGN-E241283 [cLED-26-J17]">
      <seq>agattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttggttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttggttattattaaanaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64323" stop="67729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64623" g_stop="64677" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="104" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="180" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67072" g_stop="67439" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="548" r_length="368" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E241283" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64623" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAG</genome_strand>
        <mrna_strand>AGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGGTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGGTTATTATTAAANAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235382" ref_strand="+" ref_description="SGN-E235382 [cLED-11-P5]">
      <seq>agattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattattnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64323" stop="67728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64623" g_stop="64677" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="104" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="180" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67072" g_stop="67429" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="538" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="575"/>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E235382" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64623" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTA</genome_strand>
        <mrna_strand>AGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392603" ref_strand="+" ref_description="SGN-E392603 [TUS-35-B18](-)">
      <seq>atcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttcctcctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64351" stop="67729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64651" g_stop="64677" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="76" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="152" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67072" g_stop="67438" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="519" r_length="367" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E392603" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64651" e_stop="64677"/>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTA</genome_strand>
        <mrna_strand>ATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTCCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393735" ref_strand="+" ref_description="SGN-E393735 [TUS-42-O10](-)">
      <seq>gcgtactggagaaaagacaacgggttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65955" stop="67729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66259" g_stop="66307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="52" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66423" g_stop="66498" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="128" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67072" g_stop="67439" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="496" r_length="368" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E393735" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66259" e_stop="66307"/>
          <exon e_start="66423" e_stop="66498"/>
          <exon e_start="67072" e_stop="67439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAG</genome_strand>
        <mrna_strand>TACTGGAGAAAAGACAACGGGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394728" ref_strand="+" ref_description="SGN-E394728 [TUS-42-O12](-)">
      <seq>aaaaaaacacctgggactcaaggtggaaggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="+" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66788" stop="67729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67086" g_stop="67440" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="+" ref_id="SGN-E394728" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67086" e_stop="67440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAGT</genome_strand>
        <mrna_strand>AAAAAAACACCTGGGACTCAAGGTGGAAGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553240" ref_strand="+" ref_description="SGN-E553240 [cTSB-3-G11]">
      <seq>atttagatatggaatttcatttttatctatcagatgataaggcaattactaaaggcgctgagattgtaatgaatgagccattaaagtccacagatatccctggacggttaaatgtacttgtaaattggtcacctaaaatggttgaaaaatacaatacaagtcttttcagctcacttcccgaagttttcaaatctgggttttttggcaagagacctcaagattctgtctcactgtataaatgtcttgaggcatttctgaaggaagaacctctagggccagaagatatgtggttttgccctggatgtaaggagcatcgccaagccactaagaagttggatctttggagactgccggaaattctggtcatccacctgaagaggttctcatacagccggtttataaagaacaagttggagacatacgttgacttccccactcatgatctcgatttatcctcatatatggcctacaaggatggaaaatcttcctatcggtatatgctttatgcaattagcaaccattatggaagcatgggagggggtcactatactgcatttgttcatcaaggtgctgatcggtggtatgacttcgatgacagccatgtgtctcccatcaacaaggacaagatcaaaacctcagcagcgtatgttctgttttatagacgagttgaagaaacctaacgttagattatagttactaaacatcaaggcttgatttatcttttcgcaaagccttacaggaatgggtttggtttcaacattctttgacctttggcaccatggcatccagtttagttgtagttttgggtcaaaaagaatctagtgaagtggtaacaatggttatgtagcagtgtaacaaagagggaaagaaatttaagttaatgttttcatagccgttttaaataaaaaatacttttccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0131F12-z5skV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0131F12.1" temp_strand="-" temp_description="C06SLe0131F12.1  AC219219.1 htgs_phase:3 submitted_to_sgn_as:C06SLe0131F12 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74102" stop="71334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73802" g_stop="73514" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73513" i_stop="72874" i_length="640">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72873" g_stop="72600" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="563" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72599" i_stop="71993" i_length="607">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71992" g_stop="71626" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="930" r_length="367" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0131F12.1" gen_strand="-" ref_id="SGN-E553240" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>930</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0131F12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73802" e_stop="73514"/>
          <exon e_start="72873" e_stop="72600"/>
          <exon e_start="71992" e_stop="71626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGATATGGAATTTCATTTTTATCTATCAGATGATAAGGCAATTACTAAAGGCGCTGAGATTGTAATGAATGAGCCATTAAAGTCCACAGATATCCCTGGACGGTTAAATGTACTTGTAAATTGGTCACCTAAAATGGTTGAAAAATACAATACAAGTCTTTTCAGCTCACTTCCCGAAGTTTTCAAATCTGGGTTTTTTGGCAAGAGACCTCAAGATTCTGTCTCACTGTATAAATGTCTTGAGGCATTTCTGAAGGAAGAACCTCTAGGGCCAGAAGATATGTGGTAAGTATGCAGCTCCTTCACTTCTGTGATTGTACGCCATCTGTCCGCAAGTTTTATATTTATAAATTATAACACATGAATGTTCAGAGATTTCTTGAAATGGTTCTCTTTTTGCTTCTTTTTTGGTTTGTGCTAACAGTCATAAATCCTCAACGTTCGTAATTACATACTGTATTCTCCCTTTGATACAAAATTTTATTTCAATTAGGTCGATATTCTTCACCACACCTTGATTGCTTATGGGGCTTAAACTGTTCTTATTAGCCTTAACCAAATTGGACCTTGACTTTGTAGCATGGCATGAGCAGTAGCCTCCAAACCACTAGTTCAGTTATGTTAAAGAAATGACGACACGACATTGGCTGATGCTGTCACGTAACACCTCTATTGACTTTCTGCACATTGCATGAAGTGTTGCTCTTTGTTTCTTGAATCAACTATATACAGTTTTTAGATAATGACATTGAGTTATTTATCAGGGCCACTTTTGGCAATGACAGTCATATTCATCGGGTTGAAAGACTTCTTTCATGCAAAAATTCTAATATTCTATTTTATCATCTAATCATTTTTTTGTGTCATTCATTTTGGAAGTATGAATATGATCTGCCTAACGTTTTTTTTTCGTATCCAACATTAGGTTTTGCCCTGGATGTAAGGAGCATCGCCAAGCCACTAAGAAGTTGGATCTTTGGAGACTGCCGGAAATTCTGGTCATCCACCTGAAGAGGTTCTCATACAGCCGGTTTATAAAGAACAAGTTGGAGACATACGTTGACTTCCCCACTCATGATCTCGATTTATCCTCATATATGGCCTACAAGGATGGAAAATCTTCCTATCGGTATATGCTTTATGCAATTAGCAACCATTATGGAAGCATGGGAGGGGGTCACTATACTGCATTTGTTCATGTAAGTGGTGCTGCTATTTTGAATACCTTGCTTCTTTTGCTTTCTTGTGATTCTGTTCTAATGTAAAATAGAAATTTTTAAACCTGATAAAATTGGAATACTAATGCTGGGTATAGATGTATGCAAAATTTGTACTTCTGGATGAAAGGGAAGTTAGTTTTGGATTTGCATGATATGATGCACTTGTTAGACTCCCTGAATATGCAATGTAAAACAAGTCCTTTCTTTTGTATTTTCTGCAGCATTGTCTTTGTACGATTTCTTGGCAAAACTTTAACTCGCAATATCTTATGATAAAATAATCTTCAGCTTATCCAAAAAAAAAAAAAGACTAGAACTTGGGGAGAGGGGTGGGTGGGGGTCAGAGTCAGAGTCAGGGTCACTGTACCTCTCTCCAAGGGGAAATTTAGAAATATCATGTTTCGTAGGCGTGTATAGTTTATGTAATTGCAAGTGTCTTCCATTGTATATTGAACTTTAAAGTTTAGTCATGCATCTTTGTTCTGCTGTTATCATCTGCATCATGAAGAATATGCAAGAAAGAGCCTTTCCAGTTTTCCCAATTTAATTCAAATATTGTAACCTGTTTTTTTTCTTAATAATGTAGCAAGGTGCTGATCGGTGGTATGACTTCGATGACAGCCATGTGTCTCCCATCAACAAGGACAAGATCAAAACCTCAGCAGCGTATGTTCTGTTTTATAGACGAGTTGAAGAAACCTAACGTTAGATTATAGTTACTAAACATCAAGGCTTGATTTATCTTTTCGCAAAGCCTTACAGGAATGGGTTTGGTTTCAACATTCTTTGACCTTTGGCACCATGGCATCCAGTTTAGTTGTAGTTTTGGGTCAAAAAGAATCTAGTGAAGTGGTAACAATGGTTATGTAGCAGTGTAGCAAAGAGGGAAAGAAATTTAAGTTAATGTTTCCATAGCCGTTTTAAATAGAAGATACTTTTCCTTAATTATGGCA</genome_strand>
        <mrna_strand>ATTTAGATATGGAATTTCATTTTTATCTATCAGATGATAAGGCAATTACTAAAGGCGCTGAGATTGTAATGAATGAGCCATTAAAGTCCACAGATATCCCTGGACGGTTAAATGTACTTGTAAATTGGTCACCTAAAATGGTTGAAAAATACAATACAAGTCTTTTCAGCTCACTTCCCGAAGTTTTCAAATCTGGGTTTTTTGGCAAGAGACCTCAAGATTCTGTCTCACTGTATAAATGTCTTGAGGCATTTCTGAAGGAAGAACCTCTAGGGCCAGAAGATATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCCCTGGATGTAAGGAGCATCGCCAAGCCACTAAGAAGTTGGATCTTTGGAGACTGCCGGAAATTCTGGTCATCCACCTGAAGAGGTTCTCATACAGCCGGTTTATAAAGAACAAGTTGGAGACATACGTTGACTTCCCCACTCATGATCTCGATTTATCCTCATATATGGCCTACAAGGATGGAAAATCTTCCTATCGGTATATGCTTTATGCAATTAGCAACCATTATGGAAGCATGGGAGGGGGTCACTATACTGCATTTGTTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTGCTGATCGGTGGTATGACTTCGATGACAGCCATGTGTCTCCCATCAACAAGGACAAGATCAAAACCTCAGCAGCGTATGTTCTGTTTTATAGACGAGTTGAAGAAACCTAACGTTAGATTATAGTTACTAAACATCAAGGCTTGATTTATCTTTTCGCAAAGCCTTACAGGAATGGGTTTGGTTTCAACATTCTTTGACCTTTGGCACCATGGCATCCAGTTTAGTTGTAGTTTTGGGTCAAAAAGAATCTAGTGAAGTGGTAACAATGGTTATGTAGCAGTGTAACAAAGAGGGAAAGAAATTTAAGTTAATGTTTTCATAGCCGTTTTAAATAAAAAATACTTTTCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>159</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3242" PGL_stop="3911"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3242" e_stop="3911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3242" e_stop="3911" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3242" stop="3911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3242" stop="3629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAAGTGACGCCACTTGTTTATACCAACTGCACAAGAACATATAGGTGCACTATTTATTATATTCTTTTTTATATATATTTAAATCATTTTTTCAAAATTAGCGATTACATGTACATCGTTACTAAGCCATGTGGGTCCGCTTGCCTAAGGCCCTCACTAGCTCCGATCCTTCCTTGTGCATGAATATCTTAAATTGTAGAATTATTGTTCTGTTTCACATTTAGTGTCATACCTTTTTAATTCATAAATTAAATGCACATGCAATTTTTCTTTTGAAGACGATCT</gDNA_template>
            <first_frame> I  Y  V  L  F  L  Y  L  M  V  L  F  L  R  K  N  K  I  R  T  F  W  R  K  E  C  W  G  V  E  P  *  *  L  S  C  K  E  S  S  C  P  I  C  F  Y  V  V  Y  D  G  A  K  I  F  I  K  E  F  K  I  *  K  I  K  Y  I  K  K  S  K  V  F  N  I  *  S  F  I  I  *  I  K  K  F  F  *  L  Y  M  S  N  I  F  F  A  Q  K  R  I  R  *  T  L  S  Q  R  R  T  Q  I  L  K  T  L  G  A  L  Y  K  L  *  S  K  L  K  N  K  I  S  D  A  T  C  L  Y  Q  L  H  K  N  I  *  V  H  Y  L  L  Y  S  F  L  Y  I  F  K  S  F  F  Q  N  *  R  L  H  V  H  R  Y  *  A  M  W  V  R  L  P  K  A  L  T  S  S  D  P  S  L  C  M  N  I  L  N  C  R  I  I  V  L  F  H  I  *  C  H  T  F  L  I  H  K  L  N  A  H  A  I  F  L  L  K  T  I  </first_frame>
            <second_frame>  F  M  F  S  S  F  I  *  W  F  F  F  *  E  K  T  K  *  E  L  F  G  E  K  N  V  G  G  L  N  L  N  S  F  L  V  K  K  A  A  A  Q  F  V  F  T  S  F  M  M  E  L  K  F  S  L  K  S  L  K  Y  K  K  L  N  I  *  K  S  R  K  Y  S  I  F  S  H  L  *  Y  R  *  K  N  F  F  N  Y  I  *  V  I  Y  F  L  H  R  R  E  F  D  E  P  *  A  R  D  E  P  R  F  *  K  L  W  V  H  Y  I  S  S  K  V  N  *  K  I  K  *  V  T  P  L  V  Y  T  N  C  T  R  T  Y  R  C  T  I  Y  Y  I  L  F  Y  I  Y  L  N  H  F  F  K  I  S  D  Y  M  Y  I  V  T  K  P  C  G  S  A  C  L  R  P  S  L  A  P  I  L  P  C  A  *  I  S  *  I  V  E  L  L  F  C  F  T  F  S  V  I  P  F  *  F  I  N  *  M  H  M  Q  F  F  F  *  R  R  S </second_frame>
            <third_frame>   L  C  S  L  P  L  F  N  G  S  F  F  K  K  K  Q  N  K  N  F  L  E  K  R  M  L  G  G  *  T  L  I  A  F  L  *  R  K  Q  L  P  N  L  F  L  R  R  L  *  W  S  *  N  F  H  *  R  V  *  N  I  K  N  *  I  Y  K  K  V  E  S  I  Q  Y  L  V  I  Y  N  I  D  K  K  I  F  L  T  I  Y  E  *  Y  I  F  C  T  E  E  N  S  M  N  P  K  P  E  T  N  P  D  F  E  N  F  G  C  T  I  *  A  L  K  *  I  K  K  *  N  K  *  R  H  L  F  I  P  T  A  Q  E  H  I  G  A  L  F  I  I  F  F  F  I  Y  I  *  I  I  F  S  K  L  A  I  T  C  T  S  L  L  S  H  V  G  P  L  A  *  G  P  H  *  L  R  S  F  L  V  H  E  Y  L  K  L  *  N  Y  C  S  V  S  H  L  V  S  Y  L  F  N  S  *  I  K  C  T  C  N  F  S  F  E  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0131F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4003" PGL_stop="4703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4003" e_stop="4703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="4003" e_stop="4703" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4003" stop="4703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTTTGTTGAGAGTTGAAAATGTGTTTAGATTGTGTAGCCTATAATTTTTTTTAAAAAAATGTGGAAGTTTTGGAAACAAATCTTTGAAAATTGGAAACCATTATTCCACATAGGTGTGTAAAGGGTATTGTGTAATGTTTTGATCAGTTAGATTCACATGTTGTTTACATGTAAAATATTAAAGTTAAATTTTGGTAAATTTCTTCTGGCATCCGTGTAATTACTTTAACTAATGAGATACTGTTTTTGTCGTAATTAAAAGGCGAATTCAAAATTCAAAAATAAGAAAAATTTCTAGCTTGTTGGGTCCCGTGGGGAGTATCATGGTGAATGACAAGTGACATAAGTGTTGAACAAGAAGAAAACTGATGATTGGAACATGTCAAATGAATAGGTTCAACGTAATTGACTGACGTATTTTGCAGCAAGTGTTGATGAGGAAGTAAGCTGACAATTGAAATATGTCAAAAGAACCAGTTCAACAACGATGGTAAAATTAGAGTCGCACTAGGATTAATTTTAATTATATTTATTAGAATTATATTTGGACTAGAATTAGATTAAAATTAGAATTATAGTATCACGAGGATTTGATTATTTATAATTGCACTATTATTATTATTATAATAGTAATATATATTGTAGTAGAACTCTAAGTATTGTTAAAATAGGACTCAACTATTTATTATTATCATCAA</gDNA_template>
            <first_frame> E  V  C  *  E  L  K  M  C  L  D  C  V  A  Y  N  F  F  *  K  N  V  E  V  L  E  T  N  L  *  K  L  E  T  I  I  P  H  R  C  V  K  G  I  V  *  C  F  D  Q  L  D  S  H  V  V  Y  M  *  N  I  K  V  K  F  W  *  I  S  S  G  I  R  V  I  T  L  T  N  E  I  L  F  L  S  *  L  K  G  E  F  K  I  Q  K  *  E  K  F  L  A  C  W  V  P  W  G  V  S  W  *  M  T  S  D  I  S  V  E  Q  E  E  N  *  *  L  E  H  V  K  *  I  G  S  T  *  L  T  D  V  F  C  S  K  C  *  *  G  S  K  L  T  I  E  I  C  Q  K  N  Q  F  N  N  D  G  K  I  R  V  A  L  G  L  I  L  I  I  F  I  R  I  I  F  G  L  E  L  D  *  N  *  N  Y  S  I  T  R  I  *  L  F  I  I  A  L  L  L  L  L  *  *  *  Y  I  L  *  *  N  S  K  Y  C  *  N  R  T  Q  L  F  I  I  I  I   </first_frame>
            <second_frame>  K  F  V  E  S  *  K  C  V  *  I  V  *  P  I  I  F  F  K  K  M  W  K  F  W  K  Q  I  F  E  N  W  K  P  L  F  H  I  G  V  *  R  V  L  C  N  V  L  I  S  *  I  H  M  L  F  T  C  K  I  L  K  L  N  F  G  K  F  L  L  A  S  V  *  L  L  *  L  M  R  Y  C  F  C  R  N  *  K  A  N  S  K  F  K  N  K  K  N  F  *  L  V  G  S  R  G  E  Y  H  G  E  *  Q  V  T  *  V  L  N  K  K  K  T  D  D  W  N  M  S  N  E  *  V  Q  R  N  *  L  T  Y  F  A  A  S  V  D  E  E  V  S  *  Q  L  K  Y  V  K  R  T  S  S  T  T  M  V  K  L  E  S  H  *  D  *  F  *  L  Y  L  L  E  L  Y  L  D  *  N  *  I  K  I  R  I  I  V  S  R  G  F  D  Y  L  *  L  H  Y  Y  Y  Y  Y  N  S  N  I  Y  C  S  R  T  L  S  I  V  K  I  G  L  N  Y  L  L  L  S  S  </second_frame>
            <third_frame>   S  L  L  R  V  E  N  V  F  R  L  C  S  L  *  F  F  L  K  K  C  G  S  F  G  N  K  S  L  K  I  G  N  H  Y  S  T  *  V  C  K  G  Y  C  V  M  F  *  S  V  R  F  T  C  C  L  H  V  K  Y  *  S  *  I  L  V  N  F  F  W  H  P  C  N  Y  F  N  *  *  D  T  V  F  V  V  I  K  R  R  I  Q  N  S  K  I  R  K  I  S  S  L  L  G  P  V  G  S  I  M  V  N  D  K  *  H  K  C  *  T  R  R  K  L  M  I  G  T  C  Q  M  N  R  F  N  V  I  D  *  R  I  L  Q  Q  V  L  M  R  K  *  A  D  N  *  N  M  S  K  E  P  V  Q  Q  R  W  *  N  *  S  R  T  R  I  N  F  N  Y  I  Y  *  N  Y  I  W  T  R  I  R  L  K  L  E  L  *  Y  H  E  D  L  I  I  Y  N  C  T  I  I  I  I  I  I  V  I  Y  I  V  V  E  L  *  V  L  L  K  *  D  S  T  I  Y  Y  Y  H  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0131F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6962" PGL_stop="15515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6962" e_stop="7347"/>
            <exon e_start="7884" e_stop="8114"/>
            <exon e_start="8671" e_stop="8727"/>
            <exon e_start="8816" e_stop="8944"/>
            <exon e_start="9454" e_stop="9531"/>
            <exon e_start="9648" e_stop="9718"/>
            <exon e_start="9833" e_stop="9876"/>
            <exon e_start="9968" e_stop="10175"/>
            <exon e_start="11472" e_stop="12033"/>
            <exon e_start="14219" e_stop="14362"/>
            <exon e_start="15099" e_stop="15515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="0.997"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="0.996"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="6962" e_stop="7347" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="7348" i_stop="7883" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="7884" e_stop="8114" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="8115" i_stop="8670" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8671" e_stop="8727" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8728" i_stop="8815" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8816" e_stop="8944" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8945" i_stop="9453" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9454" e_stop="9531" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9532" i_stop="9647" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9648" e_stop="9718" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="9719" i_stop="9832" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9833" e_stop="9876" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.929">
            <gDNA_intron_boundary i_start="9877" i_stop="9967" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9968" e_stop="10175" e_length="208"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10176" i_stop="11471" i_length="1296"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11472" e_stop="12033" e_length="562"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.905">
            <gDNA_intron_boundary i_start="12034" i_stop="14218" i_length="2185"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="14219" e_stop="14362" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14363" i_stop="15098" i_length="736"/>
          </intron>
          <exon e_serial="11" e_score="0.985">
            <gDNA_exon_boundary e_start="15099" e_stop="15515" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6962" stop="7347"/>
              <exon start="7884" stop="8114"/>
              <exon start="8671" stop="8727"/>
              <exon start="8816" stop="8944"/>
              <exon start="9454" stop="9531"/>
              <exon start="9648" stop="9718"/>
              <exon start="9833" stop="9876"/>
              <exon start="9968" stop="10175"/>
              <exon start="11472" stop="12033"/>
              <exon start="14219" stop="14362"/>
              <exon start="15099" stop="15351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6967" stop="7347"/>
              <exon start="7884" stop="7903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6981" stop="7347"/>
              <exon start="7884" stop="8114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7957" stop="8114"/>
              <exon start="8671" stop="8727"/>
              <exon start="8816" stop="8944"/>
              <exon start="9454" stop="9531"/>
              <exon start="9648" stop="9718"/>
              <exon start="9833" stop="9875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10021" stop="10175"/>
              <exon start="11472" stop="12033"/>
              <exon start="14219" stop="14249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10030" stop="10175"/>
              <exon start="11472" stop="11750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10139" stop="10175"/>
              <exon start="11472" stop="11987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10149" stop="10175"/>
              <exon start="11472" stop="12001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11705" stop="12033"/>
              <exon start="14219" stop="14287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11853" stop="12033"/>
              <exon start="14219" stop="14362"/>
              <exon start="15099" stop="15515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539696" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15103" stop="15515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283687" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGAAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAG : ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG : GGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTT : GCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAG : GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA : GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG : GGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC : GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG : ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG : ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATG : ATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTTTGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTAAGAA</gDNA_template>
            <first_frame> *  G  K  Y  Y  L  E  D  P  C  R  F  E  L  R  F  L  Y  W  *  A  S  K  I  Q  L  I  T  T  I  L  V  H  R  S  R  F  F  S  V  Q  Q  I  A  I  K  R  N  R  T  Y  T  Y  F  *  L  K  I  L  F  N  L  I  R  K  S  T  D  F  T  Y  R  F  I  R  F  R  L  I  L  N  *  G  F  K  G  R  S  D  Y  S  T  V  Y  *  A  E  C  L  T  E  *  W  I  L  N  *  S  E  W  R  K  S  R  *  V  A  C  P  R  L  I  W  L  G  C  S  S  R :   *  C  L  I  L  I  *  *  E  W  L  L  K  A  *  K  T  *  G  R  M  T  *  R  L  L  Q  N  S  *  S  I  L  V  L  R  I  W  L  R  L  V  K  K  W  L  M  L  H  L  K  K  *  Q  Q  *  V  P  K  W  M  L  R  L  N  M  K  L  A  E  L  S  S  *  R  S  R :   E  M  I  F  T  A  R  E  S  L  R  R  P  C  R  N  I  R  L :   Q  R  K  I  C  Q  A  F  L  P  R  K  A  G  V  S  H  W  L  V  P  *  T  *  C  H  V  T  *  K  L  D  N  T  M  T  A  *  R  K  V  V  R :   F  *  H  M  T  T  R  I  S  K  L  F  I  V  G  V  K  L  I  K  S  W  D  S  *  K :   M  Q  C  L  I  *  V  K  H  L  K  S  R  L  M  M  T  L  L  L  M  S  *   : G  V  S  K  K  D  W  *  K  K  V  V  L  Q  D  :  V  E  E  D  W  L  L  K  K  *  L  K  K  N  H  *  C  L  Q  K  P  W  I  I  H  F  Q  K  V  L  R  H  N  H  V  N  R  S  A  L  L  R  V  K  M  K  F  L  V  G  L  P  Y  Q  V  Q  S  L  W  R  L  *  K  M  T  P  N  P  *   : D  P  S  R  I  L  F  L  A  L  I  Q  T  H  Y  L  P  *  V  V  E  M  P  K  A  Y  L  L  K  W  *  R  Q  P  P  M  L  L  A  R  C  H  Q  K  N  Y  K  E  W  S  G  W  H  P  P  F  K  E  K  I  P  F  L  K  K  V  P  Q  I  A  L  A  L  A  Q  F  L  Q  M  *  H  P  T  C  *  K  W  Q  L  I  *  W  A  K  C  L  Q  K  T  C  K  R  C  L  Q  W  H  L  H  *  K  R  K  V  Q  Y  R  L  Q  Q  L  L  I  L  M  G  Q  V  S  S  Q  N  L  V  T  L  G  K  I  L  K  W  M  T  V  Q  V  Q  A  L  H  H  R  G  F  L  I  *  I  M  V  L  T  Q  A  Y  Q  V  Q  M  L  I  C  K  K  K  *  E  T  E  *  K  I  Q  P  *  D  R :   C  S  L  Q  *  L  K  I  *  V  Q  R  *  C  L  T  *  V  N  N  L  G  *  S  S  V  R  Q  M  Q  R  K  L  N  R  Q  C  H  L  C  H  Q  M  T  W  K  R  * :   *  S  G  L  I  E  F  K  E  E  L  K  V  R  R  R  Q  K  I  G  S  *  E  N  L  A  *  S  W  L  Y  L  C  Y  F  *  Q  S  S  F  T  S  W  A  S  S  G  A  K  L  D  V  L  A  K  Y  *  H  E  E  L  S  R  V  W  N  P  C  T  N  V  L  E  M  G  I  S  V  G  K  P  W  L  E  M  T  L  V  T  F  V  I  L  R  F  F  F  L  S  L  F  G  C  L  *  M  *  L  K  L  D  K  L  F  S  S  L  F  C  G  R  T  R  R  F  *  M  K  F  W  *  D  Y  P  L  Q  I  K   </first_frame>
            <second_frame>  R  E  N  I  T  W  K  I  L  V  V  S  N  C  D  F  S  T  G  R  R  P  K  S  N  *  L  R  P  F  L  F  I  A  L  V  F  F  R  F  N  R  S  L  S  N  V  I  A  H  I  H  I  S  D  *  K  F  C  S  I  *  F  E  N  R  R  I  L  P  T  D  S  S  D  F  A  *  F  *  I  E  D  S  R  E  D  Q  I  I  R  L  C  I  R  Q  N  V  *  R  N  D  G  S  *  I  D  Q  N  G  A  R  A  D  E  S  H  V  P  G  *  F  G  S  D  A  A  A   : D  D  V  *  S  *  F  N  E  N  G  Y  *  R  H  E  K  H  E  A  G  *  L  K  G  C  C  R  T  V  E  A  Y  S  S  *  G  Y  G  *  D  W  *  K  N  G  *  C  F  T  *  R  N  S  S  N  E  C  P  N  G  C  S  G  *  I  *  N  *  R  S  *  V  P  E  E  A   : G  K  *  S  S  Q  P  G  K  V  *  G  G  P  A  E  I  F  A   : C  K  E  K  S  V  K  H  S  C  R  E  R  Q  E  Y  L  I  G  L  F  L  E  H  D  V  M  L  L  K  N  W  T  I  R  *  L  H  K  G  R  *  *   : G  F  D  I  *  R  Q  E  Y  Q  S  S  L  S  *  G  S  S  L  *  R  A  G  T  V  R   : R  C  S  V  *  F  E  *  S  T  *  S  L  A  *  *  *  H  Y  C  *  C  L  K  :  G  C  P  R  K  I  G  E  R  R  W  F  F  K  T :   *  R  R  I  G  Y  *  R  N  N  *  R  R  T  I  S  V  F  R  S  R  G  *  F  I  S  K  K  C  C  V  T  T  T  *  I  D  Q  P  S  *  E  S  K  *  N  S  W  W  A  S  L  I  K  F  R  V  F  G  G  F  K  K  *  P  R  I  H  E  :  I  L  P  E  F  Y  F  S  R  *  S  R  H  T  I  C  L  K  W  W  K  C  Q  R  H  T  S  *  N  G  K  D  S  L  Q  C  Y  W  Q  D  V  T  R  R  T  T  K  N  G  P  V  G  I  L  L  S  R  R  K  S  L  S  *  K  R  F  L  R  *  L  W  P  W  L  S  S  S  K  C  D  T  R  H  A  E  N  G  N  *  Y  D  G  Q  N  V  S  R  R  H  A  K  D  V  Y  N  G  I  F  I  K  R  E  K  S  S  I  G  C  N  N  Y  *  F  *  W  V  R  S  A  V  K  T  S  *  H  *  G  K  F  *  S  G  *  Q  Y  K  C  K  H  F  I  T  G  V  F  *  F  K  *  W  F  L  L  K  L  I  K  F  K  C  *  S  A  R  R  N  E  K  P  N  E  R  S  S  H  E  T   : D  V  L  F  N  D  *  K  Y  E  S  R  D  D  V  *  H  E  *  T  I  W  G  E  A  Q  S  G  R  C  R  E  S  S  T  G  N  V  I  F  V  T  R  *  L  G  K  D   : D  E  V  G  *  *  N  S  K  R  S  *  R  C  E  E  D  K  K  L  A  L  R  K  T  W  H  D  L  G  Y  T  C  A  T  F  S  S  H  P  S  Q  A  G  L  H  R  E  L  N  L  T  F  *  P  N  I  S  M  K  S  *  V  E  F  G  I  L  V  L  M  Y  L  K  W  G  Y  Q  W  V  N  L  G  W  R  *  H  *  L  L  L  L  Y  Y  A  F  F  F  F  L  Y  L  G  V  C  R  C  N  L  N  L  T  N  Y  L  V  R  C  F  A  V  E  L  A  V  S  R  *  S  F  G  K  T  T  L  Y  K  L  R  </second_frame>
            <third_frame>   G  K  I  L  L  G  R  S  L  S  F  R  I  A  I  S  L  L  V  G  V  Q  N  P  T  N  Y  D  H  S  C  S  S  L  S  F  F  F  G  S  T  D  R  Y  Q  T  *  S  H  I  Y  I  F  L  I  E  N  F  V  Q  F  D  S  K  I  D  G  F  Y  L  Q  I  H  P  I  S  P  D  F  E  L  R  I  Q  G  K  I  R  L  F  D  C  V  L  G  R  M  F  N  G  M  M  D  P  E  L  I  R  M  A  Q  E  Q  M  S  R  M  S  P  A  D  L  A  R  M  Q  Q  Q  :  M  M  S  N  P  D  L  M  R  M  A  T  E  G  M  K  N  M  R  P  D  D  L  K  V  A  A  E  Q  L  K  H  T  R  P  E  D  M  A  E  I  G  K  K  M  A  N  A  S  P  E  E  I  A  A  M  S  A  Q  M  D  A  Q  V  K  Y  E  I  S  G  A  E  F  L  K  K  Q  :  G  N  D  L  H  S  Q  G  K  F  K  E  A  L  Q  K  Y  S  L  :  A  K  K  N  L  S  S  I  P  A  A  K  G  R  S  I  S  L  A  C  S  L  N  M  M  S  C  Y  L  K  T  G  Q  Y  D  D  C  I  K  E  G  S  E  :  V  L  T  Y  D  D  K  N  I  K  A  L  Y  R  R  G  Q  A  Y  K  E  L  G  Q  L  E  :  D  A  V  S  D  L  S  K  A  L  E  V  S  P  D  D  D  T  I  A  D  V  L  R :   G  V  Q  E  R  L  V  K  E  G  G  S  S  R   : R  R  G  G  L  V  I  E  E  I  I  E  E  E  P  L  V  S  S  E  A  V  D  N  S  F  P  K  S  V  A  S  Q  P  R  E  S  I  S  P  P  K  S  Q  N  E  I  L  G  G  P  P  L  S  S  S  E  S  L  E  A  L  K  N  D  P  E  S  M  R :   S  F  Q  N  F  I  S  R  A  D  P  D  T  L  S  A  L  S  G  G  N  A  K  G  I  P  P  E  M  V  K  T  A  S  N  V  I  G  K  M  S  P  E  E  L  Q  R  M  V  R  L  A  S  S  F  Q  G  E  N  P  F  L  K  K  G  S  S  D  S  F  G  P  G  S  V  P  P  N  V  T  P  D  M  L  K  M  A  T  D  M  M  G  K  M  S  P  E  D  M  Q  K  M  F  T  M  A  S  S  L  K  E  K  S  P  V  S  A  A  T  T  I  D  S  N  G  S  G  Q  Q  S  K  P  R  D  T  R  E  N  F  K  V  D  D  S  T  S  A  S  T  S  S  Q  G  F  S  D  L  N  N  G  S  Y  S  S  L  S  S  S  N  V  D  L  Q  E  E  M  R  N  R  M  K  D  P  A  M  R  Q  :  M  F  S  S  M  I  K  N  M  S  P  E  M  M  S  N  M  S  E  Q  F  G  V  K  L  S  Q  A  D  A  E  K  A  Q  Q  A  M  S  S  L  S  P  D  D  L  E  K  M  :  M  K  W  A  D  R  I  Q  R  G  V  E  G  A  K  K  T  K  N  W  L  L  G  K  P  G  M  I  L  A  I  L  V  L  L  L  A  V  I  L  H  K  L  G  F  I  G  S  *  T  *  R  S  S  Q  I  L  A  *  R  V  E  *  S  L  E  S  L  Y  *  C  T  *  N  G  D  I  S  G  *  T  L  V  G  D  D  I  S  Y  F  C  Y  I  T  L  F  F  S  F  F  I  W  V  F  V  D  V  T  *  T  *  Q  I  I  *  F  A  V  L  R  *  N  S  P  F  L  D  E  V  L  V  R  L  P  F  T  N  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7105" stop="7347"/>
                    <exon start="7884" stop="8114"/>
                    <exon start="8671" stop="8727"/>
                    <exon start="8816" stop="8944"/>
                    <exon start="9454" stop="9531"/>
                    <exon start="9648" stop="9718"/>
                    <exon start="9833" stop="9876"/>
                    <exon start="9968" stop="10175"/>
                    <exon start="11472" stop="12033"/>
                    <exon start="14219" stop="14362"/>
                    <exon start="15099" stop="15245"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1911</number_coding_nucleotides>
                  <number_encoded_amino_acids>637</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHIYIFLIENFVQFDSKIDGFYLQIHPISPDFELRIQGKIRLFDCVLGRMFNGMMDPELIRMAQEQMSRMSPADLARMQQQMMSNPDLMRMATEGMKNMRPDDLKVAAEQLKHTRPEDMAEIGKKMANASPEEIAAMSAQMDAQVKYEISGAEFLKKQGNDLHSQGKFKEALQKYSLAKKNLSSIPAAKGRSISLACSLNMMSCYLKTGQYDDCIKEGSEVLTYDDKNIKALYRRGQAYKELGQLEDAVSDLSKALEVSPDDDTIADVLRGVQERLVKEGGSSRRRGGLVIEEIIEEEPLVSSEAVDNSFPKSVASQPRESISPPKSQNEILGGPPLSSSESLEALKNDPESMRSFQNFISRADPDTLSALSGGNAKGIPPEMVKTASNVIGKMSPEELQRMVRLASSFQGENPFLKKGSSDSFGPGSVPPNVTPDMLKMATDMMGKMSPEDMQKMFTMASSLKEKSPVSAATTIDSNGSGQQSKPRDTRENFKVDDSTSASTSSQGFSDLNNGSYSSLSSSNVDLQEEMRNRMKDPAMRQMFSSMIKNMSPEMMSNMSEQFGVKLSQADAEKAQQAMSSLSPDDLEKMMKWADRIQRGVEGAKKTKNWLLGKPGMILAILVLLLAVILHKLGFIGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9453" e_stop="9531"/>
            <exon e_start="9648" e_stop="9718"/>
            <exon e_start="9833" e_stop="9876"/>
            <exon e_start="9968" e_stop="10175"/>
            <exon e_start="11472" e_stop="12033"/>
            <exon e_start="14219" e_stop="14362"/>
            <exon e_start="15099" e_stop="15515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.929" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="9453" e_stop="9531" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9532" i_stop="9647" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9648" e_stop="9718" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="9719" i_stop="9832" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="9833" e_stop="9876" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.929">
            <gDNA_intron_boundary i_start="9877" i_stop="9967" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9968" e_stop="10175" e_length="208"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10176" i_stop="11471" i_length="1296"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11472" e_stop="12033" e_length="562"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.905">
            <gDNA_intron_boundary i_start="12034" i_stop="14218" i_length="2185"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14219" e_stop="14362" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14363" i_stop="15098" i_length="736"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="15099" e_stop="15515" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9453" stop="9531"/>
              <exon start="9648" stop="9718"/>
              <exon start="9833" stop="9876"/>
              <exon start="9968" stop="10124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10021" stop="10175"/>
              <exon start="11472" stop="12033"/>
              <exon start="14219" stop="14249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10030" stop="10175"/>
              <exon start="11472" stop="11750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10139" stop="10175"/>
              <exon start="11472" stop="11987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10149" stop="10175"/>
              <exon start="11472" stop="12001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11705" stop="12033"/>
              <exon start="14219" stop="14287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11853" stop="12033"/>
              <exon start="14219" stop="14362"/>
              <exon start="15099" stop="15515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539696" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15103" stop="15515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283687" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA : GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG : GGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC : GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG : ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG : ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATG : ATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTTTGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTAAGAA</gDNA_template>
            <first_frame> G  F  D  I  *  R  Q  E  Y  Q  S  S  L  S  *  G  S  S  L  *  R  A  G  T  V  R   : R  C  S  V  *  F  E  *  S  T  *  S  L  A  *  *  *  H  Y  C  *  C  L  K  :  G  C  P  R  K  I  G  E  R  R  W  F  F  K  T :   *  R  R  I  G  Y  *  R  N  N  *  R  R  T  I  S  V  F  R  S  R  G  *  F  I  S  K  K  C  C  V  T  T  T  *  I  D  Q  P  S  *  E  S  K  *  N  S  W  W  A  S  L  I  K  F  R  V  F  G  G  F  K  K  *  P  R  I  H  E  :  I  L  P  E  F  Y  F  S  R  *  S  R  H  T  I  C  L  K  W  W  K  C  Q  R  H  T  S  *  N  G  K  D  S  L  Q  C  Y  W  Q  D  V  T  R  R  T  T  K  N  G  P  V  G  I  L  L  S  R  R  K  S  L  S  *  K  R  F  L  R  *  L  W  P  W  L  S  S  S  K  C  D  T  R  H  A  E  N  G  N  *  Y  D  G  Q  N  V  S  R  R  H  A  K  D  V  Y  N  G  I  F  I  K  R  E  K  S  S  I  G  C  N  N  Y  *  F  *  W  V  R  S  A  V  K  T  S  *  H  *  G  K  F  *  S  G  *  Q  Y  K  C  K  H  F  I  T  G  V  F  *  F  K  *  W  F  L  L  K  L  I  K  F  K  C  *  S  A  R  R  N  E  K  P  N  E  R  S  S  H  E  T   : D  V  L  F  N  D  *  K  Y  E  S  R  D  D  V  *  H  E  *  T  I  W  G  E  A  Q  S  G  R  C  R  E  S  S  T  G  N  V  I  F  V  T  R  *  L  G  K  D   : D  E  V  G  *  *  N  S  K  R  S  *  R  C  E  E  D  K  K  L  A  L  R  K  T  W  H  D  L  G  Y  T  C  A  T  F  S  S  H  P  S  Q  A  G  L  H  R  E  L  N  L  T  F  *  P  N  I  S  M  K  S  *  V  E  F  G  I  L  V  L  M  Y  L  K  W  G  Y  Q  W  V  N  L  G  W  R  *  H  *  L  L  L  L  Y  Y  A  F  F  F  F  L  Y  L  G  V  C  R  C  N  L  N  L  T  N  Y  L  V  R  C  F  A  V  E  L  A  V  S  R  *  S  F  G  K  T  T  L  Y  K  L  R  </first_frame>
            <second_frame>  V  L  T  Y  D  D  K  N  I  K  A  L  Y  R  R  G  Q  A  Y  K  E  L  G  Q  L  E  :  D  A  V  S  D  L  S  K  A  L  E  V  S  P  D  D  D  T  I  A  D  V  L  R :   G  V  Q  E  R  L  V  K  E  G  G  S  S  R   : R  R  G  G  L  V  I  E  E  I  I  E  E  E  P  L  V  S  S  E  A  V  D  N  S  F  P  K  S  V  A  S  Q  P  R  E  S  I  S  P  P  K  S  Q  N  E  I  L  G  G  P  P  L  S  S  S  E  S  L  E  A  L  K  N  D  P  E  S  M  R :   S  F  Q  N  F  I  S  R  A  D  P  D  T  L  S  A  L  S  G  G  N  A  K  G  I  P  P  E  M  V  K  T  A  S  N  V  I  G  K  M  S  P  E  E  L  Q  R  M  V  R  L  A  S  S  F  Q  G  E  N  P  F  L  K  K  G  S  S  D  S  F  G  P  G  S  V  P  P  N  V  T  P  D  M  L  K  M  A  T  D  M  M  G  K  M  S  P  E  D  M  Q  K  M  F  T  M  A  S  S  L  K  E  K  S  P  V  S  A  A  T  T  I  D  S  N  G  S  G  Q  Q  S  K  P  R  D  T  R  E  N  F  K  V  D  D  S  T  S  A  S  T  S  S  Q  G  F  S  D  L  N  N  G  S  Y  S  S  L  S  S  S  N  V  D  L  Q  E  E  M  R  N  R  M  K  D  P  A  M  R  Q  :  M  F  S  S  M  I  K  N  M  S  P  E  M  M  S  N  M  S  E  Q  F  G  V  K  L  S  Q  A  D  A  E  K  A  Q  Q  A  M  S  S  L  S  P  D  D  L  E  K  M  :  M  K  W  A  D  R  I  Q  R  G  V  E  G  A  K  K  T  K  N  W  L  L  G  K  P  G  M  I  L  A  I  L  V  L  L  L  A  V  I  L  H  K  L  G  F  I  G  S  *  T  *  R  S  S  Q  I  L  A  *  R  V  E  *  S  L  E  S  L  Y  *  C  T  *  N  G  D  I  S  G  *  T  L  V  G  D  D  I  S  Y  F  C  Y  I  T  L  F  F  S  F  F  I  W  V  F  V  D  V  T  *  T  *  Q  I  I  *  F  A  V  L  R  *  N  S  P  F  L  D  E  V  L  V  R  L  P  F  T  N  *  E </second_frame>
            <third_frame>   F  *  H  M  T  T  R  I  S  K  L  F  I  V  G  V  K  L  I  K  S  W  D  S  *  K :   M  Q  C  L  I  *  V  K  H  L  K  S  R  L  M  M  T  L  L  L  M  S  *   : G  V  S  K  K  D  W  *  K  K  V  V  L  Q  D  :  V  E  E  D  W  L  L  K  K  *  L  K  K  N  H  *  C  L  Q  K  P  W  I  I  H  F  Q  K  V  L  R  H  N  H  V  N  R  S  A  L  L  R  V  K  M  K  F  L  V  G  L  P  Y  Q  V  Q  S  L  W  R  L  *  K  M  T  P  N  P  *   : D  P  S  R  I  L  F  L  A  L  I  Q  T  H  Y  L  P  *  V  V  E  M  P  K  A  Y  L  L  K  W  *  R  Q  P  P  M  L  L  A  R  C  H  Q  K  N  Y  K  E  W  S  G  W  H  P  P  F  K  E  K  I  P  F  L  K  K  V  P  Q  I  A  L  A  L  A  Q  F  L  Q  M  *  H  P  T  C  *  K  W  Q  L  I  *  W  A  K  C  L  Q  K  T  C  K  R  C  L  Q  W  H  L  H  *  K  R  K  V  Q  Y  R  L  Q  Q  L  L  I  L  M  G  Q  V  S  S  Q  N  L  V  T  L  G  K  I  L  K  W  M  T  V  Q  V  Q  A  L  H  H  R  G  F  L  I  *  I  M  V  L  T  Q  A  Y  Q  V  Q  M  L  I  C  K  K  K  *  E  T  E  *  K  I  Q  P  *  D  R :   C  S  L  Q  *  L  K  I  *  V  Q  R  *  C  L  T  *  V  N  N  L  G  *  S  S  V  R  Q  M  Q  R  K  L  N  R  Q  C  H  L  C  H  Q  M  T  W  K  R  * :   *  S  G  L  I  E  F  K  E  E  L  K  V  R  R  R  Q  K  I  G  S  *  E  N  L  A  *  S  W  L  Y  L  C  Y  F  *  Q  S  S  F  T  S  W  A  S  S  G  A  K  L  D  V  L  A  K  Y  *  H  E  E  L  S  R  V  W  N  P  C  T  N  V  L  E  M  G  I  S  V  G  K  P  W  L  E  M  T  L  V  T  F  V  I  L  R  F  F  F  L  S  L  F  G  C  L  *  M  *  L  K  L  D  K  L  F  S  S  L  F  C  G  R  T  R  R  F  *  M  K  F  W  *  D  Y  P  L  Q  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9454" stop="9531"/>
                    <exon start="9648" stop="9718"/>
                    <exon start="9833" stop="9876"/>
                    <exon start="9968" stop="10175"/>
                    <exon start="11472" stop="12033"/>
                    <exon start="14219" stop="14362"/>
                    <exon start="15099" stop="15245"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTYDDKNIKALYRRGQAYKELGQLEDAVSDLSKALEVSPDDDTIADVLRGVQERLVKEGGSSRRRGGLVIEEIIEEEPLVSSEAVDNSFPKSVASQPRESISPPKSQNEILGGPPLSSSESLEALKNDPESMRSFQNFISRADPDTLSALSGGNAKGIPPEMVKTASNVIGKMSPEELQRMVRLASSFQGENPFLKKGSSDSFGPGSVPPNVTPDMLKMATDMMGKMSPEDMQKMFTMASSLKEKSPVSAATTIDSNGSGQQSKPRDTRENFKVDDSTSASTSSQGFSDLNNGSYSSLSSSNVDLQEEMRNRMKDPAMRQMFSSMIKNMSPEMMSNMSEQFGVKLSQADAEKAQQAMSSLSPDDLEKMMKWADRIQRGVEGAKKTKNWLLGKPGMILAILVLLLAVILHKLGFIGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="16497" PGL_stop="16057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16497" e_stop="16057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="16497" e_stop="16057" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16497" stop="16065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16497" stop="16065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16496" stop="16057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16495" stop="16076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAAGTAATGAG</gDNA_template>
            <first_frame> R  R  R  K  R  R  I  H  G  S  R  *  R  I  I  R  M  F  T  *  V  P  T  M  K  T  T  A  I  G  R  N  L  T  V  K  T  T  T  E  Y  G  K  P  P  I  L  K  R  K  C  G  T  G  S  M  E  L  D  F  G  G  L  Y  H  R  E  R  R  T  *  H  G  I  I  K  I  S  K  D  L  K  C  N  Y  N  Y  N  *  E  E  K  K  G  E  R  D  R  N  *  R  L  M  D  L  Y  I  V  Y  F  A  Q  K  T  L  G  G  V  I  I  H  *  T  R  F  L  G  G  H  T  V  D  F  F  F  L  N  I  K  K  I  P  *  R  S  N  E </first_frame>
            <second_frame>  E  E  E  R  G  G  F  M  E  V  D  E  E  *  *  E  C  L  P  R  C  L  R  *  R  R  R  R  S  G  E  I  *  R  *  K  R  R  R  S  T  G  S  R  R  F  *  N  G  N  V  G  P  V  L  W  S  W  I  L  E  D  S  I  T  E  R  G  G  L  S  M  A  *  S  K  *  V  R  T  *  N  A  I  I  I  I  I  K  K  K  K  K  V  K  E  T  E  I  E  D  *  W  I  C  T  L  C  I  L  P  K  K  R  W  V  E  *  *  F  I  E  H  G  F  *  V  D  T  P  L  I  F  S  F  L  I  *  K  K  S  L  R  E  V  M   </second_frame>
            <third_frame>   K  K  K  E  E  D  S  W  K  S  M  K  N  N  K  N  V  Y  L  G  A  Y  D  E  D  D  G  D  R  E  K  F  D  G  E  N  D  D  G  V  R  E  A  A  D  F  E  T  E  M  W  D  R  F  Y  G  A  G  F  W  R  T  L  S  Q  R  E  E  D  L  A  W  H  N  Q  N  K  *  G  L  K  M  Q  L  *  L  *  L  R  R  K  K  R  *  K  R  Q  K  L  K  I  N  G  F  V  H  C  V  F  C  P  K  N  V  G  W  S  N  N  S  L  N  T  V  F  R  W  T  H  R  *  F  F  L  S  *  Y  K  K  N  P  L  E  K  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16495" stop="16262"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKEEDSWKSMKNNKNVYLGAYDEDDGDREKFDGENDDGVREAADFETEMWDRFYGAGFWRTLSQREEDLAWHNQNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19689" PGL_stop="22171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19689" e_stop="19781"/>
            <exon e_start="20500" e_stop="20631"/>
            <exon e_start="20713" e_stop="20759"/>
            <exon e_start="21722" e_stop="21784"/>
            <exon e_start="21882" e_stop="21990"/>
            <exon e_start="22079" e_stop="22171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.516" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19689" e_stop="19781" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.980">
            <gDNA_intron_boundary i_start="19782" i_stop="20499" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20500" e_stop="20631" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.516" acc_prob="0.893">
            <gDNA_intron_boundary i_start="20632" i_stop="20712" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20713" e_stop="20759" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20760" i_stop="21721" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21722" e_stop="21784" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="21785" i_stop="21881" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21882" e_stop="21990" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21991" i_stop="22078" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22079" e_stop="22171" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19689" stop="19781"/>
              <exon start="20500" stop="20631"/>
              <exon start="20713" stop="20759"/>
              <exon start="21722" stop="21784"/>
              <exon start="21882" stop="21990"/>
              <exon start="22079" stop="22138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19691" stop="19781"/>
              <exon start="20500" stop="20631"/>
              <exon start="20713" stop="20759"/>
              <exon start="21722" stop="21784"/>
              <exon start="21882" stop="21990"/>
              <exon start="22079" stop="22141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19701" stop="19781"/>
              <exon start="20500" stop="20631"/>
              <exon start="20713" stop="20759"/>
              <exon start="21722" stop="21784"/>
              <exon start="21882" stop="21990"/>
              <exon start="22079" stop="22171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAG : ATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACA : GTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATG : GTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAG : CCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCAT : TTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCGGCTGCCATGGGAAGGGCACGGCACATTGCT</gDNA_template>
            <first_frame> S  S  S  L  F  L  S  V  V  T  S  Q  K  T  Q  I  H  L  I  N  L  I  L  P  I  S  *  S  F  F  E  :  M  E  E  G  K  M  S  E  D  I  L  T  S  A  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  D  E  F  S  D  S  D  P  S  T  :  V  T  G  C  K  H  E  F  H  L  Q  C  I  L  E  W :   C  Q  R  S  S  Q  C  P  M  C  W  Q  P  L  S  L  K  D  P  N  S :   Q  E  L  L  D  A  V  E  H  E  R  N  I  R  M  N  P  P  R  N  T  T  I  F  H  H  P  T  L  G  D  F  E  L  Q  H  :  L  P  V  S  A  T  D  S  E  L  E  E  R  I  I  Q  H  L  A  A  A  A  A  M  G  R  A  R  H  I  A </first_frame>
            <second_frame>  L  P  R  F  F  F  L  W  L  P  L  K  K  P  K  F  I  *  S  I  *  S  S  L  L  V  E  A  F  L  R :   W  R  R  A  R  C  L  R  I  F  *  L  R  L  Q  H  L  W  K  V  E  F  R  M  P  A  M  M  L  A  A  Y  V  L  T  N  F  L  I  V  I  L  L  Q :   *  Q  A  A  S  M  S  S  I  F  S  V  F  *  N   : G  V  K  E  A  P  S  A  P  C  V  G  N  L  S  A  *  K  T  P  T   : A  R  N  C  W  M  Q  *  S  T  R  G  T  S  G  *  I  L  L  E  T  P  Q  S  S  T  I  Q  L  *  E  I  L  S  C  S  I :   Y  R  *  A  Q  L  T  L  S  L  K  S  V  S  F  S  T  *  L  L  R  L  P  W  E  G  H  G  T  L   </second_frame>
            <third_frame>   F  L  A  F  S  F  C  G  Y  L  S  K  N  P  N  S  S  D  Q  F  D  P  P  Y  *  L  K  L  F  *   : D  G  G  G  Q  D  V  *  G  Y  F  D  F  G  C  S  I  C  G  R  W  N  S  G  C  L  R  *  C  L  Q  H  M  S  *  R  I  F  *  *  *  S  F  Y   : S  D  R  L  Q  A  *  V  P  S  S  V  Y  S  R  M  :  V  S  K  K  L  P  V  P  H  V  L  A  T  S  Q  L  E  R  P  Q  Q  :  P  G  I  V  G  C  S  R  A  R  E  E  H  Q  D  E  S  S  *  K  H  H  N  L  P  P  S  N  F  R  R  F  *  V  A  A   : F  T  G  K  R  N  *  L  *  A  *  R  A  Y  H  S  A  L  S  C  C  G  C  H  G  K  G  T  A  H  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19770" stop="19781"/>
                    <exon start="20500" stop="20631"/>
                    <exon start="20713" stop="20759"/>
                    <exon start="21722" stop="21784"/>
                    <exon start="21882" stop="21990"/>
                    <exon start="22079" stop="22171"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFEMEEGKMSEDILTSAAAFVEGGIQDACDDACSICLDEFSDSDPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPLSLKDPNSQELLDAVEHERNIRMNPPRNTTIFHHPTLGDFELQHLPVSATDSELEERIIQHLAAAAAMGRARHIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="22222" PGL_stop="25077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22222" e_stop="22470"/>
            <exon e_start="22857" e_stop="22964"/>
            <exon e_start="23078" e_stop="23415"/>
            <exon e_start="24781" e_stop="25077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.895" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22222" e_stop="22470" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.895" acc_prob="0.932">
            <gDNA_intron_boundary i_start="22471" i_stop="22856" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="22857" e_stop="22964" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22965" i_stop="23077" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23078" e_stop="23415" e_length="338"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23416" i_stop="24780" i_length="1365"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="24781" e_stop="25077" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22222" stop="22470"/>
              <exon start="22857" stop="22964"/>
              <exon start="23078" stop="23122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22894" stop="22964"/>
              <exon start="23078" stop="23415"/>
              <exon start="24781" stop="25077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22894" stop="22964"/>
              <exon start="23078" stop="23415"/>
              <exon start="24781" stop="25073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGGTGTTTTCAACTCATCCAAATGCTCCTGCTGCTGCTGCTGTTCCTGCTTCATCTTCTAACCAGAGGAGTGGGGGTGAACCCACTCCTGAAGTCTCGGTTTCTGGTCAGGATTCTCCAGTTATTGCTGTTGGAGAAGGTTCGGGACAACTACTTTCTCAACCTCCTTTTCAAGCTGATGAGGTTTCTGCCTCTGGGTCAGGATCAAATACTGCTGTTAATCAACTTGGGACTTCGTCACATAATAG : GAGGAATCCTTCTCAATCTTCTACTAACAATCAAGACAGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAG : ATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAG : GTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTTTTCTTGGGATTCACTAGCACCACAT</gDNA_template>
            <first_frame> S  G  V  F  N  S  S  K  C  S  C  C  C  C  C  S  C  F  I  F  *  P  E  E  W  G  *  T  H  S  *  S  L  G  F  W  S  G  F  S  S  Y  C  C  W  R  R  F  G  T  T  T  F  S  T  S  F  S  S  *  *  G  F  C  L  W  V  R  I  K  Y  C  C  *  S  T  W  D  F  V  T  *  *  :  E  E  S  F  S  I  F  Y  *  Q  S  R  Q  S  R  T  I  R  F  S  V  F  F  R  F  Y  E  V  S  V  *  C  N  V  N  E  :  M  Q  R  I  F  N  Q  E  F  K  G  L  E  G  E  I  F  L  S  Q  Q  F  N  I  R  Q  C  S  R  T  *  E  *  S  E  G  S  C  C  H  C  I  T  H  D  G  P  S  G  N  Y  R  *  Q  N  Q  F  C  *  I  K  Y  T  G  H  Y  F  T  Y  Q  R  C  *  A  A  Y  T  *  E  *  W  Y  S  F  F  K  *  G  *  *  A  I  P  V  C  C  K  W  F  K  L  K  F  Y  M  S  *  S  I  F  S  S  R :   *  I  L  L  P  A  S  M  I  Y  G  A  H  L  T  G  C  G  E  T  L  I  L  *  S  A  T  L  N  V  K  I  *  R  D  G  C  R  H  F  V  Q  T  M  Y  M  Y  D  Y  I  D  V  N  *  P  I  L  G  S  S  T  D  D  F  N  C  S  L  *  S  Y  M  K  P  P  F  I  I  F  I  D  I  A  G  Q  L  I  D  Q  G  F  L  G  I  H  *  H  H   </first_frame>
            <second_frame>  L  V  F  S  T  H  P  N  A  P  A  A  A  A  V  P  A  S  S  S  N  Q  R  S  G  G  E  P  T  P  E  V  S  V  S  G  Q  D  S  P  V  I  A  V  G  E  G  S  G  Q  L  L  S  Q  P  P  F  Q  A  D  E  V  S  A  S  G  S  G  S  N  T  A  V  N  Q  L  G  T  S  S  H  N  R :   R  N  P  S  Q  S  S  T  N  N  Q  D  R  A  G  P  S  D  F  Q  S  F  S  D  S  M  K  S  R  F  S  A  M  S  M  R :   C  K  E  S  L  T  K  S  S  R  G  W  K  E  R  F  F  S  R  N  S  S  T  S  D  N  V  P  E  P  R  N  E  V  R  A  A  V  A  T  V  S  H  M  M  D  H  L  E  T  T  D  S  R  T  S  S  A  E  S  N  I  L  D  T  T  L  P  I  R  D  A  E  Q  H  I  P  E  S  D  G  I  H  S  L  N  E  D  S  R  Q  S  P  C  A  A  S  G  S  N  *  S  F  I  *  V  E  A  F  S  L  Q   : G  R  Y  S  C  Q  H  R  *  Y  M  V  R  I  L  L  G  V  V  K  H  *  S  F  E  V  Q  H  *  M  L  R  Y  R  G  M  D  V  V  I  L  S  K  P  C  I  C  M  I  I  *  M  *  I  D  P  F  W  V  V  V  L  M  T  S  T  V  L  F  N  L  T  *  N  P  P  S  *  S  S  *  T  L  L  D  S  *  L  T  K  V  F  L  G  F  T  S  T  T  </second_frame>
            <third_frame>   W  C  F  Q  L  I  Q  M  L  L  L  L  L  L  F  L  L  H  L  L  T  R  G  V  G  V  N  P  L  L  K  S  R  F  L  V  R  I  L  Q  L  L  L  L  E  K  V  R  D  N  Y  F  L  N  L  L  F  K  L  M  R  F  L  P  L  G  Q  D  Q  I  L  L  L  I  N  L  G  L  R  H  I  I   : G  G  I  L  L  N  L  L  L  T  I  K  T  E  P  D  H  Q  I  F  S  L  F  Q  I  L  *  S  L  G  L  V  Q  C  Q  *   : D  A  K  N  L  *  P  R  V  Q  G  V  G  R  R  D  F  S  L  A  T  V  Q  H  Q  T  M  F  P  N  L  G  M  K  *  G  Q  L  L  P  L  Y  H  T  *  W  T  I  W  K  L  Q  I  A  E  P  V  L  L  N  Q  I  Y  W  T  L  L  Y  L  S  E  M  L  S  S  I  Y  L  R  V  M  V  F  I  L  *  M  R  I  V  G  N  P  R  V  L  Q  V  V  Q  T  E  V  L  Y  E  L  K  H  F  L  F  K  :  V  D  T  L  A  S  I  D  D  I  W  C  A  S  Y  W  V  W  *  N  I  N  P  L  K  C  N  T  E  C  *  D  I  E  G  W  M  S  S  F  C  P  N  H  V  Y  V  *  L  Y  R  C  K  L  T  H  S  G  *  *  Y  *  *  L  Q  L  F  S  L  I  L  H  E  T  P  L  H  N  L  H  R  H  C  W  T  V  N  *  P  R  F  S  W  D  S  L  A  P  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22223" stop="22470"/>
                    <exon start="22857" stop="22964"/>
                    <exon start="23078" stop="23381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVFSTHPNAPAAAAVPASSSNQRSGGEPTPEVSVSGQDSPVIAVGEGSGQLLSQPPFQADEVSASGSGSNTAVNQLGTSSHNRRNPSQSSTNNQDRAGPSDFQSFSDSMKSRFSAMSMRCKESLTKSSRGWKERFFSRNSSTSDNVPEPRNEVRAAVATVSHMMDHLETTDSRTSSAESNILDTTLPIRDAEQHIPESDGIHSLNEDSRQSPCAASGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="28342" PGL_stop="25598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28342" e_stop="28298"/>
            <exon e_start="27361" e_stop="27253"/>
            <exon e_start="26948" e_stop="26871"/>
            <exon e_start="26759" e_stop="26726"/>
            <exon e_start="26625" e_stop="26557"/>
            <exon e_start="26049" e_stop="25598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.623" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28342" e_stop="28298" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27361" e_stop="27253" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.890">
            <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26948" e_stop="26871" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.623">
            <gDNA_intron_boundary i_start="26870" i_stop="26760" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26759" e_stop="26726" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.969">
            <gDNA_intron_boundary i_start="26725" i_stop="26626" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26625" e_stop="26557" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.984">
            <gDNA_intron_boundary i_start="26556" i_stop="26050" i_length="507"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26049" e_stop="25598" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28342" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28337" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28337" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28337" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28333" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28333" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28332" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28329" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28327" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28323" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28317" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26871"/>
              <exon start="26759" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26741" stop="26726"/>
              <exon start="26625" stop="26557"/>
              <exon start="26049" stop="25828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26601" stop="26557"/>
              <exon start="26049" stop="25678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26013" stop="25686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25996" stop="25692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGGGAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG : AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA : GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA : AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG : CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG : AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGAC</gDNA_template>
            <first_frame> L  G  K  K  K  K  T  P  L  S  S  K  L  A  M  :  S  F  *  R  P  N  V  *  *  T  V  K  S  H  *  F  L  N  T  S  M  S  R  S  S  R  C  L  M  I  Q  Q  I  R  F  R   : R  Y  L  K  S  R  C  N  M  *  S  V  S  V  G  T  R  T  L  M  L  L  D  K  L  E   : K  F  L  V  G  I  H  L  L  N  S  S :   S  V  F  L  G  I  F  A  P  K  L  L  R  K  V  L  P  W  S  H  P  S  R :   I  E  D  V  H  L  T  R  K  Q  L  R  K  C  *  L  T  F  P  *  *  R  N  S  S  S  P  I  I  V  L  V  L  L  C  C  S  S  L  C  F  R  T  C  T  S  I  C  L  L  V  A  A  L  *  C  *  L  G  S  G  I  M  L  K  T  L  S  V  D  *  R  R  K  L  S  L  D  P  F  F  S  F  W  *  L  V  V  T  T  I  L  W  C  T  G  *  I  I  V  M  T  Y  L  V  C  R  F  A  F  V  K  D  K  *  E  H  T  L  I  G  I  L  A  M  G  P  E  G  L  F  S  L  S  R  G  D  L  E  N  Q  S  M  E  N  L  *  Y  W  *  </first_frame>
            <second_frame>  W  G  R  R  R  K  R  R  *  A  Q  N  W  R  * :   V  F  E  G  Q  M  S  N  E  L  *  S  R  I  D  S  *  T  Q  V  *  A  D  P  A  D  V  *  *  S  N  K  S  D  F  A  :  G  I  *  K  V  A  A  I  C  E  A  F  Q  S  V  Q  E  P  *  C  C  *  T  S  S  R  :  N  S  *  *  V  S  T  C  *  I  R   : A  L  C  S  W  E  S  L  P  R  N  C  *  G  R  Y  C  H  G  P  I  H  Q   : E  *  R  T  C  T  *  R  G  S  N  *  E  N  A  N  *  P  F  P  N  K  E  I  R  V  V  L  L  *  C  L  S  C  Y  A  A  A  V  S  A  S  E  P  V  P  P  Y  V  Y  *  *  Q  L  C  N  A  N  W  A  L  A  L  C  *  K  L  Y  L  L  I  E  E  E  N  S  L  W  T  L  F  F  L  F  G  S  W  L  *  P  Q  S  F  G  A  R  A  K  S  L  *  *  H  T  W  F  V  V  S  L  L  *  K  T  N  K  S  I  P  *  S  E  Y  *  L  W  V  L  R  V  F  F  L  C  Q  E  V  T  S  R  I  N  L  W  K  I  C  S  T  G  D </second_frame>
            <third_frame>   G  E  E  E  E  N  A  A  E  L  K  I  G  D   : E  F  L  K  A  K  C  L  M  N  C  E  V  A  L  I  L  E  H  K  Y  E  Q  I  Q  Q  M  S  D  D  P  T  N  Q  I  S  Q :   V  F  E  K  S  L  Q  Y  V  K  R  F  S  R  Y  K  N  P  D  A  V  R  Q  A  R  E :   I  L  S  R  Y  P  L  A  E  F  E  :  L  C  V  L  G  N  L  C  P  E  T  V  E  E  G  I  A  M  V  P  S  I  K  :  N  R  G  R  A  L  D  E  E  A  I  E  K  M  L  T  D  L  S  L  I  K  K  F  E  *  S  Y  Y  S  A  C  L  A  M  L  Q  Q  S  L  L  P  N  L  Y  L  H  M  F  I  S  S  S  S  V  M  L  I  G  L  W  H  Y  V  E  N  F  I  C  *  L  K  K  K  T  L  S  G  P  F  F  F  F  L  V  A  G  C  N  H  N  P  L  V  H  G  L  N  H  C  N  D  I  P  G  L  S  F  R  F  C  E  R  Q  I  R  A  Y  L  D  R  N  I  S  Y  G  S  *  G  S  F  F  S  V  K  R  *  P  R  E  S  I  Y  G  K  F  V  V  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28340" stop="28298"/>
                    <exon start="27361" stop="27253"/>
                    <exon start="26948" stop="26871"/>
                    <exon start="26759" stop="26726"/>
                    <exon start="26625" stop="26557"/>
                    <exon start="26049" stop="25972"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQIQQMSDDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQAREILSRYPLAEFELCVLGNLCPETVEEGIAMVPSIKNRGRALDEEAIEKMLTDLSLIKKFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28334" e_stop="28298"/>
            <exon e_start="27361" e_stop="27253"/>
            <exon e_start="26948" e_stop="26625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28334" e_stop="28298" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="28297" i_stop="27362" i_length="936"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27361" e_stop="27253" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.890">
            <gDNA_intron_boundary i_start="27252" i_stop="26949" i_length="304"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26948" e_stop="26625" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28334" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28334" stop="28298"/>
              <exon start="27361" stop="27253"/>
              <exon start="26948" stop="26750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG : AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA : GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGC</gDNA_template>
            <first_frame> E  E  E  N  A  A  E  L  K  I  G  D   : E  F  L  K  A  K  C  L  M  N  C  E  V  A  L  I  L  E  H  K  Y  E  Q  I  Q  Q  M  S  D  D  P  T  N  Q  I  S  Q :   V  F  E  K  S  L  Q  Y  V  K  R  F  S  R  Y  K  N  P  D  A  V  R  Q  A  R  E  Y  P  P  A  C  G  L  D  *  K  T  S  V  F  L  F  D  I  Y  E  F  T  M  N  S  P  F  I  E  C  K  P  *  L  *  F  R  I  L  S  R  Y  P  L  A  E  F  E  V  G  I  C  S  L  N  F  L  I  C  F  I  L  V  T  T  I  N  I  F  V  E  T  A  V  Y  K  F  E  Y  F  A   </first_frame>
            <second_frame>  K  K  K  T  P  L  S  S  K  L  A  M  :  S  F  *  R  P  N  V  *  *  T  V  K  S  H  *  F  L  N  T  S  M  S  R  S  S  R  C  L  M  I  Q  Q  I  R  F  R   : R  Y  L  K  S  R  C  N  M  *  S  V  S  V  G  T  R  T  L  M  L  L  D  K  L  E  S  I  L  L  P  V  A  *  I  E  K  L  L  Y  F  F  L  I  F  M  N  L  Q  *  I  V  L  L  *  N  V  N  L  N  F  D  S  E  F  L  V  G  I  H  L  L  N  S  R  *  E  S  V  L  *  I  S  *  F  V  S  Y  L  *  P  P  S  I  S  S  W  K  L  Q  F  I  S  L  N  I  L  Q  </second_frame>
            <third_frame>   R  R  K  R  R  *  A  Q  N  W  R  * :   V  F  E  G  Q  M  S  N  E  L  *  S  R  I  D  S  *  T  Q  V  *  A  D  P  A  D  V  *  *  S  N  K  S  D  F  A  :  G  I  *  K  V  A  A  I  C  E  A  F  Q  S  V  Q  E  P  *  C  C  *  T  S  S  R  V  S  S  C  L  W  L  R  L  K  N  F  C  I  S  F  *  Y  L  *  I  Y  N  E  *  S  F  Y  R  M  *  T  L  T  L  I  Q  N  S  *  *  V  S  T  C  *  I  R  G  R  N  L  F  F  E  F  P  N  L  F  H  T  C  N  H  H  Q  Y  L  R  G  N  C  S  L  *  V  *  I  F  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28334" stop="28298"/>
                    <exon start="27361" stop="27253"/>
                    <exon start="26948" stop="26843"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQIQQMSDDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQAREYPPACGLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="28835" PGL_stop="33550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28835" e_stop="28960"/>
            <exon e_start="29672" e_stop="29803"/>
            <exon e_start="29882" e_stop="29928"/>
            <exon e_start="30988" e_stop="31050"/>
            <exon e_start="31146" e_stop="31254"/>
            <exon e_start="31349" e_stop="31722"/>
            <exon e_start="32131" e_stop="32235"/>
            <exon e_start="32331" e_stop="32668"/>
            <exon e_start="33324" e_stop="33550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.780" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.429" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28835" e_stop="28960" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28961" i_stop="29671" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29672" e_stop="29803" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.441" acc_prob="0.988">
            <gDNA_intron_boundary i_start="29804" i_stop="29881" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29882" e_stop="29928" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29929" i_stop="30987" i_length="1059"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30988" e_stop="31050" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="31051" i_stop="31145" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31146" e_stop="31254" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.980">
            <gDNA_intron_boundary i_start="31255" i_stop="31348" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="31349" e_stop="31722" e_length="374"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31723" i_stop="32130" i_length="408"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32131" e_stop="32235" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.780" acc_prob="0.962">
            <gDNA_intron_boundary i_start="32236" i_stop="32330" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32331" e_stop="32668" e_length="338"/>
          </exon>
          <intron i_serial="8" don_prob="0.429" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32669" i_stop="33323" i_length="655"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33324" e_stop="33550" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28835" stop="28960"/>
              <exon start="29672" stop="29803"/>
              <exon start="29882" stop="29928"/>
              <exon start="30988" stop="31050"/>
              <exon start="31146" stop="31164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28874" stop="28960"/>
              <exon start="29672" stop="29803"/>
              <exon start="29882" stop="29928"/>
              <exon start="30988" stop="31050"/>
              <exon start="31146" stop="31217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28892" stop="28960"/>
              <exon start="29672" stop="29803"/>
              <exon start="29882" stop="29928"/>
              <exon start="30988" stop="31050"/>
              <exon start="31146" stop="31254"/>
              <exon start="31349" stop="31548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28894" stop="28960"/>
              <exon start="29672" stop="29803"/>
              <exon start="29882" stop="29928"/>
              <exon start="30988" stop="31050"/>
              <exon start="31146" stop="31254"/>
              <exon start="31349" stop="31722"/>
              <exon start="32131" stop="32156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28912" stop="28960"/>
              <exon start="29672" stop="29803"/>
              <exon start="29882" stop="29928"/>
              <exon start="30988" stop="31050"/>
              <exon start="31146" stop="31254"/>
              <exon start="31349" stop="31722"/>
              <exon start="32131" stop="32227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="31050"/>
              <exon start="31146" stop="31254"/>
              <exon start="31349" stop="31576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32156" stop="32235"/>
              <exon start="32331" stop="32668"/>
              <exon start="33324" stop="33502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32351" stop="32668"/>
              <exon start="33324" stop="33550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAAGTCTTCTTCTTCCTCTTTGTTCTTCCACTATTTTCATTTCTGTGGTTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG : ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT : GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG : GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG : CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT : TTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCAATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCAAGCTGATCAGGTTCCTGCCTCTGGGTCAGGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAG : GAATCCTCCTCAAGCTTCTTCTAGCAATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATGTCAATGAG : ATACAAAGAATCTTTAACAAAGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCTGTTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAG : GTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTCCTGTTCTGGATAGTACTGATTAAATATAACTGTTTCCTTGAAATTTTA</gDNA_template>
            <first_frame> L  K  V  F  F  F  L  F  V  L  P  L  F  S  F  L  W  F  T  F  Q  N  P  K  F  S  *  S  T  Y  S  L  I  C  H  I  H  *  S  F  F  K  :  M  E  E  G  K  M  S  E  D  I  L  T  S  A  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  E  A  F  C  D  S  D  P  S  T  :  V  T  G  C  K  H  E  F  H  L  Q  C  I  L  E  W :   C  Q  R  S  S  Q  C  P  M  C  W  Q  P  L  S  L  K  D  P  N  S :   Q  E  L  L  D  A  V  E  H  E  R  N  I  R  M  N  P  P  R  N  T  T  I  F  H  H  P  T  L  G  D  F  E  L  Q  H  :  L  P  S  S  A  T  D  S  E  L  E  E  R  I  I  Q  H  L  A  A  A  A  A  M  G  R  T  R  H  L  A  R  R  E  G  P  R  G  R  S  S  A  Q  G  R  P  Q  F  L  V  F  S  T  H  P  N  A  P  P  L  A  G  A  S  S  S  T  Q  R  S  G  G  E  P  T  P  E  D  L  V  S  G  Q  D  S  A  I  V  S  G  Q  P  V  T  Q  P  S  S  F  Q  A  D  Q  V  P  A  S  G  S  G  S  N  A  A  V  N  Q  P  G  T  S  L  I  N  R :   N  P  P  Q  A  S  S  S  N  Q  D  R  V  G  P  S  D  F  Q  S  F  S  D  S  I  K  S  R  F  S  A  M  S  M  R :   Y  K  E  S  L  T  K  S  S  R  G  W  K  E  K  L  F  S  R  N  S  S  T  P  D  H  C  A  E  S  R  N  E  V  S  A  A  V  A  T  V  S  N  L  M  E  H  L  E  T  T  D  S  R  A  S  S  A  E  S  N  I  S  E  D  T  L  P  V  G  H  A  E  Q  H  A  P  V  I  D  N  T  H  S  L  N  E  D  N  R  Q  A  P  C  A  A  S  S  G  S  S  *  V  L  K  L  I  A  L  S  L  K   : G  G  Y  S  C  Q  H  Q  *  Y  M  T  A  F  Y  W  I  C  G  E  R  *  Y  V  E  V  H  H  *  M  *  P  A  S  I  K  *  E  Y  G  S  H  H  L  V  Q  A  V  Y  M  Y  E  M  I  L  *  M  *  I  V  L  F  W  I  V  L  I  K  Y  N  C  F  L  E  I  L </first_frame>
            <second_frame>  *  K  S  S  S  S  S  L  F  F  H  Y  F  H  F  C  G  L  P  F  K  T  Q  N  S  P  D  Q  L  I  L  *  S  A  I  F  I  E  V  S  L  R :   W  R  R  A  R  C  L  R  I  F  *  L  R  L  R  H  L  W  K  V  E  F  R  M  L  A  M  M  L  A  A  Y  A  L  K  H  F  V  I  V  I  L  L  L :   *  L  V  A  S  M  S  S  I  F  N  A  F  L  N   : G  V  R  E  A  P  S  A  P  C  V  G  S  L  S  A  *  K  T  L  T   : A  R  S  C  W  M  Q  *  S  T  S  V  T  S  G  *  I  L  L  E  T  P  Q  S  F  T  I  Q  L  *  E  I  L  N  C  S  I :   Y  R  Q  V  Q  Q  I  L  S  L  K  S  V  S  F  S  T  *  L  L  P  L  P  W  E  G  H  A  T  L  P  E  G  K  V  R  E  V  G  H  Q  L  K  A  V  P  N  F  W  C  F  Q  L  I  Q  M  L  L  L  L  L  V  L  H  L  L  L  R  G  V  G  V  N  P  L  L  K  T  W  Y  L  V  R  I  L  Q  L  F  L  D  S  Q  L  L  N  H  P  L  F  K  L  I  R  F  L  P  L  G  Q  D  Q  M  L  L  L  I  S  L  G  L  P  *  S  I   : G  I  L  L  K  L  L  L  A  I  K  T  E  S  D  H  Q  I  F  S  L  F  Q  I  L  *  S  L  D  L  V  Q  C  Q  *   : D  T  K  N  L  *  Q  R  V  Q  G  V  G  K  R  N  Y  S  L  V  I  V  Q  H  Q  T  I  V  P  N  L  G  M  K  S  V  Q  L  L  P  L  Y  Q  T  *  W  S  I  W  K  Q  L  I  A  E  P  V  L  L  N  Q  I  Y  Q  R  T  H  Y  L  S  A  M  L  S  S  M  H  L  *  L  I  I  P  I  L  *  M  R  I  I  G  K  P  R  V  L  Q  V  L  V  R  A  K  F  *  N  S  *  H  F  L  L  K  :  V  D  T  P  V  N  I  S  N  I  *  L  H  F  I  G  S  V  V  N  A  S  T  L  K  F  I  T  E  C  S  L  L  Q  *  N  R  N  M  D  P  I  T  W  S  K  P  Y  I  C  M  K  *  Y  Y  R  C  K  L  S  C  S  G  *  Y  *  L  N  I  T  V  S  L  K  F   </second_frame>
            <third_frame>   K  S  L  L  L  P  L  C  S  S  T  I  F  I  S  V  V  Y  L  S  K  P  K  I  L  L  I  N  L  F  F  D  L  P  Y  S  L  K  F  L  *   : D  G  G  G  Q  D  V  *  G  Y  F  N  F  G  C  G  I  C  G  R  W  N  S  G  C  L  R  *  C  L  Q  H  M  P  *  S  I  L  *  *  *  S  F  Y   : C  D  W  L  Q  A  *  V  P  S  S  M  H  S  *  M  :  V  S  E  K  L  P  V  P  H  V  L  A  A  S  Q  L  E  R  P  *  Q  :  P  G  V  V  G  C  S  R  A  R  A  *  H  Q  D  E  S  S  *  K  H  H  N  L  S  P  S  N  F  R  R  F  *  T  A  A   : F  T  V  K  C  N  R  F  *  A  *  R  A  Y  H  S  A  L  S  C  C  R  C  H  G  K  D  T  P  P  C  Q  K  G  R  S  A  R  *  V  I  S  S  R  P  S  P  I  S  G  V  F  N  S  S  K  C  S  S  S  C  W  C  F  I  F  Y  S  E  E  W  G  *  T  H  S  *  R  L  G  I  W  S  G  F  C  N  C  F  W  T  A  S  Y  S  T  I  L  F  S  S  *  S  G  S  C  L  W  V  R  I  K  C  C  C  *  S  A  W  D  F  L  N  Q  *  :  E  S  S  S  S  F  F  *  Q  S  R  Q  S  R  T  I  R  F  S  V  F  F  R  F  Y  K  V  *  I  *  C  N  V  N  E  :  I  Q  R  I  F  N  K  E  F  K  G  L  E  R  E  I  I  L  S  *  *  F  N  T  R  P  L  C  R  I  *  E  *  S  Q  C  S  C  C  H  C  I  K  P  D  G  A  F  G  N  N  *  *  Q  S  Q  F  C  *  I  K  Y  I  R  G  H  I  T  C  R  P  C  *  A  A  C  T  C  D  *  *  Y  P  F  F  E  *  G  *  *  A  S  P  V  C  C  K  F  W  F  E  L  S  F  E  T  H  S  T  F  S  *  R :   W  I  L  L  S  T  S  V  I  Y  D  C  I  L  L  D  L  W  *  T  L  V  R  *  S  S  S  L  N  V  A  C  F  N  K  I  G  I  W  I  P  S  L  G  P  S  R  I  Y  V  *  N  D  T  I  D  V  N  C  P  V  L  D  S  T  D  *  I  *  L  F  P  *  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28949" stop="28960"/>
                    <exon start="29672" stop="29803"/>
                    <exon start="29882" stop="29928"/>
                    <exon start="30988" stop="31050"/>
                    <exon start="31146" stop="31254"/>
                    <exon start="31349" stop="31722"/>
                    <exon start="32131" stop="32235"/>
                    <exon start="32331" stop="32637"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFKMEEGKMSEDILTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPLSLKDPNSQELLDAVEHERNIRMNPPRNTTIFHHPTLGDFELQHLPSSATDSELEERIIQHLAAAAAMGRTRHLARREGPRGRSSAQGRPQFLVFSTHPNAPPLAGASSSTQRSGGEPTPEDLVSGQDSAIVSGQPVTQPSSFQADQVPASGSGSNAAVNQPGTSLINRNPPQASSSNQDRVGPSDFQSFSDSIKSRFSAMSMRYKESLTKSSRGWKEKLFSRNSSTPDHCAESRNEVSAAVATVSNLMEHLETTDSRASSAESNISEDTLPVGHAEQHAPVIDNTHSLNEDNRQAPCAASSGSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="37756" PGL_stop="33982"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37756" e_stop="37483"/>
            <exon e_start="35491" e_stop="35389"/>
            <exon e_start="34390" e_stop="33982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37756" e_stop="37483" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37482" i_stop="35492" i_length="1991"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35491" e_stop="35389" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35388" i_stop="34391" i_length="998"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34390" e_stop="33982" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37756" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37753" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37724" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37720" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37711" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37711" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37711" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37710" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37707" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37700" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37694" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="33982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37690" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37672" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37665" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37601" stop="37483"/>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35491" stop="35389"/>
              <exon start="34390" stop="34048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT : CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG : GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAAGTGTTGTCTATGTTTGCCT</gDNA_template>
            <first_frame> S  S  F  I  T  P  T  *  E  *  F  *  K  D  H  F  L  R  R  R  R  A  L  K  S  I  N  N  G  *  G  F  I  I  I  S  V  L  S  K  E  I  L  G  R  I  Q  G  V  L  G  R  E  I  F  L  F  G  Q  L  F  K  V  H  Q  A  R  Q  A  T  P  L  L  V  *  F  *  C  *  G  V  H  C  F  *  S  T  S  R  T  H   : S  E  D  C  *  G  S  S  K  D  *  C  C  R  R  H  Y  W  S  C  F  N  C  R  C  Y  L  E  V  F  Q  E  F  A  W :   Y  C  T  I  S  W  S  W  R  C  L  W  L  D  I  W  T  G  S  C  *  S  L  A  A  A  I  Q  A  *  H  H  G  C  S  G  *  I  H  G  M  V  A  E  Q  G  *  R  T  V  I  L  I  S  Y  P  P  L  K  D  S  L  K  F  G  F  G  V  K  C  Q  *  T  S  F  R  N  K  N  Q  S  E  C  S  K  G  S  T  L  S  F  R  A  E  S  L  R  N  V  D  S  G  S  F  P  *  R  T  N  Q  C  V  Y  E  V  W  S  S  S  L  S  Y  S  K  S  K  R  L  C  K  C  C  L  C  L  P </first_frame>
            <second_frame>  H  H  S  S  H  Q  P  R  N  N  S  R  R  T  T  F  *  E  E  E  E  L  *  N  R  L  T  M  A  E  D  S  S  S  S  Q  S  F  L  R  R  Y  W  E  G  Y  K  E  F  W  G  E  R  F  S  F  L  D  N  Y  S  R  F  I  K  R  D  K  P  L  P  S  W  S  D  S  D  V  E  E  F  I  A  S  D  P  L  H  G  P  T  :  L  R  T  A  R  E  A  V  K  I  S  A  V  G  G  I  I  G  A  V  S  T  A  G  V  T  W  K  Y  S  R  S  L  H   : G  T  A  L  S  L  G  A  G  A  V  F  G  W  T  F  G  Q  E  V  A  N  H  W  L  Q  L  Y  R  L  D  T  M  A  A  Q  V  K  F  M  E  W  W  Q  N  K  V  E  G  Q  *  F  S  Y  L  I  P  R  *  R  T  V  *  S  L  V  L  V  L  N  V  N  E  L  L  S  G  I  R  I  N  Q  S  V  Q  K  D  R  L  Y  L  S  V  L  N  R  *  E  M  *  I  L  A  V  F  L  E  E  L  I  N  V  C  T  K  F  G  V  H  L  F  P  T  Q  N  L  S  V  C  A  S  V  V  Y  V  C   </second_frame>
            <third_frame>   I  I  H  H  T  N  L  G  I  I  L  E  G  P  L  F  E  K  K  K  S  S  K  I  D  *  Q  W  L  R  I  H  H  H  L  S  P  F  *  G  D  I  G  K  D  T  R  S  F  G  A  R  D  F  P  F  W  T  T  I  Q  G  S  S  S  A  T  S  H  S  P  L  G  L  I  L  M  L  R  S  S  L  L  L  I  H  F  T  D  P  L :   *  G  L  L  G  K  Q  *  R  L  V  L  *  E  A  L  L  E  L  F  Q  L  Q  V  L  L  G  S  I  P  G  V  C  M  :  V  L  H  Y  L  L  E  L  A  L  S  L  A  G  H  L  D  R  K  L  L  I  T  G  C  S  Y  T  G  L  T  P  W  L  L  R  L  N  S  W  N  G  G  R  T  R  L  K  D  S  N  S  H  I  L  S  P  V  E  G  Q  F  E  V  W  F  W  C  *  M  S  M  N  F  F  Q  E  *  E  S  I  R  V  F  K  R  I  D  F  I  F  P  C  *  I  V  K  K  C  R  F  W  Q  F  S  L  K  N  *  S  M  C  V  R  S  L  E  F  I  S  F  L  L  K  I  *  A  S  V  Q  V  L  S  M  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37686" stop="37483"/>
                    <exon start="35491" stop="35389"/>
                    <exon start="34390" stop="34239"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRLTMAEDSSSSQSFLRRYWEGYKEFWGERFSFLDNYSRFIKRDKPLPSWSDSDVEEFIASDPLHGPTLRTAREAVKISAVGGIIGAVSTAGVTWKYSRSLHGTALSLGAGAVFGWTFGQEVANHWLQLYRLDTMAAQVKFMEWWQNKVEGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="39764" PGL_stop="42771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39764" e_stop="40149"/>
            <exon e_start="41254" e_stop="42154"/>
            <exon e_start="42281" e_stop="42771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39764" e_stop="40149" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="40150" i_stop="41253" i_length="1104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41254" e_stop="42154" e_length="901"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42155" i_stop="42280" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42281" e_stop="42771" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39764" stop="40149"/>
              <exon start="41254" stop="42154"/>
              <exon start="42281" stop="42771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39765" stop="40149"/>
              <exon start="41254" stop="41546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39765" stop="40149"/>
              <exon start="41254" stop="41431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41962" stop="42154"/>
              <exon start="42281" stop="42771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAG : GTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAGGTAATTGTGACTTTACTGTTTCTTCGTTTTTATGTAGATCTCTTGATATATTTAACATGATTTGAGAATGAAGATTCCATTTCAGTTAAGTTCTGATTAATGCCAAATGGGAGACAGAGGGCTCCCTATCTTTAGCGGGGAGAAAACTGGTTTCTTTTAAAAAACAATGCATCTAGGACAGAAAAAGGAGAATTAATGCCTAAATCTGATAACATATAGTGAATAGATGATCATCGAGAAGCTTAGATTTTAACGTGGTTACATGGTTGCACCTAACTTTGCTAACATTTCTTCTGTTCAATTAATACCCAACTCTGCTAACTATAGTGAAGATGTTTATATCGGATTTGCAATTCCATATATAAGCATTTATTTCAGGTTTTAATACAACATGGTTCAAGTGTCATGCGCGTTTCTTCTTTAATTAGAATATTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAG : ATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</gDNA_template>
            <first_frame> H  L  K  I  F  H  S  Q  N  S  N  T  P  T  I  F  F  P  A  I  R  P  A  G  V  F  A  G  V  F  L  L  L  E  L  Y  C  G  F  D  P  F  K  H  S  A  I  S  E  I  K  D  F  K  A  Y  R  V  D  P  P  A  W  S  E  I  P  V  E  K  D  T  Q  N  L  L  Q  K  S  E  I  K  F  L  N  Q  I  Q  G  P  E  S  I  A  F  D  P  K  G  R  G  P  Y  T  G  I  A  D  G  R  I  V  L  W  D  G  E  K  W  T  D  F  A  Y  T  S  A  N  R :   S  G  L  C  D  P  K  P  S  P  L  S  Y  L  E  N  E  H  I  C  G  R  P  L  G  L  R  F  D  K  K  T  G  D  L  Y  I  A  D  A  Y  F  G  L  M  K  V  G  P  E  G  G  L  A  E  T  L  T  T  E  A  E  G  V  P  L  V  F  T  N  D  L  D  V  D  D  E  G  N  V  Y  F  T  D  S  S  T  K  Y  Q  R  R  *  L  *  L  Y  C  F  F  V  F  M  *  I  S  *  Y  I  *  H  D  L  R  M  K  I  P  F  Q  L  S  S  D  *  C  Q  M  G  D  R  G  L  P  I  F  S  G  E  K  T  G  F  F  *  K  T  M  H  L  G  Q  K  K  E  N  *  C  L  N  L  I  T  Y  S  E  *  M  I  I  E  K  L  R  F  *  R  G  Y  M  V  A  P  N  F  A  N  I  S  S  V  Q  L  I  P  N  S  A  N  Y  S  E  D  V  Y  I  G  F  A  I  P  Y  I  S  I  Y  F  R  F  *  Y  N  M  V  Q  V  S  C  A  F  L  L  *  L  E  Y  Y  Y  P  P  H  L  A  Q  E  L  Y  A  A  G  L  L  S  R  R  *  W  E  G  L  E  V  Q  F  *  Y  *  T  N  H  C  S  C  S  E  S  P  I  P  K  R  S  V  T  K  Q  G  R  F  L  L  C  I  L  *  S  C  Q  G  K  :  I  T  E  V  L  V  E  R  R  E  S  G  D  L  *  G  D  G  S  P  P  R  I  S  *  *  C  Q  H  K  *  E  R  *  I  L  G  S  N  P  L  S  P  Y  H  L  Q  L  Y  K  F  H  I  P  T  T  S  S  I  L  A  E  A  S  Y  P  C  K  A  P  R  P  L  A  P  R  R  Q  A  T  R  Y  C  C  E  V  *  P  *  R  *  V  V  T  N  I  G  R  R  R  R  E  S  S  S  S  C  K  *  C  *  G  E  R  W  E  A  M  D  G  K  C  V  D  A  F  H  C  C  L  P  T  T  M  S  *  N  T  *  F  F  N  K  L  S  T  *  F  L  M  V  V  C  S  I  *  F  I  R  I  I  Q  *   </first_frame>
            <second_frame>  I  S  K  S  F  T  H  K  I  Q  I  H  Q  L  F  F  F  R  Q  *  G  R  R  E  Y  L  P  E  Y  F  F  C  W  N  C  T  V  G  L  T  L  S  N  T  V  Q  F  L  K  S  K  T  L  K  L  T  E  L  I  H  Q  L  G  L  K  S  Q  L  K  R  I  P  R  T  C  F  R  N  R  K  S  S  F  *  I  R  F  R  A  R  K  V  S  H  L  T  R  K  V  V  G  L  I  Q  E  *  L  M  A  E  L  C  C  G  M  E  R  N  G  L  I  S  H  I  R  L  L  I   : G  L  A  F  V  T  Q  N  H  L  P  *  A  I  *  K  M  N  T  S  V  V  G  L  W  D  Y  G  L  I  K  K  Q  V  T  C  I  L  Q  M  H  I  L  G  *  *  K  *  G  L  K  G  D  *  Q  K  H  *  L  L  R  L  K  E  C  L  S  Y  S  Q  M  T  L  T  L  M  M  K  E  M  S  I  L  Q  I  A  A  P  S  T  K  E  G  N  C  D  F  T  V  S  S  F  L  C  R  S  L  D  I  F  N  M  I  *  E  *  R  F  H  F  S  *  V  L  I  N  A  K  W  E  T  E  G  S  L  S  L  A  G  R  K  L  V  S  F  K  K  Q  C  I  *  D  R  K  R  R  I  N  A  *  I  *  *  H  I  V  N  R  *  S  S  R  S  L  D  F  N  V  V  T  W  L  H  L  T  L  L  T  F  L  L  F  N  *  Y  P  T  L  L  T  I  V  K  M  F  I  S  D  L  Q  F  H  I  *  A  F  I  S  G  F  N  T  T  W  F  K  C  H  A  R  F  F  F  N  *  N  I  T  T  H  P  I  L  H  R  N  Y  M  L  L  V  Y  S  A  E  D  S  G  R  V  L  K  Y  N  S  N  T  K  Q  T  T  V  L  V  R  N  L  Q  F  P  N  G  L  S  L  S  K  D  G  S  F  F  V  F  C  E  V  A  K  G  R :   L  Q  K  Y  W  L  K  G  E  K  A  G  T  F  E  V  M  A  V  L  P  G  Y  P  D  N  V  S  T  N  E  R  G  E  F  W  V  A  I  H  C  R  R  T  I  Y  S  Y  I  N  S  I  Y  P  Q  L  R  L  F  L  L  K  L  P  I  P  V  K  L  R  A  L  L  H  L  G  G  K  L  P  A  I  V  V  K  Y  N  P  E  G  K  L  L  R  I  L  E  D  E  E  G  K  V  V  R  A  V  S  D  V  E  E  K  D  G  K  L  W  M  G  S  V  L  M  P  F  I  A  V  Y  Q  L  Q  *  V  K  T  L  D  F  S  T  N  Y  L  L  S  S  L  W  L  F  V  A  S  N  L  S  E  *  F  N  K  </second_frame>
            <third_frame>   S  Q  N  L  S  L  T  K  F  K  Y  T  N  Y  F  F  S  G  N  K  A  G  G  S  I  C  R  S  I  S  F  V  G  T  V  L  W  V  *  P  F  Q  T  Q  C  N  F  *  N  Q  R  L  *  S  L  Q  S  *  S  T  S  L  V  *  N  P  S  *  K  G  Y  P  E  L  A  S  E  I  G  N  Q  V  F  E  S  D  S  G  P  G  K  Y  R  I  *  P  E  R  S  W  A  L  Y  R  N  S  *  W  Q  N  C  V  V  G  W  R  E  M  D  *  F  R  I  Y  V  C  *  *  :  V  W  P  L  *  P  K  T  I  S  P  E  L  F  R  K  *  T  H  L  W  *  A  F  G  I  T  V  *  *  K  N  R  *  L  V  Y  C  R  C  I  F  W  V  D  E  S  R  A  *  R  G  T  S  R  N  I  D  Y  *  G  *  R  S  A  S  R  I  H  K  *  P  *  R  *  *  *  R  K  C  L  F  Y  R  *  Q  H  Q  V  P  K  K  V  I  V  T  L  L  F  L  R  F  Y  V  D  L  L  I  Y  L  T  *  F  E  N  E  D  S  I  S  V  K  F  *  L  M  P  N  G  R  Q  R  A  P  Y  L  *  R  G  E  N  W  F  L  L  K  N  N  A  S  R  T  E  K  G  E  L  M  P  K  S  D  N  I  *  *  I  D  D  H  R  E  A  *  I  L  T  W  L  H  G  C  T  *  L  C  *  H  F  F  C  S  I  N  T  Q  L  C  *  L  *  *  R  C  L  Y  R  I  C  N  S  I  Y  K  H  L  F  Q  V  L  I  Q  H  G  S  S  V  M  R  V  S  S  L  I  R  I  L  L  P  T  P  S  C  T  G  T  I  C  C  W  F  T  Q  Q  K  I  V  G  G  S  *  S  T  I  L  I  L  N  K  P  L  F  L  F  G  I  S  N  S  Q  T  V  C  H  *  A  R  T  V  P  S  L  Y  S  V  K  L  P  R  E   : D  Y  R  S  T  G  *  K  A  R  K  R  G  P  L  R  *  W  Q  S  S  Q  D  I  L  I  M  S  A  Q  M  R  E  V  N  F  G  *  Q  S  T  V  A  V  P  F  T  A  I  *  I  P  Y  T  H  N  F  V  Y  S  C  *  S  F  L  S  L  *  S  S  A  P  S  C  T  S  E  A  S  Y  P  L  L  L  *  S  I  T  L  K  V  S  C  Y  E  Y  W  K  T  K  K  G  K  *  F  E  L  *  V  M  L  R  R  K  M  G  S  Y  G  W  E  V  C  *  C  L  S  L  L  F  T  N  Y  N  E  L  K  H  L  I  F  Q  Q  T  I  Y  L  V  P  Y  G  C  L  *  H  L  I  Y  Q  N  N  S  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39764" stop="40149"/>
                    <exon start="41254" stop="41533"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKIFHSQNSNTPTIFFPAIRPAGVFAGVFLLLELYCGFDPFKHSAISEIKDFKAYRVDPPAWSEIPVEKDTQNLLQKSEIKFLNQIQGPESIAFDPKGRGPYTGIADGRIVLWDGEKWTDFAYTSANRSGLCDPKPSPLSYLENEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLAETLTTEAEGVPLVFTNDLDVDDEGNVYFTDSSTKYQRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41958" stop="42154"/>
                    <exon start="42281" stop="42683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NITTHPILHRNYMLLVYSAEDSGRVLKYNSNTKQTTVLVRNLQFPNGLSLSKDGSFFVFCEVAKGRLQKYWLKGEKAGTFEVMAVLPGYPDNVSTNERGEFWVAIHCRRTIYSYINSIYPQLRLFLLKLPIPVKLRALLHLGGKLPAIVVKYNPEGKLLRILEDEEGKVVRAVSDVEEKDGKLWMGSVLMPFIAVYQLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="46817" PGL_stop="47406"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46817" e_stop="47406"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="46817" e_stop="47406" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46817" stop="47406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46843" stop="47387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTTCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAAAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAGTTTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATAAATGAGGAAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATATAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGGCGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</gDNA_template>
            <first_frame> K  I  I  L  S  H  I  Y  L  F  K  L  L  I  L  S  S  I  *  F  F  F  S  L  M  V  I  F  S  D  F  P  P  T  F  K  L  Q  I  F  F  C  H  I  F  W  L  F  F  *  S  K  I  E  S  T  K  I  P  L  I  K  V  S  L  I  F  I  L  F  S  D  F  F  S  N  F  I  F  V  *  I  L  K  K  F  C  L  Y  F  S  I  S  V  M  I  Y  S  P  M  A  E  S  K  R  L  T  R  G  I  H  L  N  Q  P  I  S  G  D  F  S  S  F  N  L  F  I  T  *  Q  I  V  Y  N  V  *  *  M  R  K  E  R  G  *  E  H  L  Q  D  S  L  V  C  K  T  F  L  K  F  R  T  Q  I  *  N  L  C  L  L  V  R  I  L  K  K  T  A  K  I  A  N  N  F  L  L  V  C  F  V  F  I  V  L  F  *  N   </first_frame>
            <second_frame>  K  L  F  S  L  I  F  I  F  S  N  C  *  F  S  L  P  F  N  F  F  S  L  L  W  L  S  F  L  I  F  L  Q  H  S  S  C  K  Y  F  F  A  I  Y  F  G  C  F  F  N  P  K  L  N  Q  Q  K  S  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  L  I  L  F  L  F  K  S  *  K  S  F  V  C  I  F  Q  F  P  L  *  F  T  L  Q  W  L  N  P  R  G  L  L  E  V  F  I  L  I  N  Q  F  L  V  I  F  H  P  L  I  Y  L  L  L  N  K  *  C  I  M  Y  D  K  *  G  K  K  E  G  K  N  I  Y  K  T  H  W  C  A  K  P  S  S  N  S  E  R  K  Y  K  I  F  V  Y  S  *  G  S  *  K  R  R  R  R  S  R  T  I  F  Y  *  F  V  L  Y  L  *  F  F  F  R  I  </second_frame>
            <third_frame>   N  Y  S  L  S  Y  L  S  F  Q  I  V  N  S  L  F  H  L  I  F  F  L  S  Y  G  Y  L  F  *  F  S  S  N  I  Q  V  A  N  I  F  L  P  Y  I  L  V  V  F  L  I  Q  N  *  I  N  K  N  P  F  D  *  G  I  S  N  L  Y  P  I  F  R  F  L  F  *  F  Y  F  C  L  N  L  K  K  V  L  F  V  F  F  N  F  R  Y  D  L  L  S  N  G  *  I  Q  E  A  Y  *  R  Y  S  S  *  S  T  N  F  W  *  F  F  I  L  *  F  I  Y  Y  L  T  N  S  V  *  C  M  I  N  E  E  R  K  R  V  R  T  F  T  R  L  I  G  V  Q  N  L  P  Q  I  Q  N  A  N  I  K  S  L  S  T  R  E  D  L  E  K  D  G  E  D  R  E  Q  F  S  I  S  L  F  C  I  Y  S  S  F  L  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0131F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="51730" PGL_stop="52055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51730" e_stop="51848"/>
            <exon e_start="51879" e_stop="52055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.728" e_score="0.924"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="51730" e_stop="51848" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.728">
            <gDNA_intron_boundary i_start="51849" i_stop="51878" i_length="30"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="51879" e_stop="52055" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51730" stop="51848"/>
              <exon start="51879" stop="52055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTATTTCTATTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAACATATATCTTCGTGTTATACACTTAATTATACAATTTATAAACATTTTACTTCAATTCAATTGTAG : AGAAAAAGGCCAATGAATTATACAATTGCGAATTATACAAATTGCAGTGAAATACAATTTTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTCTATTTTTGTATAAAGCGAGAGAAAAGCATATATCTTGTTGCTATACACTTATAATTATGCAATATACATGCATTTTA</gDNA_template>
            <first_frame> S  I  S  I  L  Y  K  A  R  E  N  C  I  Y  T  C  K  N  I  Y  L  R  V  I  H  L  I  I  Q  F  I  N  I  L  L  Q  F  N  C  R :   E  K  G  Q  *  I  I  Q  L  R  I  I  Q  I  A  V  K  Y  N  F  L  *  L  Y  T  T  E  V  Y  I  L  C  F  Y  F  C  I  K  R  E  K  S  I  Y  L  V  A  I  H  L  *  L  C  N  I  H  A  F   </first_frame>
            <second_frame>  L  F  L  F  C  I  K  R  E  K  I  V  Y  T  H  A  K  T  Y  I  F  V  L  Y  T  *  L  Y  N  L  *  T  F  Y  F  N  S  I  V   : E  K  K  A  N  E  L  Y  N  C  E  L  Y  K  L  Q  *  N  T  I  F  S  S  F  I  Q  Q  K  C  I  Y  C  V  S  I  F  V  *  S  E  R  K  A  Y  I  L  L  L  Y  T  Y  N  Y  A  I  Y  M  H  F  </second_frame>
            <third_frame>   Y  F  Y  F  V  *  S  E  R  K  L  Y  I  H  M  Q  K  H  I  S  S  C  Y  T  L  N  Y  T  I  Y  K  H  F  T  S  I  Q  L  *  :  R  K  R  P  M  N  Y  T  I  A  N  Y  T  N  C  S  E  I  Q  F  S  L  A  L  Y  N  R  S  V  Y  I  V  F  L  F  L  Y  K  A  R  E  K  H  I  S  C  C  Y  T  L  I  I  M  Q  Y  T  C  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0131F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="52055" PGL_stop="51902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52055" e_stop="51902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="52055" e_stop="51902" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52055" stop="51902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGCATGTATATTGCATAATTATAAGTGTATAGCAACAAGATATATGCTTTTCTCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTTGTATAATTCGCAATT</gDNA_template>
            <first_frame> *  N  A  C  I  L  H  N  Y  K  C  I  A  T  R  Y  M  L  F  S  R  F  I  Q  K  *  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  C  I  I  R  N  </first_frame>
            <second_frame>  K  M  H  V  Y  C  I  I  I  S  V  *  Q  Q  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  F  V  *  F  A  I </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  N  K  I  Y  A  F  L  S  L  Y  T  K  I  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  L  Y  N  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0131F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="55800" PGL_stop="56217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55800" e_stop="56217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="55800" e_stop="56217" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55800" stop="56217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACTACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGCCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCATCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACAAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTAGATTTTTGACTCCGAATTTCTCTCTTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  L  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  P  T  K  Q  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  P  S  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  Q  S  G  N  R  N  L  K  L  V  V  M  A  R  F  L  T  P  N  F  S  L  F  S  L  F  W  L  L  K  N  S  L  </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  Y  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  C  P  Q  N  K  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  D  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  K  A  G  I  A  I  *  S  W  L  L  W  L  D  F  *  L  R  I  S  L  F  F  L  S  F  G  C  *  K  T  L  S </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  A  H  K  T  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  T  I  K  S  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  Y  G  *  I  F  D  S  E  F  L  S  F  F  S  L  L  A  A  E  K  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0131F12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="61373" PGL_stop="67446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61373" e_stop="61738"/>
            <exon e_start="64002" e_stop="64121"/>
            <exon e_start="64545" e_stop="64677"/>
            <exon e_start="66259" e_stop="66307"/>
            <exon e_start="66423" e_stop="66498"/>
            <exon e_start="67072" e_stop="67446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61373" e_stop="61738" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64002" e_stop="64121" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.881">
            <gDNA_intron_boundary i_start="64122" i_stop="64544" i_length="423"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64545" e_stop="64677" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66259" e_stop="66307" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66423" e_stop="66498" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="67072" e_stop="67446" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61373" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61373" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61473" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61479" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61482" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61485" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61485" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61489" stop="61738"/>
              <exon start="64002" stop="64099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61490" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61491" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61491" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61495" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61496" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61500" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61500" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61513" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61513" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61515" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61516" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61516" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61517" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61518" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61518" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61518" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61532" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61532" stop="61738"/>
              <exon start="64002" stop="64080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61533" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61534" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61534" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61536" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61538" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61538" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64545" stop="64650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359508" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E250704" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241009" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E261314" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E240214" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="66423" stop="66486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61542" stop="61738"/>
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              <exon start="64545" stop="64596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237763" strand="+"/>
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          <PGS_line>
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              <exon start="66423" stop="66493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325942" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318686" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E261688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E261901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E250831" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="67072" stop="67212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E393736" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E260988" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E248319" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E257773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="64002" stop="64032"/>
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            <referenceDNA id="SGN-E274451" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E257722" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E256491" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E256074" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E259050" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E256753" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E259260" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E254653" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E250016" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E261978" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E264908" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E258048" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E260755" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E254178" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E259944" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E549532" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E711900" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E251100" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E394218" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E241283" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E235382" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E392603" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66259" stop="66307"/>
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            <referenceDNA id="SGN-E393735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67086" stop="67440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG : GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG : AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG : TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA : GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT : TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAGTATTATT</gDNA_template>
            <first_frame> Y  P  T  P  P  R  P  D  Q  T  I  P  I  P  S  I  S  S  S  L  I  C  V  Y  F  V  L  F  H  S  F  I  S  Q  K  L  I  P  Y  L  S  S  P  P  F  F  P  H  L  L  *  A  R  S  F  Q  L  S  S  *  L  H  N  M  M  N  I  T  H  I  S  *  F  *  L  I  L  L  L  L  I  L  R  S  V  F  S  D  L  K  S  L  *  E  M  S  L  D  M  T  Y  S  S  S  S  S  E  R  V  C  Y  V  H  C  N  F  C  S  T  I  L  A  :  V  S  V  P  C  N  S  M  M  T  I  V  T  V  R  C  G  H  C  A  N  L  L  S  V  N  I  A  P  S  L  Q  S  L  P  I  Q  D  L  Q  :  R  Q  N  E  S  S  I  E  D  G  M  S  R  G  Y  G  S  S  S  S  S  T  N  S  F  H  R  F  S  P  I  P  T  D  H  D  Q  P  R  S  P  P  I  R   : V  P  E  K  R  Q  R  V  P  S  A  Y  N  R  F  I  K :   E  E  I  Q  R  I  K  A  S  N  P  D  I  S  H  R  E  A  F  S  T  A  A  K  N  :  W  A  H  F  P  H  I  H  F  G  L  K  L  D  G  N  K  Q  T  N  K  L  D  H  A  V  A  G  E  G  P  Q  K  T  I  G  L  Y  *  L  *  I  K  *  *  I  I  *  S  S  Y  I  M  I  T  N  I  Y  K  Y  N  I  I  *  V  R  C  I  I  Y  I  I  L  I  S  P  N  *  *  T  V  F  S  S  F  S  I  I  P  L  G  P  W  I  P  C  F  F  I  R  I  I  S  C  N  Y  *  L  R  L  F  *  *  Y  T  L  F  I  I  S  S  S  S  I  I </first_frame>
            <second_frame>  T  P  P  H  P  D  Q  T  K  P  F  Q  S  H  Q  S  L  H  L  *  Y  V  F  I  L  Y  S  F  I  H  S  S  L  K  N  L  Y  L  I  Y  H  L  P  L  F  S  P  I  F  C  K  L  G  L  F  N  S  L  P  S  Y  I  T  *  *  T  L  H  I  F  L  D  F  D  S  Y  F  Y  F  *  F  F  D  P  Y  F  L  T  *  K  A  Y  K  K  C  H  L  T  *  H  I  P  P  L  P  R  N  V  F  A  M  F  I  A  T  S  A  A  Q  F  L  R :   L  A  F  H  A  T  V  *  *  Q  *  *  Q  *  G  V  D  T  A  Q  I  C  F  L  L  I  L  H  L  P  F  S  L  S  P  F  K  I  Y  R :   D  K  M  S  Q  V  L  K  M  E  *  V  E  V  M  D  H  H  P  L  L  Q  I  H  F  T  D  F  L  P  F  L  L  I  M  I  N  L  D  P  L  L  F  A  :  Y  R  R  K  D  N  V  F  L  L  P  T  I  D  L  S   : R  R  R  S  K  G  *  R  Q  A  I  L  I  L  A  T  E  K  H  L  A  L  L  P  K  I :   G  H  I  S  L  I  S  I  L  D  S  S  W  M  A  T  N  K  P  I  N  W  I  M  L  L  Q  E  R  V  L  R  K  Q  L  V  S  I  N  Y  K  *  N  N  K  *  Y  D  L  A  I  L  *  S  Q  I  Y  I  N  I  I  L  Y  R  *  D  V  L  Y  I  L  Y  *  S  L  Q  T  N  K  L  F  L  A  L  S  A  L  S  L  *  G  L  G  F  L  V  F  L  F  V  L  *  V  V  T  I  N  Y  D  Y  S  N  N  I  R  C  L  L  L  V  V  V  V  L   </second_frame>
            <third_frame>   P  H  P  T  P  T  R  P  N  H  S  N  P  I  N  L  F  I  S  N  M  C  L  F  C  T  L  S  F  I  H  L  S  K  T  Y  T  L  F  I  I  S  P  F  F  P  P  S  F  V  S  *  V  F  S  T  L  F  L  A  T  *  H  D  E  H  Y  T  Y  F  L  I  L  T  H  T  F  T  S  N  S  S  I  R  I  F  *  P  K  K  L  I  R  N  V  T  *  H  D  I  F  L  L  F  L  G  T  C  L  L  C  S  L  Q  L  L  Q  H  N  S  C   : G  *  R  S  M  Q  Q  Y  D  D  N  S  D  S  K  V  W  T  L  R  K  F  A  F  C  *  Y  C  T  F  P  S  V  S  P  H  S  R  F  T   : E  T  K  *  V  K  Y  *  R  W  N  E  *  R  L  W  I  I  I  L  F  Y  K  F  I  S  Q  I  F  S  H  S  Y  *  S  *  S  T  *  I  P  S  Y  S  R :   T  G  E  K  T  T  C  S  F  C  L  Q  *  I  Y  Q  :  G  G  D  P  K  D  K  G  K  Q  S  *  Y  *  P  Q  R  S  I  *  H  C  C  Q  K   : L  G  T  F  P  S  Y  P  F  W  T  Q  A  G  W  Q  Q  T  N  Q  *  I  G  S  C  C  C  R  R  G  S  S  E  N  N  W  S  L  L  I  I  N  K  I  I  N  N  M  I  *  L  Y  Y  D  H  K  Y  I  *  I  *  Y  Y  I  G  E  M  Y  Y  I  Y  Y  I  N  L  S  K  L  I  N  C  F  *  L  F  Q  H  Y  P  F  R  A  L  D  S  L  F  F  Y  S  Y  Y  K  L  *  L  L  T  T  I  I  L  I  I  Y  V  V  Y  Y  *  *  *  *  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61652" stop="61738"/>
                    <exon start="64002" stop="64121"/>
                    <exon start="64545" stop="64677"/>
                    <exon start="66259" stop="66307"/>
                    <exon start="66423" stop="66498"/>
                    <exon start="67072" stop="67188"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSLDMTYSSSSSERVCYVHCNFCSTILAVSVPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQDLQRQNESSIEDGMSRGYGSSSSSTNSFHRFSPIPTDHDQPRSPPIRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTNKLDHAVAGEGPQKTIGLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61477" e_stop="61738"/>
            <exon e_start="64002" e_stop="64121"/>
            <exon e_start="64542" e_stop="64677"/>
            <exon e_start="66259" e_stop="66307"/>
            <exon e_start="66423" e_stop="66498"/>
            <exon e_start="67072" e_stop="67440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.171" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61477" e_stop="61738" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61739" i_stop="64001" i_length="2263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64002" e_stop="64121" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.171">
            <gDNA_intron_boundary i_start="64122" i_stop="64541" i_length="420"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="64542" e_stop="64677" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="64678" i_stop="66258" i_length="1581"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66259" e_stop="66307" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66308" i_stop="66422" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66423" e_stop="66498" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66499" i_stop="67071" i_length="573"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="67072" e_stop="67440" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61477" stop="61738"/>
              <exon start="64002" stop="64121"/>
              <exon start="64542" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61489" stop="61738"/>
              <exon start="64002" stop="64099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61532" stop="61738"/>
              <exon start="64002" stop="64080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61593" stop="61738"/>
              <exon start="64002" stop="64032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64592" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64623" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64623" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64651" stop="64677"/>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66259" stop="66307"/>
              <exon start="66423" stop="66498"/>
              <exon start="67072" stop="67439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67086" stop="67440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG : GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG : CAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG : TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA : GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT : TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAGT</gDNA_template>
            <first_frame> T  Y  T  L  F  I  I  S  P  F  F  P  P  S  F  V  S  *  V  F  S  T  L  F  L  A  T  *  H  D  E  H  Y  T  Y  F  L  I  L  T  H  T  F  T  S  N  S  S  I  R  I  F  *  P  K  K  L  I  R  N  V  T  *  H  D  I  F  L  L  F  L  G  T  C  L  L  C  S  L  Q  L  L  Q  H  N  S  C   : G  *  R  S  M  Q  Q  Y  D  D  N  S  D  S  K  V  W  T  L  R  K  F  A  F  C  *  Y  C  T  F  P  S  V  S  P  H  S  R  F  T   : A  E  T  K  *  V  K  Y  *  R  W  N  E  *  R  L  W  I  I  I  L  F  Y  K  F  I  S  Q  I  F  S  H  S  Y  *  S  *  S  T  *  I  P  S  Y  S  R :   T  G  E  K  T  T  C  S  F  C  L  Q  *  I  Y  Q  :  G  G  D  P  K  D  K  G  K  Q  S  *  Y  *  P  Q  R  S  I  *  H  C  C  Q  K   : L  G  T  F  P  S  Y  P  F  W  T  Q  A  G  W  Q  Q  T  N  Q  *  I  G  S  C  C  C  R  R  G  S  S  E  N  N  W  S  L  L  I  I  N  K  I  I  N  N  M  I  *  L  Y  Y  D  H  K  Y  I  *  I  *  Y  Y  I  G  E  M  Y  Y  I  Y  Y  I  N  L  S  K  L  I  N  C  F  *  L  F  Q  H  Y  P  F  R  A  L  D  S  L  F  F  Y  S  Y  Y  K  L  *  L  L  T  T  I  I  L  I  I  Y  V  V  Y  Y  *  *  *  *  </first_frame>
            <second_frame>  L  I  P  Y  L  S  S  P  P  F  F  P  H  L  L  *  A  R  S  F  Q  L  S  S  *  L  H  N  M  M  N  I  T  H  I  S  *  F  *  L  I  L  L  L  L  I  L  R  S  V  F  S  D  L  K  S  L  *  E  M  S  L  D  M  T  Y  S  S  S  S  S  E  R  V  C  Y  V  H  C  N  F  C  S  T  I  L  A  :  V  S  V  P  C  N  S  M  M  T  I  V  T  V  R  C  G  H  C  A  N  L  L  S  V  N  I  A  P  S  L  Q  S  L  P  I  Q  D  L  Q  :  Q  R  Q  N  E  S  S  I  E  D  G  M  S  R  G  Y  G  S  S  S  S  S  T  N  S  F  H  R  F  S  P  I  P  T  D  H  D  Q  P  R  S  P  P  I  R   : V  P  E  K  R  Q  R  V  P  S  A  Y  N  R  F  I  K :   E  E  I  Q  R  I  K  A  S  N  P  D  I  S  H  R  E  A  F  S  T  A  A  K  N  :  W  A  H  F  P  H  I  H  F  G  L  K  L  D  G  N  K  Q  T  N  K  L  D  H  A  V  A  G  E  G  P  Q  K  T  I  G  L  Y  *  L  *  I  K  *  *  I  I  *  S  S  Y  I  M  I  T  N  I  Y  K  Y  N  I  I  *  V  R  C  I  I  Y  I  I  L  I  S  P  N  *  *  T  V  F  S  S  F  S  I  I  P  L  G  P  W  I  P  C  F  F  I  R  I  I  S  C  N  Y  *  L  R  L  F  *  *  Y  T  L  F  I  I  S  S  S  S </second_frame>
            <third_frame>   L  Y  L  I  Y  H  L  P  L  F  S  P  I  F  C  K  L  G  L  F  N  S  L  P  S  Y  I  T  *  *  T  L  H  I  F  L  D  F  D  S  Y  F  Y  F  *  F  F  D  P  Y  F  L  T  *  K  A  Y  K  K  C  H  L  T  *  H  I  P  P  L  P  R  N  V  F  A  M  F  I  A  T  S  A  A  Q  F  L  R :   L  A  F  H  A  T  V  *  *  Q  *  *  Q  *  G  V  D  T  A  Q  I  C  F  L  L  I  L  H  L  P  F  S  L  S  P  F  K  I  Y  S :   R  D  K  M  S  Q  V  L  K  M  E  *  V  E  V  M  D  H  H  P  L  L  Q  I  H  F  T  D  F  L  P  F  L  L  I  M  I  N  L  D  P  L  L  F  A  :  Y  R  R  K  D  N  V  F  L  L  P  T  I  D  L  S   : R  R  R  S  K  G  *  R  Q  A  I  L  I  L  A  T  E  K  H  L  A  L  L  P  K  I :   G  H  I  S  L  I  S  I  L  D  S  S  W  M  A  T  N  K  P  I  N  W  I  M  L  L  Q  E  R  V  L  R  K  Q  L  V  S  I  N  Y  K  *  N  N  K  *  Y  D  L  A  I  L  *  S  Q  I  Y  I  N  I  I  L  Y  R  *  D  V  L  Y  I  L  Y  *  S  L  Q  T  N  K  L  F  L  A  L  S  A  L  S  L  *  G  L  G  F  L  V  F  L  F  V  L  *  V  V  T  I  N  Y  D  Y  S  N  N  I  R  C  L  L  L  V  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61652" stop="61738"/>
                    <exon start="64002" stop="64121"/>
                    <exon start="64542" stop="64677"/>
                    <exon start="66259" stop="66307"/>
                    <exon start="66423" stop="66498"/>
                    <exon start="67072" stop="67188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSLDMTYSSSSSERVCYVHCNFCSTILAVSVPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQDLQQRQNESSIEDGMSRGYGSSSSSTNSFHRFSPIPTDHDQPRSPPIRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTNKLDHAVAGEGPQKTIGLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="73802" PGL_stop="71626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73802" e_stop="73514"/>
            <exon e_start="72873" e_stop="72600"/>
            <exon e_start="71992" e_stop="71626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73802" e_stop="73514" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.936">
            <gDNA_intron_boundary i_start="73513" i_stop="72874" i_length="640"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72873" e_stop="72600" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72599" i_stop="71993" i_length="607"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="71992" e_stop="71626" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73802" stop="73514"/>
              <exon start="72873" stop="72600"/>
              <exon start="71992" stop="71626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAGATATGGAATTTCATTTTTATCTATCAGATGATAAGGCAATTACTAAAGGCGCTGAGATTGTAATGAATGAGCCATTAAAGTCCACAGATATCCCTGGACGGTTAAATGTACTTGTAAATTGGTCACCTAAAATGGTTGAAAAATACAATACAAGTCTTTTCAGCTCACTTCCCGAAGTTTTCAAATCTGGGTTTTTTGGCAAGAGACCTCAAGATTCTGTCTCACTGTATAAATGTCTTGAGGCATTTCTGAAGGAAGAACCTCTAGGGCCAGAAGATATGTG : GTTTTGCCCTGGATGTAAGGAGCATCGCCAAGCCACTAAGAAGTTGGATCTTTGGAGACTGCCGGAAATTCTGGTCATCCACCTGAAGAGGTTCTCATACAGCCGGTTTATAAAGAACAAGTTGGAGACATACGTTGACTTCCCCACTCATGATCTCGATTTATCCTCATATATGGCCTACAAGGATGGAAAATCTTCCTATCGGTATATGCTTTATGCAATTAGCAACCATTATGGAAGCATGGGAGGGGGTCACTATACTGCATTTGTTCAT : CAAGGTGCTGATCGGTGGTATGACTTCGATGACAGCCATGTGTCTCCCATCAACAAGGACAAGATCAAAACCTCAGCAGCGTATGTTCTGTTTTATAGACGAGTTGAAGAAACCTAACGTTAGATTATAGTTACTAAACATCAAGGCTTGATTTATCTTTTCGCAAAGCCTTACAGGAATGGGTTTGGTTTCAACATTCTTTGACCTTTGGCACCATGGCATCCAGTTTAGTTGTAGTTTTGGGTCAAAAAGAATCTAGTGAAGTGGTAACAATGGTTATGTAGCAGTGTAGCAAAGAGGGAAAGAAATTTAAGTTAATGTTTCCATAGCCGTTTTAAATAGAAGATACTTTTCCTTAATTATGGCA</gDNA_template>
            <first_frame> I  *  I  W  N  F  I  F  I  Y  Q  M  I  R  Q  L  L  K  A  L  R  L  *  *  M  S  H  *  S  P  Q  I  S  L  D  G  *  M  Y  L  *  I  G  H  L  K  W  L  K  N  T  I  Q  V  F  S  A  H  F  P  K  F  S  N  L  G  F  L  A  R  D  L  K  I  L  S  H  C  I  N  V  L  R  H  F  *  R  K  N  L  *  G  Q  K  I  C   : G  F  A  L  D  V  R  S  I  A  K  P  L  R  S  W  I  F  G  D  C  R  K  F  W  S  S  T  *  R  G  S  H  T  A  G  L  *  R  T  S  W  R  H  T  L  T  S  P  L  M  I  S  I  Y  P  H  I  W  P  T  R  M  E  N  L  P  I  G  I  C  F  M  Q  L  A  T  I  M  E  A  W  E  G  V  T  I  L  H  L  F  I :   K  V  L  I  G  G  M  T  S  M  T  A  M  C  L  P  S  T  R  T  R  S  K  P  Q  Q  R  M  F  C  F  I  D  E  L  K  K  P  N  V  R  L  *  L  L  N  I  K  A  *  F  I  F  S  Q  S  L  T  G  M  G  L  V  S  T  F  F  D  L  W  H  H  G  I  Q  F  S  C  S  F  G  S  K  R  I  *  *  S  G  N  N  G  Y  V  A  V  *  Q  R  G  K  E  I  *  V  N  V  S  I  A  V  L  N  R  R  Y  F  S  L  I  M  A </first_frame>
            <second_frame>  F  R  Y  G  I  S  F  L  S  I  R  *  *  G  N  Y  *  R  R  *  D  C  N  E  *  A  I  K  V  H  R  Y  P  W  T  V  K  C  T  C  K  L  V  T  *  N  G  *  K  I  Q  Y  K  S  F  Q  L  T  S  R  S  F  Q  I  W  V  F  W  Q  E  T  S  R  F  C  L  T  V  *  M  S  *  G  I  S  E  G  R  T  S  R  A  R  R  Y  V  :  V  L  P  W  M  *  G  A  S  P  S  H  *  E  V  G  S  L  E  T  A  G  N  S  G  H  P  P  E  E  V  L  I  Q  P  V  Y  K  E  Q  V  G  D  I  R  *  L  P  H  S  *  S  R  F  I  L  I  Y  G  L  Q  G  W  K  I  F  L  S  V  Y  A  L  C  N  *  Q  P  L  W  K  H  G  R  G  S  L  Y  C  I  C  S   : S  R  C  *  S  V  V  *  L  R  *  Q  P  C  V  S  H  Q  Q  G  Q  D  Q  N  L  S  S  V  C  S  V  L  *  T  S  *  R  N  L  T  L  D  Y  S  Y  *  T  S  R  L  D  L  S  F  R  K  A  L  Q  E  W  V  W  F  Q  H  S  L  T  F  G  T  M  A  S  S  L  V  V  V  L  G  Q  K  E  S  S  E  V  V  T  M  V  M  *  Q  C  S  K  E  G  K  K  F  K  L  M  F  P  *  P  F  *  I  E  D  T  F  P  *  L  W   </second_frame>
            <third_frame>   L  D  M  E  F  H  F  Y  L  S  D  D  K  A  I  T  K  G  A  E  I  V  M  N  E  P  L  K  S  T  D  I  P  G  R  L  N  V  L  V  N  W  S  P  K  M  V  E  K  Y  N  T  S  L  F  S  S  L  P  E  V  F  K  S  G  F  F  G  K  R  P  Q  D  S  V  S  L  Y  K  C  L  E  A  F  L  K  E  E  P  L  G  P  E  D  M  W :   F  C  P  G  C  K  E  H  R  Q  A  T  K  K  L  D  L  W  R  L  P  E  I  L  V  I  H  L  K  R  F  S  Y  S  R  F  I  K  N  K  L  E  T  Y  V  D  F  P  T  H  D  L  D  L  S  S  Y  M  A  Y  K  D  G  K  S  S  Y  R  Y  M  L  Y  A  I  S  N  H  Y  G  S  M  G  G  G  H  Y  T  A  F  V  H  :  Q  G  A  D  R  W  Y  D  F  D  D  S  H  V  S  P  I  N  K  D  K  I  K  T  S  A  A  Y  V  L  F  Y  R  R  V  E  E  T  *  R  *  I  I  V  T  K  H  Q  G  L  I  Y  L  F  A  K  P  Y  R  N  G  F  G  F  N  I  L  *  P  L  A  P  W  H  P  V  *  L  *  F  W  V  K  K  N  L  V  K  W  *  Q  W  L  C  S  S  V  A  K  R  E  R  N  L  S  *  C  F  H  S  R  F  K  *  K  I  L  F  L  N  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0131F12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73800" stop="73514"/>
                    <exon start="72873" stop="72600"/>
                    <exon start="71992" stop="71876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDMEFHFYLSDDKAITKGAEIVMNEPLKSTDIPGRLNVLVNWSPKMVEKYNTSLFSSLPEVFKSGFFGKRPQDSVSLYKCLEAFLKEEPLGPEDMWFCPGCKEHRQATKKLDLWRLPEILVIHLKRFSYSRFIKNKLETYVDFPTHDLDLSSYMAYKDGKSSYRYMLYAISNHYGSMGGGHYTAFVHQGADRWYDFDDSHVSPINKDKIKTSAAYVLFYRRVEET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 202 chains have been computed
$ 
$ memory statistics:
$ 356760 bytes spliced alignments in total
$ 159 spliced alignments have been stored
$ 2243 bytes was the average size of a spliced alignment
$ 26632 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1664 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 216 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:27:37
-->
