<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:31:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324008" ref_strand="+" ref_description="SGN-U324008        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | prefoldin-related KE2 family protein, similar to Swiss-Prot:Q9UHV9 prefoldin subunit 2 (Protein HSPC231) (Homo sapiens); contains Pfam domain, PF01920: KE2 family protein | chr3:7968184-7969636 FORWARD | Aliases: None(evalue: 2e-51, score=199) genbank/nr: KE2(evalue: 2e-55, score=218)">
      <seq>tgctgattcctccattttcttctgcaaaatcgaagtttgccctattatttttcttctttttcccactgttcgcagtttgctaggtcaaagaattattcggcgctatggctgctagagctgaagaaccaatcaatgagcaagcagttgccaatgtctacagttccatgaggtctgagatcacccagatttactctaaaattactgaactagaaatggaagttagtgagcactcactcgtaatcaatgctatacaaccacttgatcctgcaaggcggtgttataggatgattggaggtgttcttgttgagagaaccatcaaggaggtccttcctgctgttcaacgcaataaggagggaattgaggaagtgatagcgcgactgaatgaagcgttggagaaaaagaaaaaggagatttcagactttgaggccaagtataaaattagaatcagaaaacctgatgaagtaaaggaggagggtgctcgaaaggaaggctctgcacaaggagtccttgttggtcctgctggttcaaatgaatagacctgtctagttttcaacttccattttgaggtactttgttgaacatggtcaaggaactaaagtactttatcatcatctttagtgtgtgatctatcatgttcatttatttttcgtgccttggcggtattttaacccaggcgatgatcgtgacattttggaaaaccttaattttatctcctcgaacattagtcaagtgttccttacctgctgagacttgtggctttttgtgctttggctatggattgtaatttttttaggttgttggagtacaattttagacgtctgaatctaattattttctcataaaaaaaaagaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4617" stop="1448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4317" g_stop="4218" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4217" i_stop="2489" i_length="1729">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2488" g_stop="1748" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="841" r_length="741" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="842" polyA_stop="861"/>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U324008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4317" e_stop="4218"/>
          <exon e_start="2488" e_stop="1748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGATTCCTCCATTTTCTTCTGCAAAATCGAAGTTTGCCCTATTATTTTTCTTCTTTTTCCCACTGTTCGCAGTTTGCTAGGTCAAAGAATTATTCGGGTAAGTCATGATTTTACTTGTTTTAGGTCTTTGAAGTTTGCTTTCTGATTTTGTGTTTTTGAGTGAATGATGATTCCTAATAATTAGGTCTTTTGTCAAATCATCTTATGAATCACTGGTCGTTTTGTGGTTAATTAAGTTCAAACCTTGTGGTTTTTGCTGTATTTTTCTTGGATTTAGTTTACTGAAGGCGCTATGCAACTGGTTTCTCATGGGTTTTAATATATTGTTTGCCTTTTAATTTATTGATTTTGAAGGGCAAAAGTATTTAGGTTTTATTGGCAATGATAAATGTCCATGGTAATTTGTAGACGATGCATATTGCAGATGTATAACCCGTGTGTGCTAATGTCAAACGAAAACATCACTAGTTTCAGGGGTAAGTGGAGATAGATCACTACATTGAGCCTTTATTGTGCAGGACTACGTTAGTGAAGAATATTTGCTAATGCTAAAGCTGCATAATCTTGATATGAGATGCTACTAAAGGGGGGTGGATTGATGGAGTGTGATCACAGCATTTACCTAACATTGGGGGTTATTCTAAGTTTCTATTCTAATAATCTTTATCCAAGTTGTTAATAGCTCAATTTACGATATCTAGTTTGGGTATGTGGGAACAAGAAGAAACATTAAATGTGACAGGTCAACCATTCGAACAATATGTTTTCGTTAAGGCATTTTAGTAAACATTAGCATTTATTCACTTGGTTCAGATAACATTATACTTTTATTTGGGAGACAACTAAATCTTATCATCTTATGGAAGGAAGATTTGATATTTTAAGAAAAATTAATAGTGCCTTTTCAACAAGGCAAGGAAAAGAAAAGAGCAATGCTAAGTTATAGATAGAACTTCAGCTGATAATAAAATATTTAGGAGTGAGGGGATGCAAGGGAAGGAGGAACATACGAAGGACAACTCTTTTCCGAAACCATTTTTAGGACTTAAATAAGCTTTGAGGTATATCATAAGACAAGTTAGAATCCAAAATTTGTGCTGTTTTTGTTCCACACATTTTTATCATTTGGACAATATGTATTAATTCTGGGTTCCTTTGTGACCGCTAGTGATGTACGCATACTAGATAATGACAACCTTTGAGGGCTAAACTGAAATCAGGGAATACTGCCAACAAATGTAAGGACTTGTTCCTGAGGAAATGTATTTGGTAGATGTTTCATTTATATAGTATTTCATATTGGCTGTGAGAGGTAAAACTTAATTTCATGGCACATATTGTTGAAAGTCTAGTCAATTGGTCTTGTGTTTTTACTGAATATCGAATAGGGATCTTGTTAATGGATATGAGAATGATTTTAGAGGCTTTTGGAGAAGACAATACAGGAGAATGATGTTTTGACGTACCATTGTTTACATGCTATCCCTTGATCAAAAGGAAAAGTTGTTCTCCACTTCTCCCTGTCAGTTAATTTTCTTCTTTGCTTCCATGCAATTCTAAGCTCCAAGAAGTCCTAGCTTCAGTTTCCCTTCCAAGCAAATGTTTTCATTTGTGTTATAATTATGCCACAGTATTTCTTGGAGGCTTTTACTGATAACATGAATTCTACTGTCCTTTTGGTTTCTCTTTTGCCCTAATAACATGAATTTATAGAGATTACCTTTGTCTTGATACGGCTTTGATATGTGATTCTTTCATCACCACTATTTGTGATTGGAGTTACTGATATAGATATGATGTTTGACACGGTCTATTTTGTGTCTCAGCGCTATGGCTGCTAGAGCTGAAGAACCAATCAATGAGCAAGCAGTTGCCAATGTCTACAGTTCCATGAGGTCTGAGATCACCCAGATTTACTCTAAAATTACTGAACTAGAAATGGAAGTTAGTGAGCACTCACTCGTAATCAATGCTATACAACCACTTGATCCTGCAAGGCGGTGTTATAGGATGATTGGAGGTGTTCTTGTTGAGAGAACCATCAAGGAGGTCCTTCCTGCTGTTCAACGCAATAAGGAGGGAATTGAGGAAGTGATAGCGCGACTGAATGAAGCGTTGGAGAAAAAGAAAAAGGAGATTTCAGACTTTGAGGCCAAGTATAAAATTAGAATCAGAAAACCTGATGAAGTAAAGGAGGAGGGTGCTCGAAAGGAAGGCTCTGCACAAGGAGTCCTTGTTGGTCCTGCTGGTTCAAATGAATAGACCTGTCTAGTTTTCAACTTCCATTTTGAGGTACTTTGTTGAACATGGTCAAGGAACTAAAGTACTTTATCATCATCTTTAGTGTGTGATCTATCATGTTCATTTATTTTTCGTGCCTTGGCGGTATTTTAACCCAGGCGATGATCGTGACATTTTGGAAAACCTTAATTTTATCTCCTCGAACATTAGTCAAGTGTTCCTTACCTGCTGAGACTTGTGGCTTTTTGTGCTTTGGCTATGGATTGTAATTTTTTTAGGTTGTTGGAGTACAATTTTAGACGTCTGAATCTAATTATTTTCTCATA</genome_strand>
        <mrna_strand>TGCTGATTCCTCCATTTTCTTCTGCAAAATCGAAGTTTGCCCTATTATTTTTCTTCTTTTTCCCACTGTTCGCAGTTTGCTAGGTCAAAGAATTATTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTATGGCTGCTAGAGCTGAAGAACCAATCAATGAGCAAGCAGTTGCCAATGTCTACAGTTCCATGAGGTCTGAGATCACCCAGATTTACTCTAAAATTACTGAACTAGAAATGGAAGTTAGTGAGCACTCACTCGTAATCAATGCTATACAACCACTTGATCCTGCAAGGCGGTGTTATAGGATGATTGGAGGTGTTCTTGTTGAGAGAACCATCAAGGAGGTCCTTCCTGCTGTTCAACGCAATAAGGAGGGAATTGAGGAAGTGATAGCGCGACTGAATGAAGCGTTGGAGAAAAAGAAAAAGGAGATTTCAGACTTTGAGGCCAAGTATAAAATTAGAATCAGAAAACCTGATGAAGTAAAGGAGGAGGGTGCTCGAAAGGAAGGCTCTGCACAAGGAGTCCTTGTTGGTCCTGCTGGTTCAAATGAATAGACCTGTCTAGTTTTCAACTTCCATTTTGAGGTACTTTGTTGAACATGGTCAAGGAACTAAAGTACTTTATCATCATCTTTAGTGTGTGATCTATCATGTTCATTTATTTTTCGTGCCTTGGCGGTATTTTAACCCAGGCGATGATCGTGACATTTTGGAAAACCTTAATTTTATCTCCTCGAACATTAGTCAAGTGTTCCTTACCTGCTGAGACTTGTGGCTTTTTGTGCTTTGGCTATGGATTGTAATTTTTTTAGGTTGTTGGAGTACAATTTTAGACGTCTGAATCTAATTATTTTCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315348" ref_strand="+" ref_description="SGN-U315348        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, similar to SF16 protein (Helianthus annuus) GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif | chr2:18115428-18118904 FORWARD | Aliases: F18O19.21(evalue: 4e-83, score=306) genbank/nr: gi|30689461|ref|NP_850399.1| SF16 protein {Helianthus annuus} -related [Arabidopsis thaliana] gi|20466712|gb|AAM20673.1| putative SF16 protein [Arabidopsis thaliana] gi|30725490|gb|AAP37767.1| At2g43680 [Arabidopsis thaliana](evalue: 3e-81, score=306)">
      <seq>agagagagaactagttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctccgagggtcgcctctccaagggttgtctctcctaaggcagcttctccaaaggttacctctcccaaggaagcttctccgaaggttacatctcccagggaagcttatccaaaggctacctctcccaaggaagcttctccgaaggttacatctcccagggaagcttatccaaaggctacctctgctagtgctccttccctaaaggctctctctcctagggaagcttctccaaaggcgaactctgctagtgctccttcccagaaggctactgctcccaaggaggcttctccaagggtctcttcccctagatctacttatccagagccgagtaggaaccataatgagattagctatgctaacaggccagaagcaactttgacgctccatctttcagcaaccaagatacaggcagcctacagaagttacatggcaaggaggggtttcaaatctttgagtggtttagcaagacttcaaggagtggtcagaagcagaagtgtaaagcggcagacagtaaatgccatgaaacaaatgcaacttctaggtagggttcaaatgcaaattcagtcaaggagaagtcagatgttccaggcactccatagtcaagcttacatgaatgataaagaagttgagagcactctaagcaaatggactcagctgactgaagcaggtaaccatgatgattggaataatagtatgctaactaaagatgaggtagaagcaaggcgacgggaaaaagtggaggcagtcatcaagagggagagagcaatgagctatgcatattctcaccagttgtggagacgcaaccccaaatcagctacggacatccgaaccagtggaattccttggtggtggaactggttgcaccaccagctacttccaggaaatgattccgagagccaatctgctgtaaaagatgtccattcaacaccatcaagggcaatatccgaacacaagccaagtccatggcgtctaagtcaaaacttcagacacctccatttggattatgacagtcatgaatcagttacaccaaggtcaactaagtctgcagttccattaaggggaaaactaatgcatactcccagaagaacatcatcaccaatgagcagctcaagcgtatcaaagtattcaagacgccgtgctagtgctgctgattcccctttcaatcattccatgaaggatgacgacagcctcacgagctgtcctcctttttcaggtcctagttacatgtcaccaaccatctcagccaaagctaaattcagaggaaaaaccattcttgaggagagaaatataggtactccatcaaacagctcgaggaggaggctgtcgtttcctttgactccaagtagtactggatccgtcaagtggaacaaaggatctggaaaggatgccgcttctttaaaggaacatgaatctatgggagatcatatgagtgtgcattctactggttcgacgcctactatagttgggaggaaaccatttcaaagatttgtgtaattttgttccctgtatgttgtcccatctgtatttagctctgaagttacctatgtatgtgtatttattggtgtattttgttaacagaacactaatgtaaaataattaagtgtgaacattctcttgtttgttagacttatctagtgaaggaagaaaggataattagtatattttaaagttggatctctctctacttgtactcttttatgctaaatcatgttattgctaactttatgtggtcaccgatggacggtgaatgatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12663" stop="6020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12512" g_stop="12489" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="128" r_length="21" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12488" i_stop="12298" i_length="191">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.51"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12297" g_stop="11852" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="577" r_length="449" r_score="0.888"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11851" i_stop="10591" i_length="1261">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10590" g_stop="10363" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="805" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10362" i_stop="10007" i_length="356">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10006" g_stop="9875" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="937" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9874" i_stop="7287" i_length="2588">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7286" g_stop="6319" g_length="968"/>
          <reference_exon_boundary r_type="cDNA" r_start="938" r_stop="1905" r_length="968" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U315348" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>1798</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12512" e_stop="12489"/>
          <exon e_start="12297" e_stop="11852"/>
          <exon e_start="10590" e_stop="10363"/>
          <exon e_start="10006" e_stop="9875"/>
          <exon e_start="7286" e_stop="6319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCC-TCAG-AGT-TCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATGGTAAGATACAAGATAACTCCTTCATCAATGTTTTGCTGAAAATAGCCTTTAAGAATACTACTTGATTTTGTGAGTTGGCCAGATCTTGAGTGATAAGTCATAGGTCATGTTATTGCAAACTCATGATATATTGGTAACAATTATGTCATTGTTGAAACAACTTTAATAGTCTCCCAAGTAATCATTTCCATGTCTCCTGCAACTATTTGTTATTGCCGAAGGCGAGCATCAAGCTGAGAGAGTAGATCAATTATGTGAAAAGCTTTATGCTTTGTTAAAGACTTATGGCTCTCTTAGTCTAAAATTTAGGTGTTTCTTATGTGCGGAGACTCCCTGCTGTGTGTTAGAGAACTGGTAACAGGTAAATAAATTTCTAACCCTTCGATTAAAGCTCTGGATGAGTTCATTCAGTGGTCTCAGGGTGCATTTCTACCTAAGAAGTTTGTTTCTACCACAATCAGTATCTTGTTATTGCATTTTCACTTGATCCTTAGAAATGCTTTGACCTTTTATCATTAAGATTTTCCTTGTGATAGTTTTACCTGAGAATTTGATCTTCACGATTCCTTCTTAGTTCTTAAATGCTGAGCTTCCTCAATATTATATTTGACTGATTATTTAAAAGGTCACTTTCCTTGTCTGAGAACTCCATTTTTCTTTTCGAATTTTTGACAAAAATTAAGTTACATGCAGATTATCTGAAACGGGATACGAAAAAAAGAGATTTGAACTTTTGTATATGTAATTGGGACCCCCAATCTTTTCGTATGCTGTTTTCAAGAACCCATTTCCAGTCCTAATGACTTTACTGCTAGAGTAGTTTTCCTCAATGTCTTAATTATACTCTTGAACCATGGAAACTATGACTCCTGGACACTGCAGAACCTGAATTCTTAATTCTTGATTTAAAAAAAAACATGGAAATACAGAGTCTGCATTCATCTGTCATAAGCATCTTGAAAATTCGAGTAATTTTGTTCTTATCAACTTGTTAGAAAAACTTCTTATGTCAAAGAAAACAATATAGGATCTTATGTTATCATTATTATTTCCCTTGTCGTGATTCAAGTAGGAGTGAATAGAAGTTCATTGCTTTATATAATTTTTTTATTTTTTTATAAAAAAGAACCATAGGAGTCCTTTCCCATTTTCTCCCCTTTCTAGAGTAGGTCATTGATGGGACACGAATGTTTGGTTCAGAGAGTGTATCAATTGCTAACAAGTTTTACATATCCTATGTGAATGAACTTTGTTTTCACAGGCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATGCAAATTCAGTCAAGGAGAAGTCAGATGTTCCAGGCACTCCATAGTCAAGCTTACATGAATGATAAAGAAGTTGAGAGCACTCTAAGCAAATGGACTCAGCTGGTAAGTTTAAGCTGCTACATATCTTGTGGTATTCACCTATTTAGTGGTATAGGCCGATGCCATATTTTGGAGGCACTGTTCGCCTACATTATTTAGTAGATTCAATTTGGGTCATTTAAATTGGGTAATGTTCCTCATTATTGGTGCTTTGATTATCTTGTGAAAGATTTGATGGATTCTTCCACTGGTCAAAGATGGTACGCAGCTTCTTCAACAATTCCAATTTAGGTTCTAGGAATTCATTTTTGTACATATATTGTAGTGTAAGGATATGAGAGTTGTTGAACAAAATTTCTTTTCGTCTTTGAACATTTTTTGAATTACGTTTGATGTTAAAAAGGAAATTTTGTTTTTAGACTGAAGCAGGTAACCATGATGATTGGAATAATAGTATGCTAACTAAAGATGAGGTAGAAGCAAGGCGACGGGAAAAAGTGGAGGCAGTCATCAAGAGGGAGAGAGCAATGAGCTATGCATATTCTCACCAGGTACATTAGACTTGCGTTCTTAAGCATTTAAAATCTATGGTAACCATCGCGTAAATGTGCTTTTGATAATGCAGATATGTATCATTCTGTTTCATGCTTATTGTTGACACCCAATTTTGGCCTAACATTTTAAAGATTCATACCTTTTAAGTTTTATTAATTCAATAGTACAAAATACATTATTTACAATTTTAAATAACTCTTATCATTTTTATCCTTATTTCTCAAAATTTAGATTTTTATGAGTTAGTTTTTTAATTACATTATTTTTTGTAACAATCAATTGAATATATTATGAATATTGTGTCTTTGATTAAATCACTATTTTATGGTAAATTACATTTTTTTACATGCCATTTTTTTTTTTGGATAATAAAATTAAATGATATTAGAAAGCATCAAGAAGATGCGAAGTTACAAAAGCACAGTGTGCAAGAAAGCTGCTCCAAACAGAAAAATATGGAGCTATCTTGGCAAAAACTAGTGAAAACAGTCAATAGGGAACCCTACTACTCTACCCTTCTAGAGATAGGGAACTTACAAAATCCATTTTTTATTTGTTACTTCTACTTAAATCCATTTTGATGTTTTTAGCTGAGTCTAGAAATACAATTAAATACATAAAAGATTGCACACACAAATATTTTATTAGCTAGTGGTTTTAGCCCACGACTTTTAAGATAATGGTATTGTACTAAGGCGAATTTCAATTTTCTATTGAAACAATTTCTTAGTCATTAAGTTAGTGGTGGTGGATAATATTTTAGATAATGGCTGTAATTTTCAGATTTTTTAGTCTTTAAGAAACTTTTTTAGTGTTAGTATTTTCTTGGCAAACTTTTCGCCGGAGCTTCGCCTAGTCCACCACCAAAAGACCCCAACCATTTAGCCTTTTCTTTGTTATTTTCGGTTCTAACCGGAGGTTCCAACTCTTGCAAAACCCCTTTTGGTTTTATCTTTTTTTTTTTCTGTAGCAAACAACAAGCTACCAGTGATACCATACAACCACCAAAACGAAGTAAACCAGAACCTCAACCCACCTTTCTCTCCATTTCTTCCTCCACGTTGGAAGTCACCAAACACCCCCTTTTCTTGCACCTGAAACCGGGCGAGCTCACACCAGAGAATTCTGTTTACATCCCTACTTTATTCATATAAGAAGAAACATCTTGGTGACACAAAAATAATCAATTTATTCAATTCAATTAAACTTAAAAGAATTTTAGGAATAAACAAAATTTAAGGGAGTTGCCATCTAATTTTAGGAAAACTAGGAAACTACTTAAATGATCTACGAAACCAATAGATTCTAGGTAAGGGTTCAAGTAATTTCGAAGGAAAGGTGTTAGGCATCCTTCGAAGTTCACAATTGTGGGTCCAGACTCCAGACTGAATTTATTTTTTCAAATTGAGGAAGAGATAACAATAATATACAACTATGATAAAAATGCTATATACACAAATAATAAAATATTGCTATAATATGATAAACAGCCTAAGCTTGCCTAGCTTCAATTATACAAAATAATGAATAAAGAATATAATTCGAAGTTCGTTCGAATAGCTTCAATGGGAAGCAACTCTGGGTACCTATAAAGATGATGAATAATAATAAGAATTTTAAAATGTTACCTTCTCAAAAAAAAAAAAAAGAACTTAAAAAATTTCTAAATTACACCCCAAGTATGTAAACCTTATTCACCACCACTAACTTAATGGCCAAGAAATTCTTTAAATAGAAAATTGAAAGCCGTCTTAGTACAATACCACTATCTTAAAATCGTGGGCTAAAACCACTGGTTATAAAATATCTGTGTATGCAATCTTATCCGTATTTGAATGTATTTCTAGACTGCGCTAAAAACATAAAAAATAAATATTAATAAAAGTAACAAATAAAATAAATATTAATAGATTGTGACAAATAAAATGAATGACATATAAAAAATGCAATTTCATAATAAATAATGATTTAATCGAAGATACGATGTTCACAACATTGTGACACGAAAGAATAACTAAAATTAACTCATAAAAACCTGAAATTATGAGAAATAAGGATAAATATCGATAAAATTGTAAAAATGTATTTTGAACAATTGAATAAATAAAATTCACAAGGTACTGGAAAATGTTAAGCCAAAATTGGGTGTCAACACTTGTCACTTCCTTTATGTTGTACAAATCCTGGTATTAAGGGCATCATAACAATTTCTATCTGTCTATGGCCAAGTTATTGAGACATTTCTTTAGTGGTTCTCTTTCTTACCAAATCTTTTATCTAATGTGAATCCTGGTACTAAGTGCATCATAATAATCTCTCAGTTTGTTGCTTTTGACTAGTCTTTCATATTATCAAACTAAGATGCGCTTGTGCAAATTACAAGAACGTCAAAACTTTCAATTTTCTTGTTTCAACTTCCCATTAGTGATTCTGGCAAGAAACCGTTAGGTAAAACACATAATATCTCAATTGGTTCAAAGTACTTTATCATTATTTGTTATTCTTGGCCAAGACATGTTGACAAACTCTATACTTCTATTAGCCTTATATACGGCTTACCATGTTGCATACCTCTTTTTAATAGTTGTGGAGACGCAACCCCAAATCAGCTACGGACATCCGAACCAGTGGAATTCCTTGGTGGTGGAACTGGTTGCACCACCAGCTACTTCCAGGAAATGATTCCGAGAGCCAATCTGCTGTAAAAGATGTCCATTCAACACCATCAAGGGCAATATCCGAACACAAGCCAAGTCCATGGCGTCTAAGTCAAAACTTCAGACACCTCCATTTGGATTATGACAGTCATGAATCAGTTACACCAAGGTCAACTAAGTCTGCAGTTCCATTAAGGGGAAAACTAATGCATACTCCCAGAAGAACATCATCACCAATGAGCAGCTCAAGCGTATCAAAGTATTCAAGACGCCGTGCTAGTGCTGCTGATTCCCCTTTCAATCATTCCATGAAGGATGACGACAGCCTCACGAGCTGTCCTCCTTTTTCAGGTCCTAGTTACATGTCACCAACCATCTCAGCCAAAGCTAAATTCAGAGGAAAAACCATTCTTGAGGAGAGAAATATAGGTACTCCATCAAACAGCTCGAGGAGGAGGCTGTCGTTTCCTTTGACTCCAAGTAGTACTGGATCCGTCAAGTGGAACAAAGGATCTGGAAAGGATGCCGCTTCTTTAAAGGAACATGAATCTATGGGAGATCATATGAGTGTGCATTCTACTGGTTCGACGCCTACTATAGTTGGGAGGAAACCATTTCAAAGATTTGTGTAATTTTGTTCCCTGTATGTTGTCCCATCTGTATTTAGCTCTGAAGTTACCTATGTATGTGTATTTATTGGTGTATTTTGTTAACAGAACACTAATGTAAAATAATTAAGTGTGAACATTCTCTTGTTTGTTAGACTTATCTAGTGAAGGAAGAAAGGATAATTAGTATATTTTAAAGTTGGATCTCTCTCTACTTGTACTCTTTTATGCTAAATCATGTTATTGCTAACTTTATGTGGTCACCGATGGACGGTGAATGATGATTC</genome_strand>
        <mrna_strand>CT-CCTCAGA-G-TTCTTATAGGG...............................................................................................................................................................................................CTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATGCAAATTCAGTCAAGGAGAAGTCAGATGTTCCAGGCACTCCATAGTCAAGCTTACATGAATGATAAAGAAGTTGAGAGCACTCTAAGCAAATGGACTCAGCTG....................................................................................................................................................................................................................................................................................................................................................................ACTGAAGCAGGTAACCATGATGATTGGAATAATAGTATGCTAACTAAAGATGAGGTAGAAGCAAGGCGACGGGAAAAAGTGGAGGCAGTCATCAAGAGGGAGAGAGCAATGAGCTATGCATATTCTCACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGAGACGCAACCCCAAATCAGCTACGGACATCCGAACCAGTGGAATTCCTTGGTGGTGGAACTGGTTGCACCACCAGCTACTTCCAGGAAATGATTCCGAGAGCCAATCTGCTGTAAAAGATGTCCATTCAACACCATCAAGGGCAATATCCGAACACAAGCCAAGTCCATGGCGTCTAAGTCAAAACTTCAGACACCTCCATTTGGATTATGACAGTCATGAATCAGTTACACCAAGGTCAACTAAGTCTGCAGTTCCATTAAGGGGAAAACTAATGCATACTCCCAGAAGAACATCATCACCAATGAGCAGCTCAAGCGTATCAAAGTATTCAAGACGCCGTGCTAGTGCTGCTGATTCCCCTTTCAATCATTCCATGAAGGATGACGACAGCCTCACGAGCTGTCCTCCTTTTTCAGGTCCTAGTTACATGTCACCAACCATCTCAGCCAAAGCTAAATTCAGAGGAAAAACCATTCTTGAGGAGAGAAATATAGGTACTCCATCAAACAGCTCGAGGAGGAGGCTGTCGTTTCCTTTGACTCCAAGTAGTACTGGATCCGTCAAGTGGAACAAAGGATCTGGAAAGGATGCCGCTTCTTTAAAGGAACATGAATCTATGGGAGATCATATGAGTGTGCATTCTACTGGTTCGACGCCTACTATAGTTGGGAGGAAACCATTTCAAAGATTTGTGTAATTTTGTTCCCTGTATGTTGTCCCATCTGTATTTAGCTCTGAAGTTACCTATGTATGTGTATTTATTGGTGTATTTTGTTAACAGAACACTAATGTAAAATAATTAAGTGTGAACATTCTCTTGTTTGTTAGACTTATCTAGTGAAGGAAGAAAGGATAATTAGTATATTTTAAAGTTGGATCTCTCTCTACTTGTACTCTTTTATGCTAAATCATGTTATTGCTAACTTTATGTGGTCACCGATGGACGGTGAATGATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315347" ref_strand="+" ref_description="SGN-U315347        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, similar to SF16 protein (Helianthus annuus) GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif | chr3:22059731-22062650 FORWARD | Aliases: T16L24.240(evalue: 1e-88, score=324) genbank/nr: gi|15231733|ref|NP_191528.1| expressed protein [Arabidopsis thaliana] gi|11292163|pir||T49310 hypothetical protein T16L24.240 - Arabidopsis thaliana gi|6996305|emb|CAB75466.1| putative protein [Arabidopsis thaliana] gi|22135900|gb|AAM91532.1| putative protein [Arabidopsis thaliana] gi|24899697|gb|AAN65063.1| putative protein [Arabidopsis thaliana](evalue: 1e-86, score=324)">
      <seq>gaagaggttaataaactgtggaagcaacaaagaagcagattctttgtatatataattgggtaattagactaaaaaaaaagagtctaaaaggagcaccaagtttatggtagtattagtataactaagtggaggaagaaaagggagagagattctagagagagaagggtagctcaagttttgcttttgggtttcttgttggacttggctttttggctttggtttcagctttttctctgaaagggggttttaatggaggactttaaacataacttgagggtgacacagtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctccgagggtcgcctctccaagggttgtctctcctaaggcagcttctccaaaggttacctctcccaaggaagcttctccgaaggttacatctcccagggaagcttatccaaaggctacctctgctagtgctccttccctaaaggctctctctcctagggaagcttctccaaaggcgaactctgctagtgctccttcccagaaggctactgctcccaaggaggcttctccaagggtctcttcccctagatctacttatccagagccgagtaggaaccataatgagattagctatgctaacaggccagaagcaactttgacgctccatctttcagcaaccaagatacaggcagcctacagaagttacatggcaaggaggggtttcaaatctttgagtggtttagcaagacttcaaggagtggtcagaagcagaagtgtaaagcggcagacagtaaatgccatgaaacaaatgcaacttctaggtagggttcaaatgcaaattcagtcaaggagaagtcagatgttccaggcactccatagtcaagcttacatgaatgataaagaagttgagagcactctaagcaaatggactcagctgactgaagcaggtaaccatgatgattggaataatagtatgctaactaaagatgaggtagaagcaaggcgacgggaaaaagtggaggcagtcatcaagagggagagagcaatgagctatgcatattctcaccagttgtggagacgcaaccccaaatcagctacggacatccgaaccagtggaattccttggtggtggaactggttgcaccaccagctacttccaggaaatgattccgagagccaatctgctgtaaaagatgtccattcaacaccatcaagggcaatatccgaacacaagccaagtccatggcgtctaagtcaaaacttcagacacctccatttggattatgacagtcatgaatcagttacaccaaggtcaactaagtctgcagttccattaaggggaaaactaatgcatactcccagaagaacatcatcaccaatgagcagctcaagcgtatcaaagtattcaagacgccgtgctagtgctgctgattcccctttcaatcattccatgaaggatgacgacagcctcacgagctgtcctcctttttcaggtcctagttacatgtcaccaaccatctcagccaaagctaaattcagaggaaaaaccattcttgaggagagaaatataggtactccatcaaacagctcgaggaggaggctgtcgtttcctttgactccaagtagtactggatccgtcaagtggaacaaaggatctggaaaggatgccgcttctttaaaggaacatgaatctatgggagatcatatgagtgtgcattctactggttcgacgcctactatagttgggaggaaaccatttcaaagatttgtgtaattttgttccctgtatgttgtcccatctgtatttagctctgaagttacctatgtatgtgtatttattggtgtattttgttaacagaacactaatgtaaaataattaagtgtgaacattctcttgtttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14628" stop="6152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14328" g_stop="14054" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="12909" i_length="1145">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12908" g_stop="12811" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="373" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12810" i_stop="12491" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12490" g_stop="11852" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="1012" r_length="639" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11851" i_stop="10591" i_length="1261">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10590" g_stop="10363" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1013" r_stop="1240" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10362" i_stop="10007" i_length="356">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10006" g_stop="9875" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1241" r_stop="1372" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9874" i_stop="7287" i_length="2588">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7286" g_stop="6452" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1373" r_stop="2207" r_length="835" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U315347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14328" e_stop="14054"/>
          <exon e_start="12908" e_stop="12811"/>
          <exon e_start="12490" e_stop="11852"/>
          <exon e_start="10590" e_stop="10363"/>
          <exon e_start="10006" e_stop="9875"/>
          <exon e_start="7286" e_stop="6452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGTTAATAAACTGTGGAAGCAACAAAGAAGCAGATTCTTTGTATATATAATTGGGTAATTAGACTAAAAAAAAAGAGTCTAAAAGGAGCACCAAGTTTATGGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAGGTATTTGGGGTTTCTATCTTTCATAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTTTCCTTTATTCATTTTTTGGTTTTCCCATTTCTATGTGGTGAATAATTTTCCTCTCCCTTGATCAACTTATGACAGCTAAATGTGTGAATCCCAAATTTGAACTTATGGAAATATCTTCTTTAAATAATACTGATGACTTTACTTCAAGATGCTTATCAACAAGGGGACCTAACTGAGTAAATTAGATGATTTGCAAATTTTTGATGTATTTGGTTTTAGGTGCGCAATCTATGTTTTTTATGGAGTGCTTGCGTTGCATTCTCCGAGGCGGCTCGAAATGCCTCTATCTTGGGTTTCGTTCTAGAATATCTCTGTTCAATACAATGAGTGTATGAAGTTGCTTTCGCACTGCATGTGTTCAATTAAGTTCTTTTTGAATGACAATTACGTTAAGTTTCCTTCTCTTTCAGGGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATGGTAAGATACAAGATAACTCCTTCATCAATGTTTTGCTGAAAATAGCCTTTAAGAATACTACTTGATTTTGTGAGTTGGCCAGATCTTGAGTGATAAGTCATAGGTCATGTTATTGCAAACTCATGATATATTGGTAACAATTATGTCATTGTTGAAACAACTTTAATAGTCTCCCAAGTAATCATTTCCATGTCTCCTGCAACTATTTGTTATTGCCGAAGGCGAGCATCAAGCTGAGAGAGTAGATCAATTATGTGAAAAGCTTTATGCTTTGTTAAAGACTTATGGCTCTCTTAGTCTAAAATTTAGGTGTTTCTTATGTGCGGAGACTCCCTGCTGTGTGTTAGAGAACTGGTAACAGGTAAATAAATTTCTAACCCTTCGATTAAAGCTCTGGATGAGTTCATTCAGTGGTCTCAGGGTGCATTTCTACCTAAGAAGTTTGTTTCTACCACAATCAGTATCTTGTTATTGCATTTTCACTTGATCCTTAGAAATGCTTTGACCTTTTATCATTAAGATTTTCCTTGTGATAGTTTTACCTGAGAATTTGATCTTCACGATTCCTTCTTAGTTCTTAAATGCTGAGCTTCCTCAATATTATATTTGACTGATTATTTAAAAGGTCACTTTCCTTGTCTGAGAACTCCATTTTTCTTTTCGAATTTTTGACAAAAATTAAGTTACATGCAGATTATCTGAAACGGGATACGAAAAAAAGAGATTTGAACTTTTGTATATGTAATTGGGACCCCCAATCTTTTCGTATGCTGTTTTCAAGAACCCATTTCCAGTCCTAATGACTTTACTGCTAGAGTAGTTTTCCTCAATGTCTTAATTATACTCTTGAACCATGGAAACTATGACTCCTGGACACTGCAGAACCTGAATTCTTAATTCTTGATTTAAAAAAAAACATGGAAATACAGAGTCTGCATTCATCTGTCATAAGCATCTTGAAAATTCGAGTAATTTTGTTCTTATCAACTTGTTAGAAAAACTTCTTATGTCAAAGAAAACAATATAGGATCTTATGTTATCATTATTATTTCCCTTGTCGTGATTCAAGTAGGAGTGAATAGAAGTTCATTGCTTTATATAATTTTTTTATTTTTTTATAAAAAAGAACCATAGGAGTCCTTTCCCATTTTCTCCCCTTTCTAGAGTAGGTCATTGATGGGACACGAATGTTTGGTTCAGAGAGTGTATCAATTGCTAACAAGTTTTACATATCCTATGTGAATGAACTTTGTTTTCACAGGCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATGCAAATTCAGTCAAGGAGAAGTCAGATGTTCCAGGCACTCCATAGTCAAGCTTACATGAATGATAAAGAAGTTGAGAGCACTCTAAGCAAATGGACTCAGCTGGTAAGTTTAAGCTGCTACATATCTTGTGGTATTCACCTATTTAGTGGTATAGGCCGATGCCATATTTTGGAGGCACTGTTCGCCTACATTATTTAGTAGATTCAATTTGGGTCATTTAAATTGGGTAATGTTCCTCATTATTGGTGCTTTGATTATCTTGTGAAAGATTTGATGGATTCTTCCACTGGTCAAAGATGGTACGCAGCTTCTTCAACAATTCCAATTTAGGTTCTAGGAATTCATTTTTGTACATATATTGTAGTGTAAGGATATGAGAGTTGTTGAACAAAATTTCTTTTCGTCTTTGAACATTTTTTGAATTACGTTTGATGTTAAAAAGGAAATTTTGTTTTTAGACTGAAGCAGGTAACCATGATGATTGGAATAATAGTATGCTAACTAAAGATGAGGTAGAAGCAAGGCGACGGGAAAAAGTGGAGGCAGTCATCAAGAGGGAGAGAGCAATGAGCTATGCATATTCTCACCAGGTACATTAGACTTGCGTTCTTAAGCATTTAAAATCTATGGTAACCATCGCGTAAATGTGCTTTTGATAATGCAGATATGTATCATTCTGTTTCATGCTTATTGTTGACACCCAATTTTGGCCTAACATTTTAAAGATTCATACCTTTTAAGTTTTATTAATTCAATAGTACAAAATACATTATTTACAATTTTAAATAACTCTTATCATTTTTATCCTTATTTCTCAAAATTTAGATTTTTATGAGTTAGTTTTTTAATTACATTATTTTTTGTAACAATCAATTGAATATATTATGAATATTGTGTCTTTGATTAAATCACTATTTTATGGTAAATTACATTTTTTTACATGCCATTTTTTTTTTTGGATAATAAAATTAAATGATATTAGAAAGCATCAAGAAGATGCGAAGTTACAAAAGCACAGTGTGCAAGAAAGCTGCTCCAAACAGAAAAATATGGAGCTATCTTGGCAAAAACTAGTGAAAACAGTCAATAGGGAACCCTACTACTCTACCCTTCTAGAGATAGGGAACTTACAAAATCCATTTTTTATTTGTTACTTCTACTTAAATCCATTTTGATGTTTTTAGCTGAGTCTAGAAATACAATTAAATACATAAAAGATTGCACACACAAATATTTTATTAGCTAGTGGTTTTAGCCCACGACTTTTAAGATAATGGTATTGTACTAAGGCGAATTTCAATTTTCTATTGAAACAATTTCTTAGTCATTAAGTTAGTGGTGGTGGATAATATTTTAGATAATGGCTGTAATTTTCAGATTTTTTAGTCTTTAAGAAACTTTTTTAGTGTTAGTATTTTCTTGGCAAACTTTTCGCCGGAGCTTCGCCTAGTCCACCACCAAAAGACCCCAACCATTTAGCCTTTTCTTTGTTATTTTCGGTTCTAACCGGAGGTTCCAACTCTTGCAAAACCCCTTTTGGTTTTATCTTTTTTTTTTTCTGTAGCAAACAACAAGCTACCAGTGATACCATACAACCACCAAAACGAAGTAAACCAGAACCTCAACCCACCTTTCTCTCCATTTCTTCCTCCACGTTGGAAGTCACCAAACACCCCCTTTTCTTGCACCTGAAACCGGGCGAGCTCACACCAGAGAATTCTGTTTACATCCCTACTTTATTCATATAAGAAGAAACATCTTGGTGACACAAAAATAATCAATTTATTCAATTCAATTAAACTTAAAAGAATTTTAGGAATAAACAAAATTTAAGGGAGTTGCCATCTAATTTTAGGAAAACTAGGAAACTACTTAAATGATCTACGAAACCAATAGATTCTAGGTAAGGGTTCAAGTAATTTCGAAGGAAAGGTGTTAGGCATCCTTCGAAGTTCACAATTGTGGGTCCAGACTCCAGACTGAATTTATTTTTTCAAATTGAGGAAGAGATAACAATAATATACAACTATGATAAAAATGCTATATACACAAATAATAAAATATTGCTATAATATGATAAACAGCCTAAGCTTGCCTAGCTTCAATTATACAAAATAATGAATAAAGAATATAATTCGAAGTTCGTTCGAATAGCTTCAATGGGAAGCAACTCTGGGTACCTATAAAGATGATGAATAATAATAAGAATTTTAAAATGTTACCTTCTCAAAAAAAAAAAAAAGAACTTAAAAAATTTCTAAATTACACCCCAAGTATGTAAACCTTATTCACCACCACTAACTTAATGGCCAAGAAATTCTTTAAATAGAAAATTGAAAGCCGTCTTAGTACAATACCACTATCTTAAAATCGTGGGCTAAAACCACTGGTTATAAAATATCTGTGTATGCAATCTTATCCGTATTTGAATGTATTTCTAGACTGCGCTAAAAACATAAAAAATAAATATTAATAAAAGTAACAAATAAAATAAATATTAATAGATTGTGACAAATAAAATGAATGACATATAAAAAATGCAATTTCATAATAAATAATGATTTAATCGAAGATACGATGTTCACAACATTGTGACACGAAAGAATAACTAAAATTAACTCATAAAAACCTGAAATTATGAGAAATAAGGATAAATATCGATAAAATTGTAAAAATGTATTTTGAACAATTGAATAAATAAAATTCACAAGGTACTGGAAAATGTTAAGCCAAAATTGGGTGTCAACACTTGTCACTTCCTTTATGTTGTACAAATCCTGGTATTAAGGGCATCATAACAATTTCTATCTGTCTATGGCCAAGTTATTGAGACATTTCTTTAGTGGTTCTCTTTCTTACCAAATCTTTTATCTAATGTGAATCCTGGTACTAAGTGCATCATAATAATCTCTCAGTTTGTTGCTTTTGACTAGTCTTTCATATTATCAAACTAAGATGCGCTTGTGCAAATTACAAGAACGTCAAAACTTTCAATTTTCTTGTTTCAACTTCCCATTAGTGATTCTGGCAAGAAACCGTTAGGTAAAACACATAATATCTCAATTGGTTCAAAGTACTTTATCATTATTTGTTATTCTTGGCCAAGACATGTTGACAAACTCTATACTTCTATTAGCCTTATATACGGCTTACCATGTTGCATACCTCTTTTTAATAGTTGTGGAGACGCAACCCCAAATCAGCTACGGACATCCGAACCAGTGGAATTCCTTGGTGGTGGAACTGGTTGCACCACCAGCTACTTCCAGGAAATGATTCCGAGAGCCAATCTGCTGTAAAAGATGTCCATTCAACACCATCAAGGGCAATATCCGAACACAAGCCAAGTCCATGGCGTCTAAGTCAAAACTTCAGACACCTCCATTTGGATTATGACAGTCATGAATCAGTTACACCAAGGTCAACTAAGTCTGCAGTTCCATTAAGGGGAAAACTAATGCATACTCCCAGAAGAACATCATCACCAATGAGCAGCTCAAGCGTATCAAAGTATTCAAGACGCCGTGCTAGTGCTGCTGATTCCCCTTTCAATCATTCCATGAAGGATGACGACAGCCTCACGAGCTGTCCTCCTTTTTCAGGTCCTAGTTACATGTCACCAACCATCTCAGCCAAAGCTAAATTCAGAGGAAAAACCATTCTTGAGGAGAGAAATATAGGTACTCCATCAAACAGCTCGAGGAGGAGGCTGTCGTTTCCTTTGACTCCAAGTAGTACTGGATCCGTCAAGTGGAACAAAGGATCTGGAAAGGATGCCGCTTCTTTAAAGGAACATGAATCTATGGGAGATCATATGAGTGTGCATTCTACTGGTTCGACGCCTACTATAGTTGGGAGGAAACCATTTCAAAGATTTGTGTAATTTTGTTCCCTGTATGTTGTCCCATCTGTATTTAGCTCTGAAGTTACCTATGTATGTGTATTTATTGGTGTATTTTGTTAACAGAACACTAATGTAAAATAATTAAGTGTGAACATTCTCTTGTTTGTTA</genome_strand>
        <mrna_strand>GAAGAGGTTAATAAACTGTGGAAGCAACAAAGAAGCAGATTCTTTGTATATATAATTGGGTAATTAGACTAAAAAAAAAGAGTCTAAAAGGAGCACCAAGTTTATGGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATGCAAATTCAGTCAAGGAGAAGTCAGATGTTCCAGGCACTCCATAGTCAAGCTTACATGAATGATAAAGAAGTTGAGAGCACTCTAAGCAAATGGACTCAGCTG....................................................................................................................................................................................................................................................................................................................................................................ACTGAAGCAGGTAACCATGATGATTGGAATAATAGTATGCTAACTAAAGATGAGGTAGAAGCAAGGCGACGGGAAAAAGTGGAGGCAGTCATCAAGAGGGAGAGAGCAATGAGCTATGCATATTCTCACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGAGACGCAACCCCAAATCAGCTACGGACATCCGAACCAGTGGAATTCCTTGGTGGTGGAACTGGTTGCACCACCAGCTACTTCCAGGAAATGATTCCGAGAGCCAATCTGCTGTAAAAGATGTCCATTCAACACCATCAAGGGCAATATCCGAACACAAGCCAAGTCCATGGCGTCTAAGTCAAAACTTCAGACACCTCCATTTGGATTATGACAGTCATGAATCAGTTACACCAAGGTCAACTAAGTCTGCAGTTCCATTAAGGGGAAAACTAATGCATACTCCCAGAAGAACATCATCACCAATGAGCAGCTCAAGCGTATCAAAGTATTCAAGACGCCGTGCTAGTGCTGCTGATTCCCCTTTCAATCATTCCATGAAGGATGACGACAGCCTCACGAGCTGTCCTCCTTTTTCAGGTCCTAGTTACATGTCACCAACCATCTCAGCCAAAGCTAAATTCAGAGGAAAAACCATTCTTGAGGAGAGAAATATAGGTACTCCATCAAACAGCTCGAGGAGGAGGCTGTCGTTTCCTTTGACTCCAAGTAGTACTGGATCCGTCAAGTGGAACAAAGGATCTGGAAAGGATGCCGCTTCTTTAAAGGAACATGAATCTATGGGAGATCATATGAGTGTGCATTCTACTGGTTCGACGCCTACTATAGTTGGGAGGAAACCATTTCAAAGATTTGTGTAATTTTGTTCCCTGTATGTTGTCCCATCTGTATTTAGCTCTGAAGTTACCTATGTATGTGTATTTATTGGTGTATTTTGTTAACAGAACACTAATGTAAAATAATTAAGTGTGAACATTCTCTTGTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335111" ref_strand="+" ref_description="SGN-U335111        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, similar to SF16 protein (Helianthus annuus) GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif | chr3:22059731-22062650 FORWARD | Aliases: T16L24.240(evalue: 2e-37, score=153) genbank/nr: gi|15231733|ref|NP_191528.1| expressed protein [Arabidopsis thaliana] gi|11292163|pir||T49310 hypothetical protein T16L24.240 - Arabidopsis thaliana gi|6996305|emb|CAB75466.1| putative protein [Arabidopsis thaliana] gi|22135900|gb|AAM91532.1| putative protein [Arabidopsis thaliana] gi|24899697|gb|AAN65063.1| putative protein [Arabidopsis thaliana](evalue: 2e-35, score=153)">
      <seq>agtaatgctagaaacatgggggaaaaaggcagttggttttatgccctcaaaagggtttttacgtgtaactccaagaagaagtctgcctatggatcagggaagaaaactgcaaaggaaaagaagaagggtcgtagaatactgaggcatggagagttcaaatcattcctcttcagagaaccaagcagtattgagaaaatactgggtgaggttgatgatcagaacctacttgttaggcctcctacttctgaacaatctggcattccatctgcattccctgtggcaccaacttctccaagaatcaattcacctagagatgcgtctcctcagagttcttatagggctacatctcctggtgtcacttctccgagggtcgcctctccaagggttgtctctcctaaggaagcttatccaaaggctacctctgctagtgctccttccctaaaggctctctctcctagggaagcttctccaaaggcgaactctgctagtgctccttcccagaaggctactgctcccaaggaggcttctccaagggtctcttcccctagatctacttatccagagccgagtaggaaccataatgagattagctatgctaacaggccagaagcaactttgacgctccatctttcagcaaccaagatacaggcagcctacagaagttacatggcaaggaggggtttcaaatctttgagtggtttagcaagacttcaaggagtggtcagaagcagaagtgtaaagcggcagacagtaaatgccatgaaacaaatgcaacttctaggtagggttcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13200" stop="10165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12900" g_stop="12811" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12810" i_stop="12491" i_length="320">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12490" g_stop="12183" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="398" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12182" i_stop="12123" i_length="60">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12122" g_stop="11852" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="669" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11851" i_stop="10591" i_length="1261">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10590" g_stop="10465" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="795" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U335111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12900" e_stop="12811"/>
          <exon e_start="12490" e_stop="12183"/>
          <exon e_start="12122" e_stop="11852"/>
          <exon e_start="10590" e_stop="10465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATGGTAAGATACAAGATAACTCCTTCATCAATGTTTTGCTGAAAATAGCCTTTAAGAATACTACTTGATTTTGTGAGTTGGCCAGATCTTGAGTGATAAGTCATAGGTCATGTTATTGCAAACTCATGATATATTGGTAACAATTATGTCATTGTTGAAACAACTTTAATAGTCTCCCAAGTAATCATTTCCATGTCTCCTGCAACTATTTGTTATTGCCGAAGGCGAGCATCAAGCTGAGAGAGTAGATCAATTATGTGAAAAGCTTTATGCTTTGTTAAAGACTTATGGCTCTCTTAGTCTAAAATTTAGGTGTTTCTTATGTGCGGAGACTCCCTGCTGTGTGTTAGAGAACTGGTAACAGGTAAATAAATTTCTAACCCTTCGATTAAAGCTCTGGATGAGTTCATTCAGTGGTCTCAGGGTGCATTTCTACCTAAGAAGTTTGTTTCTACCACAATCAGTATCTTGTTATTGCATTTTCACTTGATCCTTAGAAATGCTTTGACCTTTTATCATTAAGATTTTCCTTGTGATAGTTTTACCTGAGAATTTGATCTTCACGATTCCTTCTTAGTTCTTAAATGCTGAGCTTCCTCAATATTATATTTGACTGATTATTTAAAAGGTCACTTTCCTTGTCTGAGAACTCCATTTTTCTTTTCGAATTTTTGACAAAAATTAAGTTACATGCAGATTATCTGAAACGGGATACGAAAAAAAGAGATTTGAACTTTTGTATATGTAATTGGGACCCCCAATCTTTTCGTATGCTGTTTTCAAGAACCCATTTCCAGTCCTAATGACTTTACTGCTAGAGTAGTTTTCCTCAATGTCTTAATTATACTCTTGAACCATGGAAACTATGACTCCTGGACACTGCAGAACCTGAATTCTTAATTCTTGATTTAAAAAAAAACATGGAAATACAGAGTCTGCATTCATCTGTCATAAGCATCTTGAAAATTCGAGTAATTTTGTTCTTATCAACTTGTTAGAAAAACTTCTTATGTCAAAGAAAACAATATAGGATCTTATGTTATCATTATTATTTCCCTTGTCGTGATTCAAGTAGGAGTGAATAGAAGTTCATTGCTTTATATAATTTTTTTATTTTTTTATAAAAAAGAACCATAGGAGTCCTTTCCCATTTTCTCCCCTTTCTAGAGTAGGTCATTGATGGGACACGAATGTTTGGTTCAGAGAGTGTATCAATTGCTAACAAGTTTTACATATCCTATGTGAATGAACTTTGTTTTCACAGGCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATG</genome_strand>
        <mrna_strand>AGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT................................................................................................................................................................................................................................................................................................................................GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAA............................................................GGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335110" ref_strand="+" ref_description="SGN-U335110        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, similar to SF16 protein (Helianthus annuus) GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif | chr2:18115428-18118904 FORWARD | Aliases: F18O19.21(evalue: 1e-17, score=87.4) genbank/nr: gi|30689461|ref|NP_850399.1| SF16 protein {Helianthus annuus} -related [Arabidopsis thaliana] gi|20466712|gb|AAM20673.1| putative SF16 protein [Arabidopsis thaliana] gi|30725490|gb|AAP37767.1| At2g43680 [Arabidopsis thaliana](evalue: 8e-16, score=87.4)">
      <seq>acctatgctagagctacttccctaaaggctctctctcctacggaagctaatccaaatgccaactctgttagtgctccttccaagaaggctactgctcccaaggaggcttctccaagggtctcttaccctagatctacttatccagagccgagtaggaaccataatgagattagctatgctaacaggccagaagcaactttgacgctccatctttcagcaaccaagatacaggcagcctacagaagttacatggcaaggaggggtttcaaatctttgagtggtttagcaagacttcaaggagtggtcagaagcagaagtgtaaagcggcagacagtacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12403" stop="10203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12103" g_stop="11852" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11851" i_stop="10591" i_length="1261">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10590" g_stop="10507" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="336" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U335110" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12103" e_stop="11852"/>
          <exon e_start="10590" e_stop="10507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATGGTAAGATACAAGATAACTCCTTCATCAATGTTTTGCTGAAAATAGCCTTTAAGAATACTACTTGATTTTGTGAGTTGGCCAGATCTTGAGTGATAAGTCATAGGTCATGTTATTGCAAACTCATGATATATTGGTAACAATTATGTCATTGTTGAAACAACTTTAATAGTCTCCCAAGTAATCATTTCCATGTCTCCTGCAACTATTTGTTATTGCCGAAGGCGAGCATCAAGCTGAGAGAGTAGATCAATTATGTGAAAAGCTTTATGCTTTGTTAAAGACTTATGGCTCTCTTAGTCTAAAATTTAGGTGTTTCTTATGTGCGGAGACTCCCTGCTGTGTGTTAGAGAACTGGTAACAGGTAAATAAATTTCTAACCCTTCGATTAAAGCTCTGGATGAGTTCATTCAGTGGTCTCAGGGTGCATTTCTACCTAAGAAGTTTGTTTCTACCACAATCAGTATCTTGTTATTGCATTTTCACTTGATCCTTAGAAATGCTTTGACCTTTTATCATTAAGATTTTCCTTGTGATAGTTTTACCTGAGAATTTGATCTTCACGATTCCTTCTTAGTTCTTAAATGCTGAGCTTCCTCAATATTATATTTGACTGATTATTTAAAAGGTCACTTTCCTTGTCTGAGAACTCCATTTTTCTTTTCGAATTTTTGACAAAAATTAAGTTACATGCAGATTATCTGAAACGGGATACGAAAAAAAGAGATTTGAACTTTTGTATATGTAATTGGGACCCCCAATCTTTTCGTATGCTGTTTTCAAGAACCCATTTCCAGTCCTAATGACTTTACTGCTAGAGTAGTTTTCCTCAATGTCTTAATTATACTCTTGAACCATGGAAACTATGACTCCTGGACACTGCAGAACCTGAATTCTTAATTCTTGATTTAAAAAAAAACATGGAAATACAGAGTCTGCATTCATCTGTCATAAGCATCTTGAAAATTCGAGTAATTTTGTTCTTATCAACTTGTTAGAAAAACTTCTTATGTCAAAGAAAACAATATAGGATCTTATGTTATCATTATTATTTCCCTTGTCGTGATTCAAGTAGGAGTGAATAGAAGTTCATTGCTTTATATAATTTTTTTATTTTTTTATAAAAAAGAACCATAGGAGTCCTTTCCCATTTTCTCCCCTTTCTAGAGTAGGTCATTGATGGGACACGAATGTTTGGTTCAGAGAGTGTATCAATTGCTAACAAGTTTTACATATCCTATGTGAATGAACTTTGTTTTCACAGGCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTA</genome_strand>
        <mrna_strand>ACCTATGCTAGAGCTACTTCCCTAAAGGCTCTCTCTCCTACGGAAGCTAATCCAAATGCCAACTCTGTTAGTGCTCCTTCCAAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTACCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343682" ref_strand="+" ref_description="SGN-U343682        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>taaattaatttactttctgtagactctgcaagtttggatggtgattttagggcataaaaatgtgttctttactcctttgtgaactaaaaatttgatttttatttttgtgtgtctttatatgtggtgtagaatttgggggtttgttttttgattttgattttataatttcttgatattatttgtctgttacattcttggtagttgtcaaggaaataaggacaaaacaacaaatttcatcatcagaatgtaattttagcatctatttgtaaaaaaaatatctatttttttctgccccttgtgtttctctcttctgatctcatcaccatcttgaagaaggttgaaaagcagcaaggaatttattttgtttttgaaaaaaaaggaagagtattatgaaatcatctggatgatgatgatgatgacatgaacttgtgtgttattgtctttagctagtttaaaaattggacctttctttagtttgattccttcttgttcttgaagtttgaattttaaagtcaactcaaagaatgaaatatctagaaaagaaattaaagggacctaaaaactaagttggacagtttcttcactttcgacgttgcacccatgccggattatccaaaaatacactatttttgaagaaacttttagagatttggacacattttttgaagaagtttgagcacatagactaaaaattcatttccctgtttgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14330" stop="13019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14030" g_stop="13319" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U343682" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14030" e_stop="13319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACA-TTTTTGAAG-AGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTT</genome_strand>
        <mrna_strand>TAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTTGAAGAAGTTTGAGC-ACATAGACTAAAAATTCATTTCCCTGTTTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331713" ref_strand="+" ref_description="SGN-U331713        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to unknown [Zea mays] (GB:AAV64233.1) | chr3:22055134-22057017 FORWARD | Aliases: None(evalue: 3e-33, score=138) genbank/nr: gi|40850581|gb|AAR96012.1| hypothetical protein [Musa acuminata] (evalue: 1e-31, score=139)">
      <seq>aaatttcttcctcttcttcttcttattcttcatttctctatatttctttgaatcacaaagttttgattttcttctttgttcatgcaagatccaaagaactcttcacaagcaaggaaggcttggtaccaaaaggcaatggaaatggcttctctatggaaaacatttgccaagccaagtgaaattcccacaacaaatccaacactatggagaagcatatctaagtcatcatcaagagagatatcaaacactaataatagatcacaaaagctaagaagatgcacttctttaagagttgcaacatctttcactagagtatgtctatgtgcaccaatatcttcctatagtgaagtgtttcaagtagaccatcatcatgtcgttccaccaaggaaaagtaattgtagaacaaagccaatgatgagtagtatttcacaagaaagaataccaagtggaaggatgagtttggaagggaggaagatatttaggggaaaatcattgaatgatgatgtgttaatgaagagatttgtgattgaagaagaagcaatgatgcaagtaagaagaaggaatcaaatggaagttattaggagaagaaactctttgaggagaagaaaaaaacttgggccaagtcctttaagtagaatggttttggctgangaagattaattcaactaatttatttaatagtatttacttacttttgattangttctatgtccattttaaatatagcccatttgagtatgtttaatttaaccttctttctaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23689" stop="20193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23389" g_stop="23277" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23276" i_stop="21145" i_length="2132">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21144" g_stop="20493" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="766" r_length="653" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U331713" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23389" e_stop="23277"/>
          <exon e_start="21144" e_stop="20493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCTTCCTCTTCTTCTTCTTATTCTTCATTTCTCTATATTTCTTTGAATCACAAAGTTTTGATTTTCTTCTTTGTTCATGCAAGATCCAAAGAACTCTTCACAAGCAAGGTAACTTTCTCTCCTCGTCTGAACTAACATCATAGTTTACTGTAATTTAATATGTTATAATATGTTGTCTGTCTTATTTTTATGATTATTTATGTTGTACGAAATTAACGGTTATAGTTAATAAAATGGAGAAGTTTGTTGTTAAATTAAACTGATCAAATTGATTGTTTAGTTATATTCAATTTTACTTTGTGGATTAAGCTTCATTGATTCAAAATTGAAGTTTTGCGCCATAAATATATCTGTCTTTTTAAAGAGAATATATGTTAATCCCTACTAGAGAAACATTCATGTATTAAATTTTAAATTTATGAAATGTGTTTTTGTTGTTTAGAGTATTTAATTATGATTAATTACATATATTTTCACTTTAATTTGTTAAAAGTAAAATTTACTTGATTGATCCATATACATTGTGTTTTTTTTCTCTCTTGATAATTTACTTATCTATGTTTTAATTAATAATCAAACTTTTCCAGCTCAATCAGACACTCCGTACAATTTCTAGTAAATTACTTCAAATTTTAATATATGGAAATTATAGTTTATCACTTCAACATTGAATTCATATGATTCTAGTCTTTAAGAAATGACCAATAGATCATTTTCGTGCACATTTAAATAAATCATTAATTAGGGATAGACAATACAAGTTCAATGGAACATTGTTCACTCAATTCCAATCACATATATCTCAATCTTTTCTTTTTACACCAATTGCTATTCTTAGTGGACAGAGTTGCTTGTTGCTTGCTGTTGGGAGATAATAGGTATTCCGTGAAATTGTTTATGTGTGTGAAAACTAAAAACTAATCCGGACACCACTATCATTAAAAAAAAAAAAAGTGTGGGTGGGGGTGGGGGGAGTTCTGACAAAACACATATTTGTACAACTTCTGTTAGTTCTTTCTACCTCAGCAAGTGACCCAATTTTGAGCAGTACACTTTAGGCCCATATCAAAAGCCTTAACACGATGGGATGGGTTTTCTTCCAAATAAAATAAAAATAAAAAAAGTTAATAAATTGGGGGGGAAATGGTGGAAAGAGATGACAATTTAAAAATCGAATCCTAATCAACAAGCTGAAAATTCAGATGGTCAACTAACTGAACTACTAAGATTTTGTATAATTAAATAAATTTCATGTTGTACAAGGTCAATGAATTCGATTTCTCGACCTTTAACATTTGGGTTATTTGTGAATTTTGATCTTTAATCTTTGTCCTTAAAAAAAAAAAAACTTTTTTTGTGAGGCATAAATTTATATTTTTGTACCACAATGTCTCAAAAGGTATGCTTAACTCACATGACGTTTGACATAAATTCGATTGCTAAGGACAAAATTAAAAGTTAATTCATTTAAGCGCGTAAAAAAACAGACTAAACCAAGGTTTGACCTATCCCAGGAAGACTTGTCCAAACATAAATTCTTAGACATTTTCAAAGTTTGGCTCAGTCTAGAGAATTTTAATTGACTTTGATTTAGTTTTCATCACTTTTTTGTTCTTTCTCATGACTTTCAAAGGTTATCCACCTTTTCATAAAGTCAACCTTGATATTTCAATGGTTTATTTAGTGAACAAATTGAAAAATTAAAGTTCCAGAAGAAGCTAAAAAGAGTATATTAGTTCAAGTTTCACATTTATATCCCATCTATGGTGTTCTTTTTTTTTTTTTTTTAATGTTTGTGTTTGTGATATTTCTTCATAATAATTGAAATTGACAAGCTTATTAAAAATTCAACTTATGTTGTGTTTCTTGTGTGATATTTTTAAATAATTGAAATTGACAAACCTTATTAAATATGAATTTTAACTTATACATGTGGACAAATTAAAAAAAAACAGTTGTAGGTTACTTGCAATACTTCTTAGGTTATCAGTCCATACTAACTATTGTCCCTTGCTAGATTTTTTTTATTACATATGATTAAATTTTTAATTAGTGTAATTGTATTTAAAATTGTATCATAGATTATATACATTGAACAATATAAATGATTTTGTTTAGTTGCAATATGGTCGATCTTTCAGATGATTATATCACACTAGACTTGTTGTGAAGATTTATCTATTATAAATATTTAACGATCGATAGTGCACAAAATTTAAAATGTTAGATGTGTTTTGTAGGAAGGCTTGGTACCAAAAGGCAATGGAAATGGCTTCTCTATGGAAAACATTTGCCAAGCCAAGTGAAATTCCCACAACAAATCCAACACTATGGAGAAGCATATCTAAGTCATCATCAAGAGAGATATCAAACACTAATAATAGATCACAAAAGCTAAGAAGATGCACTTCTTTAAGAGTTGCAACATCTTTCACTAGAGTATGTCTATGTGCACCAATATCTTCCTATAGTGAAGTGTTTCAAGTAGACCATCATCATGTCGTTCCACCAAGGAAAAGTAATTGTAGAACAAAGCCAATGATGAGTAGTATTTCACAAGAAAGAATACCAAGTGGAAGGATGAGTTTGGAAGGGAGGAAGATATTTAGGGGAAAATCATTGAATGATGATGTGTTAATGAAGAGATTTGTGATTGAAGAAGAAGCAATGATGCAAGTAAGAAGAAGGAATCAAATGGAAGTTATTAGGAGAAGAAACTCTTTGAGGAGAAGAAAAAAACTTGGGCCAAGTCCTTTAAGTAGAATGGTTTTGGCTGAGGAAGATTAATTCAACTAATTTATTTAATAGTATTTACTTACTTTTGATTAGTTTCTATGTCCATTTTAAATATAG-CCATTTGAGTATGTTTAATTTAACCTTCTTTCTAATTAA</genome_strand>
        <mrna_strand>AAATTTCTTCCTCTTCTTCTTCTTATTCTTCATTTCTCTATATTTCTTTGAATCACAAAGTTTTGATTTTCTTCTTTGTTCATGCAAGATCCAAAGAACTCTTCACAAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTTGGTACCAAAAGGCAATGGAAATGGCTTCTCTATGGAAAACATTTGCCAAGCCAAGTGAAATTCCCACAACAAATCCAACACTATGGAGAAGCATATCTAAGTCATCATCAAGAGAGATATCAAACACTAATAATAGATCACAAAAGCTAAGAAGATGCACTTCTTTAAGAGTTGCAACATCTTTCACTAGAGTATGTCTATGTGCACCAATATCTTCCTATAGTGAAGTGTTTCAAGTAGACCATCATCATGTCGTTCCACCAAGGAAAAGTAATTGTAGAACAAAGCCAATGATGAGTAGTATTTCACAAGAAAGAATACCAAGTGGAAGGATGAGTTTGGAAGGGAGGAAGATATTTAGGGGAAAATCATTGAATGATGATGTGTTAATGAAGAGATTTGTGATTGAAGAAGAAGCAATGATGCAAGTAAGAAGAAGGAATCAAATGGAAGTTATTAGGAGAAGAAACTCTTTGAGGAGAAGAAAAAAACTTGGGCCAAGTCCTTTAAGTAGAATGGTTTTGGCTGANGAAGATTAATTCAACTAATTTATTTAATAGTATTTACTTACTTTTGATTANGTTCTATGTCCATTTTAAATATAGCCCATTTGAGTATGTTTAATTTAACCTTCTTTCTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="+" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32538" stop="34543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32838" g_stop="33009" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33010" i_stop="33753" i_length="744">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33754" g_stop="34232" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="652" r_length="479" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32838" e_stop="33009"/>
          <exon e_start="33754" e_stop="34232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCAC-CAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAACTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAGAAGTGGTAGACTTTGTGATAGAGGTGGAGGGAGTGAAGCCAGATGACTTCACCATGGCATCGACATCAAATAGGTTTCGAAAGGGAGGTGAGTTTAATGGCTCTTACTCTAGAGGACAAGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCCATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGAGACATTAGGAGGAATTGTCCGAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCCTTATTCTGGAGGACGTGGTGGCCGAGGTAATGGTGGTCATCAAAACGGCCGGGGTGACGGACAAATGGGAACTACTGCAGCGCAACATGGTAGGGGCAACGGGCAAGCAGGTGATAGGTCCCATTGTTACGCTTTTCCTGGGCGGTCGGAAGCGGAGACATCAGATGCTGTTATCACATGTAATCTTTTGGTTTGTGATTGTATGGCTTCTGTATTATTTGACCCTGGCTCTACATTTTCATATGTATCCTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTGTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGATAACTTTTGTGGAGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTAAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCTTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCATATCATCTTCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGTTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCTAAGTACCTCCAATTGAGTCGGTCTCGATAGTTCGTGAGTTTTTAGATGTGTTTCCCGCAGACCTTCCGGGTATGCCACCGGATAGAGATATTTACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGTATCCCGTGGAGTTAAGAGAGTTAAAGGACCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34161" stop="33231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33861" g_stop="33531" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33861" e_stop="33531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAAGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTTAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCTCCACAAAAGTTATCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAGGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35151" stop="33841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34851" g_stop="34141" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34851" e_stop="34141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTTTGACAAATCAACGGTAGTAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCATTGTCTCAATCTTAGAAGGATCCACCATCACCCCGTCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCCAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTAATACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCTCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCTATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGATATTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCAC-AA-ATAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGTCCTTTAACTCTCTTAACTCCACGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGC-TCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321509" ref_strand="+" ref_description="SGN-U321509        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | selenoprotein family protein, contains Prosite PS00190: Cytochrome c family heme-binding site signature; similar to 15 kDa selenoprotein (GI:12314088) {Homo sapiens} | chr1:1717461-1718852 REVERSE | Aliases: F3F20.17, F3F20_17(evalue: 2e-63, score=239) genbank/nr: gi|21555290|gb|AAM63825.1| unknown [Arabidopsis thaliana](evalue: 2e-61, score=239)">
      <seq>ggcgattggcggccaatcggccgaattcccatggggatccgatcgatagagagagaaatgggtgtgatccaggtagcattgctgtgctttgttgttggagttttgggggcaaaagctgagcagttgagcacgaaagagtgtgaaaatctcgggtttacgggtttagctctatgctccgattgtaggactcttgctgagtatgtcaaagatcaagagttggtgtctgaatgtttgagctgttgcacagaagactctgatgatgccatgagtaaggttgtttattctggagcagttttggaagtctgcatgagaaaactagttttctatcccgaagtcgttgggttcattgaagaagagaaagaccaattcccttttgtaaaagttcaatatgcatttaattctccaccaaagttgatcatgttggatgatcacggagagcaaaaggaaaccattagaattgataactggaaacgtgagcacatattgcagttcttgaaagagaaggttaagccatcatccgatatctaatgtggctggtaatctagtcccgttttgatcaagagcagtgttaagtgttcagcctgcatctagtttcagaaaactccagttccccacttattgtttttaagaaactgtgagatgagattaattgctacacacaagttcaaaagctactttcatttacaaaacatgcaactggatccttgtgcttttgacgtatcgtttggtttcgtcagaaaaaaaaaaaaaagctctctctctctctctctttttctataactttctttaattactcattaccagattattgttaggaataccccagagaaaggaacacatcatattatgaaggataattacatgaggagttggaatatccagttagctgtgcaagcctgcttctctataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060E11-PcbQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0060E11.1" temp_strand="-" temp_description="C06SLm0060E11.1  AC232640.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0060E11 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63623" stop="56860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63320" g_stop="63154" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="214" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63153" i_stop="59415" i_length="3739">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59414" g_stop="59356" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="273" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59355" i_stop="58269" i_length="1087">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58268" g_stop="58087" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="455" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58086" i_stop="57607" i_length="480">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57606" g_stop="57160" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="912" r_length="457" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060E11.1" gen_strand="-" ref_id="SGN-U321509" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63320" e_stop="63154"/>
          <exon e_start="59414" e_stop="59356"/>
          <exon e_start="58268" e_stop="58087"/>
          <exon e_start="57606" e_stop="57160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAAATGGGTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAGGTTCTTTCTAAAACTCTCCATCTTTTGTTGTCTCTCTATATATGTAAATTAAATGCAGATAATTTCTGGGTTTTTGTTAAATTTAGTGTATGAGTAGTGGGGTAAAAGGTTTGTGGGATTGAGGGAATTTATTGACCTTGACATTGTTTTCAAGGAGACTGAAGATGAGTTTTGATCTTTTATAAGTTTTGGATATGAGATGGCCTCAGGTGTAGTTTTTATAAGGTTAGAGCAAATGGGTTCAGAAGGGGATGATTAAAAGAGCTATATCCAGGGCTGATTAGCTTCCTGAATGAGTTGGAGAAAAAACCTTGAAGACTGCAGTTTAATTGAAAGAGAACAGGGAACTGGAGGAATTGGATATAAGGGCTTAGATTAAAAAAATCAAGTGATATTGTTTATCTTATATGTGGAGAACCTTGTAATGGAAGAAATTCGGTAAAGAACCATAAACAAGATCAGAATTCTTTTTTTTAAGAGTTACAGAATCCTACACTAGGTAATAGCATAAGTGGGAGATCTCTCTCCCTCTTCGTGCATGCCAAACAACTTTTACATACTAATCTCTTAGAAAATATGACAATATTGACAATGAACCTAAGGAGAACATAAGCAACTTATCAAATAAACCTGTGCCATGGTGAGCCACTGCTTTGAAAGCAATTTCGGCTTAACTAGGGTGGTAATCGTGTGAGACTGGTCACTGGTCACTCCTAAAGTCATGGCTAGAAGTTTGGAGTTTGCAGAAATACAATTGAGAGTAACAAGATTGAGAAGAACAACTTTGAGGGAATGAGAGGGTTCTTTCGTAATTGATAATTCACAAGATTGGTTTAGCTTTGGAAAGACTATAACCCTTTTCTTCTTTTTTTGTAAATATGGTTTTTGAATACTACCTATGTACTGACCGAAATAAAAATGTTACTAGTGTCAAAAAAAAAAAAGGGCTACTTCTATAGGCTAAGTTGTTGAGTTATTATAGAAACAAAAAATTATTCAAAGAGTTGGGTTACAAAATTTGTTTTGGTGCAATTACATAGTGCAAGAAAATGATAAGAAAAAAAAGTCAGGCTAAAAGGGTGAGCCATTCCACAACGCGCACGCATCAAGACCATGAGTCGAGCTAGGCGACATATTTTGTAATTACCTATTTAAGGTGATGTCCTTGGTAAGTTGAAATTGTGTCATGTTGTGTACTTTTCCCTAATCACGTCTCATCAATACTTCTTTGGTCTACTCTACATCTCATGAAACCACGCATGGCCAACCTCTCGCCATCCGTGCATCTCGCCACATGCCCGAATCATCTCAGTCTTGCTTTCCTCCTCTTGTCCTCCACCAAAGTCACTCCCACCTAGTACCGGATATCCTCATTTGTAATCTTACCTCATTATGCCCACACATCTATCACATCATCCTCATATCTGACACTATCTTTCTGAATGTGAGAGTTCTTGACTAGAACACTTTGCTGTATACTACAAAGCTGGTTTAACTACCACATTGTAGAATTTGTCTTTTAAGTGTTTGTGCACTTTCTTATTACACATGACTCCAAATGTGAGCCTCCATTTCAGCAACCCTGCACCAATATGGTGAGTGACGTCATCGTCAATCTCCCAGTTACCTTGGATAATAGATCCAAGATACTTGAAACTTCCTCTCTTTTGCTTGACCATTGTATCGTGAGCCCTTTAGAAAGACTACCCAAGTCTTCCGTAAAAGGCAACCAAACCTTTATGATCATGTAGGTGATTCCATCGAGTCTATCTCAACACATGCATTAAGTGCAAAATGAGCTCAATCTTACAAAGTACCAAGAGACTTCAGAGGGATAGGAAATGTAGTGCATATCGAAGGCTCGTATAACTTCATTTGATCACAGATTGTTACCTTTGCCTTAGTGGGGAAATGTTGGTTTTATTCAAAATTTGTTGGTAATGCGAAGCCATAGAATTGTTTGTCGCTCCCTTTTGCACTGCTCTGTCTTGTGTAGTAGACAAAAGTTCCGTTTAGAAAGATTAAATTTATTGTGAGCACTTTATACACAAACTTTTCTTATGGGATTAGTTGAGTTCCCTCCATGCTTGTTGAGGCGAAACTTGACAACCACACACGTATCGCTGCCCTCTCCATTCGTCCGACTCAGCTCGTGAGGCGTGCGCGATGCAACTGCTGCAAAATGAATTTTGTAACTGCTACTTGAATAAGTCCGATAACAACAGAGTTTATTTTCTATAACAGCTACAAATTAATTCGTGTAAAGTTGTAGTTGTTTCTTTCATAACAACTCTAGCAGATGGCCTAGAAAAGCGGATCTGTATGAATTATCAAATACAGAAAAAAGTCATTCTCATTTCCTCAAAGTCGTTGGGCAATCGTATTTATGCGAACTCCAAACTTTCAACCACGAGTGCTCGTTTTGGGATTGCGCCTGTAACTTGGGGATCAACCAGTCTCAAACAATTTACATCATGGTTTAGGCCGAAATCACTTTCATGGGAGTGGCTCTCTATGACACAATGTTTTATTCAATAAGTTGCCTCTGTTACTGTCAATAGTTTCCAAATCATGCTTACTCGGCTTTTCTGCTGGGCACCAGTAATGGTATTTGATATTTGCTGTAACTCATCCAAGAAGAGATTTTTCCTACATACATGGATAATTAAGATTTGTTGTTTTTGCTCTAGGCAACCAAATGTTTGATACTTGCTTTTAATCACAGCTGTGTTTGGATTTGTTTAACTAGTTCTAGTCTGGGAAAGAAACAATAATGGACCAATATCAGGAGTCAATCTAAAGCCCGAATTAATGATGTACTGCTACATAAAAACTATCATTATGGGGCAAACAAACCTGCAATGATTTATCTATGCTATAAATATCAAATAGCTTAAGGATCACTACACCATGTACCCAGTTGGTGGGATTTCGATAAGTTTGAAAATTTCAAGGAAAAGATCATACAAGTACTAAATTGACATTGAAAAGCTTTGTGGAACATTGGTAAAAACGATCTGGAAGGTAGTGGAAATACCAGCTTACTCGCTTATCTTTAGTGTTGCAAATTCACAAATATTTTGCTTCAATTATGCAACCCTCTGTAAGTGCATGAATAACTTTTTCATTTTTTTCTTTAATGTATGCATTTCACATTTGCTACCTCTGTATCTTTGCCCTCATCCTTGCACTGCAAAAAAGTTTTCTTAATTTCTATGCAAATACTGGGACCTCTAAAAAAATTGGGATGTATTGTTTGCTGAACTTAAGTCTTAATGTGAAAGGATTATATGGATATCTAAAAGCCGTGTATCGTGCTGTCTGATTGTGATTAGAAATGTTTGAACTTATTTAACCTTTCACCATGTCCTGTAAATTGAATACTGAATTTGACTAATCATTATGATTTATTGAGAAAAAGGACTATGCATAGTTAGAGAGAGCAATTTCATCAAATGAAAAGAGGAAAAAAACTAGAACCATGGCGCTAATTTAGAAAACTTGACCAAATAAAGTATATTAATAGAAGTCATGCTCCATATTTGGATGCAGGAGCTATTGCTGTTTTATTGGTTCTTTCCTCTTTTTTTTGTGGATTGTTAGGAGTTTATAATGACCTAATGGACTGCTCTTCTCTCCATGTCCTTGTGTAATTATTTTTTCCTAATTTGATTTCAAATGCATGTTGACAAGTATAATTATTTCTTGCTAAACAGTATTGATTACCTGTTTCCTACAGAGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAGGTACAGATGCGACTGAGATATTTCATCTGCTAGAGGTTATTTTTAGCAGTTATATTTCAGGTCGTATATAGAGTTTTGAAGAGTCTCCTCTGAGTTTCTGGTCTCTAGTGTTGCCCAATATTTTTGAAAATCATGGCTTCCATGTAAACATTGTAGAGGTAAGAGATTCATATTAAGATGGTTTTGATAAGGATGTTTGCACCCAAATAATAGTTCAAAAAAATTGAGGCAAAACTTAAACAGAAGATGAAAACACTTATCTGCCTTCCCCTTGTTCCTCATCTATTTTTTTTCTTTTGGTTTGCTTGTTTATGTCAGGGAAGTTGAAAATTTAAACTTTTTGGGTTTCGATACCTGCCTCAAAGTCCCCTAGGCCCTAGTATATGGGAAATGAATAAAGCGGTAAAATATGAGAAGTGGACCACTCGAGTCTTCTTTTTGTAAGCACCTTGACCAAAAAGGTAGGGGGGGGGGGGTGGAGGGAGAAAATAAGATGCCAAAATATCACTTTGGAGAAGGGTGTCTTTTCTTTTTTTTTTTTTTCCTTTTTTGAATAATCGAGAATCCGCTCGGGCCAATGGAGCATAATTTGGAACTCGCTGGATAATAGCTTACTCTACCTTTCTCCACTTAAATACCATGTTTTTGTCTGTAGCAGCGTACGAACCATGACATTTGTCTAACCCACACATTACGTGTAGCGTTCTTACCCCTAGATCAAACTAATGGGGGCATTTTTCATTTCTTTTTTTTAATCCATCCTTTTCTCATACTTGGTGGATGGTGGAATTCTTAAAGATTCTACTGTTGCACCAAGTACATGACATGCTATCTCATAACAGTCAACTAATGGCTAGAGTAAATCATGAACTTCCTGAAAGGCCAGACTAATGGCTAGAGTAAATCATGAACTTCCTGAAATGCCAGACTAACATATGAGCTGTCACATTTTCTCTCAAAAAAATAAATAACATATGAGCTGTTACATCTATGGCAAAGGTGGTACTTCTTTACTGATTGATCAACATGATGGCTTTACTTTGAAATGGTACTTCTTAATTTTAATCTACTCTAATTGTGAATGCAGGTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAGGTCATCTTCCTTCATCTCTGTTTCCCTTCTTTCCTTAGTGTTTTGAGTCTGAGCACTACAGATTTGTGTTTCTATAATACCTCTACATTGCATTGAGCATGTTCTGTATTAGTCATCAGGACCGTTATGGCCAGATATATTTTCTAAATCCTCCTCTTTCATGTCTTCCTATTCCATTTTCGGGAAACATGATTATATTCAGCCATACAGGTAGACAGTCATCTAGTTGTCACCAAAAATTAACTTTTGGGTCATGAGTCATGAGTGTGTGGCACATGCTAAAAGATTTCAGAGAACTTAGTGTCCTCGGGAAGCCTGAGTACATGGAGTTGCAATTCACAGCTTTAAGTAAATTTTTCCTGATGAAAATTAGTTTGCACCCTGTGCATTGCATCAAGTAGAATCATTCCTTTTGTACGCATGTTTGATAACAGCCAAATCTTTATTCTGGTTATCTAATGTATTCGATACATTTTACAGAATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCAG----------TCCTGCTCTCTCTCTCTCTCTCTTTTTCTATAACTTTCTTTAATTACTCATTACCAGATTATTGTTAGGAATACCCCAGAGAAGGGAACACATCATATTATGAAGGATAATTACATGAGGAGTTGGAATATCCAGTTAGCTGTGCAAGCCTGCTTCTCTATAATA</genome_strand>
        <mrna_strand>AGAGAGAGAAATGGGTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCAGAAAAAAAAAAAAAAGCTCTCTCTCTCTCTCTCTTTTTCTATAACTTTCTTTAATTACTCATTACCAGATTATTGTTAGGAATACCCCAGAGAAAGGAACACATCATATTATGAAGGATAATTACATGAGGAGTTGGAATATCCAGTTAGCTGTGCAAGCCTGCTTCTCTATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4317" PGL_stop="1748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4317" e_stop="4218"/>
            <exon e_start="2488" e_stop="1748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4317" e_stop="4218" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4217" i_stop="2489" i_length="1729"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2488" e_stop="1748" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4317" stop="4218"/>
              <exon start="2488" stop="1748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTGATTCCTCCATTTTCTTCTGCAAAATCGAAGTTTGCCCTATTATTTTTCTTCTTTTTCCCACTGTTCGCAGTTTGCTAGGTCAAAGAATTATTCGG : CGCTATGGCTGCTAGAGCTGAAGAACCAATCAATGAGCAAGCAGTTGCCAATGTCTACAGTTCCATGAGGTCTGAGATCACCCAGATTTACTCTAAAATTACTGAACTAGAAATGGAAGTTAGTGAGCACTCACTCGTAATCAATGCTATACAACCACTTGATCCTGCAAGGCGGTGTTATAGGATGATTGGAGGTGTTCTTGTTGAGAGAACCATCAAGGAGGTCCTTCCTGCTGTTCAACGCAATAAGGAGGGAATTGAGGAAGTGATAGCGCGACTGAATGAAGCGTTGGAGAAAAAGAAAAAGGAGATTTCAGACTTTGAGGCCAAGTATAAAATTAGAATCAGAAAACCTGATGAAGTAAAGGAGGAGGGTGCTCGAAAGGAAGGCTCTGCACAAGGAGTCCTTGTTGGTCCTGCTGGTTCAAATGAATAGACCTGTCTAGTTTTCAACTTCCATTTTGAGGTACTTTGTTGAACATGGTCAAGGAACTAAAGTACTTTATCATCATCTTTAGTGTGTGATCTATCATGTTCATTTATTTTTCGTGCCTTGGCGGTATTTTAACCCAGGCGATGATCGTGACATTTTGGAAAACCTTAATTTTATCTCCTCGAACATTAGTCAAGTGTTCCTTACCTGCTGAGACTTGTGGCTTTTTGTGCTTTGGCTATGGATTGTAATTTTTTTAGGTTGTTGGAGTACAATTTTAGACGTCTGAATCTAATTATTTTCTCATA</gDNA_template>
            <first_frame> C  *  F  L  H  F  L  L  Q  N  R  S  L  P  Y  Y  F  S  S  F  S  H  C  S  Q  F  A  R  S  K  N  Y  S   : A  L  W  L  L  E  L  K  N  Q  S  M  S  K  Q  L  P  M  S  T  V  P  *  G  L  R  S  P  R  F  T  L  K  L  L  N  *  K  W  K  L  V  S  T  H  S  *  S  M  L  Y  N  H  L  I  L  Q  G  G  V  I  G  *  L  E  V  F  L  L  R  E  P  S  R  R  S  F  L  L  F  N  A  I  R  R  E  L  R  K  *  *  R  D  *  M  K  R  W  R  K  R  K  R  R  F  Q  T  L  R  P  S  I  K  L  E  S  E  N  L  M  K  *  R  R  R  V  L  E  R  K  A  L  H  K  E  S  L  L  V  L  L  V  Q  M  N  R  P  V  *  F  S  T  S  I  L  R  Y  F  V  E  H  G  Q  G  T  K  V  L  Y  H  H  L  *  C  V  I  Y  H  V  H  L  F  F  V  P  W  R  Y  F  N  P  G  D  D  R  D  I  L  E  N  L  N  F  I  S  S  N  I  S  Q  V  F  L  T  C  *  D  L  W  L  F  V  L  W  L  W  I  V  I  F  L  G  C  W  S  T  I  L  D  V  *  I  *  L  F  S  H  </first_frame>
            <second_frame>  A  D  S  S  I  F  F  C  K  I  E  V  C  P  I  I  F  L  L  F  P  T  V  R  S  L  L  G  Q  R  I  I  R  :  R  Y  G  C  *  S  *  R  T  N  Q  *  A  S  S  C  Q  C  L  Q  F  H  E  V  *  D  H  P  D  L  L  *  N  Y  *  T  R  N  G  S  *  *  A  L  T  R  N  Q  C  Y  T  T  T  *  S  C  K  A  V  L  *  D  D  W  R  C  S  C  *  E  N  H  Q  G  G  P  S  C  C  S  T  Q  *  G  G  N  *  G  S  D  S  A  T  E  *  S  V  G  E  K  E  K  G  D  F  R  L  *  G  Q  V  *  N  *  N  Q  K  T  *  *  S  K  G  G  G  C  S  K  G  R  L  C  T  R  S  P  C  W  S  C  W  F  K  *  I  D  L  S  S  F  Q  L  P  F  *  G  T  L  L  N  M  V  K  E  L  K  Y  F  I  I  I  F  S  V  *  S  I  M  F  I  Y  F  S  C  L  G  G  I  L  T  Q  A  M  I  V  T  F  W  K  T  L  I  L  S  P  R  T  L  V  K  C  S  L  P  A  E  T  C  G  F  L  C  F  G  Y  G  L  *  F  F  *  V  V  G  V  Q  F  *  T  S  E  S  N  Y  F  L  I </second_frame>
            <third_frame>   L  I  P  P  F  S  S  A  K  S  K  F  A  L  L  F  F  F  F  F  P  L  F  A  V  C  *  V  K  E  L  F  G :   A  M  A  A  R  A  E  E  P  I  N  E  Q  A  V  A  N  V  Y  S  S  M  R  S  E  I  T  Q  I  Y  S  K  I  T  E  L  E  M  E  V  S  E  H  S  L  V  I  N  A  I  Q  P  L  D  P  A  R  R  C  Y  R  M  I  G  G  V  L  V  E  R  T  I  K  E  V  L  P  A  V  Q  R  N  K  E  G  I  E  E  V  I  A  R  L  N  E  A  L  E  K  K  K  K  E  I  S  D  F  E  A  K  Y  K  I  R  I  R  K  P  D  E  V  K  E  E  G  A  R  K  E  G  S  A  Q  G  V  L  V  G  P  A  G  S  N  E  *  T  C  L  V  F  N  F  H  F  E  V  L  C  *  T  W  S  R  N  *  S  T  L  S  S  S  L  V  C  D  L  S  C  S  F  I  F  R  A  L  A  V  F  *  P  R  R  *  S  *  H  F  G  K  P  *  F  Y  L  L  E  H  *  S  S  V  P  Y  L  L  R  L  V  A  F  C  A  L  A  M  D  C  N  F  F  R  L  L  E  Y  N  F  R  R  L  N  L  I  I  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4234" stop="4218"/>
                    <exon start="2488" stop="2053"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKELFGAMAARAEEPINEQAVANVYSSMRSEITQIYSKITELEMEVSEHSLVINAIQPLDPARRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVIARLNEALEKKKKEISDFEAKYKIRIRKPDEVKEEGARKEGSAQGVLVGPAGSNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14328" PGL_stop="6319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14328" e_stop="14054"/>
            <exon e_start="12908" e_stop="12811"/>
            <exon e_start="12490" e_stop="11852"/>
            <exon e_start="10590" e_stop="10363"/>
            <exon e_start="10006" e_stop="9875"/>
            <exon e_start="7286" e_stop="6452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.927" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.734" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14328" e_stop="14054" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.927" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14053" i_stop="12909" i_length="1145"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12908" e_stop="12811" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.734" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12810" i_stop="12491" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12490" e_stop="11852" e_length="639"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11851" i_stop="10591" i_length="1261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10590" e_stop="10363" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10362" i_stop="10007" i_length="356"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10006" e_stop="9875" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.957">
            <gDNA_intron_boundary i_start="9874" i_stop="7287" i_length="2588"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7286" e_stop="6452" e_length="835"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14328" stop="14054"/>
              <exon start="12908" stop="12811"/>
              <exon start="12490" stop="11852"/>
              <exon start="10590" stop="10363"/>
              <exon start="10006" stop="9875"/>
              <exon start="7286" stop="6452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12103" stop="11852"/>
              <exon start="10590" stop="10507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAGGTTAATAAACTGTGGAAGCAACAAAGAAGCAGATTCTTTGTATATATAATTGGGTAATTAGACTAAAAAAAAAGAGTCTAAAAGGAGCACCAAGTTTATGGTAGTATTAGTATAACTAAGTGGAGGAAGAAAAGGGAGAGAGATTCTAGAGAGAGAAGGGTAGCTCAAGTTTTGCTTTTGGGTTTCTTGTTGGACTTGGCTTTTTGGCTTTGGTTTCAGCTTTTTCTCTGAAAGGGGGTTTTAATGGAGGACTTTAAACATAACTTGAG : GGTGACACAGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT : GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATG : GCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATGCAAATTCAGTCAAGGAGAAGTCAGATGTTCCAGGCACTCCATAGTCAAGCTTACATGAATGATAAAGAAGTTGAGAGCACTCTAAGCAAATGGACTCAGCTG : ACTGAAGCAGGTAACCATGATGATTGGAATAATAGTATGCTAACTAAAGATGAGGTAGAAGCAAGGCGACGGGAAAAAGTGGAGGCAGTCATCAAGAGGGAGAGAGCAATGAGCTATGCATATTCTCACCAG : TTGTGGAGACGCAACCCCAAATCAGCTACGGACATCCGAACCAGTGGAATTCCTTGGTGGTGGAACTGGTTGCACCACCAGCTACTTCCAGGAAATGATTCCGAGAGCCAATCTGCTGTAAAAGATGTCCATTCAACACCATCAAGGGCAATATCCGAACACAAGCCAAGTCCATGGCGTCTAAGTCAAAACTTCAGACACCTCCATTTGGATTATGACAGTCATGAATCAGTTACACCAAGGTCAACTAAGTCTGCAGTTCCATTAAGGGGAAAACTAATGCATACTCCCAGAAGAACATCATCACCAATGAGCAGCTCAAGCGTATCAAAGTATTCAAGACGCCGTGCTAGTGCTGCTGATTCCCCTTTCAATCATTCCATGAAGGATGACGACAGCCTCACGAGCTGTCCTCCTTTTTCAGGTCCTAGTTACATGTCACCAACCATCTCAGCCAAAGCTAAATTCAGAGGAAAAACCATTCTTGAGGAGAGAAATATAGGTACTCCATCAAACAGCTCGAGGAGGAGGCTGTCGTTTCCTTTGACTCCAAGTAGTACTGGATCCGTCAAGTGGAACAAAGGATCTGGAAAGGATGCCGCTTCTTTAAAGGAACATGAATCTATGGGAGATCATATGAGTGTGCATTCTACTGGTTCGACGCCTACTATAGTTGGGAGGAAACCATTTCAAAGATTTGTGTAATTTTGTTCCCTGTATGTTGTCCCATCTGTATTTAGCTCTGAAGTTACCTATGTATGTGTATTTATTGGTGTATTTTGTTAACAGAACACTAATGTAAAATAATTAAGTGTGAACATTCTCTTGTTTGTTA</gDNA_template>
            <first_frame> E  E  V  N  K  L  W  K  Q  Q  R  S  R  F  F  V  Y  I  I  G  *  L  D  *  K  K  R  V  *  K  E  H  Q  V  Y  G  S  I  S  I  T  K  W  R  K  K  R  E  R  D  S  R  E  R  R  V  A  Q  V  L  L  L  G  F  L  L  D  L  A  F  W  L  W  F  Q  L  F  L  *  K  G  V  L  M  E  D  F  K  H  N  L  R :   V  T  Q  *  C  *  K  H  G  G  K  R  Q  L  V  L  C  P  Q  K  G  F  Y  V  *  L  Q  E  E  V  C  L   : W  I  R  E  E  N  C  K  G  K  E  E  G  S  *  N  T  E  A  W  R  V  Q  I  I  P  L  Q  R  T  K  Q  Y  *  E  N  T  G  *  G  *  *  S  E  P  T  C  *  A  S  Y  F  *  T  I  W  H  S  I  C  I  P  C  G  T  N  F  S  K  N  Q  F  T  *  R  C  V  S  S  E  F  L  *  G  Y  I  S  W  C  H  F  S  E  G  R  L  S  K  G  C  L  S  *  G  S  F  S  K  G  Y  L  S  Q  G  S  F  S  E  G  Y  I  S  Q  G  S  L  S  K  G  Y  L  C  *  C  S  F  P  K  G  S  L  S  *  G  S  F  S  K  G  E  L  C  *  C  S  F  P  E  G  Y  C  S  Q  G  G  F  S  K  G  L  F  P  *  I  Y  L  S  R  A  E  *  E  P  *  *  D  *  L  C  *  Q  A  R  S  N  F  D  A  P  S  F  S  N  Q  D  T  G  S  L  Q  K  L  H   : G  K  E  G  F  Q  I  F  E  W  F  S  K  T  S  R  S  G  Q  K  Q  K  C  K  A  A  D  S  K  C  H  E  T  N  A  T  S  R  *  G  S  N  A  N  S  V  K  E  K  S  D  V  P  G  T  P  *  S  S  L  H  E  *  *  R  S  *  E  H  S  K  Q  M  D  S  A   : D  *  S  R  *  P  *  *  L  E  *  *  Y  A  N  *  R  *  G  R  S  K  A  T  G  K  S  G  G  S  H  Q  E  G  E  S  N  E  L  C  I  F  S  P   : V  V  E  T  Q  P  Q  I  S  Y  G  H  P  N  Q  W  N  S  L  V  V  E  L  V  A  P  P  A  T  S  R  K  *  F  R  E  P  I  C  C  K  R  C  P  F  N  T  I  K  G  N  I  R  T  Q  A  K  S  M  A  S  K  S  K  L  Q  T  P  P  F  G  L  *  Q  S  *  I  S  Y  T  K  V  N  *  V  C  S  S  I  K  G  K  T  N  A  Y  S  Q  K  N  I  I  T  N  E  Q  L  K  R  I  K  V  F  K  T  P  C  *  C  C  *  F  P  F  Q  S  F  H  E  G  *  R  Q  P  H  E  L  S  S  F  F  R  S  *  L  H  V  T  N  H  L  S  Q  S  *  I  Q  R  K  N  H  S  *  G  E  K  Y  R  Y  S  I  K  Q  L  E  E  E  A  V  V  S  F  D  S  K  *  Y  W  I  R  Q  V  E  Q  R  I  W  K  G  C  R  F  F  K  G  T  *  I  Y  G  R  S  Y  E  C  A  F  Y  W  F  D  A  Y  Y  S  W  E  E  T  I  S  K  I  C  V  I  L  F  P  V  C  C  P  I  C  I  *  L  *  S  Y  L  C  M  C  I  Y  W  C  I  L  L  T  E  H  *  C  K  I  I  K  C  E  H  S  L  V  C   </first_frame>
            <second_frame>  K  R  L  I  N  C  G  S  N  K  E  A  D  S  L  Y  I  *  L  G  N  *  T  K  K  K  E  S  K  R  S  T  K  F  M  V  V  L  V  *  L  S  G  G  R  K  G  R  E  I  L  E  R  E  G  *  L  K  F  C  F  W  V  S  C  W  T  W  L  F  G  F  G  F  S  F  F  S  E  R  G  F  *  W  R  T  L  N  I  T  *   : G  *  H  S  N  A  R  N  M  G  E  K  G  S  W  F  Y  A  L  K  R  V  F  T  C  N  S  K  K  K  S  A  Y  :  G  S  G  K  K  T  A  K  E  K  K  K  G  R  R  I  L  R  H  G  E  F  K  S  F  L  F  R  E  P  S  S  I  E  K  I  L  G  E  V  D  D  Q  N  L  L  V  R  P  P  T  S  E  Q  S  G  I  P  S  A  F  P  V  A  P  T  S  P  R  I  N  S  P  R  D  A  S  P  Q  S  S  Y  R  A  T  S  P  G  V  T  S  P  R  V  A  S  P  R  V  V  S  P  K  A  A  S  P  K  V  T  S  P  K  E  A  S  P  K  V  T  S  P  R  E  A  Y  P  K  A  T  S  A  S  A  P  S  L  K  A  L  S  P  R  E  A  S  P  K  A  N  S  A  S  A  P  S  Q  K  A  T  A  P  K  E  A  S  P  R  V  S  S  P  R  S  T  Y  P  E  P  S  R  N  H  N  E  I  S  Y  A  N  R  P  E  A  T  L  T  L  H  L  S  A  T  K  I  Q  A  A  Y  R  S  Y  M  :  A  R  R  G  F  K  S  L  S  G  L  A  R  L  Q  G  V  V  R  S  R  S  V  K  R  Q  T  V  N  A  M  K  Q  M  Q  L  L  G  R  V  Q  M  Q  I  Q  S  R  R  S  Q  M  F  Q  A  L  H  S  Q  A  Y  M  N  D  K  E  V  E  S  T  L  S  K  W  T  Q  L  :  T  E  A  G  N  H  D  D  W  N  N  S  M  L  T  K  D  E  V  E  A  R  R  R  E  K  V  E  A  V  I  K  R  E  R  A  M  S  Y  A  Y  S  H  Q  :  L  W  R  R  N  P  K  S  A  T  D  I  R  T  S  G  I  P  W  W  W  N  W  L  H  H  Q  L  L  P  G  N  D  S  E  S  Q  S  A  V  K  D  V  H  S  T  P  S  R  A  I  S  E  H  K  P  S  P  W  R  L  S  Q  N  F  R  H  L  H  L  D  Y  D  S  H  E  S  V  T  P  R  S  T  K  S  A  V  P  L  R  G  K  L  M  H  T  P  R  R  T  S  S  P  M  S  S  S  S  V  S  K  Y  S  R  R  R  A  S  A  A  D  S  P  F  N  H  S  M  K  D  D  D  S  L  T  S  C  P  P  F  S  G  P  S  Y  M  S  P  T  I  S  A  K  A  K  F  R  G  K  T  I  L  E  E  R  N  I  G  T  P  S  N  S  S  R  R  R  L  S  F  P  L  T  P  S  S  T  G  S  V  K  W  N  K  G  S  G  K  D  A  A  S  L  K  E  H  E  S  M  G  D  H  M  S  V  H  S  T  G  S  T  P  T  I  V  G  R  K  P  F  Q  R  F  V  *  F  C  S  L  Y  V  V  P  S  V  F  S  S  E  V  T  Y  V  C  V  F  I  G  V  F  C  *  Q  N  T  N  V  K  *  L  S  V  N  I  L  L  F  V  </second_frame>
            <third_frame>   R  G  *  *  T  V  E  A  T  K  K  Q  I  L  C  I  Y  N  W  V  I  R  L  K  K  K  S  L  K  G  A  P  S  L  W  *  Y  *  Y  N  *  V  E  E  E  K  G  E  R  F  *  R  E  K  G  S  S  S  F  A  F  G  F  L  V  G  L  G  F  L  A  L  V  S  A  F  S  L  K  G  G  F  N  G  G  L  *  T  *  L  E  :  G  D  T  V  M  L  E  T  W  G  K  K  A  V  G  F  M  P  S  K  G  F  L  R  V  T  P  R  R  S  L  P  M :   D  Q  G  R  K  L  Q  R  K  R  R  R  V  V  E  Y  *  G  M  E  S  S  N  H  S  S  S  E  N  Q  A  V  L  R  K  Y  W  V  R  L  M  I  R  T  Y  L  L  G  L  L  L  L  N  N  L  A  F  H  L  H  S  L  W  H  Q  L  L  Q  E  S  I  H  L  E  M  R  L  L  R  V  L  I  G  L  H  L  L  V  S  L  L  R  G  S  P  L  Q  G  L  S  L  L  R  Q  L  L  Q  R  L  P  L  P  R  K  L  L  R  R  L  H  L  P  G  K  L  I  Q  R  L  P  L  L  V  L  L  P  *  R  L  S  L  L  G  K  L  L  Q  R  R  T  L  L  V  L  L  P  R  R  L  L  L  P  R  R  L  L  Q  G  S  L  P  L  D  L  L  I  Q  S  R  V  G  T  I  M  R  L  A  M  L  T  G  Q  K  Q  L  *  R  S  I  F  Q  Q  P  R  Y  R  Q  P  T  E  V  T  W :   Q  G  G  V  S  N  L  *  V  V  *  Q  D  F  K  E  W  S  E  A  E  V  *  S  G  R  Q  *  M  P  *  N  K  C  N  F  *  V  G  F  K  C  K  F  S  Q  G  E  V  R  C  S  R  H  S  I  V  K  L  T  *  M  I  K  K  L  R  A  L  *  A  N  G  L  S  * :   L  K  Q  V  T  M  M  I  G  I  I  V  C  *  L  K  M  R  *  K  Q  G  D  G  K  K  W  R  Q  S  S  R  G  R  E  Q  *  A  M  H  I  L  T  S :   C  G  D  A  T  P  N  Q  L  R  T  S  E  P  V  E  F  L  G  G  G  T  G  C  T  T  S  Y  F  Q  E  M  I  P  R  A  N  L  L  *  K  M  S  I  Q  H  H  Q  G  Q  Y  P  N  T  S  Q  V  H  G  V  *  V  K  T  S  D  T  S  I  W  I  M  T  V  M  N  Q  L  H  Q  G  Q  L  S  L  Q  F  H  *  G  E  N  *  C  I  L  P  E  E  H  H  H  Q  *  A  A  Q  A  Y  Q  S  I  Q  D  A  V  L  V  L  L  I  P  L  S  I  I  P  *  R  M  T  T  A  S  R  A  V  L  L  F  Q  V  L  V  T  C  H  Q  P  S  Q  P  K  L  N  S  E  E  K  P  F  L  R  R  E  I  *  V  L  H  Q  T  A  R  G  G  G  C  R  F  L  *  L  Q  V  V  L  D  P  S  S  G  T  K  D  L  E  R  M  P  L  L  *  R  N  M  N  L  W  E  I  I  *  V  C  I  L  L  V  R  R  L  L  *  L  G  G  N  H  F  K  D  L  C  N  F  V  P  C  M  L  S  H  L  Y  L  A  L  K  L  P  M  Y  V  Y  L  L  V  Y  F  V  N  R  T  L  M  *  N  N  *  V  *  T  F  S  C  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12903" stop="12811"/>
                    <exon start="12490" stop="11852"/>
                    <exon start="10590" stop="10363"/>
                    <exon start="10006" stop="9875"/>
                    <exon start="7286" stop="6582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1794</number_coding_nucleotides>
                  <number_encoded_amino_acids>598</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSNARNMGEKGSWFYALKRVFTCNSKKKSAYGSGKKTAKEKKKGRRILRHGEFKSFLFREPSSIEKILGEVDDQNLLVRPPTSEQSGIPSAFPVAPTSPRINSPRDASPQSSYRATSPGVTSPRVASPRVVSPKAASPKVTSPKEASPKVTSPREAYPKATSASAPSLKALSPREASPKANSASAPSQKATAPKEASPRVSSPRSTYPEPSRNHNEISYANRPEATLTLHLSATKIQAAYRSYMARRGFKSLSGLARLQGVVRSRSVKRQTVNAMKQMQLLGRVQMQIQSRRSQMFQALHSQAYMNDKEVESTLSKWTQLTEAGNHDDWNNSMLTKDEVEARRREKVEAVIKRERAMSYAYSHQLWRRNPKSATDIRTSGIPWWWNWLHHQLLPGNDSESQSAVKDVHSTPSRAISEHKPSPWRLSQNFRHLHLDYDSHESVTPRSTKSAVPLRGKLMHTPRRTSSPMSSSSVSKYSRRRASAADSPFNHSMKDDDSLTSCPPFSGPSYMSPTISAKAKFRGKTILEERNIGTPSNSSRRRLSFPLTPSSTGSVKWNKGSGKDAASLKEHESMGDHMSVHSTGSTPTIVGRKPFQRFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12512" e_stop="12489"/>
            <exon e_start="12297" e_stop="11852"/>
            <exon e_start="10590" e_stop="10363"/>
            <exon e_start="10006" e_stop="9875"/>
            <exon e_start="7286" e_stop="6319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.625"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="0.888"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="12512" e_stop="12489" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12488" i_stop="12298" i_length="191"/>
          </intron>
          <exon e_serial="2" e_score="0.888">
            <gDNA_exon_boundary e_start="12297" e_stop="11852" e_length="446"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11851" i_stop="10591" i_length="1261"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10590" e_stop="10363" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10362" i_stop="10007" i_length="356"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10006" e_stop="9875" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.957">
            <gDNA_intron_boundary i_start="9874" i_stop="7287" i_length="2588"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="7286" e_stop="6319" e_length="968"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12512" stop="12489"/>
              <exon start="12297" stop="11852"/>
              <exon start="10590" stop="10363"/>
              <exon start="10006" stop="9875"/>
              <exon start="7286" stop="6319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12103" stop="11852"/>
              <exon start="10590" stop="10507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAGTTGGATGATTGTTACAGGG : CAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATG : GCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATGCAAATTCAGTCAAGGAGAAGTCAGATGTTCCAGGCACTCCATAGTCAAGCTTACATGAATGATAAAGAAGTTGAGAGCACTCTAAGCAAATGGACTCAGCTG : ACTGAAGCAGGTAACCATGATGATTGGAATAATAGTATGCTAACTAAAGATGAGGTAGAAGCAAGGCGACGGGAAAAAGTGGAGGCAGTCATCAAGAGGGAGAGAGCAATGAGCTATGCATATTCTCACCAG : TTGTGGAGACGCAACCCCAAATCAGCTACGGACATCCGAACCAGTGGAATTCCTTGGTGGTGGAACTGGTTGCACCACCAGCTACTTCCAGGAAATGATTCCGAGAGCCAATCTGCTGTAAAAGATGTCCATTCAACACCATCAAGGGCAATATCCGAACACAAGCCAAGTCCATGGCGTCTAAGTCAAAACTTCAGACACCTCCATTTGGATTATGACAGTCATGAATCAGTTACACCAAGGTCAACTAAGTCTGCAGTTCCATTAAGGGGAAAACTAATGCATACTCCCAGAAGAACATCATCACCAATGAGCAGCTCAAGCGTATCAAAGTATTCAAGACGCCGTGCTAGTGCTGCTGATTCCCCTTTCAATCATTCCATGAAGGATGACGACAGCCTCACGAGCTGTCCTCCTTTTTCAGGTCCTAGTTACATGTCACCAACCATCTCAGCCAAAGCTAAATTCAGAGGAAAAACCATTCTTGAGGAGAGAAATATAGGTACTCCATCAAACAGCTCGAGGAGGAGGCTGTCGTTTCCTTTGACTCCAAGTAGTACTGGATCCGTCAAGTGGAACAAAGGATCTGGAAAGGATGCCGCTTCTTTAAAGGAACATGAATCTATGGGAGATCATATGAGTGTGCATTCTACTGGTTCGACGCCTACTATAGTTGGGAGGAAACCATTTCAAAGATTTGTGTAATTTTGTTCCCTGTATGTTGTCCCATCTGTATTTAGCTCTGAAGTTACCTATGTATGTGTATTTATTGGTGTATTTTGTTAACAGAACACTAATGTAAAATAATTAAGTGTGAACATTCTCTTGTTTGTTAGACTTATCTAGTGAAGGAAGAAAGGATAATTAGTATATTTTAAAGTTGGATCTCTCTCTACTTGTACTCTTTTATGCTAAATCATGTTATTGCTAACTTTATGTGGTCACCGATGGACGGTGAATGATGATTC</gDNA_template>
            <first_frame> L  S  W  M  I  V  T  G  :  Q  L  L  Q  E  S  I  H  L  E  M  R  L  L  R  V  L  I  G  L  H  L  L  V  S  L  L  R  G  S  P  L  Q  G  L  S  L  L  R  Q  L  L  Q  R  L  P  L  P  R  K  L  L  R  R  L  H  L  P  G  K  L  I  Q  R  L  P  L  L  V  L  L  P  *  R  L  S  L  L  G  K  L  L  Q  R  R  T  L  L  V  L  L  P  R  R  L  L  L  P  R  R  L  L  Q  G  S  L  P  L  D  L  L  I  Q  S  R  V  G  T  I  M  R  L  A  M  L  T  G  Q  K  Q  L  *  R  S  I  F  Q  Q  P  R  Y  R  Q  P  T  E  V  T  W :   Q  G  G  V  S  N  L  *  V  V  *  Q  D  F  K  E  W  S  E  A  E  V  *  S  G  R  Q  *  M  P  *  N  K  C  N  F  *  V  G  F  K  C  K  F  S  Q  G  E  V  R  C  S  R  H  S  I  V  K  L  T  *  M  I  K  K  L  R  A  L  *  A  N  G  L  S  * :   L  K  Q  V  T  M  M  I  G  I  I  V  C  *  L  K  M  R  *  K  Q  G  D  G  K  K  W  R  Q  S  S  R  G  R  E  Q  *  A  M  H  I  L  T  S :   C  G  D  A  T  P  N  Q  L  R  T  S  E  P  V  E  F  L  G  G  G  T  G  C  T  T  S  Y  F  Q  E  M  I  P  R  A  N  L  L  *  K  M  S  I  Q  H  H  Q  G  Q  Y  P  N  T  S  Q  V  H  G  V  *  V  K  T  S  D  T  S  I  W  I  M  T  V  M  N  Q  L  H  Q  G  Q  L  S  L  Q  F  H  *  G  E  N  *  C  I  L  P  E  E  H  H  H  Q  *  A  A  Q  A  Y  Q  S  I  Q  D  A  V  L  V  L  L  I  P  L  S  I  I  P  *  R  M  T  T  A  S  R  A  V  L  L  F  Q  V  L  V  T  C  H  Q  P  S  Q  P  K  L  N  S  E  E  K  P  F  L  R  R  E  I  *  V  L  H  Q  T  A  R  G  G  G  C  R  F  L  *  L  Q  V  V  L  D  P  S  S  G  T  K  D  L  E  R  M  P  L  L  *  R  N  M  N  L  W  E  I  I  *  V  C  I  L  L  V  R  R  L  L  *  L  G  G  N  H  F  K  D  L  C  N  F  V  P  C  M  L  S  H  L  Y  L  A  L  K  L  P  M  Y  V  Y  L  L  V  Y  F  V  N  R  T  L  M  *  N  N  *  V  *  T  F  S  C  L  L  D  L  S  S  E  G  R  K  D  N  *  Y  I  L  K  L  D  L  S  L  L  V  L  F  Y  A  K  S  C  Y  C  *  L  Y  V  V  T  D  G  R  *  M  M  I  </first_frame>
            <second_frame>  *  V  G  *  L  L  Q  G :   N  F  S  K  N  Q  F  T  *  R  C  V  S  S  E  F  L  *  G  Y  I  S  W  C  H  F  S  E  G  R  L  S  K  G  C  L  S  *  G  S  F  S  K  G  Y  L  S  Q  G  S  F  S  E  G  Y  I  S  Q  G  S  L  S  K  G  Y  L  C  *  C  S  F  P  K  G  S  L  S  *  G  S  F  S  K  G  E  L  C  *  C  S  F  P  E  G  Y  C  S  Q  G  G  F  S  K  G  L  F  P  *  I  Y  L  S  R  A  E  *  E  P  *  *  D  *  L  C  *  Q  A  R  S  N  F  D  A  P  S  F  S  N  Q  D  T  G  S  L  Q  K  L  H   : G  K  E  G  F  Q  I  F  E  W  F  S  K  T  S  R  S  G  Q  K  Q  K  C  K  A  A  D  S  K  C  H  E  T  N  A  T  S  R  *  G  S  N  A  N  S  V  K  E  K  S  D  V  P  G  T  P  *  S  S  L  H  E  *  *  R  S  *  E  H  S  K  Q  M  D  S  A   : D  *  S  R  *  P  *  *  L  E  *  *  Y  A  N  *  R  *  G  R  S  K  A  T  G  K  S  G  G  S  H  Q  E  G  E  S  N  E  L  C  I  F  S  P   : V  V  E  T  Q  P  Q  I  S  Y  G  H  P  N  Q  W  N  S  L  V  V  E  L  V  A  P  P  A  T  S  R  K  *  F  R  E  P  I  C  C  K  R  C  P  F  N  T  I  K  G  N  I  R  T  Q  A  K  S  M  A  S  K  S  K  L  Q  T  P  P  F  G  L  *  Q  S  *  I  S  Y  T  K  V  N  *  V  C  S  S  I  K  G  K  T  N  A  Y  S  Q  K  N  I  I  T  N  E  Q  L  K  R  I  K  V  F  K  T  P  C  *  C  C  *  F  P  F  Q  S  F  H  E  G  *  R  Q  P  H  E  L  S  S  F  F  R  S  *  L  H  V  T  N  H  L  S  Q  S  *  I  Q  R  K  N  H  S  *  G  E  K  Y  R  Y  S  I  K  Q  L  E  E  E  A  V  V  S  F  D  S  K  *  Y  W  I  R  Q  V  E  Q  R  I  W  K  G  C  R  F  F  K  G  T  *  I  Y  G  R  S  Y  E  C  A  F  Y  W  F  D  A  Y  Y  S  W  E  E  T  I  S  K  I  C  V  I  L  F  P  V  C  C  P  I  C  I  *  L  *  S  Y  L  C  M  C  I  Y  W  C  I  L  L  T  E  H  *  C  K  I  I  K  C  E  H  S  L  V  C  *  T  Y  L  V  K  E  E  R  I  I  S  I  F  *  S  W  I  S  L  Y  L  Y  S  F  M  L  N  H  V  I  A  N  F  M  W  S  P  M  D  G  E  *  *  F </second_frame>
            <third_frame>   K  L  D  D  C  Y  R   : A  T  S  P  R  I  N  S  P  R  D  A  S  P  Q  S  S  Y  R  A  T  S  P  G  V  T  S  P  R  V  A  S  P  R  V  V  S  P  K  A  A  S  P  K  V  T  S  P  K  E  A  S  P  K  V  T  S  P  R  E  A  Y  P  K  A  T  S  A  S  A  P  S  L  K  A  L  S  P  R  E  A  S  P  K  A  N  S  A  S  A  P  S  Q  K  A  T  A  P  K  E  A  S  P  R  V  S  S  P  R  S  T  Y  P  E  P  S  R  N  H  N  E  I  S  Y  A  N  R  P  E  A  T  L  T  L  H  L  S  A  T  K  I  Q  A  A  Y  R  S  Y  M  :  A  R  R  G  F  K  S  L  S  G  L  A  R  L  Q  G  V  V  R  S  R  S  V  K  R  Q  T  V  N  A  M  K  Q  M  Q  L  L  G  R  V  Q  M  Q  I  Q  S  R  R  S  Q  M  F  Q  A  L  H  S  Q  A  Y  M  N  D  K  E  V  E  S  T  L  S  K  W  T  Q  L  :  T  E  A  G  N  H  D  D  W  N  N  S  M  L  T  K  D  E  V  E  A  R  R  R  E  K  V  E  A  V  I  K  R  E  R  A  M  S  Y  A  Y  S  H  Q  :  L  W  R  R  N  P  K  S  A  T  D  I  R  T  S  G  I  P  W  W  W  N  W  L  H  H  Q  L  L  P  G  N  D  S  E  S  Q  S  A  V  K  D  V  H  S  T  P  S  R  A  I  S  E  H  K  P  S  P  W  R  L  S  Q  N  F  R  H  L  H  L  D  Y  D  S  H  E  S  V  T  P  R  S  T  K  S  A  V  P  L  R  G  K  L  M  H  T  P  R  R  T  S  S  P  M  S  S  S  S  V  S  K  Y  S  R  R  R  A  S  A  A  D  S  P  F  N  H  S  M  K  D  D  D  S  L  T  S  C  P  P  F  S  G  P  S  Y  M  S  P  T  I  S  A  K  A  K  F  R  G  K  T  I  L  E  E  R  N  I  G  T  P  S  N  S  S  R  R  R  L  S  F  P  L  T  P  S  S  T  G  S  V  K  W  N  K  G  S  G  K  D  A  A  S  L  K  E  H  E  S  M  G  D  H  M  S  V  H  S  T  G  S  T  P  T  I  V  G  R  K  P  F  Q  R  F  V  *  F  C  S  L  Y  V  V  P  S  V  F  S  S  E  V  T  Y  V  C  V  F  I  G  V  F  C  *  Q  N  T  N  V  K  *  L  S  V  N  I  L  L  F  V  R  L  I  *  *  R  K  K  G  *  L  V  Y  F  K  V  G  S  L  S  T  C  T  L  L  C  *  I  M  L  L  L  T  L  C  G  H  R  W  T  V  N  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12510" stop="12489"/>
                    <exon start="12297" stop="11852"/>
                    <exon start="10590" stop="10363"/>
                    <exon start="10006" stop="9875"/>
                    <exon start="7286" stop="6582"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1530</number_coding_nucleotides>
                  <number_encoded_amino_acids>510</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLDDCYRATSPRINSPRDASPQSSYRATSPGVTSPRVASPRVVSPKAASPKVTSPKEASPKVTSPREAYPKATSASAPSLKALSPREASPKANSASAPSQKATAPKEASPRVSSPRSTYPEPSRNHNEISYANRPEATLTLHLSATKIQAAYRSYMARRGFKSLSGLARLQGVVRSRSVKRQTVNAMKQMQLLGRVQMQIQSRRSQMFQALHSQAYMNDKEVESTLSKWTQLTEAGNHDDWNNSMLTKDEVEARRREKVEAVIKRERAMSYAYSHQLWRRNPKSATDIRTSGIPWWWNWLHHQLLPGNDSESQSAVKDVHSTPSRAISEHKPSPWRLSQNFRHLHLDYDSHESVTPRSTKSAVPLRGKLMHTPRRTSSPMSSSSVSKYSRRRASAADSPFNHSMKDDDSLTSCPPFSGPSYMSPTISAKAKFRGKTILEERNIGTPSNSSRRRLSFPLTPSSTGSVKWNKGSGKDAASLKEHESMGDHMSVHSTGSTPTIVGRKPFQRFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="12900" e_stop="12811"/>
            <exon e_start="12490" e_stop="12183"/>
            <exon e_start="12122" e_stop="11852"/>
            <exon e_start="10590" e_stop="10465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.734" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12900" e_stop="12811" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.734" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12810" i_stop="12491" i_length="320"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12490" e_stop="12183" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12182" i_stop="12123" i_length="60"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12122" e_stop="11852" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11851" i_stop="10591" i_length="1261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10590" e_stop="10465" e_length="126"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12900" stop="12811"/>
              <exon start="12490" stop="12183"/>
              <exon start="12122" stop="11852"/>
              <exon start="10590" stop="10465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12103" stop="11852"/>
              <exon start="10590" stop="10507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATGCTAGAAACATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTAT : GGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAA : GGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATG : GCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATG</gDNA_template>
            <first_frame> S  N  A  R  N  M  G  E  K  G  S  W  F  Y  A  L  K  R  V  F  T  C  N  S  K  K  K  S  A  Y  :  G  S  G  K  K  T  A  K  E  K  K  K  G  R  R  I  L  R  H  G  E  F  K  S  F  L  F  R  E  P  S  S  I  E  K  I  L  G  E  V  D  D  Q  N  L  L  V  R  P  P  T  S  E  Q  S  G  I  P  S  A  F  P  V  A  P  T  S  P  R  I  N  S  P  R  D  A  S  P  Q  S  S  Y  R  A  T  S  P  G  V  T  S  P  R  V  A  S  P  R  V  V  S  P  K :   E  A  Y  P  K  A  T  S  A  S  A  P  S  L  K  A  L  S  P  R  E  A  S  P  K  A  N  S  A  S  A  P  S  Q  K  A  T  A  P  K  E  A  S  P  R  V  S  S  P  R  S  T  Y  P  E  P  S  R  N  H  N  E  I  S  Y  A  N  R  P  E  A  T  L  T  L  H  L  S  A  T  K  I  Q  A  A  Y  R  S  Y  M  :  A  R  R  G  F  K  S  L  S  G  L  A  R  L  Q  G  V  V  R  S  R  S  V  K  R  Q  T  V  N  A  M  K  Q  M  Q  L  L  G  R  V  Q  M </first_frame>
            <second_frame>  V  M  L  E  T  W  G  K  K  A  V  G  F  M  P  S  K  G  F  L  R  V  T  P  R  R  S  L  P  M :   D  Q  G  R  K  L  Q  R  K  R  R  R  V  V  E  Y  *  G  M  E  S  S  N  H  S  S  S  E  N  Q  A  V  L  R  K  Y  W  V  R  L  M  I  R  T  Y  L  L  G  L  L  L  L  N  N  L  A  F  H  L  H  S  L  W  H  Q  L  L  Q  E  S  I  H  L  E  M  R  L  L  R  V  L  I  G  L  H  L  L  V  S  L  L  R  G  S  P  L  Q  G  L  S  L  L   : R  K  L  I  Q  R  L  P  L  L  V  L  L  P  *  R  L  S  L  L  G  K  L  L  Q  R  R  T  L  L  V  L  L  P  R  R  L  L  L  P  R  R  L  L  Q  G  S  L  P  L  D  L  L  I  Q  S  R  V  G  T  I  M  R  L  A  M  L  T  G  Q  K  Q  L  *  R  S  I  F  Q  Q  P  R  Y  R  Q  P  T  E  V  T  W :   Q  G  G  V  S  N  L  *  V  V  *  Q  D  F  K  E  W  S  E  A  E  V  *  S  G  R  Q  *  M  P  *  N  K  C  N  F  *  V  G  F  K   </second_frame>
            <third_frame>   *  C  *  K  H  G  G  K  R  Q  L  V  L  C  P  Q  K  G  F  Y  V  *  L  Q  E  E  V  C  L   : W  I  R  E  E  N  C  K  G  K  E  E  G  S  *  N  T  E  A  W  R  V  Q  I  I  P  L  Q  R  T  K  Q  Y  *  E  N  T  G  *  G  *  *  S  E  P  T  C  *  A  S  Y  F  *  T  I  W  H  S  I  C  I  P  C  G  T  N  F  S  K  N  Q  F  T  *  R  C  V  S  S  E  F  L  *  G  Y  I  S  W  C  H  F  S  E  G  R  L  S  K  G  C  L  S  *  :  G  S  L  S  K  G  Y  L  C  *  C  S  F  P  K  G  S  L  S  *  G  S  F  S  K  G  E  L  C  *  C  S  F  P  E  G  Y  C  S  Q  G  G  F  S  K  G  L  F  P  *  I  Y  L  S  R  A  E  *  E  P  *  *  D  *  L  C  *  Q  A  R  S  N  F  D  A  P  S  F  S  N  Q  D  T  G  S  L  Q  K  L  H   : G  K  E  G  F  Q  I  F  E  W  F  S  K  T  S  R  S  G  Q  K  Q  K  C  K  A  A  D  S  K  C  H  E  T  N  A  T  S  R  *  G  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12900" stop="12811"/>
                    <exon start="12490" stop="12183"/>
                    <exon start="12122" stop="11852"/>
                    <exon start="10590" stop="10465"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNARNMGEKGSWFYALKRVFTCNSKKKSAYGSGKKTAKEKKKGRRILRHGEFKSFLFREPSSIEKILGEVDDQNLLVRPPTSEQSGIPSAFPVAPTSPRINSPRDASPQSSYRATSPGVTSPRVASPRVVSPKEAYPKATSASAPSLKALSPREASPKANSASAPSQKATAPKEASPRVSSPRSTYPEPSRNHNEISYANRPEATLTLHLSATKIQAAYRSYMARRGFKSLSGLARLQGVVRSRSVKRQTVNAMKQMQLLGRVQM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="14030" e_stop="13319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="14030" e_stop="13319" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14030" stop="13319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTAATTTACTTTCTGTAGACTCTGCAAGTTTGGATGGTGATTTTAGGGCATAAAAATGTGTTCTTTACTCCTTTGTGAACTAAAAATTTGATTTTTATTTTTGTGTGTCTTTATATGTGGTGTAGAATTTGGGGGTTTGTTTTTTGATTTTGATTTTATAATTTCTTGATATTATTTGTCTGTTACATTCTTGGTAGTTGTCAAGGAAATAAGGACAAAACAACAAATTTCATCATCAGAATGTAATTTTAGCATCTATTTGTAAAAAAAATATCTATTTTTTTCTGCCCCTTGTGTTTCTCTCTTCTGATCTCATCACCATCTTGAAGAAGGTTGAAAAGCAGCAAGGAATTTATTTTGTTTTTGAAAAAAAAGGAAGAGTATTATGAAATCATCTGGATGATGATGATGATGACATGAACTTGTGTGTTATTGTCTTTAGCTAGTTTAAAAATTGGACCTTTCTTTAGTTTGATTCCTTCTTGTTCTTGAAGTTTGAATTTTAAAGTCAACTCAAAGAATGAAATATCTAGAAAAGAAATTAAAGGGACCTAAAAACTAAGTTGGACAGTTTCTTCACTTTCGACGTTGCACCCATGCCGGATTATCCAAAAATACACTATTTTTGAAGAAACTTTTAGAGATTTGGACACATTTTTGAAGAGTTTGAGCAACATAGACTAAAAATTCATTTCCCTGTTTGCCTTT</gDNA_template>
            <first_frame> *  I  N  L  L  S  V  D  S  A  S  L  D  G  D  F  R  A  *  K  C  V  L  Y  S  F  V  N  *  K  F  D  F  Y  F  C  V  S  L  Y  V  V  *  N  L  G  V  C  F  L  I  L  I  L  *  F  L  D  I  I  C  L  L  H  S  W  *  L  S  R  K  *  G  Q  N  N  K  F  H  H  Q  N  V  I  L  A  S  I  C  K  K  N  I  Y  F  F  L  P  L  V  F  L  S  S  D  L  I  T  I  L  K  K  V  E  K  Q  Q  G  I  Y  F  V  F  E  K  K  G  R  V  L  *  N  H  L  D  D  D  D  D  D  M  N  L  C  V  I  V  F  S  *  F  K  N  W  T  F  L  *  F  D  S  F  L  F  L  K  F  E  F  *  S  Q  L  K  E  *  N  I  *  K  R  N  *  R  D  L  K  T  K  L  D  S  F  F  T  F  D  V  A  P  M  P  D  Y  P  K  I  H  Y  F  *  R  N  F  *  R  F  G  H  I  F  E  E  F  E  Q  H  R  L  K  I  H  F  P  V  C  L  </first_frame>
            <second_frame>  K  L  I  Y  F  L  *  T  L  Q  V  W  M  V  I  L  G  H  K  N  V  F  F  T  P  L  *  T  K  N  L  I  F  I  F  V  C  L  Y  M  W  C  R  I  W  G  F  V  F  *  F  *  F  Y  N  F  L  I  L  F  V  C  Y  I  L  G  S  C  Q  G  N  K  D  K  T  T  N  F  I  I  R  M  *  F  *  H  L  F  V  K  K  I  S  I  F  F  C  P  L  C  F  S  L  L  I  S  S  P  S  *  R  R  L  K  S  S  K  E  F  I  L  F  L  K  K  K  E  E  Y  Y  E  I  I  W  M  M  M  M  M  T  *  T  C  V  L  L  S  L  A  S  L  K  I  G  P  F  F  S  L  I  P  S  C  S  *  S  L  N  F  K  V  N  S  K  N  E  I  S  R  K  E  I  K  G  T  *  K  L  S  W  T  V  S  S  L  S  T  L  H  P  C  R  I  I  Q  K  Y  T  I  F  E  E  T  F  R  D  L  D  T  F  L  K  S  L  S  N  I  D  *  K  F  I  S  L  F  A  F </second_frame>
            <third_frame>   N  *  F  T  F  C  R  L  C  K  F  G  W  *  F  *  G  I  K  M  C  S  L  L  L  C  E  L  K  I  *  F  L  F  L  C  V  F  I  C  G  V  E  F  G  G  L  F  F  D  F  D  F  I  I  S  *  Y  Y  L  S  V  T  F  L  V  V  V  K  E  I  R  T  K  Q  Q  I  S  S  S  E  C  N  F  S  I  Y  L  *  K  K  Y  L  F  F  S  A  P  C  V  S  L  F  *  S  H  H  H  L  E  E  G  *  K  A  A  R  N  L  F  C  F  *  K  K  R  K  S  I  M  K  S  S  G  *  *  *  *  *  H  E  L  V  C  Y  C  L  *  L  V  *  K  L  D  L  S  L  V  *  F  L  L  V  L  E  V  *  I  L  K  S  T  Q  R  M  K  Y  L  E  K  K  L  K  G  P  K  N  *  V  G  Q  F  L  H  F  R  R  C  T  H  A  G  L  S  K  N  T  L  F  L  K  K  L  L  E  I  W  T  H  F  *  R  V  *  A  T  *  T  K  N  S  F  P  C  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0060E11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23389" PGL_stop="20493"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23389" e_stop="23277"/>
            <exon e_start="21144" e_stop="20493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23389" e_stop="23277" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23276" i_stop="21145" i_length="2132"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="21144" e_stop="20493" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23389" stop="23277"/>
              <exon start="21144" stop="20493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTCTTCCTCTTCTTCTTCTTATTCTTCATTTCTCTATATTTCTTTGAATCACAAAGTTTTGATTTTCTTCTTTGTTCATGCAAGATCCAAAGAACTCTTCACAAGCAAG : GAAGGCTTGGTACCAAAAGGCAATGGAAATGGCTTCTCTATGGAAAACATTTGCCAAGCCAAGTGAAATTCCCACAACAAATCCAACACTATGGAGAAGCATATCTAAGTCATCATCAAGAGAGATATCAAACACTAATAATAGATCACAAAAGCTAAGAAGATGCACTTCTTTAAGAGTTGCAACATCTTTCACTAGAGTATGTCTATGTGCACCAATATCTTCCTATAGTGAAGTGTTTCAAGTAGACCATCATCATGTCGTTCCACCAAGGAAAAGTAATTGTAGAACAAAGCCAATGATGAGTAGTATTTCACAAGAAAGAATACCAAGTGGAAGGATGAGTTTGGAAGGGAGGAAGATATTTAGGGGAAAATCATTGAATGATGATGTGTTAATGAAGAGATTTGTGATTGAAGAAGAAGCAATGATGCAAGTAAGAAGAAGGAATCAAATGGAAGTTATTAGGAGAAGAAACTCTTTGAGGAGAAGAAAAAAACTTGGGCCAAGTCCTTTAAGTAGAATGGTTTTGGCTGAGGAAGATTAATTCAACTAATTTATTTAATAGTATTTACTTACTTTTGATTAGTTTCTATGTCCATTTTAAATATAGCCATTTGAGTATGTTTAATTTAACCTTCTTTCTAATTAA</gDNA_template>
            <first_frame> K  F  L  P  L  L  L  L  I  L  H  F  S  I  F  L  *  I  T  K  F  *  F  S  S  L  F  M  Q  D  P  K  N  S  S  Q  A  R :   K  A  W  Y  Q  K  A  M  E  M  A  S  L  W  K  T  F  A  K  P  S  E  I  P  T  T  N  P  T  L  W  R  S  I  S  K  S  S  S  R  E  I  S  N  T  N  N  R  S  Q  K  L  R  R  C  T  S  L  R  V  A  T  S  F  T  R  V  C  L  C  A  P  I  S  S  Y  S  E  V  F  Q  V  D  H  H  H  V  V  P  P  R  K  S  N  C  R  T  K  P  M  M  S  S  I  S  Q  E  R  I  P  S  G  R  M  S  L  E  G  R  K  I  F  R  G  K  S  L  N  D  D  V  L  M  K  R  F  V  I  E  E  E  A  M  M  Q  V  R  R  R  N  Q  M  E  V  I  R  R  R  N  S  L  R  R  R  K  K  L  G  P  S  P  L  S  R  M  V  L  A  E  E  D  *  F  N  *  F  I  *  *  Y  L  L  T  F  D  *  F  L  C  P  F  *  I  *  P  F  E  Y  V  *  F  N  L  L  S  N  * </first_frame>
            <second_frame>  N  F  F  L  F  F  F  L  F  F  I  S  L  Y  F  F  E  S  Q  S  F  D  F  L  L  C  S  C  K  I  Q  R  T  L  H  K  Q   : G  R  L  G  T  K  R  Q  W  K  W  L  L  Y  G  K  H  L  P  S  Q  V  K  F  P  Q  Q  I  Q  H  Y  G  E  A  Y  L  S  H  H  Q  E  R  Y  Q  T  L  I  I  D  H  K  S  *  E  D  A  L  L  *  E  L  Q  H  L  S  L  E  Y  V  Y  V  H  Q  Y  L  P  I  V  K  C  F  K  *  T  I  I  M  S  F  H  Q  G  K  V  I  V  E  Q  S  Q  *  *  V  V  F  H  K  K  E  Y  Q  V  E  G  *  V  W  K  G  G  R  Y  L  G  E  N  H  *  M  M  M  C  *  *  R  D  L  *  L  K  K  K  Q  *  C  K  *  E  E  G  I  K  W  K  L  L  G  E  E  T  L  *  G  E  E  K  N  L  G  Q  V  L  *  V  E  W  F  W  L  R  K  I  N  S  T  N  L  F  N  S  I  Y  L  L  L  I  S  F  Y  V  H  F  K  Y  S  H  L  S  M  F  N  L  T  F  F  L  I   </second_frame>
            <third_frame>   I  S  S  S  S  S  S  Y  S  S  F  L  Y  I  S  L  N  H  K  V  L  I  F  F  F  V  H  A  R  S  K  E  L  F  T  S  K  :  E  G  L  V  P  K  G  N  G  N  G  F  S  M  E  N  I  C  Q  A  K  *  N  S  H  N  K  S  N  T  M  E  K  H  I  *  V  I  I  K  R  D  I  K  H  *  *  *  I  T  K  A  K  K  M  H  F  F  K  S  C  N  I  F  H  *  S  M  S  M  C  T  N  I  F  L  *  *  S  V  S  S  R  P  S  S  C  R  S  T  K  E  K  *  L  *  N  K  A  N  D  E  *  Y  F  T  R  K  N  T  K  W  K  D  E  F  G  R  E  E  D  I  *  G  K  I  I  E  *  *  C  V  N  E  E  I  C  D  *  R  R  S  N  D  A  S  K  K  K  E  S  N  G  S  Y  *  E  K  K  L  F  E  E  K  K  K  T  W  A  K  S  F  K  *  N  G  F  G  *  G  R  L  I  Q  L  I  Y  L  I  V  F  T  Y  F  *  L  V  S  M  S  I  L  N  I  A  I  *  V  C  L  I  *  P  S  F  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23323" stop="23277"/>
                    <exon start="21144" stop="20598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSLFMQDPKNSSQARKAWYQKAMEMASLWKTFAKPSEIPTTNPTLWRSISKSSSREISNTNNRSQKLRRCTSLRVATSFTRVCLCAPISSYSEVFQVDHHHVVPPRKSNCRTKPMMSSISQERIPSGRMSLEGRKIFRGKSLNDDVLMKRFVIEEEAMMQVRRRNQMEVIRRRNSLRRRKKLGPSPLSRMVLAEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32838" PGL_stop="34232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32838" e_stop="33009"/>
            <exon e_start="33754" e_stop="34232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.894"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="32838" e_stop="33009" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33010" i_stop="33753" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.894">
            <gDNA_exon_boundary e_start="33754" e_stop="34232" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32838" stop="33009"/>
              <exon start="33754" stop="34232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAACTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTAAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCTTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCATATCATCTTCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGTTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCTAAGTACCTCCAATTGAGTCGGTCTCGATAGTTCGTGAGTTTTTAGATGTGTTTCCCGCAGACCTTCCGGGTATGCCACCGGATAGAGATATTTACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGTATCCCGTGGAGTTAAGAGAGTTAAAGGACCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  Q  V  C  H  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  L  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  L  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  H  I  I  F  F  L  R  A  K  K  M  V  S  K  V  C  L  A  F  L  A  H  L  R  D  D  T  T  *  V  P  P  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  Y  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  Y  P  V  E  L  R  E  L  K  D  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  N  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  F  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  *  I  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  I  S  S  S  F  F  V  L  R  K  W  L  V  R  F  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  S  R  *  F  V  S  F  *  M  C  F  P  Q  T  F  R  V  C  H  R  I  E  I  F  T  S  A  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  C  I  P  W  S  *  E  S  *  R  T  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G  V  L  R   </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  T  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  T  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  S  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  K  F  C  D  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  L  S  T  S  N  *  V  G  L  D  S  S  *  V  F  R  C  V  S  R  R  P  S  G  Y  A  T  G  *  R  Y  L  L  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  V  S  R  G  V  K  R  V  K  G  P  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L  G  C  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32874" stop="33009"/>
                    <exon start="33754" stop="33986"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSCIIQVCHQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSLNFAILDCNAKTVTLAKLGTDPLVWEGDYTSNPVHIIFFLRAKKMVSKVCLAFLAHLRDDTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33987" stop="34232"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPPIESVSIVREFLDVFPADLPGMPPDRDIYFCIDLEPGTRPISIPPYRMYPVELRELKDQLQELLSKGFIRPSASPWGAPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33861" PGL_stop="33531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33861" e_stop="33531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="33861" e_stop="33531" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33861" stop="33531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAAGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTTAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCTCCACAAAAGTTATCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAGGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  L  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  L  S  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  T  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  R  I  H  M  K  M  *  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  K  L  G  *  R  H  S  F  S  I  T  I  Q  D  R  K  I  *  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  L  H  K  S  Y  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  H  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  G  Y  I  *  K  C  R  A  R  V  K  *  Y  R  S  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  S  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  R  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  S  T  K  V  I  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  D  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33730" stop="33533"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLSTKVIKQDLYTFSTITDSPTGVDTRIGMSSNSQCKLRPLANAEDTYENVEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34851" PGL_stop="34141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34851" e_stop="34141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="34851" e_stop="34141" e_length="711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34851" stop="34141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCTTTGACAAATCAACGGTAGTAGCTAGCTAGACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCATTGTCTCAATCTTAGAAGGATCCACCATCACCCCGTCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCCAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTAATACAAATTCGTAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCTCTTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCTATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGATATTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGTCCTTTAACTCTCTTAACTCCACGG</gDNA_template>
            <first_frame> E  S  F  D  K  S  T  V  V  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  V  L  R  N  H  M  P  Q  E  G  H  C  I  Q  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  V  H  E  S  S  R  G  I  R  K  T  K  R  H  *  Y  K  F  V  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  S  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  Y  A  R  N  G  I  L  V  L  N  S  Y  L  V  Q  L  P  I  F  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  P  E  H  P  K  G  M  H  L  V  *  *  N  L  Y  L  T  T  L  E  V  G  P  L  T  L  L  T  P  R </first_frame>
            <second_frame>  N  P  L  T  N  Q  R  *  *  L  A  R  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  I  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  F  M  K  A  A  G  A  F  V  R  P  K  D  I  N  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  L  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  R  Y  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  R  S  T  P  R  G  C  T  W  S  N  E  T  F  T  *  Q  L  L  K  L  V  L  *  L  S  *  L  H   </second_frame>
            <third_frame>   I  L  *  Q  I  N  G  S  S  *  L  D  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  P  R  P  *  K  P  H  A  P  R  R  T  L  H  P  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  L  I  Q  I  R  N  A  H  T  *  F  E  K  Q  S  L  A  H  P  L  L  L  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  L  C  E  E  W  D  T  C  S  *  *  L  P  C  S  T  A  D  I  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  S  F  N  S  L  N  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34791" stop="34588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HISRSYPILHCLNLRRIHHHPVLRNHMPQEGHCIQPKLTLGEFGIKLFLPQHFQYHSQMLLMFLLAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34655" stop="34458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSRYGLKIPFIKFMKAAGAFVRPKDINTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="63320" PGL_stop="57160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63320" e_stop="63154"/>
            <exon e_start="59414" e_stop="59356"/>
            <exon e_start="58268" e_stop="58087"/>
            <exon e_start="57606" e_stop="57160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63320" e_stop="63154" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.947">
            <gDNA_intron_boundary i_start="63153" i_stop="59415" i_length="3739"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59414" e_stop="59356" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59355" i_stop="58269" i_length="1087"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58268" e_stop="58087" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.958">
            <gDNA_intron_boundary i_start="58086" i_stop="57607" i_length="480"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="57606" e_stop="57160" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63320" stop="63154"/>
              <exon start="59414" stop="59356"/>
              <exon start="58268" stop="58087"/>
              <exon start="57606" stop="57160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAGAGAAATGGGTGTGATCCAGGTAGCATTGCTGTGCTTTGTTGTTGGAGTTTTGGGGGCAAAAGCTGAGCAGTTGAGCACGAAAGAGTGTGAAAATCTCGGGTTTACGGGTTTAGCTCTATGCTCCGATTGTAGGACTCTTGCTGAGTATGTCAAAGATCAAG : AGTTGGTGTCTGAATGTTTGAGCTGTTGCACAGAAGACTCTGATGATGCCATGAGTAAG : GTTGTTTATTCTGGAGCAGTTTTGGAAGTCTGCATGAGAAAACTAGTTTTCTATCCCGAAGTCGTTGGGTTCATTGAAGAAGAGAAAGACCAATTCCCTTTTGTAAAAGTTCAATATGCATTTAATTCTCCACCAAAGTTGATCATGTTGGATGATCACGGAGAGCAAAAGGAAACCATTAG : AATTGATAACTGGAAACGTGAGCACATATTGCAGTTCTTGAAAGAGAAGGTTAAGCCATCATCCGATATCTAATGTGGCTGGTAATCTAGTCCCGTTTTGATCAAGAGCAGTGTTAAGTGTTCAGCCTGCATCTAGTTTCAGAAAACTCCAGTTCCCCACTTATTGTTTTTAAGAAACTGTGAGATGAGATTAATTGCTACACACAAGTTCAAAAGCTACTTTCATTTACAAAACATGCAACTGGATCCTTGTGCTTTTGACGTATCGTTTGGTTTCGTCAGTCCTGCTCTCTCTCTCTCTCTCTTTTTCTATAACTTTCTTTAATTACTCATTACCAGATTATTGTTAGGAATACCCCAGAGAAGGGAACACATCATATTATGAAGGATAATTACATGAGGAGTTGGAATATCCAGTTAGCTGTGCAAGCCTGCTTCTCTATAATA</gDNA_template>
            <first_frame> R  E  R  N  G  C  D  P  G  S  I  A  V  L  C  C  W  S  F  G  G  K  S  *  A  V  E  H  E  R  V  *  K  S  R  V  Y  G  F  S  S  M  L  R  L  *  D  S  C  *  V  C  Q  R  S  R :   V  G  V  *  M  F  E  L  L  H  R  R  L  *  *  C  H  E  *   : G  C  L  F  W  S  S  F  G  S  L  H  E  K  T  S  F  L  S  R  S  R  W  V  H  *  R  R  E  R  P  I  P  F  C  K  S  S  I  C  I  *  F  S  T  K  V  D  H  V  G  *  S  R  R  A  K  G  N  H  *  :  N  *  *  L  E  T  *  A  H  I  A  V  L  E  R  E  G  *  A  I  I  R  Y  L  M  W  L  V  I  *  S  R  F  D  Q  E  Q  C  *  V  F  S  L  H  L  V  S  E  N  S  S  S  P  L  I  V  F  K  K  L  *  D  E  I  N  C  Y  T  Q  V  Q  K  L  L  S  F  T  K  H  A  T  G  S  L  C  F  *  R  I  V  W  F  R  Q  S  C  S  L  S  L  S  L  F  L  *  L  S  L  I  T  H  Y  Q  I  I  V  R  N  T  P  E  K  G  T  H  H  I  M  K  D  N  Y  M  R  S  W  N  I  Q  L  A  V  Q  A  C  F  S  I  I </first_frame>
            <second_frame>  E  R  E  M  G  V  I  Q  V  A  L  L  C  F  V  V  G  V  L  G  A  K  A  E  Q  L  S  T  K  E  C  E  N  L  G  F  T  G  L  A  L  C  S  D  C  R  T  L  A  E  Y  V  K  D  Q   : E  L  V  S  E  C  L  S  C  C  T  E  D  S  D  D  A  M  S  K  :  V  V  Y  S  G  A  V  L  E  V  C  M  R  K  L  V  F  Y  P  E  V  V  G  F  I  E  E  E  K  D  Q  F  P  F  V  K  V  Q  Y  A  F  N  S  P  P  K  L  I  M  L  D  D  H  G  E  Q  K  E  T  I  R :   I  D  N  W  K  R  E  H  I  L  Q  F  L  K  E  K  V  K  P  S  S  D  I  *  C  G  W  *  S  S  P  V  L  I  K  S  S  V  K  C  S  A  C  I  *  F  Q  K  T  P  V  P  H  L  L  F  L  R  N  C  E  M  R  L  I  A  T  H  K  F  K  S  Y  F  H  L  Q  N  M  Q  L  D  P  C  A  F  D  V  S  F  G  F  V  S  P  A  L  S  L  S  L  F  F  Y  N  F  L  *  L  L  I  T  R  L  L  L  G  I  P  Q  R  R  E  H  I  I  L  *  R  I  I  T  *  G  V  G  I  S  S  *  L  C  K  P  A  S  L  *   </second_frame>
            <third_frame>   R  E  K  W  V  *  S  R  *  H  C  C  A  L  L  L  E  F  W  G  Q  K  L  S  S  *  A  R  K  S  V  K  I  S  G  L  R  V  *  L  Y  A  P  I  V  G  L  L  L  S  M  S  K  I  K  :  S  W  C  L  N  V  *  A  V  A  Q  K  T  L  M  M  P  *  V  R :   L  F  I  L  E  Q  F  W  K  S  A  *  E  N  *  F  S  I  P  K  S  L  G  S  L  K  K  R  K  T  N  S  L  L  *  K  F  N  M  H  L  I  L  H  Q  S  *  S  C  W  M  I  T  E  S  K  R  K  P  L   : E  L  I  T  G  N  V  S  T  Y  C  S  S  *  K  R  R  L  S  H  H  P  I  S  N  V  A  G  N  L  V  P  F  *  S  R  A  V  L  S  V  Q  P  A  S  S  F  R  K  L  Q  F  P  T  Y  C  F  *  E  T  V  R  *  D  *  L  L  H  T  S  S  K  A  T  F  I  Y  K  T  C  N  W  I  L  V  L  L  T  Y  R  L  V  S  S  V  L  L  S  L  S  L  S  F  S  I  T  F  F  N  Y  S  L  P  D  Y  C  *  E  Y  P  R  E  G  N  T  S  Y  Y  E  G  *  L  H  E  E  L  E  Y  P  V  S  C  A  S  L  L  L  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060E11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63319" stop="63154"/>
                    <exon start="59414" stop="59356"/>
                    <exon start="58268" stop="58087"/>
                    <exon start="57606" stop="57534"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EREMGVIQVALLCFVVGVLGAKAEQLSTKECENLGFTGLALCSDCRTLAEYVKDQELVSECLSCCTEDSDDAMSKVVYSGAVLEVCMRKLVFYPEVVGFIEEEKDQFPFVKVQYAFNSPPKLIMLDDHGEQKETIRIDNWKREHILQFLKEKVKPSSDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 55 chains have been computed
$ 
$ memory statistics:
$ 23336 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 2121 bytes was the average size of a spliced alignment
$ 13424 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1917 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 63 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:32:20
-->
