<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:44:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9145" ref_strand="+" ref_description="SGN-M9145 C2_At5g61140 [cosii_markers]">
      <seq>tgaaagtagcctgagagagcaacttcatgaccacatcaacgctgagattgttactggaacaatctctcataaagaggacgctatgcattatctcacttggacctacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcagaacctgggattctaaattcttatttgtctagcttggtgcaaagcacatttgaggatcttgaagactctggatgcatcaaggttaccgaggacagtgttgaaccactgatgttgggctcaatagcatctcagtattatctgaagtacaccactgtatcaatgtttggctcaaaaataggatctgatacatcacttgaggttttcctacaaatactgtctggtgcttctgaatatgatgagctcccggtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtcgaccacaatcgcctggatgatcctcatgtgaaagcaaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctggatcaaagtatacgtgttatccaggctatgatagatatttgtgccaacagtggatggctctcaagtaccattacctgtatgcatctgttgcaaatggtcatgcagggcttgtggtttgatagagactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatacttccgcaagtgaactgtatgctctgaagagagtgtctttctctggtcgtttgcagacacacatggatttgccatccactctgaccaatttccaggggataaagctcattctagtatcggattcttacattgggtttgaacaagaacactctattgaaggattgacttaatctggaagaaactataccaactccagattgtaatgcaatgctcccaaaatcaggatttgactttgtatagcacaaaggctcactttttcacaatcagttatagaagttgtgttacggtctacatttgtaatgagatattgctttgtaattttcttgagtaattgatcggcatccttcatttttctttgtcatgtagatccaattgtatatatgcatcagggtactgttgaaagtcttatacacacaccctaatcaatatagagctttccattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33642" stop="41656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33942" g_stop="34062" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34063" i_stop="35617" i_length="1555">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35618" g_stop="35685" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="189" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35686" i_stop="35763" i_length="78">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35764" g_stop="35929" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="355" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35930" i_stop="36031" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36032" g_stop="36094" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36095" i_stop="36443" i_length="349">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36444" g_stop="36539" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="514" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36540" i_stop="36805" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36806" g_stop="36973" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="682" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36974" i_stop="39135" i_length="2162">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39136" g_stop="39306" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="853" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39307" i_stop="40251" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40252" g_stop="40401" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="1003" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40402" i_stop="40466" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="40467" g_stop="40598" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1004" r_stop="1135" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="40599" i_stop="41006" i_length="408">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="41007" g_stop="41362" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1136" r_stop="1491" r_length="356" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-M9145" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1491</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33942" e_stop="34062"/>
          <exon e_start="35618" e_stop="35685"/>
          <exon e_start="35764" e_stop="35929"/>
          <exon e_start="36032" e_stop="36094"/>
          <exon e_start="36444" e_stop="36539"/>
          <exon e_start="36806" e_stop="36973"/>
          <exon e_start="39136" e_stop="39306"/>
          <exon e_start="40252" e_stop="40401"/>
          <exon e_start="40467" e_stop="40598"/>
          <exon e_start="41007" e_stop="41362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTGGTATGGTTTTGTGATCCTATGGCAGAGAATTTATTTTGTTGCTCCAAATTTATAGTCTTGCATTACCGATCAAGAAAAAATTTCAATCTTGCAGCAATGGCAATGCTAAGTTAGGAACCACCATCATTATATTAAGAGTGCTTGATGCATGTTTTTCTTTCAGCAAGTAATCATCAGTAATAAGTAGGTTACTTGGTTGCTGATTGATATGGGTTACTCATTTAAGGTAAATATATTAATATGAAATTTCTAAAGAAGATGTAGGTAACTAAGTTGTGTCTCCTACAGTGAAGAACATATAAATGGAAATCCAGTAAAGGAAATGAGTCCTTTATAATAAGGTAACACGGGAGATTTATGAGTTGATTAATTTAGCTTGCAAAAAGAAAAGTTAAGGGAGGCCACAATAGTGCAACCTTGTTCTGATTTTATCTTGCTTATGTTATCTTTTCCGGAAGTCTCAAATTTTATTTTCTAAGTAAGCATTACCAACATGTGACAACTGAAACTGGAAAAAGAAAGTGGTAGGTAAAGGGCTAATTTCAGTTGTACCATAGTGATCTTTATGGTAACATGATTTGTTTCAGATTGTGGTGGACTCCAAAATCTATATTATTGTAATCAACTAGCAGACAAAGGGAACACACTTCAGGCAGCAGCTAAAGTTGCACAAGAAAATATGTGTCTGTTTGATGTGCTTTTACAAGCTTACTGCTGCTAGATACCATCAAAGCATTTTCTATGAAAAAAGTTGGGAGAAAGTGAGGTCTACCCCACGTACCAAAGTCTTGTCAAAGTGCAAGTTGAAATAGCTCGTCAGCTTTAACCAGACCCTAAGGGATAGGAATAGCTAATCCACAAATTATGTGTAGTAATTATCTAACTTGATTGACCCTTGTTTATTTATGTAACATAAGATTATTTTAGATTCAAAATGAGAGAGCTGATTTAAAGCAATAACAATCAGCATTGAGTGGTAAAACAATGGTTTGCTTATGCTATTCATTGTATCCTTCCGCCCCAACAAATGTAGTGCCAACTGTAGGTGTTGATGTTGCATGTGTATTATTTTCCACCTTGTGGGAAAGAACAAAAGAAAAGTTACATTTCTGTGTACTGCCTGTATAGATGCCTTTTATATAGTGAATAATTGATCTATGGGTTAGTCACAATAGGGAATAATTGGTTATTCCGTGGTTCAAATGGAATTCTTGCCCTAGTGGCAAGGTCCCTCCACCTCCAGTCACTAATATGTGGTTCGGGACACTCAGAGGGAAAAGTAGGCGAGCACTGTTTCTCCTGGGAAGGGGAAGCATTGAGGTAAAGAAGGATGTTACCAATTTAAAAAAAAAAAAAAAGATAAAGGAGGAGATGATATGTCACCTAAATGAAAAGGATGAGAAGAAAGTCAATTTTCACCTCAATCTACTAATGTATTTCTGTGGATTGACAATGTCATCAAAGAAAATCTTATATGTTTGAAGAATTACCAAAAATAGTGTACTGTTCTTTCCCTGCTAGTTATTATGTTTATTAACCATAGAAGTTTTTGCAGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAGGTAAAATGAAAGCACTACATAGTCTTGAAATAGCTTTTCTTGTATATTTCTGTGTGTGCTCACATTATTTATGAACAGCTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAGGTTTGTAGAACACCTAACATGGATGTCTAATCCTTATTTCTCTATTTCAATGTTTTTAAATTATATTTCTTGGCATTACTTCCTATTTATCTTTCACCCCAGGTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAGGTAATTTTTTTAGCTAGGCAATATATATATATATATATATATATATATATATATTTGAAGACAGTTGTTGCTGAACAATGGTTTGTTGGTTTTCAACTCTCTTAATTTCTTTACTTTTTTCCCTTAGTTGTATATTACTTGCTAGTTCTAACTAGTAAACCAATAACATTGATGTCCTGGCATTACACCAATTGTTGCAGACACTTCTGAATTATTGTCTGCAAATCTAAATTAGTATCGATAATTCCGCTAAGAAATTGCCTGGATTTTGAAACTATCAAACTATGCATCAACTACTTCTTTATTTGTATGTTGTACACATCATCTGCTTATTGATCACCTATTCCAGGAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAGGTTGATATCTGATGATATTGTATATACATATACTTATTTGGTATTAAACTTAACCTGACATTTTTTTGTACACCAGTTAGCTGGTGTTTCCCCCTCTTCTAGATGAATCAGTGTCCCAGTAGCAGTCATTTTCTTTTTATGATGGTCTCTGAGAAATTAAACACCTACTCTCCCCCAGCACACACACACAAACAAACAAAATTAAATTAAAAATAGAAGTTAATAACAGATCAGCTTTTAGAAGATAGAGTATGACATATTTGTCTTCTTATCTTGGAGTCAAGATTCAGTCCTCCCAGCTACCCACCCACTCCAGGAAGGGGAAAAAAACATGTTTTCATTCTGTGCATGTAAAAGATGTTACACCTTCTATGTTGGGACTGAAAAGTTGAGATGTTTCTATTTCAGGGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAATGTCCA</genome_strand>
        <mrna_strand>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG..............................................................................CTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG......................................................................................................GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG.............................................................................................................................................................................................................................................................................................................................................................GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8611-2" ref_strand="+" ref_description="SGN-M8611-2 C2_At5g07960-2 [cosii_markers]">
      <seq>caaaatcattttcggcgcagaaactacagcaggcatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgttcagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaaacagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtcccaggggaaacaagaaaacttgatggaattgtttcaggcacaaactcatttataagaacattgatgtcaaacatgtggatgtcgtcccgaaatatttgcactgttttgatgattctgagctaaatgaagttgtagaataggttttttgtagtttgagctctttttacagggctattctgttctaagttctaattgctcttagcaaaaactagacaattattattgtggtgatataacattctgctagcgaatccaggtttctctatccttccaacttccactatatttcaatttatgtcttgtaatgatggaaacagctaaagattaactcctcttcagtattctacctccaattgttctgttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76155" stop="79406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76455" g_stop="76629" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="276" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79101" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="621" r_length="345" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-M8611-2" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8611-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76455" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCATTTTCGGAGCAGAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</genome_strand>
        <mrna_strand>CAAAATCATTTTCGGCGCAGAAACTACAGCAGGCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTCAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAACAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCAGGGGAAACAAGAAAACTTGATGGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGATGTCAAACATGTGGATGTCGTCCCGAAATATTTGCACTGTTTTGATGATTCTGAGCTAAATGAAGTTGTAGAATAGGTTTTTTGTAGTTTGAGCTCTTTTTACAGGGCTATTCTGTTCTAAGTTCTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATA-TAACATTCTGCTAGCGAATCCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="33942" PGL_stop="41362"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33942" e_stop="34062"/>
            <exon e_start="35618" e_stop="35685"/>
            <exon e_start="35764" e_stop="35929"/>
            <exon e_start="36032" e_stop="36094"/>
            <exon e_start="36444" e_stop="36539"/>
            <exon e_start="36806" e_stop="36973"/>
            <exon e_start="39136" e_stop="39306"/>
            <exon e_start="40252" e_stop="40401"/>
            <exon e_start="40467" e_stop="40598"/>
            <exon e_start="41007" e_stop="41362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.308" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33942" e_stop="34062" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.308" acc_prob="0.973">
            <gDNA_intron_boundary i_start="34063" i_stop="35617" i_length="1555"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35618" e_stop="35685" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35686" i_stop="35763" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35764" e_stop="35929" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35930" i_stop="36031" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36032" e_stop="36094" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36095" i_stop="36443" i_length="349"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36444" e_stop="36539" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36540" i_stop="36805" i_length="266"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36806" e_stop="36973" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36974" i_stop="39135" i_length="2162"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39136" e_stop="39306" e_length="171"/>
          </exon>
          <intron i_serial="7" don_prob="0.887" acc_prob="0.982">
            <gDNA_intron_boundary i_start="39307" i_stop="40251" i_length="945"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40252" e_stop="40401" e_length="150"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.967">
            <gDNA_intron_boundary i_start="40402" i_stop="40466" i_length="65"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="40467" e_stop="40598" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.943">
            <gDNA_intron_boundary i_start="40599" i_stop="41006" i_length="408"/>
          </intron>
          <exon e_serial="10" e_score="0.986">
            <gDNA_exon_boundary e_start="41007" e_stop="41362" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33942" stop="34062"/>
              <exon start="35618" stop="35685"/>
              <exon start="35764" stop="35929"/>
              <exon start="36032" stop="36094"/>
              <exon start="36444" stop="36539"/>
              <exon start="36806" stop="36973"/>
              <exon start="39136" stop="39306"/>
              <exon start="40252" stop="40401"/>
              <exon start="40467" stop="40598"/>
              <exon start="41007" stop="41362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG : ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG : CTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG : GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG : GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG : GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG : GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG : GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG : GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG : GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAATGTCCA</gDNA_template>
            <first_frame> *  K  *  P  E  R  A  T  S  *  P  H  Q  R  *  D  C  Y  W  N  N  L  S  *  R  G  R  Y  A  L  S  H  L  D  L  L  V  S  *  I   : D  G  *  P  S  L  L  W  P  R  A  C  R  T  W  D  S  K  F  L  F  V  *  :  L  G  A  K  H  I  *  G  S  *  R  L  W  M  H  Q  G  Y  R  G  Q  C  *  T  T  D  V  G  L  N  S  I  S  V  L  S  E  V  H  H  C  I  N  V  W  L  K  N  R  I  *  Y  I  T  *   : G  F  P  T  N  T  V  W  C  F  *  I  *  *  A  P  G  E  A  *  *   : G  K  L  Q  *  K  I  S  *  E  S  S  I  C  C  R  P  Q  S  P  G  *  S  S  C  E  S  K  S  A  L  S   : G  S  F  F  P  I  R  V  A  N  Q  R  L  C  H  R  L  K  V  C  A  G  S  K  Y  T  C  Y  P  G  Y  D  R  Y  L  C  Q  Q  W  M  A  L  K  Y  H  Y  L  Y  A  S  V  A  N  G  H  A   : G  L  V  V  *  *  R  L  S  S  L  D  V  T  M  H  D  *  *  S  T  Q  L  I  A  K  K  R  N  C  *  Y  P  A  A  V  G  L  P  F  R  I  I  T  G  Y  H  W  K  F  S  C  L  E  T  V  S   : G  Y  A  A  F  P  S  D  S  S  S  T  *  N  S  A  K  G  I  *  W  W  K  D  F  N  L  E  H  *  I  G  R  C  K  Y  S  A  K  N  S  K  S  F  Y  P  T  I  S  K   : G  K  R  *  S  L  V  V  S  P  L  *  Y  F  R  K  *  T  V  C  S  E  E  S  V  F  L  W  S  F  A  D  T  H  G  F  A  I  H  S  D  Q  F  P   : G  D  K  A  H  S  S  I  G  F  L  H  W  V  *  T  R  T  L  Y  *  R  I  D  L  I  W  K  K  L  Y  Q  L  Q  I  V  M  Q  C  S  Q  N  Q  D  L  T  L  Y  S  T  K  A  H  F  F  T  I  S  Y  R  S  C  V  T  V  Y  I  C  N  E  I  L  L  C  N  F  L  E  *  L  I  G  I  L  H  F  S  L  S  C  R  S  N  C  I  Y  A  S  G  Y  C  *  K  S  Y  T  H  T  L  I  N  I  E  L  S  I  Q  C  P </first_frame>
            <second_frame>  E  S  S  L  R  E  Q  L  H  D  H  I  N  A  E  I  V  T  G  T  I  S  H  K  E  D  A  M  H  Y  L  T  W  T  Y  L  F  R  R  L  :  M  V  N  P  A  Y  Y  G  L  E  H  A  E  P  G  I  L  N  S  Y  L  S  S :   L  V  Q  S  T  F  E  D  L  E  D  S  G  C  I  K  V  T  E  D  S  V  E  P  L  M  L  G  S  I  A  S  Q  Y  Y  L  K  Y  T  T  V  S  M  F  G  S  K  I  G  S  D  T  S  L  E  :  V  F  L  Q  I  L  S  G  A  S  E  Y  D  E  L  P  V  R  H  N  E  :  E  N  Y  N  E  K  L  A  E  K  V  P  Y  A  V  D  H  N  R  L  D  D  P  H  V  K  A  N  L  L  F  Q  :  A  H  F  S  Q  S  E  L  P  I  S  D  Y  V  T  D  L  K  S  V  L  D  Q  S  I  R  V  I  Q  A  M  I  D  I  C  A  N  S  G  W  L  S  S  T  I  T  C  M  H  L  L  Q  M  V  M  Q  :  G  L  W  F  D  R  D  S  P  L  W  M  L  P  C  M  T  D  D  L  L  N  S  L  Q  K  K  G  I  A  S  I  Q  Q  L  L  D  C  P  S  E  S  L  R  A  I  T  G  S  S  A  A  S  K  L  Y  Q  :  D  M  R  H  F  P  R  I  Q  V  R  L  K  I  Q  P  K  E  S  N  G  G  K  I  L  T  L  N  I  R  L  E  D  A  N  T  Q  R  R  T  A  K  A  F  I  P  R  Y  P  K  :  V  K  D  E  A  W  W  L  V  L  C  N  T  S  A  S  E  L  Y  A  L  K  R  V  S  F  S  G  R  L  Q  T  H  M  D  L  P  S  T  L  T  N  F  Q  :  G  I  K  L  I  L  V  S  D  S  Y  I  G  F  E  Q  E  H  S  I  E  G  L  T  *  S  G  R  N  Y  T  N  S  R  L  *  C  N  A  P  K  I  R  I  *  L  C  I  A  Q  R  L  T  F  S  Q  S  V  I  E  V  V  L  R  S  T  F  V  M  R  Y  C  F  V  I  F  L  S  N  *  S  A  S  F  I  F  L  C  H  V  D  P  I  V  Y  M  H  Q  G  T  V  E  S  L  I  H  T  P  *  S  I  *  S  F  P  F  N  V   </second_frame>
            <third_frame>   K  V  A  *  E  S  N  F  M  T  T  S  T  L  R  L  L  L  E  Q  S  L  I  K  R  T  L  C  I  I  S  L  G  P  T  C  F  V  D  * :   W  L  T  Q  L  T  M  A  *  S  M  Q  N  L  G  F  *  I  L  I  C  L   : A  W  C  K  A  H  L  R  I  L  K  T  L  D  A  S  R  L  P  R  T  V  L  N  H  *  C  W  A  Q  *  H  L  S  I  I  *  S  T  P  L  Y  Q  C  L  A  Q  K  *  D  L  I  H  H  L  R :   F  S  Y  K  Y  C  L  V  L  L  N  M  M  S  S  R  *  G  I  M  R :   K  T  T  M  K  N  *  L  R  K  F  H  M  L  S  T  T  I  A  W  M  I  L  M  *  K  Q  I  C  S  F  R :   L  I  F  P  N  Q  S  C  Q  S  A  I  M  S  Q  T  *  S  L  C  W  I  K  V  Y  V  L  S  R  L  *  *  I  F  V  P  T  V  D  G  S  Q  V  P  L  P  V  C  I  C  C  K  W  S  C  R :   A  C  G  L  I  E  T  L  L  F  G  C  Y  H  A  *  L  M  I  Y  S  T  H  C  K  K  K  E  L  L  V  S  S  S  C  W  I  A  L  Q  N  H  Y  G  L  S  L  E  V  Q  L  P  R  N  C  I  R :   I  C  G  I  S  L  G  F  K  F  D  L  K  F  S  Q  R  N  L  M  V  E  R  F  *  P  *  T  L  D  W  K  M  Q  I  L  S  E  E  Q  Q  K  L  L  S  H  D  I  Q  R :   *  K  M  K  L  G  G  *  S  F  V  I  L  P  Q  V  N  C  M  L  *  R  E  C  L  S  L  V  V  C  R  H  T  W  I  C  H  P  L  *  P  I  S  R :   G  *  S  S  F  *  Y  R  I  L  T  L  G  L  N  K  N  T  L  L  K  D  *  L  N  L  E  E  T  I  P  T  P  D  C  N  A  M  L  P  K  S  G  F  D  F  V  *  H  K  G  S  L  F  H  N  Q  L  *  K  L  C  Y  G  L  H  L  *  *  D  I  A  L  *  F  S  *  V  I  D  R  H  P  S  F  F  F  V  M  *  I  Q  L  Y  I  C  I  R  V  L  L  K  V  L  Y  T  H  P  N  Q  Y  R  A  F  H  S  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33943" stop="34062"/>
                    <exon start="35618" stop="35685"/>
                    <exon start="35764" stop="35929"/>
                    <exon start="36032" stop="36094"/>
                    <exon start="36444" stop="36539"/>
                    <exon start="36806" stop="36973"/>
                    <exon start="39136" stop="39306"/>
                    <exon start="40252" stop="40401"/>
                    <exon start="40467" stop="40598"/>
                    <exon start="41007" stop="41081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESSLREQLHDHINAEIVTGTISHKEDAMHYLTWTYLFRRLMVNPAYYGLEHAEPGILNSYLSSLVQSTFEDLEDSGCIKVTEDSVEPLMLGSIASQYYLKYTTVSMFGSKIGSDTSLEVFLQILSGASEYDELPVRHNEENYNEKLAEKVPYAVDHNRLDDPHVKANLLFQAHFSQSELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSTITCMHLLQMVMQGLWFDRDSPLWMLPCMTDDLLNSLQKKGIASIQQLLDCPSESLRAITGSSAASKLYQDMRHFPRIQVRLKIQPKESNGGKILTLNIRLEDANTQRRTAKAFIPRYPKVKDEAWWLVLCNTSASELYALKRVSFSGRLQTHMDLPSTLTNFQGIKLILVSDSYIGFEQEHSIEGLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="76455" PGL_stop="79101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76455" e_stop="76629"/>
            <exon e_start="76957" e_stop="77057"/>
            <exon e_start="78756" e_stop="79101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.779" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.990"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="76455" e_stop="76629" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.779">
            <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="76957" e_stop="77057" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="78756" e_stop="79101" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76455" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8611-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTCATTTTCGGAGCAGAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA : TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT : GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</gDNA_template>
            <first_frame> Q  I  H  F  R  S  R  N  Y  S  S  H  V  V  T  S  E  R  S  T  A  T  V  D  G  K  A  V  Q  A  F  A  G  R  S  T  R  S  S  Y  R  L  L  R  L  H  S  R  H  L  R  R  L  W  C  H  V  *   : I  Q  D  L  L  V  A  C  Y  Y  I  Q  C  S  I  P  C  *  H  E  E  Y  G  K  *  S  *  A  D  L  N  G  H  D  :  V  W  Y  Y  G  S  H  D  K  L  L  G  C  W  S  P  G  K  Q  E  N  L  I  E  L  F  Q  A  Q  T  H  L  *  E  H  C  C  Q  T  C  G  C  C  P  E  I  F  A  L  L  *  C  F  *  A  K  *  S  *  R  L  G  F  W  *  F  E  L  F  L  *  G  Y  S  V  L  S  C  N  C  S  *  Q  K  L  D  N  Y  Y  C  G  D  I  N  V  L  F  V  N  S  G  F  S  I  L  P  T  S  T  I  F  Q  F  M  S  </first_frame>
            <second_frame>  K  F  I  F  G  A  E  T  T  A  A  M  S  S  P  A  N  D  P  R  Q  P  S  T  A  K  P  Y  K  P  S  P  V  A  P  Q  D  L  P  I  D  Y  S  G  F  I  A  V  I  C  G  V  F  G  A  M  F  R  :  Y  K  I  C  S  W  L  A  I  I  F  S  A  Q  S  L  A  N  M  R  N  M  E  N  D  L  K  Q  I  S  M  A  M  M :   F  G  I  M  G  L  M  T  N  Y  L  G  V  G  P  R  G  S  K  K  I  *  S  N  C  F  R  H  K  L  I  Y  K  N  I  A  V  K  H  V  D  V  V  L  K  Y  L  H  C  Y  D  V  S  E  L  N  E  V  K  D  *  V  F  G  S  L  S  S  F  Y  R  A  I  Q  F  *  V  V  I  A  L  S  K  N  *  T  I  I  I  V  V  I  L  T  F  C  S  *  I  Q  V  S  L  S  F  Q  L  P  L  Y  F  N  L  C  L </second_frame>
            <third_frame>   N  S  F  S  E  Q  K  L  Q  Q  P  C  R  H  Q  R  T  I  H  G  N  R  R  R  Q  S  R  T  S  L  R  R  S  L  H  K  I  F  L  *  I  T  P  A  S  *  P  S  S  A  A  S  L  V  P  C  L  D :   T  R  F  A  R  G  L  L  L  Y  S  V  L  N  P  L  L  T  *  G  I  W  K  M  I  L  S  R  S  Q  W  P  *   : C  L  V  L  W  V  S  *  Q  T  T  W  V  L  V  P  G  E  A  R  K  F  D  R  I  V  S  G  T  N  S  F  I  R  T  L  L  S  N  M  W  M  L  S  *  N  I  C  T  V  M  M  F  L  S  *  M  K  L  K  I  R  F  L  V  V  *  A  L  F  I  G  L  F  S  S  K  L  *  L  L  L  A  K  T  R  Q  L  L  L  W  *  Y  *  R  S  V  R  E  F  R  F  L  Y  P  S  N  F  H  Y  I  S  I  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76456" stop="76629"/>
                    <exon start="76957" stop="77057"/>
                    <exon start="78756" stop="78822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFIFGAETTAAMSSPANDPRQPSTAKPYKPSPVAPQDLPIDYSGFIAVICGVFGAMFRYKICSWLAIIFSAQSLANMRNMENDLKQISMAMMFGIMGLMTNYLGVGPRGSKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 4048 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 7056 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3528 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 15 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:44:46
-->
