<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:41:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561523" ref_strand="+" ref_description="SGN-E561523 [16499]">
      <seq>aatccacggcaacgaatcagcgatacgttcaattatataattcaatattgggtataagttttctgcaaaacagaaaaagaggagtgaggaagaaggagacagtctccatgggttcaccaagtgttgtcccttatatctttctgctacttcttgttggatgctcggccagacctctctacccacttcctggcaagaagaaatgataggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5103" stop="8109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5403" g_stop="5525" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5526" i_stop="7719" i_length="2194">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7720" g_stop="7809" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="211" r_length="91" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E561523" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5403" e_stop="5525"/>
          <exon e_start="7720" e_stop="7809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCACGGCAACGAATCAGCGATATGATCAATTATATAATTCATTACTGGCAATAAATTTTCTGCAAAAAACAGAAAAAAGAGGAGTGAGGAAGAAGGAGACAGTCACCATGGATTCCCCAAGTAAGTATTACAATCCCCAGTTTTGTTGTTTCTGTGTTTCGTTATGTTATTTGTTGTATTTGGTGTTGGAATGAAATAGAGCAGGGTGGATTTAGTTATAATGCCCTCTATTTCGTATTATTCTACGAGTTAGAGGTAAGGTCTGTGTATATTCTAATCTCACCGACCAAAACAATGGGATTATACGGTATGTTGTTGTTGTTATTATGGTTTACCTTAGCTAGTTTGGGATTATGTTTGTATTCTAGGAATGTAATTTTTTCAATATTGTCACTTGGTTCTTGAAAATTGTGTATTTTAGCTTAGATTGTGTATATCTACAACCCCTTTATGTATATAGCTGCTGGATTAAGTGGAATCATTTGAAAGATTGTTTTTTTTCTGGGTTTTTAACTTTTAAGTTCTCTATGGGCTCAAATCTTTCAAGTAATGTACAGTGACAATTAGTTATTGAAATCTGCACTCAGATTATATGTCTACTCATAATTTACTTCGAGTAAATGGGAAGGTTGAACAGTTTTTCAACTGTGTGCCTTGTCTGGTGCTCTGACAATTACAAATTCTTGTCAAGGCATTTCCCAGTAAGCACGCATTATATGCAGTGTCTTTGCATTTATTTGATATCTAATTAACTTGTGGTGATACCATAACTTTATATATTATGGGGAGTAGGTGGTGCTGATACAAGAAAATAAAGAGATAAGTGTGTTAAAATCTACTCGTCTCATTAATACATGACAGATTTACACCTTTAAATTGGTTGGTAACTCTTTATGTGAGAAATTGTATGCAACTTTAATATTTTACATGCTAAGTTGGGGTTGCTAAATTCAGTTTCTGTAGGTCAATCTGGCCCCATAAAACTTCAGAGAGGTTTAGCGTTGGTAGTAGTAATTGTTCAACTCTCAATGGTTTTGTGGGCTCTCTGCGTCCCCATTAATATTATGTGATGTTAGGTGAATTTGTAGTCTCCTTTGTTCCCAACCATAGAATCCCAAATGATATTAACTGGAGTGGAAACGTGAGCGTTGAACTTATCTTTCTAGTTCAAAGTGAATGTCATGGCGTGACTTGACACAATTTCTTAAATTAAATTGGGAAGAAAAGTAAGAATAGTTTTTGAATTTGGAAAATCCTGCTTAATTTTTTCGAGGTATCATATTCAATGAGGCGTGAAATGTTAAAACACTTTGTTTCCAAATATAGGATATAAACATGGATGTTGAGGATTCATATAGTTGAACCCCACTGATTTTGAGTTCAGCATTGTTGTTGTTGTTGTAGATTATAGAATTTACATTTAGGATCAGCTGAAAAAAGAATCTTAGCTCCAAATAAAAAACGGAGCAGTCTTAGTTACTGTTCATTTAGATAGAATTGAAAGTTCAGCGAGATGTCACTTATTTCAATTGCTATGATGTGTAGTATTGTGCATCATATAAAGATGGTTCATAATCTAAGTCGGGTTCAAATTAGCTCAATCTAATTAGTTAACCAAATATCACAGAAGGAATATAAAGGATTACTGTAGGCAAGCCAACTAGCGTGTGATTGAAAGCAGTTGATTCATAGAATTAGTGAACCAAATTATGGCCACCAAAAAAAATCCTATTATAGATTAAATCTTATTTCCCATTATTGATTTTCAGAATAAGAATTGAATGTATATCTAGTCTAGTACTTTGTCCAAAGTTCATAAGGGTATCCCATATTAAACTAGGATGTAAACATTGGATTGAACTTGTTATGATATATTCCGATATCCTGTGTCGCAAGTACTATCCAGCTATGCTTTGGCTGAACAAATCGTTGGCTGTATATTCTTCGCACATTTATCATGCTGCCTGTTGCTAAACATGTGTATTGACCATAACTATCGACTAATCCTAATTTAGAACTGAGACACAGTGGTTCTGGTGTGAGTATTGCTTGTTAATTTCCAAAGGTTTTCCTTGTTTTAGATTGAAAGTTAAGATGTTATAACTTTTCTCAAGCTGCAATGAATTGGATTATCAGAATAGATCAATTGATGTCAAGTGCATGCATTCATGTATATTGGTCTCTCCATACATGCACCATTATATATACCATGTTCACGTGTGAAATCATTGGCCGTAGATAGACAAGCATAGGTAACGTTTATAATCATGTGTTCATATATAGAATCTTACATCTTTCTCAATGTACTTTACAGGTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGC-AGAAGAAATGATAGGAATA</genome_strand>
        <mrna_strand>AATCCACGGCAACGAATCAGCGATACGTTCAATTATATAATTCAATATTGGGTATAAGTTTTCTGC--AAAACAG-AAAAAGAGGAGTGAGGAAGAAGGAGACAGTCTCCATGGGTTCACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTCCCTTATATCTTTCTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAAGAAGAAATGATAGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306280" ref_strand="+" ref_description="SGN-E306280 [cLEX-13-G15]">
      <seq>aggagtgaggaagaaggagacagtcaccatggattccccaagtgttatcccttatatctttttgctacttcttgttggatgctcggccagacctctctacccacttcctggcagaagaaatgataggaataaacagcctttacaaacatttcgagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagacggcgctcttatatgtttccatgatgtcatacttgatgataccaactgatatagcaaatcacaaggaatttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagcttctgcgtgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5185" stop="9183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5485" g_stop="5525" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5526" i_stop="7719" i_length="2194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7720" g_stop="7898" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="220" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="405" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="480" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8828" g_stop="8883" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="536" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E306280" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5485" e_stop="5525"/>
          <exon e_start="7720" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTGAGGAAGAAGGAGACAGTCACCATGGATTCCCCAAGTAAGTATTACAATCCCCAGTTTTGTTGTTTCTGTGTTTCGTTATGTTATTTGTTGTATTTGGTGTTGGAATGAAATAGAGCAGGGTGGATTTAGTTATAATGCCCTCTATTTCGTATTATTCTACGAGTTAGAGGTAAGGTCTGTGTATATTCTAATCTCACCGACCAAAACAATGGGATTATACGGTATGTTGTTGTTGTTATTATGGTTTACCTTAGCTAGTTTGGGATTATGTTTGTATTCTAGGAATGTAATTTTTTCAATATTGTCACTTGGTTCTTGAAAATTGTGTATTTTAGCTTAGATTGTGTATATCTACAACCCCTTTATGTATATAGCTGCTGGATTAAGTGGAATCATTTGAAAGATTGTTTTTTTTCTGGGTTTTTAACTTTTAAGTTCTCTATGGGCTCAAATCTTTCAAGTAATGTACAGTGACAATTAGTTATTGAAATCTGCACTCAGATTATATGTCTACTCATAATTTACTTCGAGTAAATGGGAAGGTTGAACAGTTTTTCAACTGTGTGCCTTGTCTGGTGCTCTGACAATTACAAATTCTTGTCAAGGCATTTCCCAGTAAGCACGCATTATATGCAGTGTCTTTGCATTTATTTGATATCTAATTAACTTGTGGTGATACCATAACTTTATATATTATGGGGAGTAGGTGGTGCTGATACAAGAAAATAAAGAGATAAGTGTGTTAAAATCTACTCGTCTCATTAATACATGACAGATTTACACCTTTAAATTGGTTGGTAACTCTTTATGTGAGAAATTGTATGCAACTTTAATATTTTACATGCTAAGTTGGGGTTGCTAAATTCAGTTTCTGTAGGTCAATCTGGCCCCATAAAACTTCAGAGAGGTTTAGCGTTGGTAGTAGTAATTGTTCAACTCTCAATGGTTTTGTGGGCTCTCTGCGTCCCCATTAATATTATGTGATGTTAGGTGAATTTGTAGTCTCCTTTGTTCCCAACCATAGAATCCCAAATGATATTAACTGGAGTGGAAACGTGAGCGTTGAACTTATCTTTCTAGTTCAAAGTGAATGTCATGGCGTGACTTGACACAATTTCTTAAATTAAATTGGGAAGAAAAGTAAGAATAGTTTTTGAATTTGGAAAATCCTGCTTAATTTTTTCGAGGTATCATATTCAATGAGGCGTGAAATGTTAAAACACTTTGTTTCCAAATATAGGATATAAACATGGATGTTGAGGATTCATATAGTTGAACCCCACTGATTTTGAGTTCAGCATTGTTGTTGTTGTTGTAGATTATAGAATTTACATTTAGGATCAGCTGAAAAAAGAATCTTAGCTCCAAATAAAAAACGGAGCAGTCTTAGTTACTGTTCATTTAGATAGAATTGAAAGTTCAGCGAGATGTCACTTATTTCAATTGCTATGATGTGTAGTATTGTGCATCATATAAAGATGGTTCATAATCTAAGTCGGGTTCAAATTAGCTCAATCTAATTAGTTAACCAAATATCACAGAAGGAATATAAAGGATTACTGTAGGCAAGCCAACTAGCGTGTGATTGAAAGCAGTTGATTCATAGAATTAGTGAACCAAATTATGGCCACCAAAAAAAATCCTATTATAGATTAAATCTTATTTCCCATTATTGATTTTCAGAATAAGAATTGAATGTATATCTAGTCTAGTACTTTGTCCAAAGTTCATAAGGGTATCCCATATTAAACTAGGATGTAAACATTGGATTGAACTTGTTATGATATATTCCGATATCCTGTGTCGCAAGTACTATCCAGCTATGCTTTGGCTGAACAAATCGTTGGCTGTATATTCTTCGCACATTTATCATGCTGCCTGTTGCTAAACATGTGTATTGACCATAACTATCGACTAATCCTAATTTAGAACTGAGACACAGTGGTTCTGGTGTGAGTATTGCTTGTTAATTTCCAAAGGTTTTCCTTGTTTTAGATTGAAAGTTAAGATGTTATAACTTTTCTCAAGCTGCAATGAATTGGATTATCAGAATAGATCAATTGATGTCAAGTGCATGCATTCATGTATATTGGTCTCTCCATACATGCACCATTATATATACCATGTTCACGTGTGAAATCATTGGCCGTAGATAGACAAGCATAGGTAACGTTTATAATCATGTGTTCATATATAGAATCTTACATCTTTCTCAATGTACTTTACAGGTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATA-CAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCAT</genome_strand>
        <mrna_strand>AGGAGTGAGGAAGAAGGAGACAGTCACCATGGATTCCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACCAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211193" ref_strand="+" ref_description="SGN-E211193 [cLEC-70-D5]">
      <seq>gagtgaggaagaaggagacagtcaccatggattccccaagtgttatcccttatatctttttgctacttcttgttggatgctcggccagacctctctacccacttcctggcagaagaaatgataggaataaacagcctttacaaacatttcgagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagacggcgctcttatatgtttccatgatgtcatacttgatgatacaactgatatagcaaatcacaaggaatttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagcttctgcgtgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5187" stop="9178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5487" g_stop="5525" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5526" i_stop="7719" i_length="2194">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7720" g_stop="7898" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="218" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="402" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="477" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8828" g_stop="8878" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="528" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E211193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5487" e_stop="5525"/>
          <exon e_start="7720" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAGGAAGAAGGAGACAGTCACCATGGATTCCCCAAGTAAGTATTACAATCCCCAGTTTTGTTGTTTCTGTGTTTCGTTATGTTATTTGTTGTATTTGGTGTTGGAATGAAATAGAGCAGGGTGGATTTAGTTATAATGCCCTCTATTTCGTATTATTCTACGAGTTAGAGGTAAGGTCTGTGTATATTCTAATCTCACCGACCAAAACAATGGGATTATACGGTATGTTGTTGTTGTTATTATGGTTTACCTTAGCTAGTTTGGGATTATGTTTGTATTCTAGGAATGTAATTTTTTCAATATTGTCACTTGGTTCTTGAAAATTGTGTATTTTAGCTTAGATTGTGTATATCTACAACCCCTTTATGTATATAGCTGCTGGATTAAGTGGAATCATTTGAAAGATTGTTTTTTTTCTGGGTTTTTAACTTTTAAGTTCTCTATGGGCTCAAATCTTTCAAGTAATGTACAGTGACAATTAGTTATTGAAATCTGCACTCAGATTATATGTCTACTCATAATTTACTTCGAGTAAATGGGAAGGTTGAACAGTTTTTCAACTGTGTGCCTTGTCTGGTGCTCTGACAATTACAAATTCTTGTCAAGGCATTTCCCAGTAAGCACGCATTATATGCAGTGTCTTTGCATTTATTTGATATCTAATTAACTTGTGGTGATACCATAACTTTATATATTATGGGGAGTAGGTGGTGCTGATACAAGAAAATAAAGAGATAAGTGTGTTAAAATCTACTCGTCTCATTAATACATGACAGATTTACACCTTTAAATTGGTTGGTAACTCTTTATGTGAGAAATTGTATGCAACTTTAATATTTTACATGCTAAGTTGGGGTTGCTAAATTCAGTTTCTGTAGGTCAATCTGGCCCCATAAAACTTCAGAGAGGTTTAGCGTTGGTAGTAGTAATTGTTCAACTCTCAATGGTTTTGTGGGCTCTCTGCGTCCCCATTAATATTATGTGATGTTAGGTGAATTTGTAGTCTCCTTTGTTCCCAACCATAGAATCCCAAATGATATTAACTGGAGTGGAAACGTGAGCGTTGAACTTATCTTTCTAGTTCAAAGTGAATGTCATGGCGTGACTTGACACAATTTCTTAAATTAAATTGGGAAGAAAAGTAAGAATAGTTTTTGAATTTGGAAAATCCTGCTTAATTTTTTCGAGGTATCATATTCAATGAGGCGTGAAATGTTAAAACACTTTGTTTCCAAATATAGGATATAAACATGGATGTTGAGGATTCATATAGTTGAACCCCACTGATTTTGAGTTCAGCATTGTTGTTGTTGTTGTAGATTATAGAATTTACATTTAGGATCAGCTGAAAAAAGAATCTTAGCTCCAAATAAAAAACGGAGCAGTCTTAGTTACTGTTCATTTAGATAGAATTGAAAGTTCAGCGAGATGTCACTTATTTCAATTGCTATGATGTGTAGTATTGTGCATCATATAAAGATGGTTCATAATCTAAGTCGGGTTCAAATTAGCTCAATCTAATTAGTTAACCAAATATCACAGAAGGAATATAAAGGATTACTGTAGGCAAGCCAACTAGCGTGTGATTGAAAGCAGTTGATTCATAGAATTAGTGAACCAAATTATGGCCACCAAAAAAAATCCTATTATAGATTAAATCTTATTTCCCATTATTGATTTTCAGAATAAGAATTGAATGTATATCTAGTCTAGTACTTTGTCCAAAGTTCATAAGGGTATCCCATATTAAACTAGGATGTAAACATTGGATTGAACTTGTTATGATATATTCCGATATCCTGTGTCGCAAGTACTATCCAGCTATGCTTTGGCTGAACAAATCGTTGGCTGTATATTCTTCGCACATTTATCATGCTGCCTGTTGCTAAACATGTGTATTGACCATAACTATCGACTAATCCTAATTTAGAACTGAGACACAGTGGTTCTGGTGTGAGTATTGCTTGTTAATTTCCAAAGGTTTTCCTTGTTTTAGATTGAAAGTTAAGATGTTATAACTTTTCTCAAGCTGCAATGAATTGGATTATCAGAATAGATCAATTGATGTCAAGTGCATGCATTCATGTATATTGGTCTCTCCATACATGCACCATTATATATACCATGTTCACGTGTGAAATCATTGGCCGTAGATAGACAAGCATAGGTAACGTTTATAATCATGTGTTCATATATAGAATCTTACATCTTTCTCAATGTACTTTACAGGTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATG</genome_strand>
        <mrna_strand>GAGTGAGGAAGAAGGAGACAGTCACCATGGATTCCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210984" ref_strand="+" ref_description="SGN-E210984 [cLEC-69-F18]">
      <seq>gaggaagaaggagacagtcaccatggattccccaagtgttatcccttatatctttttgctacttcttgttggatgctcggccagacctctctacccacttcctggcagaagaaatgataggaataaacagcctttacaaacatttcgagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagacggcgctcttatatgtttccatgatgtcatacttgatgatacaactgatatagcaaatcacaaggaatttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagcttctgcgtgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatatccagagataaaaaatccagtccttatcaaccaacacgtcaaatggccaggtggtaagaaatttgaggacaagtttgttgagacactgaagaagtatggatacaaaggttcatatatgtcgaaagcatggttaaagcagcctgcattcattcaatcttttgcgccgacgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5191" stop="9507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5491" g_stop="5525" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5526" i_stop="7719" i_length="2194">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7720" g_stop="7898" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="214" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="398" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="473" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="583" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9071" g_stop="9207" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="720" r_length="137" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E210984" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5491" e_stop="5525"/>
          <exon e_start="7720" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
          <exon e_start="9071" e_stop="9207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGAAGGAGACAGTCACCATGGATTCCCCAAGTAAGTATTACAATCCCCAGTTTTGTTGTTTCTGTGTTTCGTTATGTTATTTGTTGTATTTGGTGTTGGAATGAAATAGAGCAGGGTGGATTTAGTTATAATGCCCTCTATTTCGTATTATTCTACGAGTTAGAGGTAAGGTCTGTGTATATTCTAATCTCACCGACCAAAACAATGGGATTATACGGTATGTTGTTGTTGTTATTATGGTTTACCTTAGCTAGTTTGGGATTATGTTTGTATTCTAGGAATGTAATTTTTTCAATATTGTCACTTGGTTCTTGAAAATTGTGTATTTTAGCTTAGATTGTGTATATCTACAACCCCTTTATGTATATAGCTGCTGGATTAAGTGGAATCATTTGAAAGATTGTTTTTTTTCTGGGTTTTTAACTTTTAAGTTCTCTATGGGCTCAAATCTTTCAAGTAATGTACAGTGACAATTAGTTATTGAAATCTGCACTCAGATTATATGTCTACTCATAATTTACTTCGAGTAAATGGGAAGGTTGAACAGTTTTTCAACTGTGTGCCTTGTCTGGTGCTCTGACAATTACAAATTCTTGTCAAGGCATTTCCCAGTAAGCACGCATTATATGCAGTGTCTTTGCATTTATTTGATATCTAATTAACTTGTGGTGATACCATAACTTTATATATTATGGGGAGTAGGTGGTGCTGATACAAGAAAATAAAGAGATAAGTGTGTTAAAATCTACTCGTCTCATTAATACATGACAGATTTACACCTTTAAATTGGTTGGTAACTCTTTATGTGAGAAATTGTATGCAACTTTAATATTTTACATGCTAAGTTGGGGTTGCTAAATTCAGTTTCTGTAGGTCAATCTGGCCCCATAAAACTTCAGAGAGGTTTAGCGTTGGTAGTAGTAATTGTTCAACTCTCAATGGTTTTGTGGGCTCTCTGCGTCCCCATTAATATTATGTGATGTTAGGTGAATTTGTAGTCTCCTTTGTTCCCAACCATAGAATCCCAAATGATATTAACTGGAGTGGAAACGTGAGCGTTGAACTTATCTTTCTAGTTCAAAGTGAATGTCATGGCGTGACTTGACACAATTTCTTAAATTAAATTGGGAAGAAAAGTAAGAATAGTTTTTGAATTTGGAAAATCCTGCTTAATTTTTTCGAGGTATCATATTCAATGAGGCGTGAAATGTTAAAACACTTTGTTTCCAAATATAGGATATAAACATGGATGTTGAGGATTCATATAGTTGAACCCCACTGATTTTGAGTTCAGCATTGTTGTTGTTGTTGTAGATTATAGAATTTACATTTAGGATCAGCTGAAAAAAGAATCTTAGCTCCAAATAAAAAACGGAGCAGTCTTAGTTACTGTTCATTTAGATAGAATTGAAAGTTCAGCGAGATGTCACTTATTTCAATTGCTATGATGTGTAGTATTGTGCATCATATAAAGATGGTTCATAATCTAAGTCGGGTTCAAATTAGCTCAATCTAATTAGTTAACCAAATATCACAGAAGGAATATAAAGGATTACTGTAGGCAAGCCAACTAGCGTGTGATTGAAAGCAGTTGATTCATAGAATTAGTGAACCAAATTATGGCCACCAAAAAAAATCCTATTATAGATTAAATCTTATTTCCCATTATTGATTTTCAGAATAAGAATTGAATGTATATCTAGTCTAGTACTTTGTCCAAAGTTCATAAGGGTATCCCATATTAAACTAGGATGTAAACATTGGATTGAACTTGTTATGATATATTCCGATATCCTGTGTCGCAAGTACTATCCAGCTATGCTTTGGCTGAACAAATCGTTGGCTGTATATTCTTCGCACATTTATCATGCTGCCTGTTGCTAAACATGTGTATTGACCATAACTATCGACTAATCCTAATTTAGAACTGAGACACAGTGGTTCTGGTGTGAGTATTGCTTGTTAATTTCCAAAGGTTTTCCTTGTTTTAGATTGAAAGTTAAGATGTTATAACTTTTCTCAAGCTGCAATGAATTGGATTATCAGAATAGATCAATTGATGTCAAGTGCATGCATTCATGTATATTGGTCTCTCCATACATGCACCATTATATATACCATGTTCACGTGTGAAATCATTGGCCGTAGATAGACAAGCATAGGTAACGTTTATAATCATGTGTTCATATATAGAATCTTACATCTTTCTCAATGTACTTTACAGGTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACT</genome_strand>
        <mrna_strand>GAGGAAGAAGGAGACAGTCACCATGGATTCCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACAC.....................................................................................................................................GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAAGCATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483943" ref_strand="+" ref_description="SGN-E483943 [cSTE-11-D1]">
      <seq>ggaagaaggagacagtctccatgggttcaccaagtgttgtcccttatatctttctgctacttcttgttggatgctcggccagacctctctacccacttcctggcagaagaaatgataggaataaacagcctttacaaacatttcgagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagatggcgctcttatatgtttccatgatgtcatacttgatgatatgactgatatagcaaatcacaaggagtttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagcttctgcgtgttaagcagagatatcctttcagagatcagcaatataatggagaattttctattattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5193" stop="9200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5493" g_stop="5525" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5526" i_stop="7719" i_length="2194">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7720" g_stop="7898" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="212" r_length="179" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="396" r_length="184" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="471" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8828" g_stop="8900" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="544" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E483943" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5493" e_stop="5525"/>
          <exon e_start="7720" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAGGAGACAGTCACCATGGATTCCCCAAGTAAGTATTACAATCCCCAGTTTTGTTGTTTCTGTGTTTCGTTATGTTATTTGTTGTATTTGGTGTTGGAATGAAATAGAGCAGGGTGGATTTAGTTATAATGCCCTCTATTTCGTATTATTCTACGAGTTAGAGGTAAGGTCTGTGTATATTCTAATCTCACCGACCAAAACAATGGGATTATACGGTATGTTGTTGTTGTTATTATGGTTTACCTTAGCTAGTTTGGGATTATGTTTGTATTCTAGGAATGTAATTTTTTCAATATTGTCACTTGGTTCTTGAAAATTGTGTATTTTAGCTTAGATTGTGTATATCTACAACCCCTTTATGTATATAGCTGCTGGATTAAGTGGAATCATTTGAAAGATTGTTTTTTTTCTGGGTTTTTAACTTTTAAGTTCTCTATGGGCTCAAATCTTTCAAGTAATGTACAGTGACAATTAGTTATTGAAATCTGCACTCAGATTATATGTCTACTCATAATTTACTTCGAGTAAATGGGAAGGTTGAACAGTTTTTCAACTGTGTGCCTTGTCTGGTGCTCTGACAATTACAAATTCTTGTCAAGGCATTTCCCAGTAAGCACGCATTATATGCAGTGTCTTTGCATTTATTTGATATCTAATTAACTTGTGGTGATACCATAACTTTATATATTATGGGGAGTAGGTGGTGCTGATACAAGAAAATAAAGAGATAAGTGTGTTAAAATCTACTCGTCTCATTAATACATGACAGATTTACACCTTTAAATTGGTTGGTAACTCTTTATGTGAGAAATTGTATGCAACTTTAATATTTTACATGCTAAGTTGGGGTTGCTAAATTCAGTTTCTGTAGGTCAATCTGGCCCCATAAAACTTCAGAGAGGTTTAGCGTTGGTAGTAGTAATTGTTCAACTCTCAATGGTTTTGTGGGCTCTCTGCGTCCCCATTAATATTATGTGATGTTAGGTGAATTTGTAGTCTCCTTTGTTCCCAACCATAGAATCCCAAATGATATTAACTGGAGTGGAAACGTGAGCGTTGAACTTATCTTTCTAGTTCAAAGTGAATGTCATGGCGTGACTTGACACAATTTCTTAAATTAAATTGGGAAGAAAAGTAAGAATAGTTTTTGAATTTGGAAAATCCTGCTTAATTTTTTCGAGGTATCATATTCAATGAGGCGTGAAATGTTAAAACACTTTGTTTCCAAATATAGGATATAAACATGGATGTTGAGGATTCATATAGTTGAACCCCACTGATTTTGAGTTCAGCATTGTTGTTGTTGTTGTAGATTATAGAATTTACATTTAGGATCAGCTGAAAAAAGAATCTTAGCTCCAAATAAAAAACGGAGCAGTCTTAGTTACTGTTCATTTAGATAGAATTGAAAGTTCAGCGAGATGTCACTTATTTCAATTGCTATGATGTGTAGTATTGTGCATCATATAAAGATGGTTCATAATCTAAGTCGGGTTCAAATTAGCTCAATCTAATTAGTTAACCAAATATCACAGAAGGAATATAAAGGATTACTGTAGGCAAGCCAACTAGCGTGTGATTGAAAGCAGTTGATTCATAGAATTAGTGAACCAAATTATGGCCACCAAAAAAAATCCTATTATAGATTAAATCTTATTTCCCATTATTGATTTTCAGAATAAGAATTGAATGTATATCTAGTCTAGTACTTTGTCCAAAGTTCATAAGGGTATCCCATATTAAACTAGGATGTAAACATTGGATTGAACTTGTTATGATATATTCCGATATCCTGTGTCGCAAGTACTATCCAGCTATGCTTTGGCTGAACAAATCGTTGGCTGTATATTCTTCGCACATTTATCATGCTGCCTGTTGCTAAACATGTGTATTGACCATAACTATCGACTAATCCTAATTTAGAACTGAGACACAGTGGTTCTGGTGTGAGTATTGCTTGTTAATTTCCAAAGGTTTTCCTTGTTTTAGATTGAAAGTTAAGATGTTATAACTTTTCTCAAGCTGCAATGAATTGGATTATCAGAATAGATCAATTGATGTCAAGTGCATGCATTCATGTATATTGGTCTCTCCATACATGCACCATTATATATACCATGTTCACGTGTGAAATCATTGGCCGTAGATAGACAAGCATAGGTAACGTTTATAATCATGTGTTCATATATAGAATCTTACATCTTTCTCAATGTACTTTACAGGTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATA</genome_strand>
        <mrna_strand>GGAAGAAGGAGACAGTCTCCATGGGTTCACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTCCCTTATATCTTTCTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGATGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATATGACTGATATAGCAAATCACAAGGAGTTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATTATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267444" ref_strand="+" ref_description="SGN-E267444 [cLEI-8-M16]">
      <seq>aaggagacagtcaccatggattccccaagtgttatcccttatatctttttgctacttcttgttggatgctcggccagacctctctacccacttcctggcagaagaaatgataggaataaacagcctttacaaacatttcgagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagacggcgctcttatatgtttccatgatgtcatacttgatgatacaactgatatagcaaatcacaaggaatttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagcttctgcgtgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatatccagagataaaaaatccagtccttatcaaccaacacgtcaaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5198" stop="9241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5498" g_stop="5525" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5526" i_stop="7719" i_length="2194">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7720" g_stop="7898" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="207" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="391" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="466" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="576" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9071" g_stop="9080" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="586" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E267444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5498" e_stop="5525"/>
          <exon e_start="7720" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
          <exon e_start="9071" e_stop="9080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGACAGTCACCATGGATTCCCCAAGTAAGTATTACAATCCCCAGTTTTGTTGTTTCTGTGTTTCGTTATGTTATTTGTTGTATTTGGTGTTGGAATGAAATAGAGCAGGGTGGATTTAGTTATAATGCCCTCTATTTCGTATTATTCTACGAGTTAGAGGTAAGGTCTGTGTATATTCTAATCTCACCGACCAAAACAATGGGATTATACGGTATGTTGTTGTTGTTATTATGGTTTACCTTAGCTAGTTTGGGATTATGTTTGTATTCTAGGAATGTAATTTTTTCAATATTGTCACTTGGTTCTTGAAAATTGTGTATTTTAGCTTAGATTGTGTATATCTACAACCCCTTTATGTATATAGCTGCTGGATTAAGTGGAATCATTTGAAAGATTGTTTTTTTTCTGGGTTTTTAACTTTTAAGTTCTCTATGGGCTCAAATCTTTCAAGTAATGTACAGTGACAATTAGTTATTGAAATCTGCACTCAGATTATATGTCTACTCATAATTTACTTCGAGTAAATGGGAAGGTTGAACAGTTTTTCAACTGTGTGCCTTGTCTGGTGCTCTGACAATTACAAATTCTTGTCAAGGCATTTCCCAGTAAGCACGCATTATATGCAGTGTCTTTGCATTTATTTGATATCTAATTAACTTGTGGTGATACCATAACTTTATATATTATGGGGAGTAGGTGGTGCTGATACAAGAAAATAAAGAGATAAGTGTGTTAAAATCTACTCGTCTCATTAATACATGACAGATTTACACCTTTAAATTGGTTGGTAACTCTTTATGTGAGAAATTGTATGCAACTTTAATATTTTACATGCTAAGTTGGGGTTGCTAAATTCAGTTTCTGTAGGTCAATCTGGCCCCATAAAACTTCAGAGAGGTTTAGCGTTGGTAGTAGTAATTGTTCAACTCTCAATGGTTTTGTGGGCTCTCTGCGTCCCCATTAATATTATGTGATGTTAGGTGAATTTGTAGTCTCCTTTGTTCCCAACCATAGAATCCCAAATGATATTAACTGGAGTGGAAACGTGAGCGTTGAACTTATCTTTCTAGTTCAAAGTGAATGTCATGGCGTGACTTGACACAATTTCTTAAATTAAATTGGGAAGAAAAGTAAGAATAGTTTTTGAATTTGGAAAATCCTGCTTAATTTTTTCGAGGTATCATATTCAATGAGGCGTGAAATGTTAAAACACTTTGTTTCCAAATATAGGATATAAACATGGATGTTGAGGATTCATATAGTTGAACCCCACTGATTTTGAGTTCAGCATTGTTGTTGTTGTTGTAGATTATAGAATTTACATTTAGGATCAGCTGAAAAAAGAATCTTAGCTCCAAATAAAAAACGGAGCAGTCTTAGTTACTGTTCATTTAGATAGAATTGAAAGTTCAGCGAGATGTCACTTATTTCAATTGCTATGATGTGTAGTATTGTGCATCATATAAAGATGGTTCATAATCTAAGTCGGGTTCAAATTAGCTCAATCTAATTAGTTAACCAAATATCACAGAAGGAATATAAAGGATTACTGTAGGCAAGCCAACTAGCGTGTGATTGAAAGCAGTTGATTCATAGAATTAGTGAACCAAATTATGGCCACCAAAAAAAATCCTATTATAGATTAAATCTTATTTCCCATTATTGATTTTCAGAATAAGAATTGAATGTATATCTAGTCTAGTACTTTGTCCAAAGTTCATAAGGGTATCCCATATTAAACTAGGATGTAAACATTGGATTGAACTTGTTATGATATATTCCGATATCCTGTGTCGCAAGTACTATCCAGCTATGCTTTGGCTGAACAAATCGTTGGCTGTATATTCTTCGCACATTTATCATGCTGCCTGTTGCTAAACATGTGTATTGACCATAACTATCGACTAATCCTAATTTAGAACTGAGACACAGTGGTTCTGGTGTGAGTATTGCTTGTTAATTTCCAAAGGTTTTCCTTGTTTTAGATTGAAAGTTAAGATGTTATAACTTTTCTCAAGCTGCAATGAATTGGATTATCAGAATAGATCAATTGATGTCAAGTGCATGCATTCATGTATATTGGTCTCTCCATACATGCACCATTATATATACCATGTTCACGTGTGAAATCATTGGCCGTAGATAGACAAGCATAGGTAACGTTTATAATCATGTGTTCATATATAGAATCTTACATCTTTCTCAATGTACTTTACAGGTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGC</genome_strand>
        <mrna_strand>AAGGAGACAGTCACCATGGATTCCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACAC.....................................................................................................................................GTCAAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265905" ref_strand="+" ref_description="SGN-E265905 [cLEI-11-L12]">
      <seq>aaggagacagtcaccatggattccccaagtgttatcccttatatctttttgctacttcttgttggatgctcggccagacctctctacccacttcctggcagaagaaatgataggaataaacagcctttacaaacattttgagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagacggcgctcttatatgtttccatgatgtcatacttgatgatacaactgatatagcaaatcacaaggaatttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagcttctgcgtgttaagcagagatatcctttcagagatcagcaatataatggagaatcttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5198" stop="9201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5498" g_stop="5525" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5526" i_stop="7719" i_length="2194">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7720" g_stop="7898" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="207" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="391" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="466" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8828" g_stop="8901" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="540" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E265905" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5498" e_stop="5525"/>
          <exon e_start="7720" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGACAGTCACCATGGATTCCCCAAGTAAGTATTACAATCCCCAGTTTTGTTGTTTCTGTGTTTCGTTATGTTATTTGTTGTATTTGGTGTTGGAATGAAATAGAGCAGGGTGGATTTAGTTATAATGCCCTCTATTTCGTATTATTCTACGAGTTAGAGGTAAGGTCTGTGTATATTCTAATCTCACCGACCAAAACAATGGGATTATACGGTATGTTGTTGTTGTTATTATGGTTTACCTTAGCTAGTTTGGGATTATGTTTGTATTCTAGGAATGTAATTTTTTCAATATTGTCACTTGGTTCTTGAAAATTGTGTATTTTAGCTTAGATTGTGTATATCTACAACCCCTTTATGTATATAGCTGCTGGATTAAGTGGAATCATTTGAAAGATTGTTTTTTTTCTGGGTTTTTAACTTTTAAGTTCTCTATGGGCTCAAATCTTTCAAGTAATGTACAGTGACAATTAGTTATTGAAATCTGCACTCAGATTATATGTCTACTCATAATTTACTTCGAGTAAATGGGAAGGTTGAACAGTTTTTCAACTGTGTGCCTTGTCTGGTGCTCTGACAATTACAAATTCTTGTCAAGGCATTTCCCAGTAAGCACGCATTATATGCAGTGTCTTTGCATTTATTTGATATCTAATTAACTTGTGGTGATACCATAACTTTATATATTATGGGGAGTAGGTGGTGCTGATACAAGAAAATAAAGAGATAAGTGTGTTAAAATCTACTCGTCTCATTAATACATGACAGATTTACACCTTTAAATTGGTTGGTAACTCTTTATGTGAGAAATTGTATGCAACTTTAATATTTTACATGCTAAGTTGGGGTTGCTAAATTCAGTTTCTGTAGGTCAATCTGGCCCCATAAAACTTCAGAGAGGTTTAGCGTTGGTAGTAGTAATTGTTCAACTCTCAATGGTTTTGTGGGCTCTCTGCGTCCCCATTAATATTATGTGATGTTAGGTGAATTTGTAGTCTCCTTTGTTCCCAACCATAGAATCCCAAATGATATTAACTGGAGTGGAAACGTGAGCGTTGAACTTATCTTTCTAGTTCAAAGTGAATGTCATGGCGTGACTTGACACAATTTCTTAAATTAAATTGGGAAGAAAAGTAAGAATAGTTTTTGAATTTGGAAAATCCTGCTTAATTTTTTCGAGGTATCATATTCAATGAGGCGTGAAATGTTAAAACACTTTGTTTCCAAATATAGGATATAAACATGGATGTTGAGGATTCATATAGTTGAACCCCACTGATTTTGAGTTCAGCATTGTTGTTGTTGTTGTAGATTATAGAATTTACATTTAGGATCAGCTGAAAAAAGAATCTTAGCTCCAAATAAAAAACGGAGCAGTCTTAGTTACTGTTCATTTAGATAGAATTGAAAGTTCAGCGAGATGTCACTTATTTCAATTGCTATGATGTGTAGTATTGTGCATCATATAAAGATGGTTCATAATCTAAGTCGGGTTCAAATTAGCTCAATCTAATTAGTTAACCAAATATCACAGAAGGAATATAAAGGATTACTGTAGGCAAGCCAACTAGCGTGTGATTGAAAGCAGTTGATTCATAGAATTAGTGAACCAAATTATGGCCACCAAAAAAAATCCTATTATAGATTAAATCTTATTTCCCATTATTGATTTTCAGAATAAGAATTGAATGTATATCTAGTCTAGTACTTTGTCCAAAGTTCATAAGGGTATCCCATATTAAACTAGGATGTAAACATTGGATTGAACTTGTTATGATATATTCCGATATCCTGTGTCGCAAGTACTATCCAGCTATGCTTTGGCTGAACAAATCGTTGGCTGTATATTCTTCGCACATTTATCATGCTGCCTGTTGCTAAACATGTGTATTGACCATAACTATCGACTAATCCTAATTTAGAACTGAGACACAGTGGTTCTGGTGTGAGTATTGCTTGTTAATTTCCAAAGGTTTTCCTTGTTTTAGATTGAAAGTTAAGATGTTATAACTTTTCTCAAGCTGCAATGAATTGGATTATCAGAATAGATCAATTGATGTCAAGTGCATGCATTCATGTATATTGGTCTCTCCATACATGCACCATTATATATACCATGTTCACGTGTGAAATCATTGGCCGTAGATAGACAAGCATAGGTAACGTTTATAATCATGTGTTCATATATAGAATCTTACATCTTTCTCAATGTACTTTACAGGTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATAT</genome_strand>
        <mrna_strand>AAGGAGACAGTCACCATGGATTCCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTTGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATCTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422111" ref_strand="+" ref_description="SGN-E422111 [STM-34-I21]">
      <seq>gaaggagacagtctccatgggttcaccaagtgttgtcccttatatctttctgctacttcttgttggatgctcggccagacctctctacccacttcctggcagaagaaatgataggaataagcagcctttacaaacatttagagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagatggcgctcttatatgtttccatgatgtcatacttgatgatatgactgatatagcaaatcacaaggagtttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatatttcctggttgacttcacccttgaagaattgaagcttctgcgcgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatatccagagataaaaaatccagtcctcatcaaccaacacgtcaaatggccaggtggtaagaaatttgaggacaagtttgttgagacactgaagaagtatggatacaatggttcatatatgtcgaagcaatggttaaagcagcctgcattcattncatcttttgcngcaacgtcactaatttatatttcaaaccaaacagacctgcctaagatcttcctcattgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7413" stop="9558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7720" g_stop="7898" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="208" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="392" r_length="184" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="467" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="577" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9071" g_stop="9258" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="765" r_length="188" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E422111" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7720" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
          <exon e_start="9071" e_stop="9258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGA</genome_strand>
        <mrna_strand>GTGTTGTCCCTTATATCTTTCTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAGCAGCCTTTACAAACATTTAGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGATGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATATGACTGATATAGCAAATCACAAGGAGTTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTCCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGCGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTCATCAACCAACAC.....................................................................................................................................GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAATGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTNCATCTTTTGCNGCAACGTCACTAATTTATATTTCAAACCAAACAGACCTGCCTAAGATCTTCCTCATTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408550" ref_strand="+" ref_description="SGN-E408550 [PPI-11-M24]">
      <seq>gaaggagacagtctccatgggttcaccaagtgttgtcccttatatctttctgctacttcttgttggatgctcggccagacctctctacccacttcctggcagaagaaatgataggaataagcagcctttacaaacatttagagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagatggcgctcttatatgtttccatgatgtcatacttgatgatatgactgatatagcaaatcacaaggagtttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatatttcctggttgacttcacccttgaagaattgaagcttctgcgcgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatatccagagataaaaaatccagtcctcatcaaccaacacgtcaaatggccaggtggtaagaaatttgaggacaagtttgttgagacactgaagaagtatggatacaatggttcatatatgtcgaagcaatggttaaagcagcctgcattcattcaatcttttgcgccaacgtcactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7413" stop="9510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7720" g_stop="7898" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="208" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="392" r_length="184" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="467" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="577" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9071" g_stop="9210" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="717" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E408550" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7720" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
          <exon e_start="9071" e_stop="9210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAAT</genome_strand>
        <mrna_strand>GTGTTGTCCCTTATATCTTTCTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAGCAGCCTTTACAAACATTTAGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGATGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATATGACTGATATAGCAAATCACAAGGAGTTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTCCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGCGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTCATCAACCAACAC.....................................................................................................................................GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAATGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCAACGTCACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374704" ref_strand="+" ref_description="SGN-E374704 [TUS-14-H6]">
      <seq>ctctacccacttcctggcagaagaaatgataggaataaacagcctttacaaacatttcgagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagacggcgctcttatatgtttccatgatgtcatacttgatgatacaactgatatagcaaatcacaaggaatttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagcttctgcgtgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatatccagagataaaaaatccagtccttatcaaccaacacgtcaaatggccaggtggtaagaaatttgaggacaagtttgttgagacactgaagaagtatggatacaaaggttcatatatgtcgaagcaatggttaaagcagcctgcattcattcaatcttttgcgccgacgtcacttatttatatttcaaaccaaacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7473" stop="9531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7773" g_stop="7898" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="310" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="385" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="495" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9071" g_stop="9231" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="656" r_length="161" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E374704" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7773" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
          <exon e_start="9071" e_stop="9231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGA</genome_strand>
        <mrna_strand>CTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACAC.....................................................................................................................................GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTTATTTATATTTCAAACCAAACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202389" ref_strand="+" ref_description="SGN-E202389 [cLEC-6-L4]">
      <seq>ctctacccacttcctggcagaagaaatgataggaataaacagcctttacaaacatttcgagcttacaacattgcacaccgaggttcaaatggagaaattcctgaagaaactgcagcagcatacatgagagctattgaagagggtactgatttcatcgaaacagatattttagcatctaaagacggcgctcttatatgtttccatgatgtcatacttgatgatacaactgatatagcaaatcacaaggaatttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagcttctgcgtgttaagcagagatatcctttcagagatcagcaatataatggagaattgtctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgctggaatatatccagagataaaaaatccagtccttatcaaccaacacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7473" stop="9239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7773" g_stop="7898" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8161" g_stop="8344" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="310" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="385" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="495" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E202389" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7773" e_stop="7898"/>
          <exon e_start="8161" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATGGTATGTCTACAATAGAATCATCATATAATTTTCAAAACATCCAGTTTCCAAAGTAGTAACTAGAAACCGGGTCTAGTCTCCAATAAAATGGCTTCACTTATGGTCACATGGTTGATACTTAAAGTACAATTATAGGGAAAATTCTTTTTGATGTTTGTAAAACACCTTTCTGCTTGCAGTAACTGATGTTGAAATAGAAGCAAACAGGTTGTTTATATAAATAAACTGCAAAACATGCCCCTGAAACTCTAGTATTATGCAGAGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACAC</genome_strand>
        <mrna_strand>CTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG......................................................................................................................................................................................................................................................................AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTGTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGCTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201031" ref_strand="+" ref_description="SGN-E201031 [cLEC-5-H4]">
      <seq>agagggtactgatttcatcgaaacagatattttagcatctaaagacggcgctcttatatgtttccatgatgtcatacttgatgatacaactgatatagcaaatcacaaggaatttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7872" stop="8862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8172" g_stop="8344" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8535" g_stop="8562" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="201" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E201031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8172" e_stop="8344"/>
          <exon e_start="8535" e_stop="8562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCT</genome_strand>
        <mrna_strand>AGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422109" ref_strand="+" ref_description="SGN-E422109 [STM-34-I19]">
      <seq>atttcatcgaaacagatattttagcatctaaagatggcgctcttatatgtttccatgatgtcatacttgatgatatgactgatatagcaaatcacaaggagtttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatatttcctggttgacttcacccttgaagaattgaagcttctgcgcgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatatccagagataaaaaatccagtcctcatcaaccaacacgtcaaatggccaggtggtaagaaatttgaggacaagtttgttgagacactgaagaagtatggatacaatggttcatatatgtcgaagcaatggttaaagcagcctgcattcattcaatcttttgcgccaacgtcactaatttatatttcaaaccaaacagacctgcctaagatcttcctcattgatgacacaaatacaccaactcaagacaccaatcagtcatattgggagattacttcagatggttatcttgactatatcaaggaatatgtggtggggattgggccctggaaggacaccatagttccttgttccagcaattatctgcaaacaccttctgatctcgttgcaagagcacatgcccgtaatctacaggtgcatccatacactttccgggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7883" stop="10796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8183" g_stop="8344" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="237" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="347" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9071" g_stop="9289" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="566" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9729" g_stop="9884" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="722" r_length="156" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10472" g_stop="10496" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="748" r_length="26" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E422109" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8183" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
          <exon e_start="9071" e_stop="9289"/>
          <exon e_start="9729" e_stop="9884"/>
          <exon e_start="10472" e_stop="10496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAGGTTTTCATCCCCTCTCTCCTAGCTAGCACTGTATGTTACAAAGAAGAAGTTGGCTATCTTATGTTGGAAATGCTAAATTCGAGATAGAAAACAAAGAAAGTTTTTACCCACAATTTAGAAGCATATACAAAAAGGAAATCCAAACTTTTAGGACTTCGATAAAAGTATCAACTACATCTGCAGTCTAGACACACCGGTAAAGATTTGTATAAAGCATGTAATATTCAGATCTTGTTTAAAAGTTTACAGGATTAACAAGTACACTTTACAGGCTTGATAAAAAATAAAAATTTTCTGTTTGCTGATTAAGAAATTAACCTCCATTCTAACATGTATTCCCTTTTTAGGAATATAGTTTTGTTGAAAAGATACCCTAGAGAAATCTGATTGTCACACTGTTTTGCTATTTAGAAAATTAATGATCCTTTTTACATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAGGTATCTGATCAATCATTGATTATGGGATATCATTGACATGTGAAGTTAATTGATGATATGATATTTTCTTCCACTGGTCTCTGTTCCACGGTTTTTGATTTTATTGTGCGCTAATATTAGATTACTGTTAATTGAAGGAAAAGGAAATACCTATATATCATGTAAAGTGATATCATGTAAAGTGTTTTCAATTGACATGTTATGTACATTTCTAACTTGTTGAGTCTGTTCTGTTGTAAGTTTGAGGGGTGCTGGGTTGCTTCTAGTTGGTGAATGTCTGCCTCTAAGTTCCAAGGTTATTGTTTTTACATCTAATTCTTAGAGAACCTAATGAGTCACTATGCATTAATGACTAGTGCCTTCTATCATAGATCTGCTATCATCTTATGTTTAGCACGCCTCTTCTTAGAATTGTCGAGTTTCCATTAACTAGTGCCTTCTGAATTATTGAGTTTTCAAAGAAAATGAATGAACCTGCTTTACTACCTATCTCATGTGTAGAAATGGTATTTCTTTTTTCTCCTTTTCCGTGCAATTCATCTTAATTTCATACATATTCATCCTCTGAATTTCAATAACAAATTCAGGTGCATCCATACACTTTCC-GGAATG</genome_strand>
        <mrna_strand>ATTTCATCGAAACAGATATTTTAGCATCTAAAGATGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATATGACTGATATAGCAAATCACAAGGAGTTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTCCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGCGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTCATCAACCAACAC.....................................................................................................................................GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAATGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCAACGTCACTAATTTATATTTCAAACCAAACAGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTGGGAGATTACTTCAGATGGTTATCTTGACTATATCAAGGAATATGTGGTGGGGATTGGGCCCTGGAAGGACACCATAGTTCCTTGTTCCAGCAATTATCTGCAAACACCTTCTGATCTCGTTGCAAGAGCACATGCCCGTAATCTACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCCATACACTTTCCGGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408530" ref_strand="+" ref_description="SGN-E408530 [PPI-11-I24]">
      <seq>atttcatcgaaacagatattttagcatctaaagatggcgctcttatatgtttccatgatgtcatacttgatgatatgactgatatagcaaatcacaaggagtttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatatttcctggttgacttcacccttgaagaattgaagcttctgcgcgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatatccagagataaaaaatccagtcctcatcaaccaacacgtcaaatggccaggtggtaagaaatttgaggacaagtttgttgagacactgaagaagtatggatacaatggttcatatatgtcgaagcaatggttaaagcagcctgcattcattcaatcttttgcgccaacgtcactaatttatatttcaaaccaaacagacctgcctaagatcttcctcattgatgacacaaatacaccaactcaagacaccaatcagtcatattgggagattacttcagatggttatcttgactatatcaaggaatatgtggtggggattgggccctggaagacaccatagttccttgttccagcaattatctgcaaacaccttctgatctcgttgcaagagcacatgcccgtaatctacaggtgcatccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7883" stop="10186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8183" g_stop="8344" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="237" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="347" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9071" g_stop="9289" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="566" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9729" g_stop="9884" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="721" r_length="155" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E408530" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8183" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
          <exon e_start="9071" e_stop="9289"/>
          <exon e_start="9729" e_stop="9884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAGGTTTTCATCCCCTCTCTCCTAGCTAGCACTGTATGTTACAAAGAAGAAGTTGGCTATCTTATGTTGGAAATGCTAAATTCGAGATAGAAAACAAAGAAAGTTTTTACCCACAATTTAGAAGCATATACAAAAAGGAAATCCAAACTTTTAGGACTTCGATAAAAGTATCAACTACATCTGCAGTCTAGACACACCGGTAAAGATTTGTATAAAGCATGTAATATTCAGATCTTGTTTAAAAGTTTACAGGATTAACAAGTACACTTTACAGGCTTGATAAAAAATAAAAATTTTCTGTTTGCTGATTAAGAAATTAACCTCCATTCTAACATGTATTCCCTTTTTAGGAATATAGTTTTGTTGAAAAGATACCCTAGAGAAATCTGATTGTCACACTGTTTTGCTATTTAGAAAATTAATGATCCTTTTTACATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAG</genome_strand>
        <mrna_strand>ATTTCATCGAAACAGATATTTTAGCATCTAAAGATGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATATGACTGATATAGCAAATCACAAGGAGTTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTCCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGCGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTCATCAACCAACAC.....................................................................................................................................GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAATGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCAACGTCACTAATTTATATTTCAAACCAAACAGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTGGGAGATTACTTCAGATGGTTATCTTGACTATATCAAGGAATATGTGGTGGGGATTGGGCCCTGGAA-GACACCATAGTTCCTTGTTCCAGCAATTATCTGCAAACACCTTCTGATCTCGTTGCAAGAGCACATGCCCGTAATCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344473" ref_strand="+" ref_description="SGN-E344473 [cTOF-14-D3]">
      <seq>gatgtcatacttgatgatacaactgatatagcaaatcacaaggaatttgctgatcgaaagaggacctatgatgttcaaggggttaacactactggatattttctggttgacttcacccttgaagaattgaagcttctgcgtgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatatccagagataaaaaatccagtccttatcaaccaacacgtcaaatggccaggtggtaagaaatttgaggacaagtttgttgagacactgaagaagtatggatacaaaggttcatatatgtcgaagcaatggttaaagcagcctgcattcattcaatcttttgcgccgacgtcactaatttatatatcaaaccaaacggacctgcctaagatcttcctcattgatgacacaaatacaccaactcaagacaccaatcagtcttgtggggagattactgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7939" stop="9594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8239" g_stop="8344" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="181" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="291" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9071" g_stop="9289" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="510" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E344473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8239" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
          <exon e_start="9071" e_stop="9289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG</genome_strand>
        <mrna_strand>GATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACAC.....................................................................................................................................GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576464" ref_strand="+" ref_description="SGN-E576464 [59687]">
      <seq>ggatattttctggttgacttcacccttgnaagaattgaagcttctgcgcgttaagcagagatatcctttcagagatcagcaatataatggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgtaggaatatatccagagattaaaaatccagtccttatcaaccaacacgtcaaatggccaggtggtaagaaatttgaggacaagtttgttgagacactgaagaagtatggatacaatggttcatatatgtcgaagcaatggttaaagcagcctgcattcattcaatcttttgcgccaacgtcactaatttatatatcaaaccaaacagacctgcctaagatcttcctcattgatgacacaaatacaccaactcaagacaccaatcagtcatattgggagattacttcagatggttatcttgactatatcaaggaatatgtggtggggattgggccctggaaggacaccatagttccttgttccagcaattatatgcaaacaccttctgatctcgtcgcaagagcacatgcccgtaatctacaggtgcatccatacactttccggaatgagaaccaatttgtacatttcaacttcagtgaagatccatacaacgagtttgactactggataaacaagatgggggttgatggcctcttcacagacttcacaggcagccttcaccactatcaggaatggaccaatccatttgcatctggagcaaaaagaagcaactaggcttctgaataagattgaattgatgctttccaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8234" stop="10999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8332" g_stop="8344" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190">
            <donor d_prob="0.822" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8535" g_stop="8609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="89" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8828" g_stop="8937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="199" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9071" g_stop="9289" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="418" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9729" g_stop="9884" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="574" r_length="156" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10472" g_stop="10699" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="803" r_length="229" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E576464" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8332" e_stop="8344"/>
          <exon e_start="8535" e_stop="8609"/>
          <exon e_start="8828" e_stop="8937"/>
          <exon e_start="9071" e_stop="9289"/>
          <exon e_start="9729" e_stop="9884"/>
          <exon e_start="10472" e_stop="10699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATTTTCTGGGTATGGATGTTATAATTTCACTTGTGCTAACTTCTGTTTTATTACATTGATAATAGAATATGTCCTCTTGCTGTCACATTGTGTTAGCTTCATTTTATTCAGTTTACCTTCCAAGTATTGTACTATTTCTTTACTGATATGATATGTATCATTACTTCATCTATTAGTAATTTCTTGTACTATTATGCAGTTGACTTCACCCTTG-AAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATGGTTAGTTTTCTAAACGTTCCTATAAACATAAAACAAGATAGAGAAATTTATGCTATGTGAAATGTTACATCAACAAAAAATGGTGCTTTTGATTGACTCTTCCCAACAACAAGGCATGCGTGCTCCTGCTATTACTCTATATGAGGATAGTTTCTTCAGAAAAATGCATCTCACTGCCTCCAATATTTTCACCTTTTCCGTTTTCAATTAACTGGCAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAGGTTTTCATCCCCTCTCTCCTAGCTAGCACTGTATGTTACAAAGAAGAAGTTGGCTATCTTATGTTGGAAATGCTAAATTCGAGATAGAAAACAAAGAAAGTTTTTACCCACAATTTAGAAGCATATACAAAAAGGAAATCCAAACTTTTAGGACTTCGATAAAAGTATCAACTACATCTGCAGTCTAGACACACCGGTAAAGATTTGTATAAAGCATGTAATATTCAGATCTTGTTTAAAAGTTTACAGGATTAACAAGTACACTTTACAGGCTTGATAAAAAATAAAAATTTTCTGTTTGCTGATTAAGAAATTAACCTCCATTCTAACATGTATTCCCTTTTTAGGAATATAGTTTTGTTGAAAAGATACCCTAGAGAAATCTGATTGTCACACTGTTTTGCTATTTAGAAAATTAATGATCCTTTTTACATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAGGTATCTGATCAATCATTGATTATGGGATATCATTGACATGTGAAGTTAATTGATGATATGATATTTTCTTCCACTGGTCTCTGTTCCACGGTTTTTGATTTTATTGTGCGCTAATATTAGATTACTGTTAATTGAAGGAAAAGGAAATACCTATATATCATGTAAAGTGATATCATGTAAAGTGTTTTCAATTGACATGTTATGTACATTTCTAACTTGTTGAGTCTGTTCTGTTGTAAGTTTGAGGGGTGCTGGGTTGCTTCTAGTTGGTGAATGTCTGCCTCTAAGTTCCAAGGTTATTGTTTTTACATCTAATTCTTAGAGAACCTAATGAGTCACTATGCATTAATGACTAGTGCCTTCTATCATAGATCTGCTATCATCTTATGTTTAGCACGCCTCTTCTTAGAATTGTCGAGTTTCCATTAACTAGTGCCTTCTGAATTATTGAGTTTTCAAAGAAAATGAATGAACCTGCTTTACTACCTATCTCATGTGTAGAAATGGTATTTCTTTTTTCTCCTTTTCCGTGCAATTCATCTTAATTTCATACATATTCATCCTCTGAATTTCAATAACAAATTCAGGTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAG-AAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTC</genome_strand>
        <mrna_strand>GGATATTTTCTGG..............................................................................................................................................................................................TTGACTTCACCCTTGNAAGAATTGAAGCTTCTGCGCGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG..........................................................................................................................................................................................................................GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTAGGAATATATCCAGAGATTAAAAATCCAGTCCTTATCAACCAACAC.....................................................................................................................................GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAATGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCAACGTCACTAATTTATATATCAAACCAAACAGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTGGGAGATTACTTCAGATGGTTATCTTGACTATATCAAGGAATATGTGGTGGGGATTGGGCCCTGGAAGGACACCATAGTTCCTTGTTCCAGCAATTATATGCAAACACCTTCTGATCTCGTCGCAAGAGCACATGCCCGTAATCTACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCCATACACTTTCCGGAATGAGAACCAATTTGTACATTTCAACTTCAGTGAAGATCCATACAACGAGTTTGACTACTGGATAAACAAGATGGGGGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGCAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214351" ref_strand="+" ref_description="SGN-E214351 [cLEC-77-I13]">
      <seq>caggagaattttctatcattacttttgaggagttcatctcaattgcattggatgcccatagagttgttggaatatatccagagataaaaaatccagtccttatcaaccaacacgtcaaatggccaggtggtaagaaatttgaggacaagtttgttgagacactgaagaagtatggatacaaaggttcatatatgtcgaagcaatggttaaagcagcctgcattcattcaatcttttgcgccgacgtcactaatttatatatcaaaccaaacggacctgcctaagatcttcctcattgatgacacaaatacaccaactcaagacaccaatcagtcatattgggagattactgcagatggttatcttgattatatcaaggattatgtggtggggattggtccctggaaggacaccatagttccttgttccaacaattatctgcaaacaccttctgatctcatcgcaagagcacatgcccgtaatctacaggtgcatccatacactttccggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8525" stop="10796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8825" g_stop="8937" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9071" g_stop="9289" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="332" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9729" g_stop="9884" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="488" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10472" g_stop="10496" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="513" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E214351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8825" e_stop="8937"/>
          <exon e_start="9071" e_stop="9289"/>
          <exon e_start="9729" e_stop="9884"/>
          <exon e_start="10472" e_stop="10496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACACGTGAGTTCATTCCCTTTCTGCTACAAAATTGGTCAAACTGATATTATTGCAGAGTATGTTTTGCTGGAAAATCAATTGATACCCTTATGTATTACTTTCAGTTATCTTATACACTAACTACTGGTTCCAACAGGTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAGGTTTTCATCCCCTCTCTCCTAGCTAGCACTGTATGTTACAAAGAAGAAGTTGGCTATCTTATGTTGGAAATGCTAAATTCGAGATAGAAAACAAAGAAAGTTTTTACCCACAATTTAGAAGCATATACAAAAAGGAAATCCAAACTTTTAGGACTTCGATAAAAGTATCAACTACATCTGCAGTCTAGACACACCGGTAAAGATTTGTATAAAGCATGTAATATTCAGATCTTGTTTAAAAGTTTACAGGATTAACAAGTACACTTTACAGGCTTGATAAAAAATAAAAATTTTCTGTTTGCTGATTAAGAAATTAACCTCCATTCTAACATGTATTCCCTTTTTAGGAATATAGTTTTGTTGAAAAGATACCCTAGAGAAATCTGATTGTCACACTGTTTTGCTATTTAGAAAATTAATGATCCTTTTTACATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAGGTATCTGATCAATCATTGATTATGGGATATCATTGACATGTGAAGTTAATTGATGATATGATATTTTCTTCCACTGGTCTCTGTTCCACGGTTTTTGATTTTATTGTGCGCTAATATTAGATTACTGTTAATTGAAGGAAAAGGAAATACCTATATATCATGTAAAGTGATATCATGTAAAGTGTTTTCAATTGACATGTTATGTACATTTCTAACTTGTTGAGTCTGTTCTGTTGTAAGTTTGAGGGGTGCTGGGTTGCTTCTAGTTGGTGAATGTCTGCCTCTAAGTTCCAAGGTTATTGTTTTTACATCTAATTCTTAGAGAACCTAATGAGTCACTATGCATTAATGACTAGTGCCTTCTATCATAGATCTGCTATCATCTTATGTTTAGCACGCCTCTTCTTAGAATTGTCGAGTTTCCATTAACTAGTGCCTTCTGAATTATTGAGTTTTCAAAGAAAATGAATGAACCTGCTTTACTACCTATCTCATGTGTAGAAATGGTATTTCTTTTTTCTCCTTTTCCGTGCAATTCATCTTAATTTCATACATATTCATCCTCTGAATTTCAATAACAAATTCAGGTGCATCCATACACTTTCCGGAATG</genome_strand>
        <mrna_strand>CAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACAC.....................................................................................................................................GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCCATACACTTTCCGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392505" ref_strand="+" ref_description="SGN-E392505 [TUS-36-B11]">
      <seq>tatttttacaaaggttcatatattttaaatcaatggttaaagcaccctgcattcattcaatcttttgcgccgacttcactaatttatatatcaaaccaaacggacctgcctaagatcttcctcattgatgacacaaatacaccaactcaagacaccaatcaatcatattgggagattactgcagatggttatcttgattatatcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8834" stop="10074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9128" g_stop="9289" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9729" g_stop="9774" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="208" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E392505" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9128" e_stop="9289"/>
          <exon e_start="9729" e_stop="9774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAGGTTTTCATCCCCTCTCTCCTAGCTAGCACTGTATGTTACAAAGAAGAAGTTGGCTATCTTATGTTGGAAATGCTAAATTCGAGATAGAAAACAAAGAAAGTTTTTACCCACAATTTAGAAGCATATACAAAAAGGAAATCCAAACTTTTAGGACTTCGATAAAAGTATCAACTACATCTGCAGTCTAGACACACCGGTAAAGATTTGTATAAAGCATGTAATATTCAGATCTTGTTTAAAAGTTTACAGGATTAACAAGTACACTTTACAGGCTTGATAAAAAATAAAAATTTTCTGTTTGCTGATTAAGAAATTAACCTCCATTCTAACATGTATTCCCTTTTTAGGAATATAGTTTTGTTGAAAAGATACCCTAGAGAAATCTGATTGTCACACTGTTTTGCTATTTAGAAAATTAATGATCCTTTTTACATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGG</genome_strand>
        <mrna_strand>TATTTTTACAAAGGTTCATATATTTTAAATCAATGGTTAAAGCACCCTGCATTCATTCAATCTTTTGCGCCGACTTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238011" ref_strand="+" ref_description="SGN-E238011 [cLED-18-B10]">
      <seq>atggatacaaaggttcatatatgtcgaagcaatggttaaagcagcctgcattcattcaatcttttgcgccgacgtcactaatttatatatcaaaccaaacggacctgcctaagatcttcctcattgatgacacaaatacaccaactcaagacaccaatcagtcatattgggagattactgcagatggttatcttgattatatcaaggattatgtggtggggattggtccctggaaggacaccatagttccttgttccaacaattatctgcaaacaccttctgatctcatcgcaagagcacatgcccgtaatctacaggtgcatccatacactttccggaatgagaaccaattcgtacacttcaacttcagtgaagatccatacaacgagtatgactactggataaacaagatgggagttgatggcctcttcacagacttcacaggcagccttcaccactatcaggaatggaccaatccatttgcatctggagaaaaagaagcaactaggcttctgaataagattgaattgatgctttccaagttcaagtacacctgagttaaattctattcaacattgtctgtggcaaggcaatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8829" stop="11053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9129" g_stop="9289" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9729" g_stop="9884" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="317" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10472" g_stop="10753" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="599" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E238011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9129" e_stop="9289"/>
          <exon e_start="9729" e_stop="9884"/>
          <exon e_start="10472" e_stop="10753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAGGTTTTCATCCCCTCTCTCCTAGCTAGCACTGTATGTTACAAAGAAGAAGTTGGCTATCTTATGTTGGAAATGCTAAATTCGAGATAGAAAACAAAGAAAGTTTTTACCCACAATTTAGAAGCATATACAAAAAGGAAATCCAAACTTTTAGGACTTCGATAAAAGTATCAACTACATCTGCAGTCTAGACACACCGGTAAAGATTTGTATAAAGCATGTAATATTCAGATCTTGTTTAAAAGTTTACAGGATTAACAAGTACACTTTACAGGCTTGATAAAAAATAAAAATTTTCTGTTTGCTGATTAAGAAATTAACCTCCATTCTAACATGTATTCCCTTTTTAGGAATATAGTTTTGTTGAAAAGATACCCTAGAGAAATCTGATTGTCACACTGTTTTGCTATTTAGAAAATTAATGATCCTTTTTACATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAGGTATCTGATCAATCATTGATTATGGGATATCATTGACATGTGAAGTTAATTGATGATATGATATTTTCTTCCACTGGTCTCTGTTCCACGGTTTTTGATTTTATTGTGCGCTAATATTAGATTACTGTTAATTGAAGGAAAAGGAAATACCTATATATCATGTAAAGTGATATCATGTAAAGTGTTTTCAATTGACATGTTATGTACATTTCTAACTTGTTGAGTCTGTTCTGTTGTAAGTTTGAGGGGTGCTGGGTTGCTTCTAGTTGGTGAATGTCTGCCTCTAAGTTCCAAGGTTATTGTTTTTACATCTAATTCTTAGAGAACCTAATGAGTCACTATGCATTAATGACTAGTGCCTTCTATCATAGATCTGCTATCATCTTATGTTTAGCACGCCTCTTCTTAGAATTGTCGAGTTTCCATTAACTAGTGCCTTCTGAATTATTGAGTTTTCAAAGAAAATGAATGAACCTGCTTTACTACCTATCTCATGTGTAGAAATGGTATTTCTTTTTTCTCCTTTTCCGTGCAATTCATCTTAATTTCATACATATTCATCCTCTGAATTTCAATAACAAATTCAGGTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTAT</genome_strand>
        <mrna_strand>ATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374703" ref_strand="+" ref_description="SGN-E374703 [TUS-14-H6](-)">
      <seq>agcctgcattcattcaatcttttgcgccgacgtcattaatttatatatcaaaccaaacggacctgcctaagatcttcctcattgatgacacaaatacaccaactcaagacaccaatcagtcatattgggagattactgcagatggttatcttgattatatcaaggattatgtggtggggattggtccctggaaggacaccatagttccttgttccaacaattatctgcaaacaccttctgatctcatcgcaagagcacatgcccgtaatctacaggtgcatccatacactttccggaatgagaaccaattcgtacacttcaacttcagtgaagatccatacaacgagtatgactactggataaacaagatgggagttgatggcctcttcacagacttcacaggcagccttcaccactatcaggaatggaccaatccatttgcatctggagaaaaagaagcaactaggcttctgaataagattgaattgatgctttccaagttcaagtacacctgagttaaattctattcaacattgtctgtggcaaggcaatgctatttattggtctgtatatatcattggctttccaatttatatttgccaaaagaaaaaacaggtttcaatatattgtaattggtgcaaatgacactcttgaagcatttggaccctcttaaccctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8871" stop="11174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9171" g_stop="9289" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9729" g_stop="9884" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="275" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10472" g_stop="10881" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="685" r_length="410" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E374703" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9171" e_stop="9289"/>
          <exon e_start="9729" e_stop="9884"/>
          <exon e_start="10472" e_stop="10881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAGGTTTTCATCCCCTCTCTCCTAGCTAGCACTGTATGTTACAAAGAAGAAGTTGGCTATCTTATGTTGGAAATGCTAAATTCGAGATAGAAAACAAAGAAAGTTTTTACCCACAATTTAGAAGCATATACAAAAAGGAAATCCAAACTTTTAGGACTTCGATAAAAGTATCAACTACATCTGCAGTCTAGACACACCGGTAAAGATTTGTATAAAGCATGTAATATTCAGATCTTGTTTAAAAGTTTACAGGATTAACAAGTACACTTTACAGGCTTGATAAAAAATAAAAATTTTCTGTTTGCTGATTAAGAAATTAACCTCCATTCTAACATGTATTCCCTTTTTAGGAATATAGTTTTGTTGAAAAGATACCCTAGAGAAATCTGATTGTCACACTGTTTTGCTATTTAGAAAATTAATGATCCTTTTTACATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAGGTATCTGATCAATCATTGATTATGGGATATCATTGACATGTGAAGTTAATTGATGATATGATATTTTCTTCCACTGGTCTCTGTTCCACGGTTTTTGATTTTATTGTGCGCTAATATTAGATTACTGTTAATTGAAGGAAAAGGAAATACCTATATATCATGTAAAGTGATATCATGTAAAGTGTTTTCAATTGACATGTTATGTACATTTCTAACTTGTTGAGTCTGTTCTGTTGTAAGTTTGAGGGGTGCTGGGTTGCTTCTAGTTGGTGAATGTCTGCCTCTAAGTTCCAAGGTTATTGTTTTTACATCTAATTCTTAGAGAACCTAATGAGTCACTATGCATTAATGACTAGTGCCTTCTATCATAGATCTGCTATCATCTTATGTTTAGCACGCCTCTTCTTAGAATTGTCGAGTTTCCATTAACTAGTGCCTTCTGAATTATTGAGTTTTCAAAGAAAATGAATGAACCTGCTTTACTACCTATCTCATGTGTAGAAATGGTATTTCTTTTTTCTCCTTTTCCGTGCAATTCATCTTAATTTCATACATATTCATCCTCTGAATTTCAATAACAAATTCAGGTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTGCCAAAAGAAAAAACAGGTTTCAATATATTGTAATTGGTGCAAATGACACTCTTGAAGCATTTGGACCCTCTTAACCCTATCTCTTA</genome_strand>
        <mrna_strand>AGCCTGCATTCATTCAATCTTTTGCGCCGACGTCATTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTGCCAAAAGAAAAAACAGGTTTCAATATATTGTAATTGGTGCAAATGACACTCTTGAAGCATTTGGACCCTCTTAACCCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622850" ref_strand="-" ref_description="SGN-E622850 [73222]">
      <seq>aatttatatatcaaaccgnacagacctgcctaagatcttcctcattgatgacacnaatacaccaactcaagacaccaatcagtcatattgggagattacttcagatggttatcttgactatatcaaggaatatgtgttggggattgggccctggaaggacaccatagttccttgttccagcaattatatgcaaacaccttctgatctcgtcgcaagagcacatgcccgtaatctacaggtgcatccatacactttccggaatgagaaccaatttgtacatttcaacttcagtgaagatccatacaacgagtttgactactggataaacaagatgggggttgatggcctcttcacagacttcacaggcagccttcaccactatcaggaatggaccaatccatttgcatctggagaaaaagaagcaactaggcttctgaataagattgaattgatgctttccaagttcaaatacacctgagttaaattctattcaacattgtctgtgacaaggcaatgctatttattggtctgtatatatcattggctttccaatttatatttaccaaaagaaaaacaggtttcaatatattgtgattagtgcaatgacactcttgaaacatttggaccctctaaacctatctcctagattattgttttatacaaaaaaaaaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8908" stop="11203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9208" g_stop="9289" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.863" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9729" g_stop="9884" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="238" r_length="156" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10472" g_stop="10899" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="663" r_length="425" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="674"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E622850" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622850" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9208" e_stop="9289"/>
          <exon e_start="9729" e_stop="9884"/>
          <exon e_start="10472" e_stop="10899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAGGTTTTCATCCCCTCTCTCCTAGCTAGCACTGTATGTTACAAAGAAGAAGTTGGCTATCTTATGTTGGAAATGCTAAATTCGAGATAGAAAACAAAGAAAGTTTTTACCCACAATTTAGAAGCATATACAAAAAGGAAATCCAAACTTTTAGGACTTCGATAAAAGTATCAACTACATCTGCAGTCTAGACACACCGGTAAAGATTTGTATAAAGCATGTAATATTCAGATCTTGTTTAAAAGTTTACAGGATTAACAAGTACACTTTACAGGCTTGATAAAAAATAAAAATTTTCTGTTTGCTGATTAAGAAATTAACCTCCATTCTAACATGTATTCCCTTTTTAGGAATATAGTTTTGTTGAAAAGATACCCTAGAGAAATCTGATTGTCACACTGTTTTGCTATTTAGAAAATTAATGATCCTTTTTACATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAGGTATCTGATCAATCATTGATTATGGGATATCATTGACATGTGAAGTTAATTGATGATATGATATTTTCTTCCACTGGTCTCTGTTCCACGGTTTTTGATTTTATTGTGCGCTAATATTAGATTACTGTTAATTGAAGGAAAAGGAAATACCTATATATCATGTAAAGTGATATCATGTAAAGTGTTTTCAATTGACATGTTATGTACATTTCTAACTTGTTGAGTCTGTTCTGTTGTAAGTTTGAGGGGTGCTGGGTTGCTTCTAGTTGGTGAATGTCTGCCTCTAAGTTCCAAGGTTATTGTTTTTACATCTAATTCTTAGAGAACCTAATGAGTCACTATGCATTAATGACTAGTGCCTTCTATCATAGATCTGCTATCATCTTATGTTTAGCACGCCTCTTCTTAGAATTGTCGAGTTTCCATTAACTAGTGCCTTCTGAATTATTGAGTTTTCAAAGAAAATGAATGAACCTGCTTTACTACCTATCTCATGTGTAGAAATGGTATTTCTTTTTTCTCCTTTTCCGTGCAATTCATCTTAATTTCATACATATTCATCCTCTGAATTTCAATAACAAATTCAGGTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTGCCAAAAGAAAAAACAGGTTTCAATATATTGTAATTGGTGCAAATGACACTCTTGAAGCATTTGGACCCTCTTAACCCTATCTCTTAGATTATGGATTTATACAA</genome_strand>
        <mrna_strand>AATTTATATATCAAACCGNACAGACCTGCCTAAGATCTTCCTCATTGATGACACNAATACACCAACTCAAGACACCAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTGGGAGATTACTTCAGATGGTTATCTTGACTATATCAAGGAATATGTGTTGGGGATTGGGCCCTGGAAGGACACCATAGTTCCTTGTTCCAGCAATTATATGCAAACACCTTCTGATCTCGTCGCAAGAGCACATGCCCGTAATCTACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCCATACACTTTCCGGAATGAGAACCAATTTGTACATTTCAACTTCAGTGAAGATCCATACAACGAGTTTGACTACTGGATAAACAAGATGGGGGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAATACACCTGAGTTAAATTCTATTCAACATTGTCTGTGACAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTACCAAAAG-AAAAACAGGTTTCAATATATTGTGATTAGTGC-AATGACACTCTTGAAACATTTGGACCCTC-TAAACCTATCTCCTAGATTATTGTTTTATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241620" ref_strand="+" ref_description="SGN-E241620 [cLED-36-D13]">
      <seq>ggacctgcctaagatcttcctcattgatgacacaaatacaccaactcaagacaccaatcagtcatattgggagattactgcagatggttatcttgattatatcaaggattatgtggtggggattggtccctggaaggacaccatagttccttgttccaacaattatctgcaaacaccttctgatctcatcgcaagagcacatgcccgtaatctacaggtgcatccatacactttccggaatgagaaccaattcgtacacttcaacttcagtgaagatccatacaacgagtatgactactggataaacaagatgggagttgatggcctcttcacagacttcacaggcagccttcaccactatcaggaatggaccaatccatttgcatctggagaaaaagaagcaactaggcttctgaataagattgaattgatgctttccaagttcaagtacacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8929" stop="11010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9229" g_stop="9289" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9729" g_stop="9884" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="217" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10472" g_stop="10710" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="456" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E241620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9229" e_stop="9289"/>
          <exon e_start="9729" e_stop="9884"/>
          <exon e_start="10472" e_stop="10710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAGGTTTTCATCCCCTCTCTCCTAGCTAGCACTGTATGTTACAAAGAAGAAGTTGGCTATCTTATGTTGGAAATGCTAAATTCGAGATAGAAAACAAAGAAAGTTTTTACCCACAATTTAGAAGCATATACAAAAAGGAAATCCAAACTTTTAGGACTTCGATAAAAGTATCAACTACATCTGCAGTCTAGACACACCGGTAAAGATTTGTATAAAGCATGTAATATTCAGATCTTGTTTAAAAGTTTACAGGATTAACAAGTACACTTTACAGGCTTGATAAAAAATAAAAATTTTCTGTTTGCTGATTAAGAAATTAACCTCCATTCTAACATGTATTCCCTTTTTAGGAATATAGTTTTGTTGAAAAGATACCCTAGAGAAATCTGATTGTCACACTGTTTTGCTATTTAGAAAATTAATGATCCTTTTTACATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAGGTATCTGATCAATCATTGATTATGGGATATCATTGACATGTGAAGTTAATTGATGATATGATATTTTCTTCCACTGGTCTCTGTTCCACGGTTTTTGATTTTATTGTGCGCTAATATTAGATTACTGTTAATTGAAGGAAAAGGAAATACCTATATATCATGTAAAGTGATATCATGTAAAGTGTTTTCAATTGACATGTTATGTACATTTCTAACTTGTTGAGTCTGTTCTGTTGTAAGTTTGAGGGGTGCTGGGTTGCTTCTAGTTGGTGAATGTCTGCCTCTAAGTTCCAAGGTTATTGTTTTTACATCTAATTCTTAGAGAACCTAATGAGTCACTATGCATTAATGACTAGTGCCTTCTATCATAGATCTGCTATCATCTTATGTTTAGCACGCCTCTTCTTAGAATTGTCGAGTTTCCATTAACTAGTGCCTTCTGAATTATTGAGTTTTCAAAGAAAATGAATGAACCTGCTTTACTACCTATCTCATGTGTAGAAATGGTATTTCTTTTTTCTCCTTTTCCGTGCAATTCATCTTAATTTCATACATATTCATCCTCTGAATTTCAATAACAAATTCAGGTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTG</genome_strand>
        <mrna_strand>GGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422112" ref_strand="-" ref_description="SGN-E422112 [STM-34-I21]">
      <seq>caatcagtcatattgggagattacttcagatggttatcttgactatatcaaggaatatgtggtggggattgggccctggaaggacaccatagttccttgttccagcaattatctgcaaacaccttctgatctcgttgcaagagcacatgcccgtaatctacaggtgcatccatacactttccggaatgagaaccaatttgtacacttcaacttcagtgaagatccatacaacgagtttgactactggataaacaagatcggagttgatggcctcttcacagacttcacaggcagccttcaccactatcaggaatggaccaatccatttgcatctggagaaaaagaagcaactaggcttctgaataagattgaattgatgctttccaagttcaaatacacctgagttaaattctattcaacattgtctgtgacaaggcaatgctatttattggtctgtatatatcaatggctttccaatttatatttaccaaaagaaaaacaggtttcaatatattgtgattagtgcaatgacactcttgaagcatttggaccctctaaacctatcgcaaagattattgattttccacgcttttagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9425" stop="11200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9721" g_stop="9884" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10472" g_stop="10893" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="582" r_length="419" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E422112" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9721" e_stop="9884"/>
          <exon e_start="10472" e_stop="10893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAGGTATCTGATCAATCATTGATTATGGGATATCATTGACATGTGAAGTTAATTGATGATATGATATTTTCTTCCACTGGTCTCTGTTCCACGGTTTTTGATTTTATTGTGCGCTAATATTAGATTACTGTTAATTGAAGGAAAAGGAAATACCTATATATCATGTAAAGTGATATCATGTAAAGTGTTTTCAATTGACATGTTATGTACATTTCTAACTTGTTGAGTCTGTTCTGTTGTAAGTTTGAGGGGTGCTGGGTTGCTTCTAGTTGGTGAATGTCTGCCTCTAAGTTCCAAGGTTATTGTTTTTACATCTAATTCTTAGAGAACCTAATGAGTCACTATGCATTAATGACTAGTGCCTTCTATCATAGATCTGCTATCATCTTATGTTTAGCACGCCTCTTCTTAGAATTGTCGAGTTTCCATTAACTAGTGCCTTCTGAATTATTGAGTTTTCAAAGAAAATGAATGAACCTGCTTTACTACCTATCTCATGTGTAGAAATGGTATTTCTTTTTTCTCCTTTTCCGTGCAATTCATCTTAATTTCATACATATTCATCCTCTGAATTTCAATAACAAATTCAGGTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTGCCAAAAGAAAAAACAGGTTTCAATATATTGTAATTGGTGCAAATGACACTCTTGAAGCATTTGGACCCTCTTAACCCTATCTCTTAGATTATGGATTT</genome_strand>
        <mrna_strand>CA-ATCAGTCATATTGGGAGATTACTTCAGATGGTTATCTTGACTATATCAAGGAATATGTGGTGGGGATTGGGCCCTGGAAGGACACCATAGTTCCTTGTTCCAGCAATTATCTGCAAACACCTTCTGATCTCGTTGCAAGAGCACATGCCCGTAATCTACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCCATACACTTTCCGGAATGAGAACCAATTTGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTTTGACTACTGGATAAACAAGATCGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAATACACCTGAGTTAAATTCTATTCAACATTGTCTGTGACAAGGCAATGCTATTTATTGGTCTGTATATATCAATGGCTTTCCAATTTATATTTACCAAAAG-AAAAACAGGTTTCAATATATTGTGATTAGTGC-AATGACACTCTTGAAGCATTTGGACCCTC-TAAACCTATCGCAAAGATTATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422110" ref_strand="+" ref_description="SGN-E422110 [STM-34-I19]">
      <seq>cttgtataaatcaataatctaggagataggtttagagggtccaaatgcttcaagagtgtcattgcactaatcacaatatattgaaacctgtttttcttttggtaaatataaattggaaagccattgatatatacagaccaataaatagcattgccttgtcacagacaatgttgaatagaatttaactcaggtgtatttgaacttggaaagcatcaattcaatcttattcagaagcctagttgcttctttttctccagatgcaaatggattggtccattcctgatagtggtgaaggctgcctgtgaagtctgtgaagaggccatcaactccgatcttgtttatccagtagtcaaactcgttgtatggatcttcactgaagttgaagtgtacaaattggttctcattccggaaagtgtatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11200" stop="10175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10900" g_stop="10475" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E422110" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10900" e_stop="10475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTATAAATCCATAATCTAAGAGATAGGGTTAAGAGGGTCCAAATGCTTCAAGAGTGTCATTTGCACCAATTACAATATATTGAAACCTGTTTTTTCTTTTGGCAAATATAAATTGGAAAGCCAATGATATATACAGACCAATAAATAGCATTGCCTTGCCACAGACAATGTTGAATAGAATTTAACTCAGGTGTACTTGAACTTGGAAAGCATCAATTCAATCTTATTCAGAAGCCTAGTTGCTTCTTTTTCTCCAGATGCAAATGGATTGGTCCATTCCTGATAGTGGTGAAGGCTGCCTGTGAAGTCTGTGAAGAGGCCATCAACTCCCATCTTGTTTATCCAGTAGTCATACTCGTTGTATGGATCTTCACTGAAGTTGAAGTGTACGAATTGGTTCTCATTCCGGAAAGTGTATGGATG</genome_strand>
        <mrna_strand>CTTGTATAAATCAATAATCTAGGAGATA-GGTTTAGAGGGTCCAAATGCTTCAAGAGTGTCA-TTGCACTAATCACAATATATTGAAACCTG-TTTTTCTTTTGGTAAATATAAATTGGAAAGCCATTGATATATACAGACCAATAAATAGCATTGCCTTGTCACAGACAATGTTGAATAGAATTTAACTCAGGTGTATTTGAACTTGGAAAGCATCAATTCAATCTTATTCAGAAGCCTAGTTGCTTCTTTTTCTCCAGATGCAAATGGATTGGTCCATTCCTGATAGTGGTGAAGGCTGCCTGTGAAGTCTGTGAAGAGGCCATCAACTCCGATCTTGTTTATCCAGTAGTCAAACTCGTTGTATGGATCTTCACTGAAGTTGAAGTGTACAAATTGGTTCTCATTCCGGAAAGTGTATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392504" ref_strand="+" ref_description="SGN-E392504 [TUS-36-B11](-)">
      <seq>aaaagaagcaactaggcttttgtttaagattgaattgatgcttttcaagttcaagtacacctgagttaaattttattcaacattgtttgtggcaaggcaatgctatttattggtctgtatatatcattggctttccaatttatatttgaaaaaagaaaaaacacgtttcaatatattgtaattggtgcaaatgacactcttgaagcatttggacccttaaaaacctattttttagattatggatttattccagagtttaaagggttcggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10348" stop="11206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10648" g_stop="10902" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="279"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E392504" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10648" e_stop="10902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTGCCAAAAGAAAAAACAGGTTTCAATATATTGTAATTGGTGCAAATGACACTCTTGAAGCATTTGGACCCTCTTAACCCTATCTCTTAGATTATGGATTTATACAAGAG</genome_strand>
        <mrna_strand>AAAAGAAGCAACTAGGCTTTTGTTTAAGATTGAATTGATGCTTTTCAAGTTCAAGTACACCTGAGTTAAATTTTATTCAACATTGTTTGTGGCAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTGAAAAAAGAAAAAACACGTTTCAATATATTGTAATTGGTGCAAATGACACTCTTGAAGCATTTGGACCCTTAAAAACCTATTTTTTAGATTATGGATTTATTCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439922" ref_strand="+" ref_description="SGN-E439922 [cSTA-14-K3]">
      <seq>ccgatatgaaggttatctatatagcacctttaaaggctattgttcgggagagaatgacggactggagaaaacgtcttgtttcccaacttggaaagaagatggttgaaatgactggtgactacaccccggatctaatggctctcttgtcagcagacatcataatctccactcctgaaaagtgggatggtattagtcgcaattggcatagtcgaagctatgtcactaaggttgggcttatgattttggatgagattcatttacttggagctgatcgaggacccatacttgaggttattgtctcaaggatgagatatatatcttctcaaacagagcggccagttcggtttgttggcctgtcaacagcattagcaaatgcacacaatttggctgattggttgggtgtcgatgaaactggcctcttcaatttcaagccaagtgtgaggcctgttcctcttgaagttcatattcagggatatcctggaaagttttactgcccgaggatgaatagtatgaacaagcccacatatgctgctatatgtacacattcaccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31043" stop="32788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31342" g_stop="31442" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31443" i_stop="31523" i_length="81">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31524" g_stop="31649" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="227" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31650" i_stop="31779" i_length="130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31780" g_stop="31842" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="290" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31843" i_stop="31957" i_length="115">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31958" g_stop="32046" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="379" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32047" i_stop="32198" i_length="152">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32199" g_stop="32289" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="470" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32290" i_stop="32405" i_length="116">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32406" g_stop="32488" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="553" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E439922" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31342" e_stop="31442"/>
          <exon e_start="31524" e_stop="31649"/>
          <exon e_start="31780" e_stop="31842"/>
          <exon e_start="31958" e_stop="32046"/>
          <exon e_start="32199" e_stop="32289"/>
          <exon e_start="32406" e_stop="32488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATATGCAGGTTATCTATATAGCACCTTTAAAGGCTATTGTTCGGGAGAGAATGACGGACTGGAGAAAACGTCTTGTTTCCCAACTTGGAAAGAAGATGGTGTGTGAAGTTTCTTTTGTTTGGGCAATATTATTATGCACTTACATGTGATATCACTACTAACTCAAATATCTTCTGCAGGTTGAAATGACTGGTGACTACACCCCGGATCTAATGGCTCTCTTGTCAGCAGACATCATAATCTCCACTCCTGAAAAGTGGGATGGTATTAGTCGCAATTGGCATAGTCGAAGCTATGTCACTAAGGTGCATTATCTCATTCGTTTTTATTCCTTTTTTTTTTAGCTATTGGTACTTAATATCAAAATTATATATGAACATTCTGTTCATGAATGCTCTCTTAACCACAATCAAATGTTCAAACCTACATCTATAGGTTGGGCTTATGATTTTGGATGAGATTCATTTACTTGGAGCTGATCGAGGACCCATACTTGAGGTACATAGCTGTCACTGAATGTCTCCCATTCTCTTCTCCCTTTCAATGGTCATTGGTTTATTGATTATATTGTAATCTCTTGATTATGTCTAATGCTAGATTTTTCTGGTTCTAGGTTATTGTCTCAAGGATGAGATATATATCTTCTCAAACAGAGCGGCCAGTTCGGTTTGTTGGCCTGTCAACAGCATTAGCAAATGCACAGTATGTGTTTCATTGTATCTATATTTCTTGCTTGTGTTGTGTGCAAAAATGCTAATTGGTTTTGTGTAGTTTTTTCTCTATAGATTGTTTTGGTACCACCTTTTATCTTGGTAACTTTTAAATGAAATTCTTACATTTGTCCTTGAAACCAGCAATTTGGCTGATTGGTTGGGTGTCGATGAAACTGGCCTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTTCCTCTTGAAGTTCATATTCAGGCAAGTGAAGCAGTATATGAGCTACCCAAGTGCCATCATCATCGAAGCATACTGAAGTATATTTACCTATAGTAATCATGCTTTAATCTTGATTTATAAGTCGTTTCTTTTAACAGGGATATCCTGGAAAGTTTTACTGCCCGAGGATGAATAGTATGAACAAGCCCACATATGCTGCTATATGTACACATTCACCAAC</genome_strand>
        <mrna_strand>CCGATATGAAGGTTATCTATATAGCACCTTTAAAGGCTATTGTTCGGGAGAGAATGACGGACTGGAGAAAACGTCTTGTTTCCCAACTTGGAAAGAAGATG.................................................................................GTTGAAATGACTGGTGACTACACCCCGGATCTAATGGCTCTCTTGTCAGCAGACATCATAATCTCCACTCCTGAAAAGTGGGATGGTATTAGTCGCAATTGGCATAGTCGAAGCTATGTCACTAAG..................................................................................................................................GTTGGGCTTATGATTTTGGATGAGATTCATTTACTTGGAGCTGATCGAGGACCCATACTTGAG...................................................................................................................GTTATTGTCTCAAGGATGAGATATATATCTTCTCAAACAGAGCGGCCAGTTCGGTTTGTTGGCCTGTCAACAGCATTAGCAAATGCACA........................................................................................................................................................CAATTTGGCTGATTGGTTGGGTGTCGATGAAACTGGCCTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTTCCTCTTGAAGTTCATATTCAG....................................................................................................................GGATATCCTGGAAAGTTTTACTGCCCGAGGATGAATAGTATGAACAAGCCCACATATGCTGCTATATGTACACATTCACCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424897" ref_strand="+" ref_description="SGN-E424897 [STM-44-C6]">
      <seq>gaacaagcccacatatgctgctatatgtacacattcaccaacaaaaccagttctaatctttgtctcctctcgtcgccaaacaaggcttacagcactggaccttattcagtttgcggcttcagatgagcacccaaggcagttcataagcatgccagaagattcacttcagatggttctttctcaagtcacagaccagaacttgaagcacaccttacaatttggaattggattacaccatgccgggctgaatgataaagacagatcattggttgaggaactgtttgcaaacaacaagatccaggcaactatgtcatcctgaaatttgtatatctgtaggagtaataatatgatgaaattggaaattatatttgagtcattttggctgcatctttttaggtgttggtttgtacaagtacgttagcatggggtgtaaaccttcctgcacatttggttgttattaagggaacagagttttatgatgggaaggcaaaaagatatggtgatttcccaatcactgatatattacaaatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32147" stop="34017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32447" g_stop="32555" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32556" i_stop="32645" i_length="90">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32646" g_stop="32998" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="462" r_length="353" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32999" i_stop="33644" i_length="646">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33645" g_stop="33717" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="535" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E424897" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32447" e_stop="32555"/>
          <exon e_start="32646" e_stop="32998"/>
          <exon e_start="33645" e_stop="33717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGCCCACATATGCTGCTATATGTACACATTCACCAACAAAACCAGTTCTAATCTTTGTCTCCTCTCGTCGCCAAACGAGGCTTACAGCACTGGACCTTATCCAGGTGAGGCAAAAATTCAAATTGTATCGATCAAAATATTTCTTTCGCATACTGATGGTAACTAATCTGTCATTTTTTTTCCTGATCTTGAAGTTTGCGGCTTCAGATGAGCACCCAAGGCAGTTCATAAGCATGCCAGAAGATTCACTTCAAATGGTTCTTTCTCAAGTCACAGACCAGAACTTGAAGCACACTTTACAATTTGGAATTGGATTACACCATGCCGGGCTGAATGATAAAGACAGATCATTGGTTGAGGAACTGTTTGCAAACAACAAGATCCAGGCAACTATGTCATCCTGAAATTTGTAGATCTGTAGGAGTAATAATATGATGAAATTGGAAATTACATTTGAGTCATTTTGGCTGCATCTTTTTAGGTGTTGGTTTGTACAAGTACGTTAGCATGGGGTGTAAACCTTCCTGCACATTTGGTTGTTATTAAGGTATGTCGTTTTATCCACCTTCAAGAATTAGGTCAAAGACTGGAATGTTATAATATCATCTCCCACTGGAAGGCACTCATACCATGGGCTAATTGTCATCTTTGTTTGTTACATCACACTTTTAATGTGTTACTGGATCATGTGATATTTTACTGGTTTAAGTTTGGTTTAATCCATTTTTTACCAACAAATTGAGTCCCTTAGATGTTATTATTTGTAACTAGAGTTTTGAAGATTATTTGAAGTTGCTAGATACCTTTTCCTTTTATTATTTATGTTTGGAAAATACTCCAAAAAAAATCGATCTTGCCCCCAAATCTTCTTCAAGCTAGCACTTCCCTTTCCTTGTCTTTAGAGTGGGGTCATTAAAACACAAGTGGTATCACTCTGGTTCATGCAAAATATTTTGGGTATTCTTTTTGTGAAGTTCTTCTATCTGTCATCTTGTTGCTGTAGGTAAATTATTAAGTTTTCCTTTCTCTCGAAGTAATAAATTAAATACATATATTTCTTCGCCTTGCATTCTTTCGATGAGTTTAATCTGCTCATCGTAACAAATACTGTGTCCTTCTTGATGACTGTCAAAATTCATCACCTCAGGATACGCACCATCTTTGCTGTTTAAAATATGTAGATCCTTCTGCAGGGAACAGAGTTTTATGATGGGAAAGCAAAAAGATATGTTGATTTCCCAATCACTGATATATTACAAATGATGG</genome_strand>
        <mrna_strand>GAACAAGCCCACATATGCTGCTATATGTACACATTCACCAACAAAACCAGTTCTAATCTTTGTCTCCTCTCGTCGCCAAACAAGGCTTACAGCACTGGACCTTATTCAG..........................................................................................TTTGCGGCTTCAGATGAGCACCCAAGGCAGTTCATAAGCATGCCAGAAGATTCACTTCAGATGGTTCTTTCTCAAGTCACAGACCAGAACTTGAAGCACACCTTACAATTTGGAATTGGATTACACCATGCCGGGCTGAATGATAAAGACAGATCATTGGTTGAGGAACTGTTTGCAAACAACAAGATCCAGGCAACTATGTCATCCTGAAATTTGTATATCTGTAGGAGTAATAATATGATGAAATTGGAAATTATATTTGAGTCATTTTGGCTGCATCTTTTTAGGTGTTGGTTTGTACAAGTACGTTAGCATGGGGTGTAAACCTTCCTGCACATTTGGTTGTTATTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGAGTTTTATGATGGGAAGGCAAAAAGATATGGTGATTTCCCAATCACTGATATATTACAAATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453437" ref_strand="+" ref_description="SGN-E453437 [cSTS-20-A9]">
      <seq>caaaaccagttctaatctttgtctcctctcgtcgccaaacaaggcttacagcactggaccttattcagtttgcggcttcagatgagcacccaaggcagttcataagcatgccagaagattcacttcagatggttctttctcaagtcacagaccagaacttgaagcacaccttacaatttggaattggattacaccatgccgggctgaatgataaagacagatcattggttgaggaactgtttgcaaacaacaagatccaggcaactatgtcatcctgaaatttgtatatctgtaggagtaataatatgatgaaattggaaattatatttgagtcattttggctgcatctttttaggtgttggtttgtacaagtacgttagcatggggtgtaaaccttcctgcacatttggttgttattaagggaacagagttttatgatgggaaggcaaaaagatatgttgatttcccaatcactgatatattacaaatgatgggtcgagctggntcgtccacaatatgatcaacacgggaaagctgttattcttgttcatgaacccaaaaagagcttttataaaaagtttctatatgaaccattcccagtttgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32188" stop="34248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32488" g_stop="32555" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32556" i_stop="32645" i_length="90">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32646" g_stop="32998" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="421" r_length="353" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32999" i_stop="33644" i_length="646">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33645" g_stop="33800" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="578" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33801" i_stop="33918" i_length="118">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33919" g_stop="33948" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="609" r_length="31" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E453437" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32488" e_stop="32555"/>
          <exon e_start="32646" e_stop="32998"/>
          <exon e_start="33645" e_stop="33800"/>
          <exon e_start="33919" e_stop="33948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCAGTTCTAATCTTTGTCTCCTCTCGTCGCCAAACGAGGCTTACAGCACTGGACCTTATCCAGGTGAGGCAAAAATTCAAATTGTATCGATCAAAATATTTCTTTCGCATACTGATGGTAACTAATCTGTCATTTTTTTTCCTGATCTTGAAGTTTGCGGCTTCAGATGAGCACCCAAGGCAGTTCATAAGCATGCCAGAAGATTCACTTCAAATGGTTCTTTCTCAAGTCACAGACCAGAACTTGAAGCACACTTTACAATTTGGAATTGGATTACACCATGCCGGGCTGAATGATAAAGACAGATCATTGGTTGAGGAACTGTTTGCAAACAACAAGATCCAGGCAACTATGTCATCCTGAAATTTGTAGATCTGTAGGAGTAATAATATGATGAAATTGGAAATTACATTTGAGTCATTTTGGCTGCATCTTTTTAGGTGTTGGTTTGTACAAGTACGTTAGCATGGGGTGTAAACCTTCCTGCACATTTGGTTGTTATTAAGGTATGTCGTTTTATCCACCTTCAAGAATTAGGTCAAAGACTGGAATGTTATAATATCATCTCCCACTGGAAGGCACTCATACCATGGGCTAATTGTCATCTTTGTTTGTTACATCACACTTTTAATGTGTTACTGGATCATGTGATATTTTACTGGTTTAAGTTTGGTTTAATCCATTTTTTACCAACAAATTGAGTCCCTTAGATGTTATTATTTGTAACTAGAGTTTTGAAGATTATTTGAAGTTGCTAGATACCTTTTCCTTTTATTATTTATGTTTGGAAAATACTCCAAAAAAAATCGATCTTGCCCCCAAATCTTCTTCAAGCTAGCACTTCCCTTTCCTTGTCTTTAGAGTGGGGTCATTAAAACACAAGTGGTATCACTCTGGTTCATGCAAAATATTTTGGGTATTCTTTTTGTGAAGTTCTTCTATCTGTCATCTTGTTGCTGTAGGTAAATTATTAAGTTTTCCTTTCTCTCGAAGTAATAAATTAAATACATATATTTCTTCGCCTTGCATTCTTTCGATGAGTTTAATCTGCTCATCGTAACAAATACTGTGTCCTTCTTGATGACTGTCAAAATTCATCACCTCAGGATACGCACCATCTTTGCTGTTTAAAATATGTAGATCCTTCTGCAGGGAACAGAGTTTTATGATGGGAAAGCAAAAAGATATGTTGATTTCCCAATCACTGATATATTACAAATGATGGGTCGAGCTGG-TCGTCCACAATATGATCAACATGGGAAAGCTGTTATTCTTGTTCATGAACCCAAGAAGAGCTTTTATAAAAAGGTTATCTATAATTCTTTTCTTTGAACATGACTGTACTGTTGCTTTTCCTTTACTTTGATTATCTAAGTAACTATTATATTCTATTTTATTATTCAACATTTATGCTTTCTTTTTGCAGTTTCTATATGAACCATTCCCAG-TTGAAAGT</genome_strand>
        <mrna_strand>CAAAACCAGTTCTAATCTTTGTCTCCTCTCGTCGCCAAACAAGGCTTACAGCACTGGACCTTATTCAG..........................................................................................TTTGCGGCTTCAGATGAGCACCCAAGGCAGTTCATAAGCATGCCAGAAGATTCACTTCAGATGGTTCTTTCTCAAGTCACAGACCAGAACTTGAAGCACACCTTACAATTTGGAATTGGATTACACCATGCCGGGCTGAATGATAAAGACAGATCATTGGTTGAGGAACTGTTTGCAAACAACAAGATCCAGGCAACTATGTCATCCTGAAATTTGTATATCTGTAGGAGTAATAATATGATGAAATTGGAAATTATATTTGAGTCATTTTGGCTGCATCTTTTTAGGTGTTGGTTTGTACAAGTACGTTAGCATGGGGTGTAAACCTTCCTGCACATTTGGTTGTTATTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGAGTTTTATGATGGGAAGGCAAAAAGATATGTTGATTTCCCAATCACTGATATATTACAAATGATGGGTCGAGCTGGNTCGTCCACAATATGATCAACACGGGAAAGCTGTTATTCTTGTTCATGAACCCAAAAAGAGCTTTTATAAAAAG......................................................................................................................TTTCTATATGAACCATTCCCAGTTTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423075" ref_strand="+" ref_description="SGN-E423075 [STM-41-B1]">
      <seq>gttgaaagtagtctgagagagcaactgcatgaccacatcaacgctgagattgttactggaacaatatctcataaagaggatgctgtgcattatctcacttggacttacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcagaacctgggattctaaattcttatttgtctagcttggtgcaaagcacatttgaggatctagaagacagtggatgcatcaagattactgaggacagtgttgaaccactgatgttgggctcaatagcatctcagtattatctgaagtacaccactgtatcaatgtttggctcaaaaataggatctgatacatcacttgaggctttccttcaaatactgtctggtgcttctgaatacgatgagctcccggtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtcgaccacaatcgcctggatgatcctcatgtgaaagcaaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctggatcaaagtatacgtgttatccaggctatgatagatatttgtgccaacagtgatggctctccagtaccattacctgtatgcatctgttgcaaatggtcatgcagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33640" stop="37276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33940" g_stop="34062" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34063" i_stop="35617" i_length="1555">
            <donor d_prob="0.308" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35618" g_stop="35685" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="191" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35686" i_stop="35763" i_length="78">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35764" g_stop="35929" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="357" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35930" i_stop="36031" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36032" g_stop="36094" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="420" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36095" i_stop="36443" i_length="349">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36444" g_stop="36539" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="516" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36540" i_stop="36805" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36806" g_stop="36973" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="683" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E423075" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33940" e_stop="34062"/>
          <exon e_start="35618" e_stop="35685"/>
          <exon e_start="35764" e_stop="35929"/>
          <exon e_start="36032" e_stop="36094"/>
          <exon e_start="36444" e_stop="36539"/>
          <exon e_start="36806" e_stop="36973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTGGTATGGTTTTGTGATCCTATGGCAGAGAATTTATTTTGTTGCTCCAAATTTATAGTCTTGCATTACCGATCAAGAAAAAATTTCAATCTTGCAGCAATGGCAATGCTAAGTTAGGAACCACCATCATTATATTAAGAGTGCTTGATGCATGTTTTTCTTTCAGCAAGTAATCATCAGTAATAAGTAGGTTACTTGGTTGCTGATTGATATGGGTTACTCATTTAAGGTAAATATATTAATATGAAATTTCTAAAGAAGATGTAGGTAACTAAGTTGTGTCTCCTACAGTGAAGAACATATAAATGGAAATCCAGTAAAGGAAATGAGTCCTTTATAATAAGGTAACACGGGAGATTTATGAGTTGATTAATTTAGCTTGCAAAAAGAAAAGTTAAGGGAGGCCACAATAGTGCAACCTTGTTCTGATTTTATCTTGCTTATGTTATCTTTTCCGGAAGTCTCAAATTTTATTTTCTAAGTAAGCATTACCAACATGTGACAACTGAAACTGGAAAAAGAAAGTGGTAGGTAAAGGGCTAATTTCAGTTGTACCATAGTGATCTTTATGGTAACATGATTTGTTTCAGATTGTGGTGGACTCCAAAATCTATATTATTGTAATCAACTAGCAGACAAAGGGAACACACTTCAGGCAGCAGCTAAAGTTGCACAAGAAAATATGTGTCTGTTTGATGTGCTTTTACAAGCTTACTGCTGCTAGATACCATCAAAGCATTTTCTATGAAAAAAGTTGGGAGAAAGTGAGGTCTACCCCACGTACCAAAGTCTTGTCAAAGTGCAAGTTGAAATAGCTCGTCAGCTTTAACCAGACCCTAAGGGATAGGAATAGCTAATCCACAAATTATGTGTAGTAATTATCTAACTTGATTGACCCTTGTTTATTTATGTAACATAAGATTATTTTAGATTCAAAATGAGAGAGCTGATTTAAAGCAATAACAATCAGCATTGAGTGGTAAAACAATGGTTTGCTTATGCTATTCATTGTATCCTTCCGCCCCAACAAATGTAGTGCCAACTGTAGGTGTTGATGTTGCATGTGTATTATTTTCCACCTTGTGGGAAAGAACAAAAGAAAAGTTACATTTCTGTGTACTGCCTGTATAGATGCCTTTTATATAGTGAATAATTGATCTATGGGTTAGTCACAATAGGGAATAATTGGTTATTCCGTGGTTCAAATGGAATTCTTGCCCTAGTGGCAAGGTCCCTCCACCTCCAGTCACTAATATGTGGTTCGGGACACTCAGAGGGAAAAGTAGGCGAGCACTGTTTCTCCTGGGAAGGGGAAGCATTGAGGTAAAGAAGGATGTTACCAATTTAAAAAAAAAAAAAAAGATAAAGGAGGAGATGATATGTCACCTAAATGAAAAGGATGAGAAGAAAGTCAATTTTCACCTCAATCTACTAATGTATTTCTGTGGATTGACAATGTCATCAAAGAAAATCTTATATGTTTGAAGAATTACCAAAAATAGTGTACTGTTCTTTCCCTGCTAGTTATTATGTTTATTAACCATAGAAGTTTTTGCAGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAGGTAAAATGAAAGCACTACATAGTCTTGAAATAGCTTTTCTTGTATATTTCTGTGTGTGCTCACATTATTTATGAACAGCTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAGGTTTGTAGAACACCTAACATGGATGTCTAATCCTTATTTCTCTATTTCAATGTTTTTAAATTATATTTCTTGGCATTACTTCCTATTTATCTTTCACCCCAGGTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAGGTAATTTTTTTAGCTAGGCAATATATATATATATATATATATATATATATATATTTGAAGACAGTTGTTGCTGAACAATGGTTTGTTGGTTTTCAACTCTCTTAATTTCTTTACTTTTTTCCCTTAGTTGTATATTACTTGCTAGTTCTAACTAGTAAACCAATAACATTGATGTCCTGGCATTACACCAATTGTTGCAGACACTTCTGAATTATTGTCTGCAAATCTAAATTAGTATCGATAATTCCGCTAAGAAATTGCCTGGATTTTGAAACTATCAAACTATGCATCAACTACTTCTTTATTTGTATGTTGTACACATCATCTGCTTATTGATCACCTATTCCAGGAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG</genome_strand>
        <mrna_strand>GTTGAAAGTAGTCTGAGAGAGCAACTGCATGACCACATCAACGCTGAGATTGTTACTGGAACAATATCTCATAAAGAGGATGCTGTGCATTATCTCACTTGGACTTACTTGTTTCGTAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG..............................................................................CTTGGTGCAAAGCACATTTGAGGATCTAGAAGACAGTGGATGCATCAAGATTACTGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG......................................................................................................GCTTTCCTTCAAATACTGTCTGGTGCTTCTGAATACGATGAGCTCCCGGTGAGGCATAATGAG.............................................................................................................................................................................................................................................................................................................................................................GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGT-GATGGCTCTCCAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449686" ref_strand="+" ref_description="SGN-E449686 [cSTS-7-A6]">
      <seq>gttgaaagtagtctgagagagcaactgcatgaccacatcaacgctgagattgttactggaaccatatctcataaagaggctgctgtgcattatctcacttggacttacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcagaacctgggattctaaattcttatttgtctagcttggtgcaaagcacaatttgaggatctagaaaacagtggatgcatcaagaatactgaggacagtgttgaaccactgatgttgggctcaatagcatctcagtattatctgaagtacaccactgtatcaatgtttggctcaaaaataggatctgatacatcacttgaggctttccttcaaatactgtctggtgcttctgaatacgatgagctcccggtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtcgaccacaatcgcctggatgatcctcatgtgaaagcaaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33640" stop="37169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33940" g_stop="34062" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34063" i_stop="35617" i_length="1555">
            <donor d_prob="0.308" d_score="0.92"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35618" g_stop="35685" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="191" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35686" i_stop="35763" i_length="78">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35764" g_stop="35929" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="358" r_length="167" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35930" i_stop="36031" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36032" g_stop="36094" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="421" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36095" i_stop="36443" i_length="349">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36444" g_stop="36539" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="517" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36540" i_stop="36805" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36806" g_stop="36869" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="581" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E449686" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33940" e_stop="34062"/>
          <exon e_start="35618" e_stop="35685"/>
          <exon e_start="35764" e_stop="35929"/>
          <exon e_start="36032" e_stop="36094"/>
          <exon e_start="36444" e_stop="36539"/>
          <exon e_start="36806" e_stop="36869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTGGTATGGTTTTGTGATCCTATGGCAGAGAATTTATTTTGTTGCTCCAAATTTATAGTCTTGCATTACCGATCAAGAAAAAATTTCAATCTTGCAGCAATGGCAATGCTAAGTTAGGAACCACCATCATTATATTAAGAGTGCTTGATGCATGTTTTTCTTTCAGCAAGTAATCATCAGTAATAAGTAGGTTACTTGGTTGCTGATTGATATGGGTTACTCATTTAAGGTAAATATATTAATATGAAATTTCTAAAGAAGATGTAGGTAACTAAGTTGTGTCTCCTACAGTGAAGAACATATAAATGGAAATCCAGTAAAGGAAATGAGTCCTTTATAATAAGGTAACACGGGAGATTTATGAGTTGATTAATTTAGCTTGCAAAAAGAAAAGTTAAGGGAGGCCACAATAGTGCAACCTTGTTCTGATTTTATCTTGCTTATGTTATCTTTTCCGGAAGTCTCAAATTTTATTTTCTAAGTAAGCATTACCAACATGTGACAACTGAAACTGGAAAAAGAAAGTGGTAGGTAAAGGGCTAATTTCAGTTGTACCATAGTGATCTTTATGGTAACATGATTTGTTTCAGATTGTGGTGGACTCCAAAATCTATATTATTGTAATCAACTAGCAGACAAAGGGAACACACTTCAGGCAGCAGCTAAAGTTGCACAAGAAAATATGTGTCTGTTTGATGTGCTTTTACAAGCTTACTGCTGCTAGATACCATCAAAGCATTTTCTATGAAAAAAGTTGGGAGAAAGTGAGGTCTACCCCACGTACCAAAGTCTTGTCAAAGTGCAAGTTGAAATAGCTCGTCAGCTTTAACCAGACCCTAAGGGATAGGAATAGCTAATCCACAAATTATGTGTAGTAATTATCTAACTTGATTGACCCTTGTTTATTTATGTAACATAAGATTATTTTAGATTCAAAATGAGAGAGCTGATTTAAAGCAATAACAATCAGCATTGAGTGGTAAAACAATGGTTTGCTTATGCTATTCATTGTATCCTTCCGCCCCAACAAATGTAGTGCCAACTGTAGGTGTTGATGTTGCATGTGTATTATTTTCCACCTTGTGGGAAAGAACAAAAGAAAAGTTACATTTCTGTGTACTGCCTGTATAGATGCCTTTTATATAGTGAATAATTGATCTATGGGTTAGTCACAATAGGGAATAATTGGTTATTCCGTGGTTCAAATGGAATTCTTGCCCTAGTGGCAAGGTCCCTCCACCTCCAGTCACTAATATGTGGTTCGGGACACTCAGAGGGAAAAGTAGGCGAGCACTGTTTCTCCTGGGAAGGGGAAGCATTGAGGTAAAGAAGGATGTTACCAATTTAAAAAAAAAAAAAAAGATAAAGGAGGAGATGATATGTCACCTAAATGAAAAGGATGAGAAGAAAGTCAATTTTCACCTCAATCTACTAATGTATTTCTGTGGATTGACAATGTCATCAAAGAAAATCTTATATGTTTGAAGAATTACCAAAAATAGTGTACTGTTCTTTCCCTGCTAGTTATTATGTTTATTAACCATAGAAGTTTTTGCAGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAGGTAAAATGAAAGCACTACATAGTCTTGAAATAGCTTTTCTTGTATATTTCTGTGTGTGCTCACATTATTTATGAACAGCTTGGTGCAAAGCAC-ATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAGGTTTGTAGAACACCTAACATGGATGTCTAATCCTTATTTCTCTATTTCAATGTTTTTAAATTATATTTCTTGGCATTACTTCCTATTTATCTTTCACCCCAGGTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAGGTAATTTTTTTAGCTAGGCAATATATATATATATATATATATATATATATATATTTGAAGACAGTTGTTGCTGAACAATGGTTTGTTGGTTTTCAACTCTCTTAATTTCTTTACTTTTTTCCCTTAGTTGTATATTACTTGCTAGTTCTAACTAGTAAACCAATAACATTGATGTCCTGGCATTACACCAATTGTTGCAGACACTTCTGAATTATTGTCTGCAAATCTAAATTAGTATCGATAATTCCGCTAAGAAATTGCCTGGATTTTGAAACTATCAAACTATGCATCAACTACTTCTTTATTTGTATGTTGTACACATCATCTGCTTATTGATCACCTATTCCAGGAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGG</genome_strand>
        <mrna_strand>GTTGAAAGTAGTCTGAGAGAGCAACTGCATGACCACATCAACGCTGAGATTGTTACTGGAACCATATCTCATAAAGAGGCTGCTGTGCATTATCTCACTTGGACTTACTTGTTTCGTAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG..............................................................................CTTGGTGCAAAGCACAATTTGAGGATCTAGAAAACAGTGGATGCATCAAGAATACTGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG......................................................................................................GCTTTCCTTCAAATACTGTCTGGTGCTTCTGAATACGATGAGCTCCCGGTGAGGCATAATGAG.............................................................................................................................................................................................................................................................................................................................................................GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394239" ref_strand="+" ref_description="SGN-E394239 [TUS-14-E5]">
      <seq>tcgtaagtagcctgagagagcaacttcatgaccacatcaacgctgagattgttactggaacaatctctcataaagaggacgctatgcattatctcacttggacctacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcaaatcctgcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33640" stop="35965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33941" g_stop="34062" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34063" i_stop="35617" i_length="1555">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35618" g_stop="35665" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="170" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E394239" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33941" e_stop="34062"/>
          <exon e_start="35618" e_stop="35665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTGGTATGGTTTTGTGATCCTATGGCAGAGAATTTATTTTGTTGCTCCAAATTTATAGTCTTGCATTACCGATCAAGAAAAAATTTCAATCTTGCAGCAATGGCAATGCTAAGTTAGGAACCACCATCATTATATTAAGAGTGCTTGATGCATGTTTTTCTTTCAGCAAGTAATCATCAGTAATAAGTAGGTTACTTGGTTGCTGATTGATATGGGTTACTCATTTAAGGTAAATATATTAATATGAAATTTCTAAAGAAGATGTAGGTAACTAAGTTGTGTCTCCTACAGTGAAGAACATATAAATGGAAATCCAGTAAAGGAAATGAGTCCTTTATAATAAGGTAACACGGGAGATTTATGAGTTGATTAATTTAGCTTGCAAAAAGAAAAGTTAAGGGAGGCCACAATAGTGCAACCTTGTTCTGATTTTATCTTGCTTATGTTATCTTTTCCGGAAGTCTCAAATTTTATTTTCTAAGTAAGCATTACCAACATGTGACAACTGAAACTGGAAAAAGAAAGTGGTAGGTAAAGGGCTAATTTCAGTTGTACCATAGTGATCTTTATGGTAACATGATTTGTTTCAGATTGTGGTGGACTCCAAAATCTATATTATTGTAATCAACTAGCAGACAAAGGGAACACACTTCAGGCAGCAGCTAAAGTTGCACAAGAAAATATGTGTCTGTTTGATGTGCTTTTACAAGCTTACTGCTGCTAGATACCATCAAAGCATTTTCTATGAAAAAAGTTGGGAGAAAGTGAGGTCTACCCCACGTACCAAAGTCTTGTCAAAGTGCAAGTTGAAATAGCTCGTCAGCTTTAACCAGACCCTAAGGGATAGGAATAGCTAATCCACAAATTATGTGTAGTAATTATCTAACTTGATTGACCCTTGTTTATTTATGTAACATAAGATTATTTTAGATTCAAAATGAGAGAGCTGATTTAAAGCAATAACAATCAGCATTGAGTGGTAAAACAATGGTTTGCTTATGCTATTCATTGTATCCTTCCGCCCCAACAAATGTAGTGCCAACTGTAGGTGTTGATGTTGCATGTGTATTATTTTCCACCTTGTGGGAAAGAACAAAAGAAAAGTTACATTTCTGTGTACTGCCTGTATAGATGCCTTTTATATAGTGAATAATTGATCTATGGGTTAGTCACAATAGGGAATAATTGGTTATTCCGTGGTTCAAATGGAATTCTTGCCCTAGTGGCAAGGTCCCTCCACCTCCAGTCACTAATATGTGGTTCGGGACACTCAGAGGGAAAAGTAGGCGAGCACTGTTTCTCCTGGGAAGGGGAAGCATTGAGGTAAAGAAGGATGTTACCAATTTAAAAAAAAAAAAAAAGATAAAGGAGGAGATGATATGTCACCTAAATGAAAAGGATGAGAAGAAAGTCAATTTTCACCTCAATCTACTAATGTATTTCTGTGGATTGACAATGTCATCAAAGAAAATCTTATATGTTTGAAGAATTACCAAAAATAGTGTACTGTTCTTTCCCTGCTAGTTATTATGTTTATTAACCATAGAAGTTTTTGCAGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATT</genome_strand>
        <mrna_strand>TCGTAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAAATCCTGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202556" ref_strand="+" ref_description="SGN-E202556 [cLEC-6-H12]">
      <seq>tgaaagtagcctgagagagcaacttcatgaccacatcaacgctgagattgttactggaacaatctctcataaagaggacgctatgcattatctcacttggacctacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcagaacctgggattctaaattcttatttgtctagcttggtgcaaagcacatttgaggatcttgaagactctggatgcatcaaggttaccgaggacagtgttgaaccactgatgttgggctcaatagcatctcagtattatctgaagtacaccactgtatcaatgtttggctcaaaaataggatctgatacatcacttgaggttttcctacaaatactgtctggtgcttctgaatatgatgagctcccggtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtcgaccacaatcgcctggatgatcctcatgtgaaagcaaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33642" stop="37155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33942" g_stop="34062" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34063" i_stop="35617" i_length="1555">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35618" g_stop="35685" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="189" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35686" i_stop="35763" i_length="78">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35764" g_stop="35929" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="355" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35930" i_stop="36031" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36032" g_stop="36094" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36095" i_stop="36443" i_length="349">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36444" g_stop="36539" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="514" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36540" i_stop="36805" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36806" g_stop="36855" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="564" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E202556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33942" e_stop="34062"/>
          <exon e_start="35618" e_stop="35685"/>
          <exon e_start="35764" e_stop="35929"/>
          <exon e_start="36032" e_stop="36094"/>
          <exon e_start="36444" e_stop="36539"/>
          <exon e_start="36806" e_stop="36855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTGGTATGGTTTTGTGATCCTATGGCAGAGAATTTATTTTGTTGCTCCAAATTTATAGTCTTGCATTACCGATCAAGAAAAAATTTCAATCTTGCAGCAATGGCAATGCTAAGTTAGGAACCACCATCATTATATTAAGAGTGCTTGATGCATGTTTTTCTTTCAGCAAGTAATCATCAGTAATAAGTAGGTTACTTGGTTGCTGATTGATATGGGTTACTCATTTAAGGTAAATATATTAATATGAAATTTCTAAAGAAGATGTAGGTAACTAAGTTGTGTCTCCTACAGTGAAGAACATATAAATGGAAATCCAGTAAAGGAAATGAGTCCTTTATAATAAGGTAACACGGGAGATTTATGAGTTGATTAATTTAGCTTGCAAAAAGAAAAGTTAAGGGAGGCCACAATAGTGCAACCTTGTTCTGATTTTATCTTGCTTATGTTATCTTTTCCGGAAGTCTCAAATTTTATTTTCTAAGTAAGCATTACCAACATGTGACAACTGAAACTGGAAAAAGAAAGTGGTAGGTAAAGGGCTAATTTCAGTTGTACCATAGTGATCTTTATGGTAACATGATTTGTTTCAGATTGTGGTGGACTCCAAAATCTATATTATTGTAATCAACTAGCAGACAAAGGGAACACACTTCAGGCAGCAGCTAAAGTTGCACAAGAAAATATGTGTCTGTTTGATGTGCTTTTACAAGCTTACTGCTGCTAGATACCATCAAAGCATTTTCTATGAAAAAAGTTGGGAGAAAGTGAGGTCTACCCCACGTACCAAAGTCTTGTCAAAGTGCAAGTTGAAATAGCTCGTCAGCTTTAACCAGACCCTAAGGGATAGGAATAGCTAATCCACAAATTATGTGTAGTAATTATCTAACTTGATTGACCCTTGTTTATTTATGTAACATAAGATTATTTTAGATTCAAAATGAGAGAGCTGATTTAAAGCAATAACAATCAGCATTGAGTGGTAAAACAATGGTTTGCTTATGCTATTCATTGTATCCTTCCGCCCCAACAAATGTAGTGCCAACTGTAGGTGTTGATGTTGCATGTGTATTATTTTCCACCTTGTGGGAAAGAACAAAAGAAAAGTTACATTTCTGTGTACTGCCTGTATAGATGCCTTTTATATAGTGAATAATTGATCTATGGGTTAGTCACAATAGGGAATAATTGGTTATTCCGTGGTTCAAATGGAATTCTTGCCCTAGTGGCAAGGTCCCTCCACCTCCAGTCACTAATATGTGGTTCGGGACACTCAGAGGGAAAAGTAGGCGAGCACTGTTTCTCCTGGGAAGGGGAAGCATTGAGGTAAAGAAGGATGTTACCAATTTAAAAAAAAAAAAAAAGATAAAGGAGGAGATGATATGTCACCTAAATGAAAAGGATGAGAAGAAAGTCAATTTTCACCTCAATCTACTAATGTATTTCTGTGGATTGACAATGTCATCAAAGAAAATCTTATATGTTTGAAGAATTACCAAAAATAGTGTACTGTTCTTTCCCTGCTAGTTATTATGTTTATTAACCATAGAAGTTTTTGCAGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAGGTAAAATGAAAGCACTACATAGTCTTGAAATAGCTTTTCTTGTATATTTCTGTGTGTGCTCACATTATTTATGAACAGCTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAGGTTTGTAGAACACCTAACATGGATGTCTAATCCTTATTTCTCTATTTCAATGTTTTTAAATTATATTTCTTGGCATTACTTCCTATTTATCTTTCACCCCAGGTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAGGTAATTTTTTTAGCTAGGCAATATATATATATATATATATATATATATATATATTTGAAGACAGTTGTTGCTGAACAATGGTTTGTTGGTTTTCAACTCTCTTAATTTCTTTACTTTTTTCCCTTAGTTGTATATTACTTGCTAGTTCTAACTAGTAAACCAATAACATTGATGTCCTGGCATTACACCAATTGTTGCAGACACTTCTGAATTATTGTCTGCAAATCTAAATTAGTATCGATAATTCCGCTAAGAAATTGCCTGGATTTTGAAACTATCAAACTATGCATCAACTACTTCTTTATTTGTATGTTGTACACATCATCTGCTTATTGATCACCTATTCCAGGAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTT</genome_strand>
        <mrna_strand>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG..............................................................................CTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG......................................................................................................GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG.............................................................................................................................................................................................................................................................................................................................................................GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575184" ref_strand="+" ref_description="SGN-E575184 [34768]">
      <seq>gtgcattatctcacttggacttacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcagaacctgggattctaaattcttatttgtctagcttggtgcaaagcacatttgaggatctagaagatagtggatgcatcaagattactgaggacagtgttgaaccactgatgttgggctcaatggcatctcagtattatctgaagtacaccactgtatcaatgtttggctcaaaaataggatctgatacatcacttgaggttttcctgcaaatactgtctggtgcttctgaatacgatgagctcccggtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtcgaccacaatcgcctggatgatcctcacgtgaaagcaaatctgctctttcaaggctcattttttcccaatcagagttgccaatcagcgattaatgtccacaagactttaacagtctgtgctgggatccaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33725" stop="37177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34024" g_stop="34062" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34063" i_stop="35617" i_length="1555">
            <donor d_prob="0.308" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35618" g_stop="35685" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="107" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35686" i_stop="35763" i_length="78">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35764" g_stop="35929" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="273" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35930" i_stop="36031" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36032" g_stop="36094" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="336" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36095" i_stop="36443" i_length="349">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36444" g_stop="36539" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="433" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36540" i_stop="36805" i_length="266">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36806" g_stop="36842" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="471" r_length="38" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E575184" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34024" e_stop="34062"/>
          <exon e_start="35618" e_stop="35685"/>
          <exon e_start="35764" e_stop="35929"/>
          <exon e_start="36032" e_stop="36094"/>
          <exon e_start="36444" e_stop="36539"/>
          <exon e_start="36806" e_stop="36842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTGGTATGGTTTTGTGATCCTATGGCAGAGAATTTATTTTGTTGCTCCAAATTTATAGTCTTGCATTACCGATCAAGAAAAAATTTCAATCTTGCAGCAATGGCAATGCTAAGTTAGGAACCACCATCATTATATTAAGAGTGCTTGATGCATGTTTTTCTTTCAGCAAGTAATCATCAGTAATAAGTAGGTTACTTGGTTGCTGATTGATATGGGTTACTCATTTAAGGTAAATATATTAATATGAAATTTCTAAAGAAGATGTAGGTAACTAAGTTGTGTCTCCTACAGTGAAGAACATATAAATGGAAATCCAGTAAAGGAAATGAGTCCTTTATAATAAGGTAACACGGGAGATTTATGAGTTGATTAATTTAGCTTGCAAAAAGAAAAGTTAAGGGAGGCCACAATAGTGCAACCTTGTTCTGATTTTATCTTGCTTATGTTATCTTTTCCGGAAGTCTCAAATTTTATTTTCTAAGTAAGCATTACCAACATGTGACAACTGAAACTGGAAAAAGAAAGTGGTAGGTAAAGGGCTAATTTCAGTTGTACCATAGTGATCTTTATGGTAACATGATTTGTTTCAGATTGTGGTGGACTCCAAAATCTATATTATTGTAATCAACTAGCAGACAAAGGGAACACACTTCAGGCAGCAGCTAAAGTTGCACAAGAAAATATGTGTCTGTTTGATGTGCTTTTACAAGCTTACTGCTGCTAGATACCATCAAAGCATTTTCTATGAAAAAAGTTGGGAGAAAGTGAGGTCTACCCCACGTACCAAAGTCTTGTCAAAGTGCAAGTTGAAATAGCTCGTCAGCTTTAACCAGACCCTAAGGGATAGGAATAGCTAATCCACAAATTATGTGTAGTAATTATCTAACTTGATTGACCCTTGTTTATTTATGTAACATAAGATTATTTTAGATTCAAAATGAGAGAGCTGATTTAAAGCAATAACAATCAGCATTGAGTGGTAAAACAATGGTTTGCTTATGCTATTCATTGTATCCTTCCGCCCCAACAAATGTAGTGCCAACTGTAGGTGTTGATGTTGCATGTGTATTATTTTCCACCTTGTGGGAAAGAACAAAAGAAAAGTTACATTTCTGTGTACTGCCTGTATAGATGCCTTTTATATAGTGAATAATTGATCTATGGGTTAGTCACAATAGGGAATAATTGGTTATTCCGTGGTTCAAATGGAATTCTTGCCCTAGTGGCAAGGTCCCTCCACCTCCAGTCACTAATATGTGGTTCGGGACACTCAGAGGGAAAAGTAGGCGAGCACTGTTTCTCCTGGGAAGGGGAAGCATTGAGGTAAAGAAGGATGTTACCAATTTAAAAAAAAAAAAAAAGATAAAGGAGGAGATGATATGTCACCTAAATGAAAAGGATGAGAAGAAAGTCAATTTTCACCTCAATCTACTAATGTATTTCTGTGGATTGACAATGTCATCAAAGAAAATCTTATATGTTTGAAGAATTACCAAAAATAGTGTACTGTTCTTTCCCTGCTAGTTATTATGTTTATTAACCATAGAAGTTTTTGCAGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAGGTAAAATGAAAGCACTACATAGTCTTGAAATAGCTTTTCTTGTATATTTCTGTGTGTGCTCACATTATTTATGAACAGCTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAGGTTTGTAGAACACCTAACATGGATGTCTAATCCTTATTTCTCTATTTCAATGTTTTTAAATTATATTTCTTGGCATTACTTCCTATTTATCTTTCACCCCAGGTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAGGTAATTTTTTTAGCTAGGCAATATATATATATATATATATATATATATATATATTTGAAGACAGTTGTTGCTGAACAATGGTTTGTTGGTTTTCAACTCTCTTAATTTCTTTACTTTTTTCCCTTAGTTGTATATTACTTGCTAGTTCTAACTAGTAAACCAATAACATTGATGTCCTGGCATTACACCAATTGTTGCAGACACTTCTGAATTATTGTCTGCAAATCTAAATTAGTATCGATAATTCCGCTAAGAAATTGCCTGGATTTTGAAACTATCAAACTATGCATCAACTACTTCTTTATTTGTATGTTGTACACATCATCTGCTTATTGATCACCTATTCCAGGAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTC-AGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCA-TTTTTCCCAATCAGAGTTGCCAATCAGCGATT</genome_strand>
        <mrna_strand>GTGCATTATCTCACTTGGACTTACTTGTTTCGTAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG..............................................................................CTTGGTGCAAAGCACATTTGAGGATCTAGAAGATAGTGGATGCATCAAGATTACTGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATGGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG......................................................................................................GTTTTCCTGCAAATACTGTCTGGTGCTTCTGAATACGATGAGCTCCCGGTGAGGCATAATGAG.............................................................................................................................................................................................................................................................................................................................................................GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCACGTGAAAGCAAATCTGCTCTTTCAAG..........................................................................................................................................................................................................................................................................GCTCATTTTTTCCCAATCAGAGTTGCCAATCAGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312352" ref_strand="+" ref_description="SGN-E312352 [cTOA-5-D15]">
      <seq>tgaagtacaccactgtatcaatgtttggctcaaaaataggatctgatacatcacttgaggttttcctacaaatactgtctggtgcttctgaatatgatgagctcccggtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtcgaccacaatcgcctggatgatcctcatgtgaaagcaaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctggatcaaagtatacgtgttatccaggctatgatagatatttgtgccaacagtggatggctctcaagtaccattacctgtatgcatctgttgcaaatggtcatgcagggcttgtggtttgataaacactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35571" stop="39514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35871" g_stop="35929" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35930" i_stop="36031" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36032" g_stop="36094" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="122" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36095" i_stop="36443" i_length="349">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36444" g_stop="36539" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36540" i_stop="36805" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36806" g_stop="36973" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="386" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36974" i_stop="39135" i_length="2162">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39136" g_stop="39214" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="465" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E312352" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35871" e_stop="35929"/>
          <exon e_start="36032" e_stop="36094"/>
          <exon e_start="36444" e_stop="36539"/>
          <exon e_start="36806" e_stop="36973"/>
          <exon e_start="39136" e_stop="39214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAGGTTTGTAGAACACCTAACATGGATGTCTAATCCTTATTTCTCTATTTCAATGTTTTTAAATTATATTTCTTGGCATTACTTCCTATTTATCTTTCACCCCAGGTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAGGTAATTTTTTTAGCTAGGCAATATATATATATATATATATATATATATATATATTTGAAGACAGTTGTTGCTGAACAATGGTTTGTTGGTTTTCAACTCTCTTAATTTCTTTACTTTTTTCCCTTAGTTGTATATTACTTGCTAGTTCTAACTAGTAAACCAATAACATTGATGTCCTGGCATTACACCAATTGTTGCAGACACTTCTGAATTATTGTCTGCAAATCTAAATTAGTATCGATAATTCCGCTAAGAAATTGCCTGGATTTTGAAACTATCAAACTATGCATCAACTACTTCTTTATTTGTATGTTGTACACATCATCTGCTTATTGATCACCTATTCCAGGAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAA</genome_strand>
        <mrna_strand>TGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG......................................................................................................GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG.............................................................................................................................................................................................................................................................................................................................................................GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAAACACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270646" ref_strand="+" ref_description="SGN-E270646 [cLEM-6-K21]">
      <seq>tgtcgaccttaatcgcctggatgatcctggtgtgaaagcgaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctggatcaaagtatacgtgttatccaggctatgatagatatttgtgccaacagtggatggctctcaagtaccattacctgtatgcatctgttgcaaatggtcatgcagggcttgtggtttgatagagactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36185" stop="40704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36485" g_stop="36539" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36540" i_stop="36805" i_length="266">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36806" g_stop="36973" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="223" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36974" i_stop="39135" i_length="2162">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39136" g_stop="39306" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="394" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39307" i_stop="40251" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40252" g_stop="40401" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="544" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40402" i_stop="40466" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40467" g_stop="40476" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="554" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E270646" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36485" e_stop="36539"/>
          <exon e_start="36806" e_stop="36973"/>
          <exon e_start="39136" e_stop="39306"/>
          <exon e_start="40252" e_stop="40401"/>
          <exon e_start="40467" e_stop="40476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATG</genome_strand>
        <mrna_strand>TGTCGACCTTAATCGCCTGGATGATCCTGGTGTGAAAGCGAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353001" ref_strand="+" ref_description="SGN-E353001 [cTOS-14-G6]">
      <seq>gcaaatggtcatgcagggcttgtggtttgatagagactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatacttccgcaagtgaactgtatgctctgaagagagtgtctttctctggtcgtttgcagacacacatggatttgccatccactctgaccaatttccaggggataaagctcattctagtatcggattcttacattgggttttgaacaagaacactctattgaaggattgacttaatctggaagaaactataccaactccagattgtaatgcaatgctcccaaaatcaggatttgactttgtatagcacaaaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36658" stop="41462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36958" g_stop="36973" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36974" i_stop="39135" i_length="2162">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39136" g_stop="39306" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="187" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39307" i_stop="40251" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40252" g_stop="40401" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="337" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40402" i_stop="40466" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40467" g_stop="40598" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="469" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40599" i_stop="41006" i_length="408">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41007" g_stop="41162" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="626" r_length="157" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E353001" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36958" e_stop="36973"/>
          <exon e_start="39136" e_stop="39306"/>
          <exon e_start="40252" e_stop="40401"/>
          <exon e_start="40467" e_stop="40598"/>
          <exon e_start="41007" e_stop="41162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAGGTTGATATCTGATGATATTGTATATACATATACTTATTTGGTATTAAACTTAACCTGACATTTTTTTGTACACCAGTTAGCTGGTGTTTCCCCCTCTTCTAGATGAATCAGTGTCCCAGTAGCAGTCATTTTCTTTTTATGATGGTCTCTGAGAAATTAAACACCTACTCTCCCCCAGCACACACACACAAACAAACAAAATTAAATTAAAAATAGAAGTTAATAACAGATCAGCTTTTAGAAGATAGAGTATGACATATTTGTCTTCTTATCTTGGAGTCAAGATTCAGTCCTCCCAGCTACCCACCCACTCCAGGAAGGGGAAAAAAACATGTTTTCATTCTGTGCATGTAAAAGATGTTACACCTTCTATGTTGGGACTGAAAAGTTGAGATGTTTCTATTTCAGGGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGG-TTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTC</genome_strand>
        <mrna_strand>GCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354914" ref_strand="+" ref_description="SGN-E354914 [cTOS-19-G19]">
      <seq>gcaaatggtcatgcagggcttgtggtttgatagagactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatacttccgcaagtgaactgtatgctctgaagagagtgtctttctctggtcgtttgcagacacacatggatttgccatccactctgaccaatttccaggggataaagctcattctagtatcggattcttacattgggtttgaacaagaacactctattgaaggattgacttaatctggaagaaactataccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36658" stop="41403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36958" g_stop="36973" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36974" i_stop="39135" i_length="2162">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39136" g_stop="39306" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="187" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39307" i_stop="40251" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40252" g_stop="40401" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="337" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40402" i_stop="40466" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40467" g_stop="40598" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="469" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40599" i_stop="41006" i_length="408">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41007" g_stop="41103" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="566" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E354914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36958" e_stop="36973"/>
          <exon e_start="39136" e_stop="39306"/>
          <exon e_start="40252" e_stop="40401"/>
          <exon e_start="40467" e_stop="40598"/>
          <exon e_start="41007" e_stop="41103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAGGTTGATATCTGATGATATTGTATATACATATACTTATTTGGTATTAAACTTAACCTGACATTTTTTTGTACACCAGTTAGCTGGTGTTTCCCCCTCTTCTAGATGAATCAGTGTCCCAGTAGCAGTCATTTTCTTTTTATGATGGTCTCTGAGAAATTAAACACCTACTCTCCCCCAGCACACACACACAAACAAACAAAATTAAATTAAAAATAGAAGTTAATAACAGATCAGCTTTTAGAAGATAGAGTATGACATATTTGTCTTCTTATCTTGGAGTCAAGATTCAGTCCTCCCAGCTACCCACCCACTCCAGGAAGGGGAAAAAAACATGTTTTCATTCTGTGCATGTAAAAGATGTTACACCTTCTATGTTGGGACTGAAAAGTTGAGATGTTTCTATTTCAGGGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACT</genome_strand>
        <mrna_strand>GCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240582" ref_strand="+" ref_description="SGN-E240582 [cLED-21-M8]">
      <seq>ccagcctctttttatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatactttcgcaagtgaactgtatgctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38860" stop="40829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39156" g_stop="39306" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39307" i_stop="40251" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40252" g_stop="40401" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="301" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40402" i_stop="40466" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40467" g_stop="40529" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="364" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E240582" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39156" e_stop="39306"/>
          <exon e_start="40252" e_stop="40401"/>
          <exon e_start="40467" e_stop="40529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTG</genome_strand>
        <mrna_strand>CCAGCCTCTTTTTATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTTCGCAAGTGAACTGTATGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393783" ref_strand="+" ref_description="SGN-E393783 [TUS-14-E5](-)">
      <seq>attgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatacttccgcaagtgaactgtatgctctgaagagagtgtctttctctggtcgtttgcagacacacatggatttgccatccactctgaccaatttccaggggataaagctcattctagtatcggattcttacattgggtttgaacaagaacactctattgaaggattgacttaatctggaagaaactataccaactccagattgtaatgcaatgctcccaaaatcaggatttgactttgtatagcacaaaggctcactttttcacaatcagttatagaagttgtgttacggtctacatttgtaatgagatattgctttgtaattttcttgagtaattgatcggcatccttcatttttctttgtcatgtagatccaattgtatatatgcatcagggtactgttgaaagtcttatacacacaccctaatcaatatagagctttccattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38945" stop="41656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39245" g_stop="39306" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39307" i_stop="40251" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40252" g_stop="40401" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="212" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40402" i_stop="40466" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40467" g_stop="40598" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="344" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40599" i_stop="41006" i_length="408">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41007" g_stop="41362" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="700" r_length="356" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E393783" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39245" e_stop="39306"/>
          <exon e_start="40252" e_stop="40401"/>
          <exon e_start="40467" e_stop="40598"/>
          <exon e_start="41007" e_stop="41362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAGGTTGATATCTGATGATATTGTATATACATATACTTATTTGGTATTAAACTTAACCTGACATTTTTTTGTACACCAGTTAGCTGGTGTTTCCCCCTCTTCTAGATGAATCAGTGTCCCAGTAGCAGTCATTTTCTTTTTATGATGGTCTCTGAGAAATTAAACACCTACTCTCCCCCAGCACACACACACAAACAAACAAAATTAAATTAAAAATAGAAGTTAATAACAGATCAGCTTTTAGAAGATAGAGTATGACATATTTGTCTTCTTATCTTGGAGTCAAGATTCAGTCCTCCCAGCTACCCACCCACTCCAGGAAGGGGAAAAAAACATGTTTTCATTCTGTGCATGTAAAAGATGTTACACCTTCTATGTTGGGACTGAAAAGTTGAGATGTTTCTATTTCAGGGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAATGTCCA</genome_strand>
        <mrna_strand>ATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610628" ref_strand="+" ref_description="SGN-E610628 [57792]">
      <seq>tcggcacgaggcttaatctggaagaaactatatcaactccagattgtaatgcaatgctccccaaatcgggatttgactttgtatagcacaaaggctctctttttcccaaccagttatagaagttgtgttaatgtctacatttgtaacgagatattgctttgtaatttttttgagtagttgatcggcatccttcatttgtctttgtcatgtagatccagttgtatatatgcatcagggtactgttgaaagtcttatatacgcaccctaatcaatatagagctttccactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40775" stop="41656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41064" g_stop="41356" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E610628" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41064" e_stop="41356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAA</genome_strand>
        <mrna_strand>TCGGCACGA--GGCTTAATCTGGAAGAAACTATATCAACTCCAGATTGTAATGCAATGCTCCCCAAATCGGGATTTGACTTTGTATAGCACAAAGGCTCTCTTTTTCCCAACCAGTTATAGAAGTTGTGTTAATGTCTACATTTGTAACGAGATATTGCTTTGTAATTTTTTTGAGTAGTTGATCGGCATCCTTCATTTGTCTTTGTCATGTAGATCCAGTTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATATACGCACCCTAATCAATATAGAGCTTTCCACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370928" ref_strand="+" ref_description="SGN-E370928 [TUS-27-J21](-)">
      <seq>taaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctgattttttcaaggaggaagattggcttttggacagcgcatattactcaaaaatgaaaaatgcagggttttttgatgcagacggggagtaagcttgtaaaactgtagacaaataagcagtcccaacatgtaattgtaaatattgactggctggtattatgagaaacaaaactaatagttattcaagtgattgcattgtctagcttatttgctggttgagatcattgatccccttggcaaaagtataagaaagaacaactaaaatgttattgtaaagatatgtatttttgaatagaccatgctggctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42987" stop="41477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42775" g_stop="42770" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42769" i_stop="42686" i_length="84">
            <donor d_prob="0.742" d_score="0.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42685" g_stop="42526" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="165" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42525" i_stop="42427" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42426" g_stop="42324" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="268" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42323" i_stop="42230" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42229" g_stop="42148" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="350" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42147" i_stop="42075" i_length="73">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42074" g_stop="41780" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="645" r_length="295" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="670"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E370928" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42775" e_stop="42770"/>
          <exon e_start="42685" e_stop="42526"/>
          <exon e_start="42426" e_stop="42324"/>
          <exon e_start="42229" e_stop="42148"/>
          <exon e_start="42074" e_stop="41780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGAATAGACCATGCTGGCTAA</genome_strand>
        <mrna_strand>TAAAGG....................................................................................-CAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTTTGGACAGCGCATATTACTCAAAAATGAAAAATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCCCTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGAATAGACCATGCTGGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275577" ref_strand="-" ref_description="SGN-E275577 [cLEN-10-L3]">
      <seq>cttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctgattttttcaaggaggaagattggcttctggacagcgcatattactcagagatgaaagatgcagggttttttgatgcagacggggagtaagcttgtaaaactgtagacaaataagcagtcccaacatgtaattgtaaatattgactggctggtattatgagaaacaaaactaatagttattcaagtgattgcattgtctagcttatttgctggttgagatcattgatccacttggcaaaagtataagaaagaacaactaaaatgttattgtaaagatatgtatttttgaataaaaaaaaaaaaaaaaaaaaaactcgaaactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42889" stop="41493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42589" g_stop="42526" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42525" i_stop="42427" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42426" g_stop="42324" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="167" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42323" i_stop="42230" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42229" g_stop="42148" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="249" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42147" i_stop="42075" i_length="73">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42074" g_stop="41798" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="526" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="550"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E275577" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275577" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42589" e_stop="42526"/>
          <exon e_start="42426" e_stop="42324"/>
          <exon e_start="42229" e_stop="42148"/>
          <exon e_start="42074" e_stop="41798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGA</genome_strand>
        <mrna_strand>CTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276950" ref_strand="+" ref_description="SGN-E276950 [cLEN-22-O6]">
      <seq>ttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctgattttttcaaggaggaagattggcttctggacagcgcatattactcagagatgaaagatgcagggttttttgatgcagacggggagtaagcttgtaaaactgtagacaaataagcagtcccaacatgtaattgtaaatattgactggctggtattatgagaaacaaaactaatagttattcaagtgattgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44488" stop="41592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44188" g_stop="44100" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44099" i_stop="42686" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42685" g_stop="42526" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="249" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42525" i_stop="42427" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42426" g_stop="42324" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="352" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42323" i_stop="42230" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42229" g_stop="42148" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="434" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42147" i_stop="42075" i_length="73">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42074" g_stop="41892" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="617" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E276950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44188" e_stop="44100"/>
          <exon e_start="42685" e_stop="42526"/>
          <exon e_start="42426" e_stop="42324"/>
          <exon e_start="42229" e_stop="42148"/>
          <exon e_start="42074" e_stop="41892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATT</genome_strand>
        <mrna_strand>TTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427510" ref_strand="-" ref_description="SGN-E427510 [STM-48-J5]">
      <seq>caaataaaggcaatttttatatttggatttggtgttccacttttccttgacatggaaatagctgatagggggaagtggggtgtctggtgcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttctacaactacgtcatcgtcatgtttgtgacaactgctgtaatgttatttgcctgtgggcttgcaggcattagtggcggctttggactttggttgtataatttgacagtagtttgttatcactcgctttatcttccatttctttatgtgacattcctggctgattttttcaaggaggaagattggcttctggacagcgcatactactcagagatgaaagatgcaggattttttgatgcagactgggagtaagcttgtaaaactgtgaacaaataagcaattccaacatgtaattgtaaatattgacaagatggtattgtgacaaacaaaacgaatagttattccagtgggaagcttgttnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42987" stop="41600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42779" g_stop="42770" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42769" i_stop="42686" i_length="84">
            <donor d_prob="0.742" d_score="0.00"/>
            <acceptor a_prob="0.937" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42685" g_stop="42526" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="169" r_length="159" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42525" i_stop="42427" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42426" g_stop="42324" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="272" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42323" i_stop="42230" i_length="94">
            <donor d_prob="0.088" d_score="0.96"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42229" g_stop="42148" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="354" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42147" i_stop="42075" i_length="73">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42074" g_stop="41900" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="529" r_length="175" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="559"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E427510" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427510" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42779" e_stop="42770"/>
          <exon e_start="42685" e_stop="42526"/>
          <exon e_start="42426" e_stop="42324"/>
          <exon e_start="42229" e_stop="42148"/>
          <exon e_start="42074" e_stop="41900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTG</genome_strand>
        <mrna_strand>CAAATAAAGG....................................................................................-CAATTTTTATATTTGGATTTGGTGTTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGGGTGTCTGGTGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTCTACAACTACGTCATCGTCATGTTTGTGACAACTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGTGGCGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACAGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTATGTGACATTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTCTGGACAGCGCATACTACTCAGAGATGAAAGATGCAGGATTTTTTGATGCAGACTGGGAGTAAGCTTGTAAAACTGTGAACAAATAAGCAATTCCAACATGTAATTGTAAATATTGACAAGATGGTATTGTGACAAACAAAACGAATAGTTATTCCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370929" ref_strand="+" ref_description="SGN-E370929 [TUS-27-J21]">
      <seq>ttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctgattttttcaaggaggaagattggcttctggacagcgcatattactcagagatgaaagatgcagggttttttgatgcagacggggagtaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46037" stop="41692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45737" g_stop="45706" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414">
            <donor d_prob="0.739" d_score="0.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44291" g_stop="44100" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="224" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44099" i_stop="42686" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42685" g_stop="42526" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="384" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42525" i_stop="42427" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42426" g_stop="42324" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="487" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42323" i_stop="42230" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42229" g_stop="42148" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="569" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42147" i_stop="42075" i_length="73">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42074" g_stop="41992" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="652" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E370929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45737" e_stop="45706"/>
          <exon e_start="44291" e_stop="44100"/>
          <exon e_start="42685" e_stop="42526"/>
          <exon e_start="42426" e_stop="42324"/>
          <exon e_start="42229" e_stop="42148"/>
          <exon e_start="42074" e_stop="41992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTG</genome_strand>
        <mrna_strand>TTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271423" ref_strand="+" ref_description="SGN-E271423 [cLEM-5-D11]">
      <seq>ttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattangggtggctttggactttggttgtataatttgactggagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46037" stop="41859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45737" g_stop="45706" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414">
            <donor d_prob="0.739" d_score="0.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44291" g_stop="44100" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="224" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44099" i_stop="42686" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42685" g_stop="42526" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="384" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42525" i_stop="42427" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42426" g_stop="42324" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="487" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42323" i_stop="42230" i_length="94">
            <donor d_prob="0.088" d_score="0.98"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42229" g_stop="42159" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="558" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E271423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45737" e_stop="45706"/>
          <exon e_start="44291" e_stop="44100"/>
          <exon e_start="42685" e_stop="42526"/>
          <exon e_start="42426" e_stop="42324"/>
          <exon e_start="42229" e_stop="42159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTG</genome_strand>
        <mrna_strand>TTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTANGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGGAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701041" ref_strand="+" ref_description="SGN-E701041 [FA14DE04]">
      <seq>gttttcaatgcctttgattttctattctgcgaagaatgacaaattttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgntatcactcgctttatcttccatttcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46355" stop="41876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46055" g_stop="45706" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44291" g_stop="44100" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="542" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44099" i_stop="42686" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42685" g_stop="42526" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="702" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42525" i_stop="42427" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42426" g_stop="42324" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="805" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42323" i_stop="42230" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42229" g_stop="42176" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="859" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E701041" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46055" e_stop="45706"/>
          <exon e_start="44291" e_stop="44100"/>
          <exon e_start="42685" e_stop="42526"/>
          <exon e_start="42426" e_stop="42324"/>
          <exon e_start="42229" e_stop="42176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTA</genome_strand>
        <mrna_strand>GTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGNTATCACTCGCTTTATCTTCCATTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316338" ref_strand="+" ref_description="SGN-E316338 [cTOA-25-O11]">
      <seq>ttttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46312" stop="42251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46012" g_stop="45706" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44291" g_stop="44100" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="499" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44099" i_stop="42686" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42685" g_stop="42551" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="634" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E316338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46012" e_stop="45706"/>
          <exon e_start="44291" e_stop="44100"/>
          <exon e_start="42685" e_stop="42551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTC</genome_strand>
        <mrna_strand>TTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302402" ref_strand="+" ref_description="SGN-E302402 [cLEW-27-H16]">
      <seq>gattgcttccatttcacgtcggacctagggttccgatgatctcatccacaagttttcaatgcctttgattttctattctgcgaagaatgacaaattttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46406" stop="43805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46106" g_stop="45706" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44291" g_stop="44105" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="588" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E302402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46106" e_stop="45706"/>
          <exon e_start="44291" e_stop="44105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTAT</genome_strand>
        <mrna_strand>GATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346993" ref_strand="+" ref_description="SGN-E346993 [cTOF-25-O21]">
      <seq>gagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccatggaagcaggtggcttggaatcttttatcattgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaacgagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46304" stop="43807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46004" g_stop="45706" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44291" g_stop="44107" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="484" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E346993" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46004" e_stop="45706"/>
          <exon e_start="44291" e_stop="44107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACT</genome_strand>
        <mrna_strand>GAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCATGGAAGCAGGTGGCTTGGAATCTTTTATCATTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAACGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335647" ref_strand="+" ref_description="SGN-E335647 [cTOE-8-F17]">
      <seq>ggtcggacctagggttccgatgatctcatccaccaagttttcaatgcctttgattttctattctgcgaagaatgaccaaattttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaacctgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttataacgtactttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46389" stop="43839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46090" g_stop="45706" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44291" g_stop="44139" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="541" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E335647" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46090" e_stop="45706"/>
          <exon e_start="44291" e_stop="44139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGGACCTAGGGTTCCGATGATCTCATCCA-CAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGA-CAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAA-CTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATG</genome_strand>
        <mrna_strand>GGTCGGACCTAGGGTTCCGATGATCTCATCCACCAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACCAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACCTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATAACGTACTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286663" ref_strand="+" ref_description="SGN-E286663 [cLES-12-P19]">
      <seq>gcaacttctccttcgaagttcgatctaccctcctccgattgcttccatttcacgtcggacctagggttccgatgatctcatccacaagttttcaatgcctttgattttctattctgcgaagaatgacaaattttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaagcatggcagtgcactcctaggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46442" stop="43889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46142" g_stop="45706" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414">
            <donor d_prob="0.739" d_score="0.98"/>
            <acceptor a_prob="0.604" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44291" g_stop="44189" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="540" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E286663" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46142" e_stop="45706"/>
          <exon e_start="44291" e_stop="44189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTTCTCCTTCGAAGTTCGATCTACCCTCCTCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTAC</genome_strand>
        <mrna_strand>GCAACTTCTCCTTCGAAGTTCGATCTACCCTCCTCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCTAGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245485" ref_strand="+" ref_description="SGN-E245485 [cLEF-43-D11]">
      <seq>tccgattgcttccatttcacgtcggacctaaggttccgatgatctcatgcacaagttggcaatgcctttgattttctattctgcgaagaatgacaaattttagtggagcattttccattactgaagcttcatcttccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccacggaagcaggtggcttggaatcttttatcggtgtttgcaacgtctgcaatgctatttctggagattagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46409" stop="43903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46109" g_stop="45706" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44291" g_stop="44203" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="493" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E245485" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46109" e_stop="45706"/>
          <exon e_start="44291" e_stop="44203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCAT</genome_strand>
        <mrna_strand>TCCGATTGCTTCCATTTCACGTCGGACCTAAGGTTCCGATGATCTCATGCACAAGTTGGCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTTCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCACGGAAGCAGGTGGCTTGGAATCTTTTATCGGTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315609" ref_strand="+" ref_description="SGN-E315609 [cTOA-22-D5]">
      <seq>ttttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaagagcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46312" stop="45503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46012" g_stop="45803" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E315609" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46012" e_stop="45803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACAT</genome_strand>
        <mrna_strand>TTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAAGAGCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739516" ref_strand="+" ref_description="SGN-E739516 [LC17DB04]">
      <seq>cttttactcacattcacctaataaagctgcggaatctagtccaaacatgctacagcttattcagaaggtggaccagtcgagagagtgtggttccggggcagagttaggtcattctgaaaaaaaagcatcatctaggatgcctgaagcagcagagaattctgatgagtctgttggtcatcacctgaggagtcagtctgctttctctcaaggctatggtctacaacttggccctccatcccgacgtgcatcagtccgaacccattctttgacatctcagcgcccgatccaagcttttagctcttcacattatagtcatgctactgttgacactggtgagaagaatcaaggaccaatgcacccccctcatcaggctccatccgtactttcaccttctgatccatcccaggaaggattgaagaatataggatttggtattgcaggaagtaccaataatgtaacttctatgtatgcaatgcccggaaacctttctccagcgtttgattctcattctggttttccctataggggaggtcagcttaaaattccaaatgtggctaggactactgcacaactcccaacaaatcaatccttgagtgtatcctttgataagcatgcttcctctcatacagagaaaggtgactcttgcagaggatctgcaaatggtcagtctgtggaggcttccttgctggctggggctgacaagttgcaagataagcctattctctccgcagacaagtctcaattgagtaacaccaatcgtacagtggaaagtatctttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcctcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61537" stop="63219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61834" g_stop="61873" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61874" i_stop="62074" i_length="201">
            <donor d_prob="0.916" d_score="0.95"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62075" g_stop="62919" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="884" r_length="845" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E739516" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61834" e_stop="61873"/>
          <exon e_start="62075" e_stop="62919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGACTCACATTCACCTAATAAAGCTGCGGAATCTAGGTAGTTAATTTGCTGATTCTCAGAACTATTAGCAATGGTTATGGATACATTTTGATAGATCCTGTACGATTTAGATGTTCTTTTGTACGTATCTTTACATGTGTATTAAAACCTTGTTGACGGTCAAGTTGAGCTGTATAAACTACTTTGCGGTGCCTTCTCTTTCTGGCTTCAATGTTTAAACTGTTTCTATTCTTGCAGTCCAAACATGCTACAGCTTATTCAGAAGGTGGACCAGTCGAGAGAGTGTGGTTCCGGGGCAGAGTTAGGTCATTCTGAAAAAAAAGCATCATCTAGGATGCCTGAAGCAGCAGAGAATTCTGATGAGTCTGTTGGTCATCACCTGAGGAGTCAGTCTGCTTTCTCTCAAGGCTATGGTCTACAACTTGGCCCTCCATCCCGACGTGCATCAGTCCGAACCCATTCTTTGACATCTCAGCGCCCGATCCAAGCTTTTAGCTCTTCACATTATAGTCATGCTACTGTTGACACTGGTGAGAAGAATCAAGGACCAATGCACCCCCCTCATCAGGCTCCATCCGTACTTTCACCTTCTGATCCATCCCAGGAAGGATTGAAGAATATAGGATTTGGTATTGCAGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTA</genome_strand>
        <mrna_strand>CT-TTTACTCACATTCACCTAATAAAGCTGCGGAATCTAG.........................................................................................................................................................................................................TCCAAACATGCTACAGCTTATTCAGAAGGTGGACCAGTCGAGAGAGTGTGGTTCCGGGGCAGAGTTAGGTCATTCTGAAAAAAAAGCATCATCTAGGATGCCTGAAGCAGCAGAGAATTCTGATGAGTCTGTTGGTCATCACCTGAGGAGTCAGTCTGCTTTCTCTCAAGGCTATGGTCTACAACTTGGCCCTCCATCCCGACGTGCATCAGTCCGAACCCATTCTTTGACATCTCAGCGCCCGATCCAAGCTTTTAGCTCTTCACATTATAGTCATGCTACTGTTGACACTGGTGAGAAGAATCAAGGACCAATGCACCCCCCTCATCAGGCTCCATCCGTACTTTCACCTTCTGATCCATCCCAGGAAGGATTGAAGAATATAGGATTTGGTATTGCAGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCCTCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211315" ref_strand="+" ref_description="SGN-E211315 [cLEC-70-L11]">
      <seq>aggaagtaccaataatgtaacttctatgtatgcaatgcccggaaacctttctccagcgtttgattctcattctggttttccctataggggaggtcagcttaaaattccaaatgtggctaggactactgcacaactcccaacaaatcaatccttgagtgtatcctttgataagcatgcttcctctcatacagagaaaggtgactcttgcagaggatctgcaaatggtcagtctgtggaggcttccttgctggctggggctgacaagttgcaagataagcctattctctccgcagacaagtctcaattgagtaacaccaatcgtacagtggaaagtatctttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcatcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggtacttttccaccacctcagcaagcttttggctctcagtatagcaaggattcttctcatattttccaatcacatcaaatgaatattgtggagtcgtcattatctgctcctgggaggcaaagtgatcaatacttgaatagaggtagttttgcatcccagattggtactagctcagtgaattccctgggttcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62174" stop="63411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62474" g_stop="63111" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E211315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62474" e_stop="63111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTG</genome_strand>
        <mrna_strand>AGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGGTTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372080" ref_strand="+" ref_description="SGN-E372080 [TUS-30-J24]">
      <seq>tttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcatcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggtacttttccaccacctcagcaagcttttggctctcagtatagcaaggattcttctcatattttccaatcacatcaaatgaatattgtggagtcgtcattatctgctcctgggaggcaaagtgatcaatacttgaatagaggtagttttgcatcccagattggtactagctcagtgaattccctggtttcttctgaaggggaagaacagcgaccaaaggaaagtcattctcagcaaatatcagtgacaaatgttgaccacatccagaagatgaatgattcacagggtagagaaccttttatcaagtatatcttgggaggatctgctgcaaatgctgcatctatgcagagagatattgaagcctttggccgaactttgaagcccaacctttcaaatcagaactattccctattaaaccaagtgcaggctatcaaacatgtggaggtcgatccaagcaatagggacttcaagagaatgaaagtagcagacagcagtacaggtgctccacaattttcttctggggacactgaaatgttgggagtctctgtgccagaggatttgcaaagaagcatttcatctcaacaagggagaaaaatgtctcctcatgatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62511" stop="63829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62811" g_stop="63529" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E372080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62811" e_stop="63529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTGAAGCCCAACCTTTCAAATCAGAACTATTCCCTATTAAACCAAGTGCAGGCTATCAAACATGTGGAGGTCGATCCAAGCAATAGGGACTTCAAGAGAATGAAAGTAGCAGACAGCAGTACAGGTGCTCCACAATTTTCTTCTGGGGACACTGAAATGTTGGGAGTCTCTGTGCCAGAGGATTTGCAAAGAAGCATTTCATCTCAACAAGGGAGAAAAATGTCTCCTCATGATGTACT</genome_strand>
        <mrna_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTGAAGCCCAACCTTTCAAATCAGAACTATTCCCTATTAAACCAAGTGCAGGCTATCAAACATGTGGAGGTCGATCCAAGCAATAGGGACTTCAAGAGAATGAAAGTAGCAGACAGCAGTACAGGTGCTCCACAATTTTCTTCTGGGGACACTGAAATGTTGGGAGTCTCTGTGCCAGAGGATTTGCAAAGAAGCATTTCATCTCAACAAGGGAGAAAAATGTCTCCTCATGATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285589" ref_strand="+" ref_description="SGN-E285589 [cLES-5-O17]">
      <seq>tttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcatcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggtacttttccaccacctcagcaagcttttggctttcagtatagcaaggattcttctcatattttccaatcacatcaaatgaatattgtggagtcgtcattatctgctcctgggaggcaaagtgatcaatacttgaatagaggtagttttgcatcccagattggtactagctcagtgaattccctggtttcttctgaaggggaagaacagcgaccaaaggaaagtcattctcagcaaatatcagtgacaaatgttgaccacatccagaagatgaatgattcacagggtagagaaccttttatcaagtatatcttgggaggatctgctgcaaatgctgcatctatgcagagagatattgaagcctttggccgaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62511" stop="63593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62811" g_stop="63293" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E285589" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62811" e_stop="63293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTG</genome_strand>
        <mrna_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTTTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358478" ref_strand="+" ref_description="SGN-E358478 [cLHT-35-D23]">
      <seq>ctagagctgctaatagacttactgaaaaggttatagaagacattggttttaatgaggaaggggccccaggggttaaagctaaaagaagggctatattgaccactcagcttatgcagcaactactcccctctccccctgcagcaattctttctgcagaagctaattcagagtatgagagtgtgggttactccatctctagatcgtcattgggggatgcatgtagcatgctttcttgctcaaatgctgatcgtaatatgccttgtgatgacaaagaactgcttcccaaagggtgcattacttctcagaggattaataaacatgattttgccaaaacattggaagagttacagggaagagcgaggagattggaaagtgattttatgagactggacaagagagcatcggtattagatgtgacagtggatgggcaagaccaagagaagttcggcgttattaatcggtatgctaggtttcttggtcgggggcaatatgatggtattcctcagagatacgtcacagcgcttccaataccaaaagatctgcctagtggggtgcactgtctttctctataatcacaaatgaattgaatcttttctgtgctctgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63866" stop="68052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64166" g_stop="64194" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64195" i_stop="64274" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64275" g_stop="64522" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="277" r_length="248" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64523" i_stop="64609" i_length="87">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64610" g_stop="64717" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="385" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64718" i_stop="67528" i_length="2811">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67529" g_stop="67752" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="609" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E358478" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64166" e_stop="64194"/>
          <exon e_start="64275" e_stop="64522"/>
          <exon e_start="64610" e_stop="64717"/>
          <exon e_start="67529" e_stop="67752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGCTGCTAATAGGCTTACTGAAAAGGTATAATGAACTGACTGCTATAATCCTCCTGATTTCATTATTAGTTGCCTTACTTTTAACAGCCTGTACTTCTCTCTTAGGTTATAGAAGGCATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGCAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACTGTGAGTTCTCTAGTTGCATGAGATTATTCAACTGTCTTTTGTTTTTTTGTTCTTCTGATCCTAATGATACATTTAATGCAATTGTAGGCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAGGTAATGCTTGATGTTTCAGTTTCAGTTTCTATATTTTTTCTCCAGTTACACCATTTTGCTGAATATTGTTGATTGCGCACGGCTATAGGCCTATAGCAGATGAGTTTCTTTACAGCTTGTTTTGATGGTTGTTACTTATTGTATTGTTTTGTATTATAGAAAATAATAATTAGAGGGGGCATACAAACAAGTGATAACTAATTTTGCAAAAGAGCAATTTTTGTGAGATGCAATGGTAAATAATATTTTAAATTCGATACTTGAAATGAGCTAATGTCCATGTGGGTGCACATGCTAATTCTACAAATTATATTTCATGATGCAAAGTGAGCTGTTGGTTAATGTTATTTATTAAGTAATACCATATTTTTTTTCATTGAGCTAGCTAAATAGGAATATCATTCATTATTTTTGGTAAACTTACACTTTTTTCTTAATCTTTTTCTTTTTGAATTTCATCGATCTATATTTTAAATTTTTGTTTTAAAGTCAAATACATTGTTTTTGATAGTGATACTAATGTAACTTAAAAGAAATTGTGCAGTCATTGATATGGATACTTGAGCTAAATTGACTACCTAAATGGAATTAACATTCATCATTTTTAAGGAACTTAAACTTTTTCATTTGATTTAAGTTTATTTTATAGCACAATACATAGTTCAATATATTTATGAGTTTTTTCAAATATATTCATTAATATAGGGTTCATGTGCAAAGCGATATTGAAAAGCATGAAGGCAGATAACAAAATTTTGTTCATCTTTTTAACCCCTTAAATTTGATCTCACACTTGATAAAATAGTAATTTAATTATAACCCTAATACTTAGGACTTTGAGATCAACTAAAATTTGATATTAAATCATTCCTTATTTGAACTAAGTAAGAACTCCTATTATTTAGAAATTTATGATCATGCAAGAGTTTTACTTGAACAAAAGTTTTCCTTATTTCCTGCTTCACATTTAATTTGCTTTTTAAGTATCTTACGTCTGAGTTATTTATGATTTATTTTATATTAGTTTAGTTTTGGTTTAAAATTAAGATTTGTTGAGTCCAATTTAAAAAGTCACATCATATCTAAAGAATGCATCTTCTAATAAGCTGCTAATTTGGGTATAAACACTGAATATTAATAGTCTCAACCCCTTTCCTAATATGGATATTTATTATTACTCTATTCGTATAATTAGTAAACATTGCTAAATATTTTATTTTTTGTAGTATCTCTCTAATAACATTAAATTCATTTAAAACATTATAAAATATTGATGTTCAAAAGAATTATAATTTGAATTGAATCTCTTGACCTCAACTTCAATTGTGTTGGACCTAAGATTGAGTATTGTTGACTCGCATCAGCTAAGGTAGCCTGCTCGTTAATCACTTTCCCTGCATGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAATTGTATATTTATTCTTACCACTTGCCCTGCGCGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAAATTGTATATTTATTCTTACATTGAGATTACCTATTAATAGTGGTCTGTCCCTGCATTAGCAATTGATACATTATAATTGGATAAGTTATTAGAAATATGATTTGATGAAAGACCAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACACACACATATATATATATATATATATGTATATATGTATATATATATATGTGTGTGTGTGTATATATATATATATATAAATATAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGGATAAGTTATTAGAAATATGATTTGATGAAAGACTAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACAATTTACCTCTTTGTCAATAGACTTCATATATATATATATATATATATATATATATATAAAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGTGTTGTTCGAATTTATGTTCTTTGTCAATATTTAATTATAGCATTTCGTCCTATTAGTGCTTGCATAATATGTTGGAGGTTCTGTATGTCATGATTTCTTCTCCTTTATTGATCTAACTAATATGGTAACATTTCTTTTCAATTAATGAAGTTGCATCTACTTAGTGTCATTTTCTATTTTTACATAATTCACTTTTCTTATATACAATCTTTTTAGTTGACGCAATACACCCATGTATACTGAAACTAGTTACTAAATAAAGCTTAATTTGTTAATTATGTAGATACTACATGTAGTGCTAAATTTTAATGATGGATATGTAAATCTAAGATTTACAAAGAACAATTTCAGAAATTCAAGGTTTACTTTGAACTGTGATGGCGCTTTTGCTTCTGATTTTGCACCTCTAAAAATATATACAGCTGATGATAGGTCTTAAACCATGATCTTTCACTCCATTAGAAAATGAGGGCAAAGTGCTAACTGTACTTACTGGTTGGTTACGTATAAACTTGGATTTTTTATTAGGAAATCCACACTTCTCAAGTCTTAAATGTCTACTGTCATTTGACTTGCTATTAGTTTTTGGACATTCATTTTATCTTTTGATGTTTCAGTTTTACACTTCCCATTATATTATATTAATACTGTCTGCTTTACTAGCTTCCTTTTTTACCTGAAAAAGATATGTTAATTCTGCTTGATTAGTTTTGTTTGCTTTCTAATTTGTTCCTTCTCTGATCAGACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATC</genome_strand>
        <mrna_strand>CTAGAGCTGCTAATAGACTTACTGAAAAG................................................................................GTTATAGAAGACATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGTAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACT.......................................................................................GCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTGGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGGGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATGAATTGAATCTTTTCTGTGCTCTGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471269" ref_strand="+" ref_description="SGN-E471269 [cSTB-23-K22]">
      <seq>attgattttaatgaggaaggggcaccaggggttaaagctaaaagaagagctatattgaccactcagcttatgcagcaactactcccctctccccctgcagcaattctttctgcagaagctaattcagagtatgagagtgtgggttactccatctctagattggcattgggggatgcatgcagcatgctttcttgctcaaatgatgatcgtaatatgccttgtgatgacaaagaacagcttcccgaagagtgcattacttctcagaggattaataaacatgattttgccaaaactctagaagagttacagggaagagcgaggagattggaaagtgattttatgagactggacaagagagcatcagtattagatgtgacagtggatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63987" stop="67872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64287" g_stop="64522" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64523" i_stop="64609" i_length="87">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64610" g_stop="64717" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="344" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64718" i_stop="67528" i_length="2811">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67529" g_stop="67572" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="388" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E471269" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64287" e_stop="64522"/>
          <exon e_start="64610" e_stop="64717"/>
          <exon e_start="67529" e_stop="67572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGCAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACTGTGAGTTCTCTAGTTGCATGAGATTATTCAACTGTCTTTTGTTTTTTTGTTCTTCTGATCCTAATGATACATTTAATGCAATTGTAGGCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAGGTAATGCTTGATGTTTCAGTTTCAGTTTCTATATTTTTTCTCCAGTTACACCATTTTGCTGAATATTGTTGATTGCGCACGGCTATAGGCCTATAGCAGATGAGTTTCTTTACAGCTTGTTTTGATGGTTGTTACTTATTGTATTGTTTTGTATTATAGAAAATAATAATTAGAGGGGGCATACAAACAAGTGATAACTAATTTTGCAAAAGAGCAATTTTTGTGAGATGCAATGGTAAATAATATTTTAAATTCGATACTTGAAATGAGCTAATGTCCATGTGGGTGCACATGCTAATTCTACAAATTATATTTCATGATGCAAAGTGAGCTGTTGGTTAATGTTATTTATTAAGTAATACCATATTTTTTTTCATTGAGCTAGCTAAATAGGAATATCATTCATTATTTTTGGTAAACTTACACTTTTTTCTTAATCTTTTTCTTTTTGAATTTCATCGATCTATATTTTAAATTTTTGTTTTAAAGTCAAATACATTGTTTTTGATAGTGATACTAATGTAACTTAAAAGAAATTGTGCAGTCATTGATATGGATACTTGAGCTAAATTGACTACCTAAATGGAATTAACATTCATCATTTTTAAGGAACTTAAACTTTTTCATTTGATTTAAGTTTATTTTATAGCACAATACATAGTTCAATATATTTATGAGTTTTTTCAAATATATTCATTAATATAGGGTTCATGTGCAAAGCGATATTGAAAAGCATGAAGGCAGATAACAAAATTTTGTTCATCTTTTTAACCCCTTAAATTTGATCTCACACTTGATAAAATAGTAATTTAATTATAACCCTAATACTTAGGACTTTGAGATCAACTAAAATTTGATATTAAATCATTCCTTATTTGAACTAAGTAAGAACTCCTATTATTTAGAAATTTATGATCATGCAAGAGTTTTACTTGAACAAAAGTTTTCCTTATTTCCTGCTTCACATTTAATTTGCTTTTTAAGTATCTTACGTCTGAGTTATTTATGATTTATTTTATATTAGTTTAGTTTTGGTTTAAAATTAAGATTTGTTGAGTCCAATTTAAAAAGTCACATCATATCTAAAGAATGCATCTTCTAATAAGCTGCTAATTTGGGTATAAACACTGAATATTAATAGTCTCAACCCCTTTCCTAATATGGATATTTATTATTACTCTATTCGTATAATTAGTAAACATTGCTAAATATTTTATTTTTTGTAGTATCTCTCTAATAACATTAAATTCATTTAAAACATTATAAAATATTGATGTTCAAAAGAATTATAATTTGAATTGAATCTCTTGACCTCAACTTCAATTGTGTTGGACCTAAGATTGAGTATTGTTGACTCGCATCAGCTAAGGTAGCCTGCTCGTTAATCACTTTCCCTGCATGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAATTGTATATTTATTCTTACCACTTGCCCTGCGCGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAAATTGTATATTTATTCTTACATTGAGATTACCTATTAATAGTGGTCTGTCCCTGCATTAGCAATTGATACATTATAATTGGATAAGTTATTAGAAATATGATTTGATGAAAGACCAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACACACACATATATATATATATATATATGTATATATGTATATATATATATGTGTGTGTGTGTATATATATATATATATAAATATAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGGATAAGTTATTAGAAATATGATTTGATGAAAGACTAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACAATTTACCTCTTTGTCAATAGACTTCATATATATATATATATATATATATATATATATAAAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGTGTTGTTCGAATTTATGTTCTTTGTCAATATTTAATTATAGCATTTCGTCCTATTAGTGCTTGCATAATATGTTGGAGGTTCTGTATGTCATGATTTCTTCTCCTTTATTGATCTAACTAATATGGTAACATTTCTTTTCAATTAATGAAGTTGCATCTACTTAGTGTCATTTTCTATTTTTACATAATTCACTTTTCTTATATACAATCTTTTTAGTTGACGCAATACACCCATGTATACTGAAACTAGTTACTAAATAAAGCTTAATTTGTTAATTATGTAGATACTACATGTAGTGCTAAATTTTAATGATGGATATGTAAATCTAAGATTTACAAAGAACAATTTCAGAAATTCAAGGTTTACTTTGAACTGTGATGGCGCTTTTGCTTCTGATTTTGCACCTCTAAAAATATATACAGCTGATGATAGGTCTTAAACCATGATCTTTCACTCCATTAGAAAATGAGGGCAAAGTGCTAACTGTACTTACTGGTTGGTTACGTATAAACTTGGATTTTTTATTAGGAAATCCACACTTCTCAAGTCTTAAATGTCTACTGTCATTTGACTTGCTATTAGTTTTTGGACATTCATTTTATCTTTTGATGTTTCAGTTTTACACTTCCCATTATATTATATTAATACTGTCTGCTTTACTAGCTTCCTTTTTTACCTGAAAAAGATATGTTAATTCTGCTTGATTAGTTTTGTTTGCTTTCTAATTTGTTCCTTCTCTGATCAGACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGC</genome_strand>
        <mrna_strand>ATTGATTTTAATGAGGAAGGGGCACCAGGGGTTAAAGCTAAAAGAAGAGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATTGGCATTGGGGGATGCATGCAGCATGCTTTCTTGCTCAAATGATGATCGTAATATGCCTTGTGATGACAAAGAACA.......................................................................................GCTTCCCGAAGAGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACTCTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAAGAGAGCATCAGTATTAGATGTGACAGTGGATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372079" ref_strand="+" ref_description="SGN-E372079 [TUS-30-J24](-)">
      <seq>tgatcgtaatatgccttgtgatgacaaagaactgcttctcaaagggtgcattacttctcagaggattaataaacatgattttgccaaaacattagaagagttacagggaagagcgaggagattggaaagtgattttatgagactggacaagagagcatcggtattagatgtgacagtggatgggcaagaccaagagaagttcggcgttattaatcggtatgctaggtttcttggtcgggcgcaatatgatggtattcctcagagatacgtcacagcgcttccaataccaaaagatctgcctagtggggtgcactgtctttctctataatcacaaatcaattgaatcttttctgtgctctgtcatcaattacctcaacttcccgtagacatttttgtcctagtcatgtactagttctagcaagagcaaaatagaaccacacaatcagtattgctgaacatactcaattgtcatctcagatggaacgtagctgtccaatcttttgcatgtaggccatttatgtcattatcaagaaaatatacatgtacatctcttcaaacttagtgaggggaggtgaaactagggtgccccatcattttttgccagaagtggggagagaatacatacttctgtgcttttaagctgttgacatacagttggccatcattatgtataagagatgcccaggcgctcataattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64190" stop="68386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64490" g_stop="64522" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64523" i_stop="64609" i_length="87">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64610" g_stop="64717" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="141" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64718" i_stop="67528" i_length="2811">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67529" g_stop="68085" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="698" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E372079" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64490" e_stop="64522"/>
          <exon e_start="64610" e_stop="64717"/>
          <exon e_start="67529" e_stop="68085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCGTAATATGCCTTGTGATGACAAAGAACTGTGAGTTCTCTAGTTGCATGAGATTATTCAACTGTCTTTTGTTTTTTTGTTCTTCTGATCCTAATGATACATTTAATGCAATTGTAGGCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAGGTAATGCTTGATGTTTCAGTTTCAGTTTCTATATTTTTTCTCCAGTTACACCATTTTGCTGAATATTGTTGATTGCGCACGGCTATAGGCCTATAGCAGATGAGTTTCTTTACAGCTTGTTTTGATGGTTGTTACTTATTGTATTGTTTTGTATTATAGAAAATAATAATTAGAGGGGGCATACAAACAAGTGATAACTAATTTTGCAAAAGAGCAATTTTTGTGAGATGCAATGGTAAATAATATTTTAAATTCGATACTTGAAATGAGCTAATGTCCATGTGGGTGCACATGCTAATTCTACAAATTATATTTCATGATGCAAAGTGAGCTGTTGGTTAATGTTATTTATTAAGTAATACCATATTTTTTTTCATTGAGCTAGCTAAATAGGAATATCATTCATTATTTTTGGTAAACTTACACTTTTTTCTTAATCTTTTTCTTTTTGAATTTCATCGATCTATATTTTAAATTTTTGTTTTAAAGTCAAATACATTGTTTTTGATAGTGATACTAATGTAACTTAAAAGAAATTGTGCAGTCATTGATATGGATACTTGAGCTAAATTGACTACCTAAATGGAATTAACATTCATCATTTTTAAGGAACTTAAACTTTTTCATTTGATTTAAGTTTATTTTATAGCACAATACATAGTTCAATATATTTATGAGTTTTTTCAAATATATTCATTAATATAGGGTTCATGTGCAAAGCGATATTGAAAAGCATGAAGGCAGATAACAAAATTTTGTTCATCTTTTTAACCCCTTAAATTTGATCTCACACTTGATAAAATAGTAATTTAATTATAACCCTAATACTTAGGACTTTGAGATCAACTAAAATTTGATATTAAATCATTCCTTATTTGAACTAAGTAAGAACTCCTATTATTTAGAAATTTATGATCATGCAAGAGTTTTACTTGAACAAAAGTTTTCCTTATTTCCTGCTTCACATTTAATTTGCTTTTTAAGTATCTTACGTCTGAGTTATTTATGATTTATTTTATATTAGTTTAGTTTTGGTTTAAAATTAAGATTTGTTGAGTCCAATTTAAAAAGTCACATCATATCTAAAGAATGCATCTTCTAATAAGCTGCTAATTTGGGTATAAACACTGAATATTAATAGTCTCAACCCCTTTCCTAATATGGATATTTATTATTACTCTATTCGTATAATTAGTAAACATTGCTAAATATTTTATTTTTTGTAGTATCTCTCTAATAACATTAAATTCATTTAAAACATTATAAAATATTGATGTTCAAAAGAATTATAATTTGAATTGAATCTCTTGACCTCAACTTCAATTGTGTTGGACCTAAGATTGAGTATTGTTGACTCGCATCAGCTAAGGTAGCCTGCTCGTTAATCACTTTCCCTGCATGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAATTGTATATTTATTCTTACCACTTGCCCTGCGCGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAAATTGTATATTTATTCTTACATTGAGATTACCTATTAATAGTGGTCTGTCCCTGCATTAGCAATTGATACATTATAATTGGATAAGTTATTAGAAATATGATTTGATGAAAGACCAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACACACACATATATATATATATATATATGTATATATGTATATATATATATGTGTGTGTGTGTATATATATATATATATAAATATAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGGATAAGTTATTAGAAATATGATTTGATGAAAGACTAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACAATTTACCTCTTTGTCAATAGACTTCATATATATATATATATATATATATATATATATAAAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGTGTTGTTCGAATTTATGTTCTTTGTCAATATTTAATTATAGCATTTCGTCCTATTAGTGCTTGCATAATATGTTGGAGGTTCTGTATGTCATGATTTCTTCTCCTTTATTGATCTAACTAATATGGTAACATTTCTTTTCAATTAATGAAGTTGCATCTACTTAGTGTCATTTTCTATTTTTACATAATTCACTTTTCTTATATACAATCTTTTTAGTTGACGCAATACACCCATGTATACTGAAACTAGTTACTAAATAAAGCTTAATTTGTTAATTATGTAGATACTACATGTAGTGCTAAATTTTAATGATGGATATGTAAATCTAAGATTTACAAAGAACAATTTCAGAAATTCAAGGTTTACTTTGAACTGTGATGGCGCTTTTGCTTCTGATTTTGCACCTCTAAAAATATATACAGCTGATGATAGGTCTTAAACCATGATCTTTCACTCCATTAGAAAATGAGGGCAAAGTGCTAACTGTACTTACTGGTTGGTTACGTATAAACTTGGATTTTTTATTAGGAAATCCACACTTCTCAAGTCTTAAATGTCTACTGTCATTTGACTTGCTATTAGTTTTTGGACATTCATTTTATCTTTTGATGTTTCAGTTTTACACTTCCCATTATATTATATTAATACTGTCTGCTTTACTAGCTTCCTTTTTTACCTGAAAAAGATATGTTAATTCTGCTTGATTAGTTTTGTTTGCTTTCTAATTTGTTCCTTCTCTGATCAGACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATCAATTACCTCAACTTCCCGTAGACATTTTTGTCCTAGTCATGTACTAGTTCTAGCAAGAGCAAAATAGAACCACACAATCAGTATTGCTGAACATACTCAATTGTCATCTCAGATGGAACGTAGCTGTCCAATCTTTTGCATGTAGGCCATTTATGTCATTATCAAGAAAATATACATGTACATCTCTTCAAACTTAGTGAGGGGAGGTGAAACTAGGGTGCCCCATCATTTTTTGCCAGAAGTGGGGAGAGAATACATACTTCTGTGCTTCTAAGCTGTTGACATACAGTTGGCCATCATTATGTATAAGAGATGCCCAGGCGCTCATAATTG</genome_strand>
        <mrna_strand>TGATCGTAATATGCCTTGTGATGACAAAGAACT.......................................................................................GCTTCTCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATCAATTACCTCAACTTCCCGTAGACATTTTTGTCCTAGTCATGTACTAGTTCTAGCAAGAGCAAAATAGAACCACACAATCAGTATTGCTGAACATACTCAATTGTCATCTCAGATGGAACGTAGCTGTCCAATCTTTTGCATGTAGGCCATTTATGTCATTATCAAGAAAATATACATGTACATCTCTTCAAACTTAGTGAGGGGAGGTGAAACTAGGGTGCCCCATCATTTTTTGCCAGAAGTGGGGAGAGAATACATACTTCTGTGCTTTTAAGCTGTTGACATACAGTTGGCCATCATTATGTATAAGAGATGCCCAGGCGCTCATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596003" ref_strand="-" ref_description="SGN-E596003 [39288]">
      <seq>tttcggatccaaaatcattttcggagcagaaactacagcgggcatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgttcagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaggcaagaaaacttgatggatttcaggcacaaactcatttataagaacattaatgtcaaacatgtggacgtcgtcctgaaatatttgcactgttttgatgattctgagctaaatgaagttgtagaataggttttttttgtagtttgagctctttttacagggctattctgttctaagttctaattgctcttagcaaaaactagacaattattattgtggtgatataacattctgctagcgaatccatgtttctctatccttccaacttccactatatttcaatttatgtcttgtaatgatggaaacagctaaagattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76147" stop="79406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76446" g_stop="76629" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="285" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79101" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="628" r_length="343" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E596003" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596003" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76446" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGGATCCAAATTCATTTTCGGAGCAGAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGG--TTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</genome_strand>
        <mrna_strand>TTTCGGATCCAAAATCATTTTCGGAGCAGAAACTACAGCGGGCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTCAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAGGCAAGAAAACTTGAT-GGA---TTTCAGGCACAAACTCATTTATAAGAACATTAATGTCAAACATGTGGACGTCGTCCTGAAATATTTGCACTGTTTTGATGATTCTGAGCTAAATGAAGTTGTAGAATAGGTTTTTTTTGTAGTTTGAGCTCTTTTTACAGGGCTATTCTGTTCTAAGTTCTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATA-TAACATTCTGCTAGCGAATCCATGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407285" ref_strand="+" ref_description="SGN-E407285 [PPI-6-J5]">
      <seq>caaaatcattttcggcgcagaaactacagcaggcatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgttcagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggaattatgggtctcatgacaaactacttgggtgttggtcccaggggaaacaagaaaacttgatggaattgtttcaggcacaaactcatttataagaaaatagatgtcaaacatgtggatgtcgtcccgaaatatttgcactgttttgatgattctgagctaaatgaagttgtagaataggttntttgtagtttgagctctttttacagggctattctgttctaagttctaattgctcttagcaaaaactagacaatcattattgtggtgatataacattctgctagcgaatccaggtttctctatccttccaacttccactatatttcaatttatgtctttgtatgatggaaacagctaaagattaactnctcttcagtattctacctncaattgntctgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76155" stop="79406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76455" g_stop="76629" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="276" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79101" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="621" r_length="345" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E407285" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76455" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCATTTTCGGAGCAGAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</genome_strand>
        <mrna_strand>CAAAATCATTTTCGGCGCAGAAACTACAGCAGGCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTCAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCAGGGGAAACAAGAAAACTTGATGGAATTGTTTCAGGCACAAACTCATTTATAAGAAAATAGATGTCAAACATGTGGATGTCGTCCCGAAATATTTGCACTGTTTTGATGATTCTGAGCTAAATGAAGTTGTAGAATAGGTTNTTTGTAGTTTGAGCTCTTTTTACAGGGCTATTCTGTTCTAAGTTCTAATTGCTCTTAGCAAAAACTAGACAATCATTATTGTGGTGATA-TAACATTCTGCTAGCGAATCCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711234" ref_strand="+" ref_description="SGN-E711234 [FB01BF01]">
      <seq>gaaactacagcagccatttcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76174" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76474" g_stop="76629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="258" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="559" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E711234" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76474" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTAC-AAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>GAAACTACAGCAGCCATTTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732177" ref_strand="+" ref_description="SGN-E732177 [LB01BH10]">
      <seq>cgatctacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76176" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76474" g_stop="76629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="257" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="558" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="588"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E732177" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76474" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CGATCTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371591" ref_strand="-" ref_description="SGN-E371591 [TUS-29-G24]">
      <seq>ttggtcagtagggatttcagcgaaagaaactacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttccactatatttcaatttatgtcttgttatttagtcttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76173" stop="79415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76475" g_stop="76629" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="181" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="282" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79115" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="642" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="657"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E371591" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371591" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76475" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</genome_strand>
        <mrna_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308531" ref_strand="+" ref_description="SGN-E308531 [cLEY-21-B14]">
      <seq>aaactacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76175" stop="79350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76475" g_stop="76629" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="256" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="557" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E308531" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76475" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345550" ref_strand="+" ref_description="SGN-E345550 [cTOF-18-N11]">
      <seq>aaactacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctggttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76175" stop="79349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76475" g_stop="76629" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="256" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79049" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="551" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E345550" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76475" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCT-GTTCGTG</genome_strand>
        <mrna_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGGTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296287" ref_strand="-" ref_description="SGN-E296287 [cLET-19-C6](-)">
      <seq>actacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatcctttcaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76177" stop="79385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76477" g_stop="76629" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="254" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79087" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="586" r_length="332" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E296287" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296287" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76477" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATT</genome_strand>
        <mrna_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTTCAACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296425" ref_strand="+" ref_description="SGN-E296425 [cLET-19-C6]">
      <seq>actacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatcctttcaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76177" stop="79385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76477" g_stop="76629" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="254" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79087" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="586" r_length="332" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E296425" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76477" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATT</genome_strand>
        <mrna_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTTCAACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290792" ref_strand="+" ref_description="SGN-E290792 [cLET-10-I19]">
      <seq>actacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76177" stop="79385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76477" g_stop="76629" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="254" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79087" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="586" r_length="332" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E290792" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76477" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATT</genome_strand>
        <mrna_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290715" ref_strand="+" ref_description="SGN-E290715 [cLET-10-I18]">
      <seq>actacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76177" stop="79131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76477" g_stop="76629" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="254" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="78831" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="330" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E290715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76477" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="78831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGT</genome_strand>
        <mrna_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391037" ref_strand="+" ref_description="SGN-E391037 [TUS-47-N5]">
      <seq>actacagcaggcatcttgtcagcagcgaacgatccacggcaaccgtcgacggcaaagccgcacaagccttcgcagggcgctccacaatatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttatatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76177" stop="77330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76477" g_stop="76629" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77030" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="227" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E391037" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76477" e_stop="76629"/>
          <exon e_start="76957" e_stop="77030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGA</genome_strand>
        <mrna_strand>ACTACAGCAGGCATCTTGTCAGCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGCACAAGCCTTCGCAGGGCGCTCCACAATATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTATA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288961" ref_strand="+" ref_description="SGN-E288961 [cLES-17-M22]">
      <seq>ctacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttccactatatttcaatttatgtcttgttatttagtcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76178" stop="79415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76478" g_stop="76629" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="253" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79115" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="613" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="614" polyA_stop="623"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E288961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76478" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</genome_strand>
        <mrna_strand>CTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733298" ref_strand="+" ref_description="SGN-E733298 [LB04CA06]">
      <seq>ctacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76178" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76478" g_stop="76629" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="253" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="554" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E733298" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76478" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289337" ref_strand="+" ref_description="SGN-E289337 [cLES-18-H4]">
      <seq>tacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76179" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76479" g_stop="76629" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="252" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="553" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E289337" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76479" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352564" ref_strand="+" ref_description="SGN-E352564 [cTOS-9-N13]">
      <seq>tacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76179" stop="79365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76479" g_stop="76629" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="252" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="553" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="572"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E352564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76479" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271348" ref_strand="+" ref_description="SGN-E271348 [cLEM-5-E9]">
      <seq>tacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtnattgctcttagcaaaaactagacaattattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76179" stop="79322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76479" g_stop="76629" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="252" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79022" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="519" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E271348" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76479" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTAT</genome_strand>
        <mrna_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTNATTGCTCTTAGCAAAAACTAGACAATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712978" ref_strand="+" ref_description="SGN-E712978 [FB06BE05]">
      <seq>cagcaaccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattacgtttttggtagtttgagctctttttatagggctattccgttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgctctgttcgtgaattcaggtttctctatccttccgacttccactatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76181" stop="79388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76481" g_stop="76629" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="250" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79088" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="583" r_length="333" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E712978" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76481" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTT</genome_strand>
        <mrna_strand>CAGCAACCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTACGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCCGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGCTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCGACTTCCACTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549254" ref_strand="+" ref_description="SGN-E549254 [TUS-68-L14](-)">
      <seq>cagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccggtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76181" stop="79355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76481" g_stop="76629" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="250" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="551" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="573"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E549254" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76481" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312577" ref_strand="+" ref_description="SGN-E312577 [cLEZ-20-G18]">
      <seq>agcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76182" stop="79323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76482" g_stop="76629" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="249" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79023" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="517" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E312577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76482" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATT</genome_strand>
        <mrna_strand>AGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341041" ref_strand="+" ref_description="SGN-E341041 [cTOE-22-C23]">
      <seq>agcatccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76182" stop="79226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76482" g_stop="76629" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="249" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="78926" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="420" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E341041" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76482" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="78926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGA</genome_strand>
        <mrna_strand>AGCATCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588271" ref_strand="+" ref_description="SGN-E588271 [41821]">
      <seq>caggcatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgttcagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatganggaatatggaaaatgatcttaaacagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtcccaggggaaacaagaaaacttgatggaattgtttcaggcacaaactcatttataagaacattgatgtcaaacatgtggatgtcgtcccgaaatatttgcactgttttgatgattctgagctaaatgaagttgtagaataggttttttgtagtttgagctctttttacagggctattctgttctaagttctaattgctcttagcaaaaactagacaattattattgtggtgatataacattctgctagcgaatccaggtttctctatccttccaacttccactatatttcaatttatgtcttgtaatgatggaaacagctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76184" stop="79406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76484" g_stop="76629" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="248" r_length="102" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79101" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="593" r_length="345" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E588271" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76484" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGA-GGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</genome_strand>
        <mrna_strand>CAGGCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTCAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGANGGAATATGGAAAATGATCTTAAACAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCAGGGGAAACAAGAAAACTTGATGGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGATGTCAAACATGTGGATGTCGTCCCGAAATATTTGCACTGTTTTGATGATTCTGAGCTAAATGAAGTTGTAGAATAGGTTTTTTGTAGTTTGAGCTCTTTTTACAGGGCTATTCTGTTCTAAGTTCTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATA-TAACATTCTGCTAGCGAATCCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568968" ref_strand="+" ref_description="SGN-E568968 [13334]">
      <seq>cgggcatgtcgtcaccagcgaacgatccacggcaaccgttgacggcaaagccgtagaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgttcagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaggcaagaaaacttgatggatttcaggcacaaactcatttataagaacattaatgtcaaacatgtggacgtcgtcctgaaatatttgcactggttttgatgattctgagctaaatgaagttgtagaataggtttttttgtagtttgagctctttttacagcgcctattctgttctaagttctaattgctcttagcaaaaactagacaattattattgtggtgatataacattctgctagcgaatccatgttctctatgcttccaacttccactaatatttcaatttaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76184" stop="79395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76484" g_stop="76629" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="247" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79094" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="584" r_length="337" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E568968" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76484" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACT-GTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGG-TTTTTGGTAGTTTGAGCTCTTTTTATAG-GGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACT-ATATTTCAATTT</genome_strand>
        <mrna_strand>CGGGCATGTCGTCACCAGCGAACGATCCACGGCAACCGTTGACGGCAAAGCCGTAGAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTCAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAGGCAAGAAAACTTGAT-GGA---TTTCAGGCACAAACTCATTTATAAGAACATTAATGTCAAACATGTGGACGTCGTCCTGAAATATTTGCACTGGTTTTGATGATTCTGAGCTAAATGAAGTTGTAGAATAGGTTTTTTTGTAGTTTGAGCTCTTTTTACAGCGCCTATTCTGTTCTAAGTTCTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATA-TAACATTCTGCTAGCGAATCCATG-TTCTCTATGCTTCCAACTTCCACTAATATTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406650" ref_strand="+" ref_description="SGN-E406650 [PPI-4-D3]">
      <seq>caggcatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgttcagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaaacagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtcccaggggaaacaagaaaacttgatggaattgtttcaggcacaaactcatttataagaacattgatgtcaaacatgtggatgtcgtcccgaaatatttgcactgttttgatgattctgagctaaatgaagttgtagaataggttttttgtagtttgagctctttttacagggctattctgttctaagttctaattgctcttagcaaaaactagacaattattattgtggtgatataacattctgctagcgaatccaggtttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76184" stop="79365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76484" g_stop="76629" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="247" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79065" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="556" r_length="309" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E406650" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76484" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTA</genome_strand>
        <mrna_strand>CAGGCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTCAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAACAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCAGGGGAAACAAGAAAACTTGATGGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGATGTCAAACATGTGGATGTCGTCCCGAAATATTTGCACTGTTTTGATGATTCTGAGCTAAATGAAGTTGTAGAATAGGTTTTTTGTAGTTTGAGCTCTTTTTACAGGGCTATTCTGTTCTAAGTTCTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATA-TAACATTCTGCTAGCGAATCCAGGTTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421971" ref_strand="+" ref_description="SGN-E421971 [STM-33-J18]">
      <seq>caggcatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgttcagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaaacagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtcccaggggaaacaagaaaacttgatggaattgtttcaggcacaaactcatttataagaacattgatgtcaaacatgtggatgtcgtcccgaaatatttgcactgttttgatgattctgagctaaatgaagttgtagaataggttttttgtagtttgagctctttttacagggctattctgttctaagttctaattgctcttagcaaaaactagacaattattattgtggtgatataacattctgctagcgaatccaggtttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76184" stop="79363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76484" g_stop="76629" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="247" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79063" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="554" r_length="307" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E421971" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76484" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTC</genome_strand>
        <mrna_strand>CAGGCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTCAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAACAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCAGGGGAAACAAGAAAACTTGATGGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGATGTCAAACATGTGGATGTCGTCCCGAAATATTTGCACTGTTTTGATGATTCTGAGCTAAATGAAGTTGTAGAATAGGTTTTTTGTAGTTTGAGCTCTTTTTACAGGGCTATTCTGTTCTAAGTTCTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATA-TAACATTCTGCTAGCGAATCCAGGTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272379" ref_strand="+" ref_description="SGN-E272379 [cLEM-19-A20]">
      <seq>agccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76185" stop="79226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76485" g_stop="76629" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="246" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="78926" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="417" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E272379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76485" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="78926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGA</genome_strand>
        <mrna_strand>AGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558680" ref_strand="+" ref_description="SGN-E558680 [18057]">
      <seq>gtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgttcagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaaacagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtcccaggggaaacaagaaaacttgatggaattgtttcaggcacaaactcatttataagaacattgatgtcaaacatgtggatgtcgtcccgaaatatttgcactgttttgatgattctgagctaaatgaagttgtagaataggttttttgtagtttgagctctttttacagggctattctgttctaagttctaattgctcttagcaaaaactagacaattattattgtggtgatataacattctgctagcgaatccaggtttctctatccttccaacttccactatatttcaatttatgtcttgtaatgatggaaacagctaaagattaactcctcttcagtattctaaaaaaaaacaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76191" stop="79406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76491" g_stop="76629" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="240" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79101" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="585" r_length="345" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="641"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E558680" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76491" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</genome_strand>
        <mrna_strand>GTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTCAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAACAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCAGGGGAAACAAGAAAACTTGATGGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGATGTCAAACATGTGGATGTCGTCCCGAAATATTTGCACTGTTTTGATGATTCTGAGCTAAATGAAGTTGTAGAATAGGTTTTTTGTAGTTTGAGCTCTTTTTACAGGGCTATTCTGTTCTAAGTTCTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATA-TAACATTCTGCTAGCGAATCCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335155" ref_strand="+" ref_description="SGN-E335155 [cTOE-1-O24]">
      <seq>gtcgtcaccagcgaaccgacccacggcaacccgtcgacggcaaagccgtacaagcccttcgccggtcgcctcacaagctcttcctatagactactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagataccaagacttgctcgtggcttgctattatattcagtgcctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaacctacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcaccaaactcatttataagaaccattgctgtcaaacatgtnggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggttttntggtagtttgagctctttttatagggcttattcagttcttaagttgtaattgctcttagcaaaaactagacaatttattattgtggtgattttaaccgttctgttcgtgaattcagggtttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76191" stop="79360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76491" g_stop="76629" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="245" r_length="103" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="555" r_length="310" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="576"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E335155" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76491" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCACCAGCGAA-CGATCCACGGCAA-CCGTCGACGGCAAAGCCGTACAAG-CCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTA-CAAGATTTGCTCGTGGCTTGCTATTATATTCAGTG-CTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAA-CTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCA-CAAACTCATTTATAAGAA-CATTGCTGTCAAACATGT-GGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTT-TGGTAGTTTGAGCTCTTTTTATAGGGC-TATTCAGTTC-TAAGTTGTAATTGCTCTTAGCAAAAACTAGACAA-TTATTATTGTGGTGATATTAA-CGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>GTCGTCACCAGCGAACCGACCCACGGCAACCCGTCGACGGCAAAGCCGTACAAGCCCTTCGCCGGTCGCCTCACAAGCTCTTCCTATAGACTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACCAAGACTTGCTCGTGGCTTGCTATTATATTCAGTGCCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACCTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACCAAACTCATTTATAAGAACCATTGCTGTCAAACATGTNGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTNTGGTAGTTTGAGCTCTTTTTATAGGGCTTATTCAGTTCTTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTTATTATTGTGGTGATTTTAACCGTTCTGTTCGTGAATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572570" ref_strand="+" ref_description="SGN-E572570 [31744]">
      <seq>gaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgttcagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaaacagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtcccaggggaaacaagaaaacttgatggaattgtttcaggcacaaactcatttataagaacattgatgtcaaacatgtggatgtcgtcccgaaatatttgcactgttttgatgattctgagctaaatgaagttgtagaataggttttttgtagtttgagctctttttacagggctattctgttctaagttctaattgctcttaggaaaaactaggacaattattattgtggtgatataacattctgctagcgaatccaggtttctctatccttccaagttccactatatttcacttcatgtcttgtactgatggaaacagctaaagattaactcctcttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76203" stop="79409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76503" g_stop="76629" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="228" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79101" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="574" r_length="346" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E572570" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76503" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTA-GACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTT</genome_strand>
        <mrna_strand>GAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTCAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAACAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCAGGGGAAACAAGAAAACTTGATGGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGATGTCAAACATGTGGATGTCGTCCCGAAATATTTGCACTGTTTTGATGATTCTGAGCTAAATGAAGTTGTAGAATAGGTTTTTTGTAGTTTGAGCTCTTTTTACAGGGCTATTCTGTTCTAAGTTCTAATTGCTCTTAGGAAAAACTAGGACAATTATTATTGTGGTGATA-TAACATTCTGCTAGCGAATCCAGGTTTCTCTATCCTTCCAAGTTCCACTATATTTCACTTCATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226439" ref_strand="+" ref_description="SGN-E226439 [cLEL-26-P19](-)">
      <seq>cgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctacggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76235" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76535" g_stop="76629" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="497" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="508"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E226439" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76535" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTACGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226631" ref_strand="+" ref_description="SGN-E226631 [cLEL-26-P19](-)">
      <seq>tacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttataagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76237" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76537" g_stop="76629" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="194" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="495" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="506"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E226631" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76537" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTATAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551986" ref_strand="+" ref_description="SGN-E551986 [cTSB-2-H23]">
      <seq>gccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76248" stop="79385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76548" g_stop="76629" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="183" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79089" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="517" r_length="334" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E551986" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76548" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTC</genome_strand>
        <mrna_strand>GCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285461" ref_strand="-" ref_description="SGN-E285461 [cLES-10-E2]">
      <seq>gatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgcggtgatctaacgttctgttcgtgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76264" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76564" g_stop="76629" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="167" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79054" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="465" r_length="298" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E285461" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285461" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76564" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTC</genome_strand>
        <mrna_strand>GATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGCGGTGAT-CTAACGTTCTGTTCGTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223260" ref_strand="+" ref_description="SGN-E223260 [cLEL-14-I20](-)">
      <seq>cttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcggtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76267" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76567" g_stop="76629" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="466" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="479"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E223260" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76567" e_stop="76629"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTC-GTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391307" ref_strand="+" ref_description="SGN-E391307 [TUS-47-N5](-)">
      <seq>ttcatagccggtcatctgcggcgtctttggtgccacccccccgcatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaacctagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttccactatatttcaatttatgtcttgttatttagtcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76288" stop="79415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76588" g_stop="76622" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76623" i_stop="76754" i_length="132">
            <donor d_prob="0.456" d_score="0.00"/>
            <acceptor a_prob="0.324" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76755" g_stop="76763" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="45" r_length="9" r_score="0.333"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76764" i_stop="76956" i_length="193">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="146" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78756" g_stop="79115" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="506" r_length="360" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="516"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E391307" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76588" e_stop="76622"/>
          <exon e_start="76755" e_stop="76763"/>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAGCCG-TCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</genome_strand>
        <mrna_strand>TTCATAGCCGGTCATCTGCGGCGTCTTTGGTGCCAC....................................................................................................................................CCCCCCGCA.................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAACCTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554695" ref_strand="+" ref_description="SGN-E554695 [cTSC-5-C11]">
      <seq>gtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76651" stop="88472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76957" g_stop="77057" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="108" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="409" r_length="301" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79057" i_stop="79202" i_length="146">
            <donor d_prob="0.964" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79203" g_stop="79239" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="446" r_length="37" r_score="0.622"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E554695" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76957" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
          <exon e_start="79203" e_stop="79239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTAGTCTTCTGTTATTTGTTAGAAGTTTAACTAAGACTCCGTGCGGCACTTGACAACTTACTCACGATTCTTTCATAAGAGAATATGAAGAAAGACTAAGAAAAGGCAAAGAGAACTTTAGAAAAAA</genome_strand>
        <mrna_strand>TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTCAAAAAAA..................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207883" ref_strand="+" ref_description="SGN-E207883 [cLEC-34-C24]">
      <seq>agatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76661" stop="79355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76961" g_stop="77057" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="398" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="408"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E207883" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76961" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>AGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223973" ref_strand="+" ref_description="SGN-E223973 [cLEL-19-N4](-)">
      <seq>tgctcgtggcttgctattaaattcagtgctcaatcccttgctaacataaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76666" stop="88466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76966" g_stop="77057" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78756" g_stop="79089" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="426" r_length="334" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E223973" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76966" e_stop="77057"/>
          <exon e_start="78756" e_stop="79089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTC</genome_strand>
        <mrna_strand>TGCTCGTGGCTTGCTATTAAATTCAGTGCTCAATCCCTTGCTAACATAAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238839" ref_strand="+" ref_description="SGN-E238839 [cLEL-9-D11](-)">
      <seq>ctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76668" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76968" g_stop="77057" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="391" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="404"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E238839" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76968" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239357" ref_strand="+" ref_description="SGN-E239357 [cLEL-9-D11](-)">
      <seq>gcttgctattatattcagtgctcaatccccttgctaacatgaggaatatggaaaatgatcttatacagatctcaaatgccatgatgtttggtattatgggtctcatgacaaactcacttgggtgttggtccccggggaagcaagaaaatttgatcgaatatgtttcaggcacaaacntcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgccctgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76674" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76974" g_stop="77057" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="389" r_length="304" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="402"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E239357" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76974" e_stop="77057"/>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGCTATTATATTCAGTGCTCAAT-CCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACT-ACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAAT-TGTTTCAGGCACAAAC-TCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>GCTTGCTATTATATTCAGTGCTCAATCCCCTTGCTAACATGAGGAATATGGAAAATGATCTTATACAGATCTCAAATGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTCACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATATGTTTCAGGCACAAACNTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCCCTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308907" ref_strand="+" ref_description="SGN-E308907 [cLEY-23-D16]">
      <seq>ctatcatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76706" stop="79374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77006" g_stop="77057" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78756" g_stop="79082" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="379" r_length="327" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E308907" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77006" e_stop="77057"/>
          <exon e_start="78756" e_stop="79082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACT</genome_strand>
        <mrna_strand>CTATCATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421972" ref_strand="+" ref_description="SGN-E421972 [STM-33-J18]">
      <seq>agaatgttatatcaccacaataataattgtctagtttttgcttagagcaattagaacttagaacagaatagccctgtaaaaagagctcaaactacaaaaaacctattctacaacttcatttagctcagaatcatcaaaacagtgcaaatatttcgggacgacatccacatgtttgacatcaatggtcttataaatgagtttgtgcctgaaacaattccatcaagttttcttggttcccctgggaccaacacccaagtagtttgtcatgagacccataataccaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79342" stop="78456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79042" g_stop="78755" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E421972" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79042" e_stop="78755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGTTAATATCACCACAATAATAATTGTCTAGTTTTTGCTAAGAGCAATTACAACTTAGAACTGAATAGCCCTATAAAAAGAGCTCAAACTACCAAAAACCTAATCTTTAACTTCATTTAGCTCAGAAACATCATAACAGTGCAAATATTTCAGGACAACATCCACATGTTTGACAGCAATGTTCTTATAAATGAGTTTGTGCCTGAAACAATTCGATCAAATTTTCTTGCTTCCCCGGGGACCAACACCCAAGTAGTTTGTCATGAGACCCATAATACCAAACC</genome_strand>
        <mrna_strand>AGAATGTT-ATATCACCACAATAATAATTGTCTAGTTTTTGCTTAGAGCAATTAGAACTTAGAACAGAATAGCCCTGTAAAAAGAGCTCAAACTACAAAAAACCTATTCTACAACTTCATTTAGCTCAGAATCATCAAAACAGTGCAAATATTTCGGGACGACATCCACATGTTTGACATCAATGGTCTTATAAATGAGTTTGTGCCTGAAACAATTCCATCAAGTTTTCTTGGTTCCCCTGGGACCAACACCCAAGTAGTTTGTCATGAGACCCATAATACCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224342" ref_strand="+" ref_description="SGN-E224342 [cLEL-19-N4](-)">
      <seq>catgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78449" stop="79374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78756" g_stop="79074" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="325" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="340"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E224342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78756" e_stop="79074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAA</genome_strand>
        <mrna_strand>GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378011" ref_strand="+" ref_description="SGN-E378011 [TUS-20-P4]">
      <seq>atggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78446" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78756" g_stop="79056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="312" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="330"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E378011" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78756" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292593" ref_strand="+" ref_description="SGN-E292593 [cLET-16-H18]">
      <seq>tttggtattatgggtttcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78457" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78757" g_stop="79056" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E292593" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78757" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TTTGGTATTATGGGTTTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292592" ref_strand="+" ref_description="SGN-E292592 [cLET-16-H16]">
      <seq>tttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78457" stop="79351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78757" g_stop="79056" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E292592" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78757" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232071" ref_strand="+" ref_description="SGN-E232071 [cLED-7-J3]">
      <seq>ggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78460" stop="79348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78760" g_stop="79048" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E232071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78760" e_stop="79048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGT</genome_strand>
        <mrna_strand>GGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346196" ref_strand="+" ref_description="SGN-E346196 [cTOF-23-G5]">
      <seq>cctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgttaaggtaggtgacaaggtccagaaagggcaagtggtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcacttattactcttgttgaaatctatgatcatatttatnagcttgtattanctcattttccttatgcntgctcataaanttttggaactatanttttctttataaaagttgtgactttgatgataancctctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82321" stop="80188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82021" g_stop="81914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81351" g_stop="81280" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="180" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="246" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80749" g_stop="80488" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="517" r_length="271" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="531"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E346196" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82021" e_stop="81914"/>
          <exon e_start="81351" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCAC-TATTACTCTTGTTGAAATCTATGATCATATTTAT-AGCTTGTATTA-CTCATTTTCCTTATGC-TGCTCATAAA-TTTTGGAACTATA-TTTTCTTTAT-AAAGTTGTGAC-TTGATGATAA-CCTCTA</genome_strand>
        <mrna_strand>CCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTTATTACTCTTGTTGAAATCTATGATCATATTTATNAGCTTGTATTANCTCATTTTCCTTATGCNTGCTCATAAANTTTTGGAACTATANTTTTCTTTATAAAAGTTGTGACTTTGATGATAANCCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430774" ref_strand="+" ref_description="SGN-E430774 [STM-54-E20]">
      <seq>gaaagggcaagtggtctgcatcattgaggctatgaaattgatgattgaaattgaggctgatcaagctggaaccgtagttgacatagttgcagaggatggtaaacccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtcatcttggtgtgcaacataggtggatgaagcagagtgagattcgaaagttatagagagcaaatctgtctttagctcaaggcatatctgctcagaagattggttcaccatattagtcttgttgaaatctatgatcatatttatagcttgtattcctcattttccttatgctgctcataaattttggaactatattttctttataaagtcgtgacttgatgataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81634" stop="80194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81334" g_stop="81280" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="121" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80749" g_stop="80488" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="385" r_length="264" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E430774" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81334" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCA-C-TATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAACCTCTA</genome_strand>
        <mrna_strand>GAAAGGGCAAGTGGTCTGCATCATTGAGGCTATGAAATTGATGATTGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCGTAGTTGACATAGTTGCAGAGGATGGTAAACCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTCATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAGATTCGAAAGTTATAGAGAGCAAATCTGTCTTTAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACCATATTAGTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTCCTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTCGTGACTTGATGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462497" ref_strand="+" ref_description="SGN-E462497 [cPRO-11-J8]">
      <seq>gaaagggcaagtggtctgcatcattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccgtagttgacatagttgcagaggatggtaaacccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtcatcttggtgtgcaacataggtggatgaagcagagtgagattcgaaagttatagagagcaaatctgtctttagctcaaggcatatctgctcagaagattggttcaccatattagtcttgttgaaatctatgatcatatttatagcttgtattcctcattttccttatgctgctcataaattttggaactatattttctttataaagtcgtgacttgatgataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81634" stop="80194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81334" g_stop="81280" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="121" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80749" g_stop="80488" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="385" r_length="264" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E462497" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81334" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCA-C-TATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAACCTCTA</genome_strand>
        <mrna_strand>GAAAGGGCAAGTGGTCTGCATCATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCGTAGTTGACATAGTTGCAGAGGATGGTAAACCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTCATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAGATTCGAAAGTTATAGAGAGCAAATCTGTCTTTAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACCATATTAGTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTCCTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTCGTGACTTGATGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694585" ref_strand="+" ref_description="SGN-E694585 [LH_Ea04E23](-)">
      <seq>gaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtagtactcattttccttatgctgctcataaatttcggaaaaatgttttctttataaagtcgtgcctgatgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82700" stop="80194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82400" g_stop="82308" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82214" g_stop="81914" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="394" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81351" g_stop="81280" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="466" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="532" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80749" g_stop="80494" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="787" r_length="255" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="788" polyA_stop="798"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E694585" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82400" e_stop="82308"/>
          <exon e_start="82214" e_stop="81914"/>
          <exon e_start="81351" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</genome_strand>
        <mrna_strand>GAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTAGTACTCATTTTCCTTATGCTGCTCATAAATTTCGGAAAAATGTTTTCTTTATAAAGTCGTG-CCTGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219821" ref_strand="+" ref_description="SGN-E219821 [cLEL-24-A11](-)">
      <seq>aaggtccagaaagggcaagtggtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgncctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtattactcattttccttatgctgctcataaattttggaactatattttctttataaagttgtgacttgatgataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81642" stop="80194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81342" g_stop="81280" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="129" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80749" g_stop="80494" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="386" r_length="257" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="404"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E219821" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81342" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAG-CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</genome_strand>
        <mrna_strand>AAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................NCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219869" ref_strand="+" ref_description="SGN-E219869 [cLEL-24-A11](-)">
      <seq>atagttgacatagttgcagaggatggtaagcccgttagtgtggacacggcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtattactcattttccttatgctgctcataaattttggaactatattttctttataaagttgtgacttgatgataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81181" stop="80194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80881" g_stop="80834" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80749" g_stop="80494" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="305" r_length="257" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="306" polyA_stop="323"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E219869" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80881" e_stop="80834"/>
          <exon e_start="80749" e_stop="80494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAG-CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</genome_strand>
        <mrna_strand>ATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................GCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696629" ref_strand="+" ref_description="SGN-E696629 [LH_Ea09K03](-)">
      <seq>ggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtattactcattttccttatgctgctcataaattttggaacgatattttctttataaagttgtgactgatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83000" stop="80194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82700" g_stop="82679" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="156" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82214" g_stop="81914" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="457" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81351" g_stop="81280" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="529" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="595" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80749" g_stop="80498" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="846" r_length="251" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="847" polyA_stop="861"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E696629" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82700" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="81914"/>
          <exon e_start="81351" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATG</genome_strand>
        <mrna_strand>GGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACGATATTTTCTTTATAAAGTTGTGAC-TGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695950" ref_strand="+" ref_description="SGN-E695950 [LH_Ea07N20](-)">
      <seq>gaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttggtgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattttatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccctgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtattactcattttccttatgctgctcataaattttggaactatattatcgttataaagttgtgacttgatggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82700" stop="80194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82400" g_stop="82308" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82214" g_stop="81914" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="394" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81351" g_stop="81280" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="466" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="532" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80749" g_stop="80498" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="784" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="801"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E695950" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82400" e_stop="82308"/>
          <exon e_start="82214" e_stop="81914"/>
          <exon e_start="81351" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATG</genome_strand>
        <mrna_strand>GAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGGTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTTTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCCTGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTATCGTTATAAAGTTGTGACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430775" ref_strand="-" ref_description="SGN-E430775 [STM-54-E20]">
      <seq>gaaagggcaagtggtctgcatcattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccgtagttgacatagttgcagaggatggtaaacccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtcatcttggtgtgcaacataggtggatgaagcagagtgagattcgaaagttatagagagcaaatctgtctttagctcaaggcatatctgctcagaagattggttcaccatattagtcttgttgaaataaatgatcatatttatagcttgtattcctcattttccttatgctgctcataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81634" stop="80237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81334" g_stop="81280" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="121" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80749" g_stop="80537" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="336" r_length="215" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E430775" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430775" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81334" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCA-C-TATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAAT</genome_strand>
        <mrna_strand>GAAAGGGCAAGTGGTCTGCATCATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCGTAGTTGACATAGTTGCAGAGGATGGTAAACCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTCATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAGATTCGAAAGTTATAGAGAGCAAATCTGTCTTTAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACCATATTAGTCTTGTTGAAATAAATGATCATATTTATAGCTTGTATTCCTCATTTTCCTTATGCTGCTCATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690745" ref_strand="+" ref_description="SGN-E690745 [LH_Ea04E23]">
      <seq>tatttctgtcctctctgttgcttcttcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83221" stop="80341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82922" g_stop="82817" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="160" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="294" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="81914" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="595" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81351" g_stop="81280" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="667" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="733" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80749" g_stop="80641" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="842" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E690745" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82922" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="81914"/>
          <exon e_start="81351" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGC</genome_strand>
        <mrna_strand>TATTTCTGTCCTCTCTGTTGCTTCTTCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692789" ref_strand="+" ref_description="SGN-E692789 [LH_Ea09K03]">
      <seq>tgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcttcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83265" stop="80425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82965" g_stop="82817" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="203" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="337" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="81914" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="638" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81351" g_stop="81280" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="710" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80899" g_stop="80834" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="776" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80749" g_stop="80725" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="801" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E692789" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82965" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="81914"/>
          <exon e_start="81351" e_stop="81280"/>
          <exon e_start="80899" e_stop="80834"/>
          <exon e_start="80749" e_stop="80725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGAT</genome_strand>
        <mrna_strand>TGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCTTCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701513" ref_strand="+" ref_description="SGN-E701513 [FA16AG04]">
      <seq>gaggcttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccccatcaagctcccaatttccctcatagccatacagacaaaattacaatattttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggcctcaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgttaaggtaggtgacaaggtccagaaagggcaagtggtctgcattattgaggctatgaaattgatgaaatgaattgangctgatncagctggaaccatagttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83394" stop="80571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83098" g_stop="82817" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="336" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="470" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="81914" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="771" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81351" g_stop="81280" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="843" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80899" g_stop="80871" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="844" r_stop="872" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E701513" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83098" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="81914"/>
          <exon e_start="81351" e_stop="81280"/>
          <exon e_start="80899" e_stop="80871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACAT</genome_strand>
        <mrna_strand>GAGGCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAAATGAATTGAN............................................................................................................................................................................................................................................................................................................................................................................................GCTGATNCAGCTGGAACCATAGTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718988" ref_strand="+" ref_description="SGN-E718988 [FC06BG03]">
      <seq>atcggccgaattggcctctgccagcttaaatcgcatcgtcccccttctccctcgtgtgtatcgcccccctcccttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccccatcaagctcccaatttccctcatagccatacagacaaaattacaatattttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcaaatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggcctcaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgttaaggtaggtgacaaggtccagaaagggcaagtggtctgcattattgaggctatgaaattgatgaatgaaattgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83457" stop="80979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83166" g_stop="82817" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="404" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="538" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="81914" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="839" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81351" g_stop="81280" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="911" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E718988" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83166" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="81914"/>
          <exon e_start="81351" e_stop="81280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCCATCTGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG</genome_strand>
        <mrna_strand>ATCGGCCGAATTGGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAAATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692110" ref_strand="+" ref_description="SGN-E692110 [LH_Ea07N20]">
      <seq>tgtatcgtgccgaattcggcacgaggcatagccatacagaccttattacaatcttttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcttcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgacattgatgaatgaaattgaggctgaatcagctggaaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83280" stop="80971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82998" g_stop="82817" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="208" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="262" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="396" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="81914" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="697" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81351" g_stop="81280" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="769" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E692110" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82998" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="81914"/>
          <exon e_start="81351" e_stop="81280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG</genome_strand>
        <mrna_strand>CATAGCCATACAGACCTTATTACAATCTTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCTTCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGACATTGATGAATGAAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719940" ref_strand="+" ref_description="SGN-E719940 [FC09BC12]">
      <seq>gggcgattggcggcaaatcggccgaattgatctgcctctgccaccttaaatcgcatcgtcccccttctccctcgtgtgtatcgcccccctcccttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccccatcaagctcccaatttccctcatagccatacagacaaaattacaatattttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcaaatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggcctcaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83457" stop="81619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83157" g_stop="82817" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="370" r_length="341" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="424" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="558" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="81919" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="854" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E719940" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83157" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="81919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTG</genome_strand>
        <mrna_strand>ATCTGCCTCTGCCACCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAAATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691443" ref_strand="+" ref_description="SGN-E691443 [LH_Ea06C01]">
      <seq>tttaaatcgcatcgtccccctactccctcgtgtgtatcgcccccctcccttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccctcaaagctcccaatttccctcatagccatacagacaaaattacaatcttttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcttcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83441" stop="81620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83142" g_stop="82817" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="379" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="513" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="81920" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="808" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E691443" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83142" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="81920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTT</genome_strand>
        <mrna_strand>TTTAAATCGCATCGTCCCCCTACTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAA-CCCCCTCAAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATCTTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCTTCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730857" ref_strand="+" ref_description="SGN-E730857 [LA25BF09]">
      <seq>catttaatcgtcccccttctccctcgtgtgtatcgcccccctcccttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccccatcaagctcccaatttccctcatagccatacagacaaaattacaatattttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggcctcaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccactgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83432" stop="81621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83138" g_stop="82817" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="376" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="510" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="81921" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="804" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E730857" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83138" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="81921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTT</genome_strand>
        <mrna_strand>CATTTAATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCACTGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312663" ref_strand="+" ref_description="SGN-E312663 [cLEZ-20-J24]">
      <seq>tcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83235" stop="81853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82935" g_stop="82817" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="173" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="307" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="82153" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="369" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E312663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82935" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="82153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTA</genome_strand>
        <mrna_strand>TCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415436" ref_strand="+" ref_description="SGN-E415436 [STM-21-G6]">
      <seq>catcgtcccccttctccctcgtgtgtatcgccccctccctcccttttctccaatttcggatttccccctgctaaatctcatcaatttcaccgtccaattctcttctacaaaaacccttcaaagctcccaatttccctcatagccatatagacaaattacagtcttttcttgaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctttccgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtcttcaggggtccagtcgcatccaatctcaggtgcttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtttctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcatttatgtctcaggcagccgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83433" stop="81854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83133" g_stop="82817" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="371" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.919" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="505" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="82154" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="566" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E415436" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83133" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="82154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTCCCCCTTCTCCCTCGTGTGTATCG--CCC-CCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTT</genome_strand>
        <mrna_strand>CATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCTCCCTCCCTTTTCTCCAATTTCGGATTTCCCCCTGCTAAATCTCATCAATTTCACCGTCCAATTCTCTTCTACAAAA-ACCCTTCAAAGCTCCCAATTTCCCTCATAGCCATATAGAC-AAATTACAGTCTTTTCTTG-AAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTTTCCGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTCTTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGCTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTTTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTTATGTCTCAGGCAGCCGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366152" ref_strand="+" ref_description="SGN-E366152 [cLPT-15-P14]">
      <seq>tcaaagctcccaatttccctcatagccattcagacaaaattacaatcttttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtttctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83317" stop="81886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83017" g_stop="82817" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="256" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="390" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="82186" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="419" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E366152" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83017" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="82186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-AAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGC</genome_strand>
        <mrna_strand>TCAAAGCTCCCAATTTCCCTCATAGCCATTCAGACAAAATTACAATCTTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTTTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437000" ref_strand="+" ref_description="SGN-E437000 [cSTA-2-I15]">
      <seq>catagacccccttctccctcgtgtgtatcgccccctccctcccttttctccaatttcggatttccccctgctaaatctcatcaatttcaccgcccaattctcttctacaaaaacccttcaaagctcccaatttccctcatagccatatagacaaattacagtcttttcttgaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctttccgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtcttcaggggtccagtcgcatccaatctcaggtgcttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtttctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcatttatgtctcaggcagccgatcttgtggagcttgtggattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83433" stop="82003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83133" g_stop="82817" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82732" g_stop="82679" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="371" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.919" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82441" g_stop="82308" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="505" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82214" g_stop="82202" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="518" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E437000" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83133" e_stop="82817"/>
          <exon e_start="82732" e_stop="82679"/>
          <exon e_start="82441" e_stop="82308"/>
          <exon e_start="82214" e_stop="82202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTCCCCCTTCTCCCTCGTGTGTATCG-CCCC--CCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCA</genome_strand>
        <mrna_strand>CATAGACCCCCTTCTCCCTCGTGTGTATCGCCCCCTCCCTCCCTTTTCTCCAATTTCGGATTTCCCCCTGCTAAATCTCATCAATTTCACCGCCCAATTCTCTTCTACAAAA-ACCCTTCAAAGCTCCCAATTTCCCTCATAGCCATATAGAC-AAATTACAGTCTTTTCTTG-AAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTTTCCGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTCTTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGCTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTTTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTTATGTCTCAGGCAGCCGATCTTGTGGA.............................................................................................GCTTGTGGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615782" ref_strand="+" ref_description="SGN-E615782 [65584]">
      <seq>tgcaacaaatgaaagatggcagctgcaacaactccggcaattattttcagcgtactttcaaatttagccatcgacacaacggcagtgaactcttcgattccttcgagcttcaacaagttgtcaaacagctaaacctcgccctcgttaaagcatctgctgaatcatcttctcccattacatctgctgttatgaattctcctttttacaccaagtgcttgggaggttcttacaagcaaaatgctaaagcttctagaaccaggagaatttcttactcacaaattggagttgagaacagagcagattgtagaagcgcagggattaatagtatatttctacgattttggaacatggcaaaacaggggtttttcagaggtaaacgaaaccccggcagttaaatgaagaggtgaattcaggattttaaatggtaagtgggataacattaattgtgatcactgctactttataataatactcaatgtatatgcccccggaacttctgtcttcctcgtccttcaaatttccagcgtgactgtgttgtatgaatgaaccaattaattttggagtcatttattttgaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="-" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86814" stop="85629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86514" g_stop="85978" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="576" polyA_stop="588"/>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="-" ref_id="SGN-E615782" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86514" e_stop="85978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAACAATGAAAGATGGCAGCTGCAACAACTCCGGCAATTATTTTCACCGTACTTTCAAATTCAGCCATCGACACAACGGCAGTGAACTATTCGATTCGTTCGAGCTTCAACAAGTCGTCAAACAGCTAAACCTTGCCCTCATTAAAGCATCTGCTGAATCATCTTCTCCGATTACATCTGCTGTTCTCAATTCTCCTTTTTACACCAAGTGCTTGGGAGGTTCTTACAAGCAAAATGCTAAATCTTCTAGAACCAGGAGAATTTCGTACTCACAAATTGGAGTTGAGAACACAGCAGATTGTAAAAGCACGGGGATTAATTGTATATTTCTACGATTTTGGAACATGGCAAAACAGGGGTTTTTCAGAGGTAAACCGAAACCAGGACAGCTAATTGCAGAAGCGAATTCAGAATTTTAAATTTGTGAGTGCGATTAACATCAATTGTGATCATTGCTACTTTATAATAATACTCAAATGTATATTGCCCCCGAACTGCTGTCTTCCTCGCACTTCAAGTTTCCAGAGTGAATAT</genome_strand>
        <mrna_strand>TGCAACAAATGAAAGATGGCAGCTGCAACAACTCCGGCAATTATTTTCAGCGTACTTTCAAATTTAGCCATCGACACAACGGCAGTGAACTCTTCGATTCCTTCGAGCTTCAACAAGTTGTCAAACAGCTAAACCTCGCCCTCGTTAAAGCATCTGCTGAATCATCTTCTCCCATTACATCTGCTGTTATGAATTCTCCTTTTTACACCAAGTGCTTGGGAGGTTCTTACAAGCAAAATGCTAAAGCTTCTAGAACCAGGAGAATTTCTTACTCACAAATTGGAGTTGAGAACAGAGCAGATTGTAGAAGCGCAGGGATTAATAGTATATTTCTACGATTTTGGAACATGGCAAAACAGGGGTTTTTCAGAGGTAAA-CGAAACCCCGGCAGTTAAATGAAGAGGTGAATTCAGGATTTTAAA-TGGTAAGTGGGA-TAACATTAATTGTGATCACTGCTACTTTATAATAATACTC-AATGTATATGCCCCCGGAACTTCTGTCTTCCTCGTCCTTCAAATTTCCAGCGTGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287143" ref_strand="+" ref_description="SGN-E287143 [cLES-6-M18]">
      <seq>ctgtgaatgcaatggtctcaaagaagttgctaactactggaaacaagtgattcaggtgaatgactaccaaaagaatcggtttgttaaccgagttgtctcctctatgttcaacacagtttcaggcaagaagattgctatccttggatttgctttcaagaaagatacaggtgacactagagagacaccagcaattgatgtgtgcaaaggcctattgggagacaatgctaacttgagcatatatgatccacaggtcactgaggatcaaatccgaaaggatctgtcaatgaaaaagtttgattgggataatccaattcacctccagccaatgagccccactgtgatgaagcaactcaatgtagtatgggatgcttatgcagccacaaaaggcgcccacggcctctgtcttttgaccgagtgggatgagttcaagactcttgatttcaagaagatttatgataacatgcaaaaacctgcatttgtgtttgatggaaggaacattgttgatgaacagaagctcagagaaatcgggttcatcgtctactccattgggaaacctttagatggatggctcaaggatatgcctgctgtggcataacccccctggaataagcactgaacatgagagcaaaatctatttatatttttccagttcttgtcttttccattcaagcttacaattgttgtttcctagtagcattgttaaaaatgcttacctttatatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90279" stop="91602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90579" g_stop="91302" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E287143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90579" e_stop="91302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCAT</genome_strand>
        <mrna_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372369" ref_strand="+" ref_description="SGN-E372369 [TUS-30-N23]">
      <seq>ctgtgaatgcaatggtctcaaagaagttgctaactactggaaacaagtgattcaggtgaatgactaccaaaagaatcggtttgttaaccgagttgtctcctctatgttcaacacagtttcaggcgagaagattgctatccttggatttgctttcaagaaagatacaggtgacactagagagacaccagcaattgatgtgtgcaaaggcctattgggagacaatgctaacttgagcatatatgatccacaggtcactgaggatcaaatccgaaaggatctgtcaatgaaaaagtttgattgggataatccaattcacctccagccaatgagccccactgtgatgaagcaactcaatgtagtatgggatgcttatgcagccacaaaaggcgcccacggcctctgtcttttgaccgagtgggatgagttcaagactcttgatttcaagaagatttatgataacatgcaaaaacctgcatttgtgtttgatggaaggaacattgttgatgaacagaagctcagagaaatcgggttcatcgtctactccattgggaaacctttagatggatggctcaaggatatgcctgctgtggcataacccccctggattaagcactgaacatgagagcaaaatctatttatatttttccagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90279" stop="91530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90579" g_stop="91230" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E372369" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90579" e_stop="91230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTC</genome_strand>
        <mrna_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCGAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGATTAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372368" ref_strand="+" ref_description="SGN-E372368 [TUS-30-N23](-)">
      <seq>taccaaaagaatcggtttgttaaccaagttgtctcctctatgttcaacacagtttcaggcaaaaaaattgctatccttggatttgctttcaagaaagatacaggtgacactagagagacaccagcaattgatgtgtgcaaaggcctattgggagacaatgctaacttgagcatatatgatccacaggtcactgaggatcaaatccgaaaggatctgtcaatgaaaaagtttgattgggataatccaattcacctccagccaatgagccccactgtgatgaagcaactcaatgtagtatgggatgcttatgcagccacaaaaggcgcccacggcctttgtcttttgaccgagtgggatgagttcaagactcttgatttcaagaagatttatgataacatgcaaaaacctgcatttgtgtttgatggaaggaacattgttgatgaacagaagctcagagaaatcgggttcatcgtctactccattgggaaacctttagatggatggctcaaggatatgcctgctgtggcataacccccctggaataagcactgaacatgagagcaaaatctatttatatttttccagtttttgttttttccattcaagcttacaattgttgtttcctagtagcattgttaaaaatgcttacctttatatcatgttttttttgtgtgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90343" stop="91620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90643" g_stop="91326" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E372368" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90643" e_stop="91326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCATGTTTTTTTTGTGTGTGAACTTCAG</genome_strand>
        <mrna_strand>TACCAAAAGAATCGGTTTGTTAACCAAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAAAAAATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTTTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTTTTGTTTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCATGTTTTTTTTGTGTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428456" ref_strand="+" ref_description="SGN-E428456 [STM-50-I8]">
      <seq>ctttgacccacctttaccctctattttttcgtcatcaattttttccccaattccaatttctcatcttcttccccttcaatcgaccttgatttttcttgttgaagatcaaatcaacctccgatccttctaattcgtttcattctctatcgattggtacctcttttggatctatccgtctggaaatctaattccgagttaaatatggtgcaaaaaagaccatgcagtgaagaaaagttgtatgaggtttcatctaagcagccgagacatgtagaaccgagtagtcagctagtttcctttttgcagtttccgtgtgaatcagtggctcctaactcttacacttcaggtggagataaggagaaattttcagaagtcaaagctttcagtgagaagagacctgatagttgcgatgtggctgcagttcctgtttcttccgagaaagcaattgagacgagcattcatggctctgcttcaaactcttcttggaactctagtagcaccagcaaagaagacatcaggtccgaggtgccttttcatgtattgacggctttctaatatttacatactgatcccttcatcagagttgttattcatccaatggaggtctattcccctcttttgacaatcctcctcggaaatcggttcccattggaccagatttccaagccgaattaccagaatggggtgcatatgattgtaaaaatatatccatgaaggagagcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93897" stop="96522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94197" g_stop="94391" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94392" i_stop="95476" i_length="1085">
            <donor d_prob="0.687" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95477" g_stop="95624" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="343" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95625" i_stop="95840" i_length="216">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95841" g_stop="96222" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="724" r_length="381" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E428456" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94197" e_stop="94391"/>
          <exon e_start="95477" e_stop="95624"/>
          <exon e_start="95841" e_stop="96222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGACCCACCTTTACCCTCTATTTTTTCGTCAACAATTTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAGGTTAGGGTTTCAGATCTATAGGTTTTTTCATCAGATCTGTTCGATCTACCTTTATTTCATGAAATTAATTCAGTTTCTAGCTTGATTTTGTTATCATCTCTTGATTTCTTGAGAAAAAAAAAGATCGATTTTTTTTTTATTTTGAGGATTTTCTTGTTATATCAGCTTTTGTTCGTGCTCGATCTGCGATTCGTCGCTTCATTTCTGATCGATTTGATTATTTTTTGAATTTTTTTACATCGAATTCAAATTTGGGGATCTAGGGTTAGGGTTAGGTTTCTTAATTCATAAAATTGTAATTAAATCATTTTAGGTCACGATTTCCAGAACAAAACCAGTAAAAATACGTCCGATTTCCTGATACGGACTGTCGATTGATAGTAATTAGCTCAAAATCAAAGATCTCATCTTTTTAAAAAAAAAATTGTTTATTAAATAAACAAAAATATATATTTTTTAATATTTTAGATTTTTACTTTCAAAAACTCTGAGCCACTCCATTTTCACTGTACATGTGCCACGTGTTACAAATTAGAAACTTATACAAATGATTACTATGTCCTCTACCTCTTGAGTGGCAACCTTTTCAACTATTACTTTGATTCTTTGCTTGAAACAGAGTGAACTGTGTATCTACTTGAATGTCCAACTGTGCTTTGACAATTTCTAGTCTTGTCTACATTTGTTCTTTATTATATCATATGGGGTGTTCTATGTTGCTACTTCCCTCAACATACTCTCTGAATTTTTTCTCTTGTTCTTTATTAGTATGCTATTGATAGTTTAGTATCTGTTGTTGTGCAGTATTTTGTAAGTATCTTTTTTGGGGGTTATGGAAGTTATATTTCTGTAGTTAGAAAATATCAATTTTGTGGTTAGCTATGACCAAAAAGATTTCATTTTTGTGTTCAATGCTGGATGTTGTGTCTACATCTCTGTCATGTACTTTTTGTGTTTGCAGAATGCTCTGGATACCGTTTGTGTTTTATGGAATTGTTTGCGTTCTTTGAATTCATGGAACTTAATTCTCCTCCACTTTCCCTTTTCTGAATCTGCTTAACACCTTCTTCAACTTCCTTTTGCAGTTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAGGTTAGGAAGAGATTAATCTATCAAATTCCTGAAATGATTTACGTTGTTTTAACTGCTTTGTGGATAATGGTTAGAATGGTTTTATTTACTCAAACTTAAGATACTCTTGGAAAACAGCTTCTCATTAGGAGGTTGCTCTTTTAGCAGCACGTTTGGATGTTGAATTAATTTGTGGATTTTCATCCTTGGATGATCTAAATTTTTGGTCTTTGGTAGGTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGC-TTCTAAATATTACAGTAGTGAT-CCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGGTTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATAGTAAAAATATATCCGTGAAGGAGAGCACTCA</genome_strand>
        <mrna_strand>CTTTGACCCACCTTTACCCTCTATTTTTTCGTCATCAATTTTTTCCCCAATTCCAATTTCTCATCTTCTTCCCCTTCAATCGACCTTGATTTTTCTTGTTGAAGATCAAATCAACCTCCGATCCTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCTAATTCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGGTGCAAAAAAGACCATGCAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTAGTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCTAACTCTTACACTTCAG........................................................................................................................................................................................................................GTGGAGATAAGGAGAAATTTTCAGAAGTCAAAGCTTTCAGTGAGAAGAGACCTGATAGTTGCGATGTGGCTGCAGTTCCTGTTTCTTCCGAGAAAGCAATTGAGACGAGCATTCATGGCTCTGCTTCAAACTCTTCTTGGAACTCTAGTAGCACCAGCAAAGAAGACATCAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTTCTAATATTTACA-TACTGATCCCTTCA-TCAGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTT-GACAATCCTCCTCGGAAATCGGTTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATTGTAAAAATATATCCATGAAGGAGAGCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479988" ref_strand="+" ref_description="SGN-E479988 [cSTD-12-I23]">
      <seq>ctttgacccacctttaccctctattttttcgtcatcaattttttccccaattccaatttctcatcttcttccccttcaatcgaccttgatttttcttgttgaagatcaaatcaacctccgatccttctaattcgtttcattctctatcgattggtacctcttttggatctatccgtctggaaatctaattccgagttaaatatggtgcaaaaaagaccatgcagtgaagaaaagttgtatgaggtttcatctaagcagccgagacatgtagaaccgagtagtcagctagtttcctttttgcagtttccgtgtgaatcagtggctcctaactcttacacttcaggtggagataaggagaaattttcagaagtcaaagctttcagtgagaagagacctgatagttgcgatgtggctgcagttcctgtttcttccgagaaagcaattgagacgagcattcatggctctgcttcaaactcttcttggacctctagtagcaccagcaaagaagacatcaggtccgaggtgccttttcatgtattgacggcttctaaatattacaatactgatccttcattcagagttgttattcatccaatggaggtctattcccctcttttgaacaatcctcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93897" stop="96429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94197" g_stop="94391" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94392" i_stop="95476" i_length="1085">
            <donor d_prob="0.687" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95477" g_stop="95624" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="343" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95625" i_stop="95840" i_length="216">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95841" g_stop="96129" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="632" r_length="289" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E479988" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94197" e_stop="94391"/>
          <exon e_start="95477" e_stop="95624"/>
          <exon e_start="95841" e_stop="96129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGACCCACCTTTACCCTCTATTTTTTCGTCAACAATTTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAGGTTAGGGTTTCAGATCTATAGGTTTTTTCATCAGATCTGTTCGATCTACCTTTATTTCATGAAATTAATTCAGTTTCTAGCTTGATTTTGTTATCATCTCTTGATTTCTTGAGAAAAAAAAAGATCGATTTTTTTTTTATTTTGAGGATTTTCTTGTTATATCAGCTTTTGTTCGTGCTCGATCTGCGATTCGTCGCTTCATTTCTGATCGATTTGATTATTTTTTGAATTTTTTTACATCGAATTCAAATTTGGGGATCTAGGGTTAGGGTTAGGTTTCTTAATTCATAAAATTGTAATTAAATCATTTTAGGTCACGATTTCCAGAACAAAACCAGTAAAAATACGTCCGATTTCCTGATACGGACTGTCGATTGATAGTAATTAGCTCAAAATCAAAGATCTCATCTTTTTAAAAAAAAAATTGTTTATTAAATAAACAAAAATATATATTTTTTAATATTTTAGATTTTTACTTTCAAAAACTCTGAGCCACTCCATTTTCACTGTACATGTGCCACGTGTTACAAATTAGAAACTTATACAAATGATTACTATGTCCTCTACCTCTTGAGTGGCAACCTTTTCAACTATTACTTTGATTCTTTGCTTGAAACAGAGTGAACTGTGTATCTACTTGAATGTCCAACTGTGCTTTGACAATTTCTAGTCTTGTCTACATTTGTTCTTTATTATATCATATGGGGTGTTCTATGTTGCTACTTCCCTCAACATACTCTCTGAATTTTTTCTCTTGTTCTTTATTAGTATGCTATTGATAGTTTAGTATCTGTTGTTGTGCAGTATTTTGTAAGTATCTTTTTTGGGGGTTATGGAAGTTATATTTCTGTAGTTAGAAAATATCAATTTTGTGGTTAGCTATGACCAAAAAGATTTCATTTTTGTGTTCAATGCTGGATGTTGTGTCTACATCTCTGTCATGTACTTTTTGTGTTTGCAGAATGCTCTGGATACCGTTTGTGTTTTATGGAATTGTTTGCGTTCTTTGAATTCATGGAACTTAATTCTCCTCCACTTTCCCTTTTCTGAATCTGCTTAACACCTTCTTCAACTTCCTTTTGCAGTTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAGGTTAGGAAGAGATTAATCTATCAAATTCCTGAAATGATTTACGTTGTTTTAACTGCTTTGTGGATAATGGTTAGAATGGTTTTATTTACTCAAACTTAAGATACTCTTGGAAAACAGCTTCTCATTAGGAGGTTGCTCTTTTAGCAGCACGTTTGGATGTTGAATTAATTTGTGGATTTTCATCCTTGGATGATCTAAATTTTTGGTCTTTGGTAGGTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCG</genome_strand>
        <mrna_strand>CTTTGACCCACCTTTACCCTCTATTTTTTCGTCATCAATTTTTTCCCCAATTCCAATTTCTCATCTTCTTCCCCTTCAATCGACCTTGATTTTTCTTGTTGAAGATCAAATCAACCTCCGATCCTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCTAATTCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGGTGCAAAAAAGACCATGCAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTAGTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCTAACTCTTACACTTCAG........................................................................................................................................................................................................................GTGGAGATAAGGAGAAATTTTCAGAAGTCAAAGCTTTCAGTGAGAAGAGACCTGATAGTTGCGATGTGGCTGCAGTTCCTGTTTCTTCCGAGAAAGCAATTGAGACGAGCATTCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCAAAGAAGACATCAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAATACTGATCCTTCATTCAGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTGAACAATCCTCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539220" ref_strand="+" ref_description="SGN-E539220 [TUS-58-N21]">
      <seq>tttttccccaaaatcaatttctcatcttctacccctttaatcgaccttgatttttcttcttgaagatcaaatcaaccctccgatacttctaattcggttcattctcaatcgattggtacctcttttggatctatccgtctggaaatcgaattccgagttaaatatggtgcaaaaaagaccatacagtgaagaaaagttgtatgaggtttcatctaaacagccgatacatgtaaaaccgagtactcagctagtttcctttttgcagtttccgtgtgaatcagtggctcccaactcttacacttcaggtggcgatgaggagaaattttcataagtcagagcttttactgagaaaagacctgatagttgccatgtgactgctgtccctgtttcttcacagaaagcaattgagacgagcatccagggctctgcttcaaactcttcttggacctctagtagcaccagcgaagaagacattacgtccgaggtgacttttcatgtattgacggcttctaaatattacagtagtgatcctccattccgagttgttattcatccaatggaggtctattcccctcttttcaacaatcctcctcggaaatcggctgcccattggaccagatttccaagccgaattaccagaatgccgtgcatatgatagtaaaaatatatccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93936" stop="96508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94236" g_stop="94391" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94392" i_stop="95476" i_length="1085">
            <donor d_prob="0.687" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95477" g_stop="95624" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="305" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95625" i_stop="95840" i_length="216">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95841" g_stop="96208" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="674" r_length="369" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E539220" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94236" e_stop="94391"/>
          <exon e_start="95477" e_stop="95624"/>
          <exon e_start="95841" e_stop="96208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAA-CCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAGGTTAGGGTTTCAGATCTATAGGTTTTTTCATCAGATCTGTTCGATCTACCTTTATTTCATGAAATTAATTCAGTTTCTAGCTTGATTTTGTTATCATCTCTTGATTTCTTGAGAAAAAAAAAGATCGATTTTTTTTTTATTTTGAGGATTTTCTTGTTATATCAGCTTTTGTTCGTGCTCGATCTGCGATTCGTCGCTTCATTTCTGATCGATTTGATTATTTTTTGAATTTTTTTACATCGAATTCAAATTTGGGGATCTAGGGTTAGGGTTAGGTTTCTTAATTCATAAAATTGTAATTAAATCATTTTAGGTCACGATTTCCAGAACAAAACCAGTAAAAATACGTCCGATTTCCTGATACGGACTGTCGATTGATAGTAATTAGCTCAAAATCAAAGATCTCATCTTTTTAAAAAAAAAATTGTTTATTAAATAAACAAAAATATATATTTTTTAATATTTTAGATTTTTACTTTCAAAAACTCTGAGCCACTCCATTTTCACTGTACATGTGCCACGTGTTACAAATTAGAAACTTATACAAATGATTACTATGTCCTCTACCTCTTGAGTGGCAACCTTTTCAACTATTACTTTGATTCTTTGCTTGAAACAGAGTGAACTGTGTATCTACTTGAATGTCCAACTGTGCTTTGACAATTTCTAGTCTTGTCTACATTTGTTCTTTATTATATCATATGGGGTGTTCTATGTTGCTACTTCCCTCAACATACTCTCTGAATTTTTTCTCTTGTTCTTTATTAGTATGCTATTGATAGTTTAGTATCTGTTGTTGTGCAGTATTTTGTAAGTATCTTTTTTGGGGGTTATGGAAGTTATATTTCTGTAGTTAGAAAATATCAATTTTGTGGTTAGCTATGACCAAAAAGATTTCATTTTTGTGTTCAATGCTGGATGTTGTGTCTACATCTCTGTCATGTACTTTTTGTGTTTGCAGAATGCTCTGGATACCGTTTGTGTTTTATGGAATTGTTTGCGTTCTTTGAATTCATGGAACTTAATTCTCCTCCACTTTCCCTTTTCTGAATCTGCTTAACACCTTCTTCAACTTCCTTTTGCAGTTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAGGTTAGGAAGAGATTAATCTATCAAATTCCTGAAATGATTTACGTTGTTTTAACTGCTTTGTGGATAATGGTTAGAATGGTTTTATTTACTCAAACTTAAGATACTCTTGGAAAACAGCTTCTCATTAGGAGGTTGCTCTTTTAGCAGCACGTTTGGATGTTGAATTAATTTGTGGATTTTCATCCTTGGATGATCTAAATTTTTGGTCTTTGGTAGGTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGG-TTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATAGTAAAAATATATCCGTG</genome_strand>
        <mrna_strand>TTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCCTCCGATACTTCTAATTCGGTTCATTCTCAATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAACAGCCGATACATGTAAAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAG........................................................................................................................................................................................................................GTGGCGATGAGGAGAAATTTTCATAAGTCAGAGCTTTTACTGAGAAAAGACCTGATAGTTGCCATGTGACTGCTGTCCCTGTTTCTTCACAGAAAGCAATTGAGACGAGCATCCAGGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTACGTCCGAGGTGACTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGGCTGCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGCCGTGCATATGATAGTAAAAATATATCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283497" ref_strand="+" ref_description="SGN-E283497 [cLER-12-E7]">
      <seq>ttttccccaaaatcaatttctcatcttctacccctttaatcgaccttgatttttcttcttgaagatcaaatcaacctccgatacttctaattcgtttcattctctatcgattggtacctcttttggatctatccgtctggaaatcgaattccgagttaaatatggtgcaaaaaagaccatacagtgaagaaaagttgtatgaggtttcatctaagcagccgagacatgtagaaccgagtactcagctagtttcctttttgcagtttccgtgtgaatcagtggctcccaactcttacacttcaggtggcgatgaggagaaattttcagaagtcagagcttttagtgagaaaagacctgatagttgcgatgtgactgctgtccctgtttcttcagagaaagcaattgagacgagcatccatggctctgcttcaaactcttcttggacctctagtagcaccagcgaagaagacattaggtccgaggtgccttttcatgtattgacggcttctaaatattacagtagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93937" stop="96365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94237" g_stop="94391" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94392" i_stop="95476" i_length="1085">
            <donor d_prob="0.687" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95477" g_stop="95624" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="303" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95625" i_stop="95840" i_length="216">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95841" g_stop="96065" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="528" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E283497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94237" e_stop="94391"/>
          <exon e_start="95477" e_stop="95624"/>
          <exon e_start="95841" e_stop="96065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAGGTTAGGGTTTCAGATCTATAGGTTTTTTCATCAGATCTGTTCGATCTACCTTTATTTCATGAAATTAATTCAGTTTCTAGCTTGATTTTGTTATCATCTCTTGATTTCTTGAGAAAAAAAAAGATCGATTTTTTTTTTATTTTGAGGATTTTCTTGTTATATCAGCTTTTGTTCGTGCTCGATCTGCGATTCGTCGCTTCATTTCTGATCGATTTGATTATTTTTTGAATTTTTTTACATCGAATTCAAATTTGGGGATCTAGGGTTAGGGTTAGGTTTCTTAATTCATAAAATTGTAATTAAATCATTTTAGGTCACGATTTCCAGAACAAAACCAGTAAAAATACGTCCGATTTCCTGATACGGACTGTCGATTGATAGTAATTAGCTCAAAATCAAAGATCTCATCTTTTTAAAAAAAAAATTGTTTATTAAATAAACAAAAATATATATTTTTTAATATTTTAGATTTTTACTTTCAAAAACTCTGAGCCACTCCATTTTCACTGTACATGTGCCACGTGTTACAAATTAGAAACTTATACAAATGATTACTATGTCCTCTACCTCTTGAGTGGCAACCTTTTCAACTATTACTTTGATTCTTTGCTTGAAACAGAGTGAACTGTGTATCTACTTGAATGTCCAACTGTGCTTTGACAATTTCTAGTCTTGTCTACATTTGTTCTTTATTATATCATATGGGGTGTTCTATGTTGCTACTTCCCTCAACATACTCTCTGAATTTTTTCTCTTGTTCTTTATTAGTATGCTATTGATAGTTTAGTATCTGTTGTTGTGCAGTATTTTGTAAGTATCTTTTTTGGGGGTTATGGAAGTTATATTTCTGTAGTTAGAAAATATCAATTTTGTGGTTAGCTATGACCAAAAAGATTTCATTTTTGTGTTCAATGCTGGATGTTGTGTCTACATCTCTGTCATGTACTTTTTGTGTTTGCAGAATGCTCTGGATACCGTTTGTGTTTTATGGAATTGTTTGCGTTCTTTGAATTCATGGAACTTAATTCTCCTCCACTTTCCCTTTTCTGAATCTGCTTAACACCTTCTTCAACTTCCTTTTGCAGTTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAGGTTAGGAAGAGATTAATCTATCAAATTCCTGAAATGATTTACGTTGTTTTAACTGCTTTGTGGATAATGGTTAGAATGGTTTTATTTACTCAAACTTAAGATACTCTTGGAAAACAGCTTCTCATTAGGAGGTTGCTCTTTTAGCAGCACGTTTGGATGTTGAATTAATTTGTGGATTTTCATCCTTGGATGATCTAAATTTTTGGTCTTTGGTAGGTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATC</genome_strand>
        <mrna_strand>TTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAG........................................................................................................................................................................................................................GTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588878" ref_strand="+" ref_description="SGN-E588878 [42440]">
      <seq>cctcctcggaaatcggttcccattggaccagatttccaagccgaattaccagaatggggtgcatatgattgtaaaaatatatccatgaaggagagcactcaagaaagcccaaatcttccatctcaagctctagaatcaggttttgtggatcatcatgatgaagaaaataaacttgctgggacatgtatcattccaatgcctaaattggaattacctgcagaccacgaggagaatgttggagcaggaaaaattgggtgttcctgtgaagatgctggttcctttggatgtgttcggctgcacatcatggaagcaagggagaaacttaaggcggccttgggtgaggaaacatttgttaggttgggtgtttatgatatgggagagatagtggcagcgaaatggagtgatgaggaagaggaattatttcatgaagttgtattttccaatcctgcagcactaggcaagaatttctgggagcaccttgctgttgaatttccttcacggagcaagagagatctcgttagctattacttcaatgtctttattttgcggaagcgtgccaagcagaataggtttgacccatcaaatatagacagtgataacgatgaatggcaggagatcgatgacgatgttgcggctacgggagctcaaatgaccagatgaagatgaggattctatggttgaatcaccaatatatcaaaattatcctggtcacaatgagatatatgtgactgaaaaacagcatatgatgaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95822" stop="97175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96122" g_stop="96875" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E588878" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96122" e_stop="96875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCGGAAATCGGTTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATAGTAAAAATATATCCGTGAAGGAGAGCACTCAAGAAAGCTCAAATCTTCCATCTCAAGCTCTAGAATCAGATTTTGTAGATCATCATGATGAAGAAAATAAACTTGCTGGGACATGTATCATCCCAATGCCTAAATTGGAATCACCTGCAGACCATGAGGAGAATGTTGGAGCAGGAAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGA-CAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAG</genome_strand>
        <mrna_strand>CCTCCTCGGAAATCGGTTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATTGTAAAAATATATCCATGAAGGAGAGCACTCAAGAAAGCCCAAATCTTCCATCTCAAGCTCTAGAATCAGGTTTTGTGGATCATCATGATGAAGAAAATAAACTTGCTGGGACATGTATCATTCCAATGCCTAAATTGGAATTACCTGCAGACCACGAGGAGAATGTTGGAGCAGGAAAAATTGGGTGTTCCTGTGAAGATGCTGGTTCCTTTGGATGTGTTCGGCTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGCGAAATGGAGTGATGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCACTAGGCAAGAATTTCTGGGAGCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTCGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATCGATGACGATGTTGCGGCTACGGGAGCTCAAATGACCAGATGAAGATGAGGATTCTATGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAAC-AGCATATGATGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207993" ref_strand="+" ref_description="SGN-E207993 [cLEC-34-L12]">
      <seq>aagaattgggtgctcctgtggagatgctggttcctttggatgtgttcggttgcacatcatggaagcaagggagaaacttaaggcggccttgggtgaggaaacatttgttaggttgggtgtttatgatatgggagagatagtggcagagaaatggagtgaagaggaagaggaattatttcatgaagttgtattttccaatcctgcagcattaggcaagaatttctgggaccaccttgctgttgaatttccttcacggagcaagagagatcttgttagctattacttcaatgtctttattttgcggaagcgtgccaagcagaataggttgacccatcaaatatagacagtgataacgatgaatggcaggagattgatgatgatgttgttgctacgggagctcaaatgacagatgacgacgaggattctgtggttgaatcaccaatatatcaaaattatcctggtcacaatgagatatatgtgactgaaaaacaagcatatgatgaagaagctggtgttgcaaccttggaagattatcagacgataaatttttgcaggaggaaggtcttgagtgatgtgtcaaaagcatgtcctgatgaattgattgataataacagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96067" stop="97284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96367" g_stop="96984" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E207993" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96367" e_stop="96984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAG</genome_strand>
        <mrna_strand>AAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGG-TTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378854" ref_strand="+" ref_description="SGN-E378854 [TUS-3-O5]">
      <seq>attgggtgctcctgtggagatgctggttcctttggatgtgttcggttgcacatcatggaagcaagggagaaacttaaggcggccttgggtgaggaaacatttgttaggttgggtgtttatgatatgggagagatagtggcagagaaatggagtgaagaggaagaggaattatttcatgaagttgtattttccaatcctgcagcattaggcaagaatttctgggaccaccttgctgttgaatttccttcacggagcaagagagatcttgttagctattacttcaatgtctttattttgcggaagcgtgccaagcagaataggttgacccatcaaatatagacagtgataacgatgaatggcaggagattgatgatgatgttgttgctacgggagctcaaatgacagatgacgacgaggattctgtggttgaatcaccaatatatcaaaattatcctggtcacaatgagatatatgtgactgaaaaacaagcatatgatgaagaagctggtgttgcaaccttggaagattatcagacgataaatttttgcaggaggaaggtcttgagtgatgtgtcaaaagcatgtcctgatgaattgattgataataacagtagttgtggtcacaatattcagcctctagacagacatcattcaaatgaagtgggtaaccatgatgttgaagaatactcttgtaccactgatgcagctggggcttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96071" stop="97389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96371" g_stop="97089" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E378854" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96371" e_stop="97089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTC</genome_strand>
        <mrna_strand>ATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGG-TTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGAATACTCTTGTACCACTGATGCAGCTGGGGCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539217" ref_strand="+" ref_description="SGN-E539217 [TUS-58-N21](-)">
      <seq>cagacgataaatttttgcaggaggaaggtcttgagtgatgtgtcaaaagcatgtcctgatgaattgattgataataacagtagttgtggtcacaatattcagcctctagacagacatcattcaaatgaagtgggtaaccatgatgtagaagataactcttgtaccactgatgcagctggggcttcttcagatacaccacaggtaaaaactggatgattgtaaacactgggcaagtcattttgctggtgttggcattgacagtgggcatgattttgtgatggagccatctaatggtaaagaatgggatatgggagggtacttgagctgtcctaagaatgaagttgatttgttaccaacttgctctatgattgaggaagtgtttggagaagaagcctggagttccaagcacagagatggtcacagtttaagcaagcattgacctgttgcatatgatacccgtttattttttgccgttggatcatccttggaacacttcttgcaaaagtgagatccatttttacttgtatattatttagtggtgaaaggacagagcatgttagggataaaagttgagattttcgaccttgctcttggttgttagtaggaagctgttttgaggtaggcggttaggattaatttatatgtaaattatatggccgagttgagccatctttcgacaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96602" stop="97893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96902" g_stop="97593" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E539217" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96902" e_stop="97593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTCAGATACACCACAGGTAAAAACT-GATGATTGTAAACACTGGGCAAGTCATTTTGCTGGTGTTGGCATTGACAGTGGGCATGATTTTGTGATGGAGCCATCTAATGGTAAAGAATGGGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</genome_strand>
        <mrna_strand>CAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTAGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTCAGATACACCACAGGTAAAAACTGGATGATTGTAAACACTGGGCAAGTCATTTTGCTGGTGTTGGCATTGACAGTGGGCATGATTTTGTGATGGAGCCATCTAATGGTAAAGAATGGGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGAAGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347757" ref_strand="+" ref_description="SGN-E347757 [cTOF-26-M12]">
      <seq>ggatatgggagggtacttgagctgtcctaagaatgaagttgatttgttaccaacttgctctatgattgaggaagtgtttggagacgaagcctggagttccaagcacagagatggtcacagtttaagcaagcattgacctgttgcatatgatacccgtttattttttgccgttggatcatccttggaacacttcttgcaaaagtgagatccatttttacttgtatattatttagtggtgaaaggacagagcatgttagggataaaagttgagattttcgaccttgctcttggttgttagtaggaagctgttttgaggtaggcggttaggattaatttatatgtaaattatatggccgagttgagccatctttcgacaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96904" stop="97893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97204" g_stop="97593" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E347757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97204" e_stop="97593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</genome_strand>
        <mrna_strand>GGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572801" ref_strand="+" ref_description="SGN-E572801 [32011]">
      <seq>tatcccctataggctatatctatacccacttcacatttagtttcgtagatttttcctacaattcatcttcttcggattttcagataatttcttaatctaggaggtccatccctgtgggattactttctatctataaaaaaaaatgcatggtcttaagaagtctcctttacattggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacgatgagtcggacaagaagcaaactgtaaaaccatccaggagaatatcatcggagccttctgcagctaccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaactttgacggcaagaaataaatacaagaacgatttccgggagtctggaggatttgagaaccaaactgtagacgagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgaccatgatcttagccggggtgaaaaactcttggggagtcttggaggcatattttctaagacttggaagccaaagacaagtcgcccaattacagggccccgttatcacaagaatgtcagatgatccagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112113" stop="115073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112400" g_stop="112483" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112484" i_stop="113695" i_length="1212">
            <donor d_prob="0.724" d_score="0.92"/>
            <acceptor a_prob="0.785" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113696" g_stop="114244" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="634" r_length="551" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114538" g_stop="114631" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="729" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114632" i_stop="114755" i_length="124">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114756" g_stop="114773" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="747" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E572801" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112400" e_stop="112483"/>
          <exon e_start="113696" e_stop="114244"/>
          <exon e_start="114538" e_stop="114631"/>
          <exon e_start="114756" e_stop="114773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAATATCCCCAATATCTGTACCCACTTCACATTATAGTTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAGGTACTGCGTATCATCATTTTGATCTATTCTGTTTTTCAGTTATGGAGATTCTGTTTTCTTTCCTGTTTGCTGTACATTGTGGGGTTTTGTACAAGTTCTGAATTTCAATTTTATGAATTTATGAAGGAAAAAATGGATCTTTTTGTTCATATAGGTCGTTTCAAACTTCATTCAGTGATTTGTTTTTGTTCTTCTATTTTTTGTGTATTTTTATGTGAGAAATTATGATTTGGAGCTATCTTATCTACTCTGTAGGAAAACCTTGTTTTCTCGCTATATTCGTGTTTTTTTTTACTATATGATTTGTGGGAATTTGAGAATCAGGATGATAGCGTTAGGAATATCAATCGGGAATATTCTTAAATTTCTGCTTAGTTAAAGGATGATTGTTGGAATTTGCTTCGATAGAAGAAACTTGAAATTCTGGGTTTTGTTAGGACGGAGATGTAAATAGAACTGGACTTGTATATCCCCTAAATTTTCGATATTATTCTTGCTCCTTGTTGGATTTTCTTGATTTTTTCAAGGATTTACTTAGTTTGACTTTGGTAACTAAATTTCTCAACTACCACCAAGCTATCCTCGCTTGCCTGTGTTATGTAAATGAAACCGGTTCAAATAGAGAGATGCTCTTGGGTTTCCTCTTTCATTATCATAGCTAAATTTGAGTAGGATGAATCAACCTGAGGAAAAGTAGGTAAGGTTAGACCCCTCGACTTGATTGAAGTTGACTTCGCTGAGTTCTGAATAAATCAAAAAGTTTATTGATTTGATTCGCCCCATTTCATTTATTTGGGTGAGAGGGAGGCTGTGAGTCACCTGGGCTATGGATCTTTCCGTTGGTTGATTCTCGAGATCACCTCTTCAAAGAAAAAAAAAAGAGGGCCCATGGTTCTGGCCCTGCAAATGAATAGGAAGCACTTGGTACTGAGATGCAGTTGTTTGTTGTTCGTGTTTTTGTTGTAGTATTATATTAGTATTGCATACTTGATTTTAGACTTCTCTTATTAGTGCTACATCTCTGAACAAAGCTTGGTTTGAGTCTTTATTGCTATCTTTTGCGTGTTGTGTGCTCCTAATCTCTTATCTTCTAGCCAATGTTCCTTTGTGATCTGTTACTGAATTGTCTCCTTGTACGTGTCTCACAGTAGCAAACTATCAGTTCTCTGTATGATGAACTTCGCTTAATAGTTTGATAGTCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTAT--CAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGG-CCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTC</genome_strand>
        <mrna_strand>TATCCCCTATAGGCTATATCTATACCCACTTCACATT-TAGTTTCGTAGATTTTTCCTACAATTCATCTTCTTCGGATTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTCTTAATCTAGGAGGTCCATCCCTGTGGGATTACTTTCTATCTATAAAAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATTGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACGATGAGTCGGACAAGAAGCAAACTGTAAAACCATCCAGGAGAATATCATCGGAGCCTTCTGCAGCTACCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTTGACGGCAAGAAATAAATACAAGAACGATTTCCGGGAGTCTGGAGGATTTGAGAACCAAACTGTAGACGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGACCATGATCTTAGCCGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCTAAGACTTGGAAGCCAAAGACAAGTCGCCCAATTACAGGGCCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413580" ref_strand="+" ref_description="SGN-E413580 [STM-18-I17]">
      <seq>cttaacatcccctgctccacgcttcttctttaccatttacaaatatcccctataggcaatatctatacccacttcacattatagtttcttagattttttctacaattcatcttcttcggattttcagataatttcttaatctaggaggtccatccctgtgggattactttctatctataaaaaaaatgcatggtcttaagaagtctcctttacattggagtgctagaaaaaaatctgtggatcctgtggcccatagtaattctggatcaaatccctttgattctgacgatgagtcagacaagaagcaaactgtaaaaccatctaggagaatatcatcggagccttctgcagctaccccaaatttgagtacaaacccttttgatgatgatgagattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaacgatttccgggagtctggaggatttgagaaccaaactgtagacgagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacanaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgaccatgatcttagcccggggtgaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112069" stop="114550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112413" g_stop="112483" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="127" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112484" i_stop="113695" i_length="1212">
            <donor d_prob="0.724" d_score="0.98"/>
            <acceptor a_prob="0.785" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113696" g_stop="114244" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="678" r_length="551" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114538" g_stop="114549" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="690" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E413580" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112413" e_stop="112483"/>
          <exon e_start="113696" e_stop="114244"/>
          <exon e_start="114538" e_stop="114549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCTGTACCCACTTCACATTATAGTTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAGGTACTGCGTATCATCATTTTGATCTATTCTGTTTTTCAGTTATGGAGATTCTGTTTTCTTTCCTGTTTGCTGTACATTGTGGGGTTTTGTACAAGTTCTGAATTTCAATTTTATGAATTTATGAAGGAAAAAATGGATCTTTTTGTTCATATAGGTCGTTTCAAACTTCATTCAGTGATTTGTTTTTGTTCTTCTATTTTTTGTGTATTTTTATGTGAGAAATTATGATTTGGAGCTATCTTATCTACTCTGTAGGAAAACCTTGTTTTCTCGCTATATTCGTGTTTTTTTTTACTATATGATTTGTGGGAATTTGAGAATCAGGATGATAGCGTTAGGAATATCAATCGGGAATATTCTTAAATTTCTGCTTAGTTAAAGGATGATTGTTGGAATTTGCTTCGATAGAAGAAACTTGAAATTCTGGGTTTTGTTAGGACGGAGATGTAAATAGAACTGGACTTGTATATCCCCTAAATTTTCGATATTATTCTTGCTCCTTGTTGGATTTTCTTGATTTTTTCAAGGATTTACTTAGTTTGACTTTGGTAACTAAATTTCTCAACTACCACCAAGCTATCCTCGCTTGCCTGTGTTATGTAAATGAAACCGGTTCAAATAGAGAGATGCTCTTGGGTTTCCTCTTTCATTATCATAGCTAAATTTGAGTAGGATGAATCAACCTGAGGAAAAGTAGGTAAGGTTAGACCCCTCGACTTGATTGAAGTTGACTTCGCTGAGTTCTGAATAAATCAAAAAGTTTATTGATTTGATTCGCCCCATTTCATTTATTTGGGTGAGAGGGAGGCTGTGAGTCACCTGGGCTATGGATCTTTCCGTTGGTTGATTCTCGAGATCACCTCTTCAAAGAAAAAAAAAAGAGGGCCCATGGTTCTGGCCCTGCAAATGAATAGGAAGCACTTGGTACTGAGATGCAGTTGTTTGTTGTTCGTGTTTTTGTTGTAGTATTATATTAGTATTGCATACTTGATTTTAGACTTCTCTTATTAGTGCTACATCTCTGAACAAAGCTTGGTTTGAGTCTTTATTGCTATCTTTTGCGTGTTGTGTGCTCCTAATCTCTTATCTTCTAGCCAATGTTCCTTTGTGATCTGTTACTGAATTGTCTCCTTGTACGTGTCTCACAGTAGCAAACTATCAGTTCTCTGTATGATGAACTTCGCTTAATAGTTTGATAGTCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTAT-CAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAG-CAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTC</genome_strand>
        <mrna_strand>CAATATCTATACCCACTTCACATTATAGTTTCTTAGATTTTTTCTACAATTCATCTTCTTCGGATTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTCTTAATCTAGGAGGTCCATCCCTGTGGGATTACTTTCTATCTATAAAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATTGGAGTGCTAGAAAAAAATCTGTGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACGATGAGTCAGACAAGAAGCAAACTGTAAAACCATCTAGGAGAATATCATCGGAGCCTTCTGCAGCTACCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAGATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAACGATTTCCGGGAGTCTGGAGGATTTGAGAACCAAACTGTAGACGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACANAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGACCATGATCTTAGCCCGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339779" ref_strand="+" ref_description="SGN-E339779 [cTOE-16-F6]">
      <seq>tttcttagattttttctacaatttatcttcttcggattttcagataatttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112141" stop="114480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112441" g_stop="112483" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112484" i_stop="113695" i_length="1212">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113696" g_stop="114180" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="528" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E339779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112441" e_stop="112483"/>
          <exon e_start="113696" e_stop="114180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAGGTACTGCGTATCATCATTTTGATCTATTCTGTTTTTCAGTTATGGAGATTCTGTTTTCTTTCCTGTTTGCTGTACATTGTGGGGTTTTGTACAAGTTCTGAATTTCAATTTTATGAATTTATGAAGGAAAAAATGGATCTTTTTGTTCATATAGGTCGTTTCAAACTTCATTCAGTGATTTGTTTTTGTTCTTCTATTTTTTGTGTATTTTTATGTGAGAAATTATGATTTGGAGCTATCTTATCTACTCTGTAGGAAAACCTTGTTTTCTCGCTATATTCGTGTTTTTTTTTACTATATGATTTGTGGGAATTTGAGAATCAGGATGATAGCGTTAGGAATATCAATCGGGAATATTCTTAAATTTCTGCTTAGTTAAAGGATGATTGTTGGAATTTGCTTCGATAGAAGAAACTTGAAATTCTGGGTTTTGTTAGGACGGAGATGTAAATAGAACTGGACTTGTATATCCCCTAAATTTTCGATATTATTCTTGCTCCTTGTTGGATTTTCTTGATTTTTTCAAGGATTTACTTAGTTTGACTTTGGTAACTAAATTTCTCAACTACCACCAAGCTATCCTCGCTTGCCTGTGTTATGTAAATGAAACCGGTTCAAATAGAGAGATGCTCTTGGGTTTCCTCTTTCATTATCATAGCTAAATTTGAGTAGGATGAATCAACCTGAGGAAAAGTAGGTAAGGTTAGACCCCTCGACTTGATTGAAGTTGACTTCGCTGAGTTCTGAATAAATCAAAAAGTTTATTGATTTGATTCGCCCCATTTCATTTATTTGGGTGAGAGGGAGGCTGTGAGTCACCTGGGCTATGGATCTTTCCGTTGGTTGATTCTCGAGATCACCTCTTCAAAGAAAAAAAAAAGAGGGCCCATGGTTCTGGCCCTGCAAATGAATAGGAAGCACTTGGTACTGAGATGCAGTTGTTTGTTGTTCGTGTTTTTGTTGTAGTATTATATTAGTATTGCATACTTGATTTTAGACTTCTCTTATTAGTGCTACATCTCTGAACAAAGCTTGGTTTGAGTCTTTATTGCTATCTTTTGCGTGTTGTGTGCTCCTAATCTCTTATCTTCTAGCCAATGTTCCTTTGTGATCTGTTACTGAATTGTCTCCTTGTACGTGTCTCACAGTAGCAAACTATCAGTTCTCTGTATGATGAACTTCGCTTAATAGTTTGATAGTCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCA</genome_strand>
        <mrna_strand>TTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327728" ref_strand="+" ref_description="SGN-E327728 [cTOC-20-E6]">
      <seq>ttttttctacaatttatcttcttcggattttcagataatttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112150" stop="114540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112450" g_stop="112483" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112484" i_stop="113695" i_length="1212">
            <donor d_prob="0.724" d_score="0.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113696" g_stop="114239" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="578" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E327728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112450" e_stop="112483"/>
          <exon e_start="113696" e_stop="114239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTACAATTTATCTTCTTCGGATTTTCAGGTACTGCGTATCATCATTTTGATCTATTCTGTTTTTCAGTTATGGAGATTCTGTTTTCTTTCCTGTTTGCTGTACATTGTGGGGTTTTGTACAAGTTCTGAATTTCAATTTTATGAATTTATGAAGGAAAAAATGGATCTTTTTGTTCATATAGGTCGTTTCAAACTTCATTCAGTGATTTGTTTTTGTTCTTCTATTTTTTGTGTATTTTTATGTGAGAAATTATGATTTGGAGCTATCTTATCTACTCTGTAGGAAAACCTTGTTTTCTCGCTATATTCGTGTTTTTTTTTACTATATGATTTGTGGGAATTTGAGAATCAGGATGATAGCGTTAGGAATATCAATCGGGAATATTCTTAAATTTCTGCTTAGTTAAAGGATGATTGTTGGAATTTGCTTCGATAGAAGAAACTTGAAATTCTGGGTTTTGTTAGGACGGAGATGTAAATAGAACTGGACTTGTATATCCCCTAAATTTTCGATATTATTCTTGCTCCTTGTTGGATTTTCTTGATTTTTTCAAGGATTTACTTAGTTTGACTTTGGTAACTAAATTTCTCAACTACCACCAAGCTATCCTCGCTTGCCTGTGTTATGTAAATGAAACCGGTTCAAATAGAGAGATGCTCTTGGGTTTCCTCTTTCATTATCATAGCTAAATTTGAGTAGGATGAATCAACCTGAGGAAAAGTAGGTAAGGTTAGACCCCTCGACTTGATTGAAGTTGACTTCGCTGAGTTCTGAATAAATCAAAAAGTTTATTGATTTGATTCGCCCCATTTCATTTATTTGGGTGAGAGGGAGGCTGTGAGTCACCTGGGCTATGGATCTTTCCGTTGGTTGATTCTCGAGATCACCTCTTCAAAGAAAAAAAAAAGAGGGCCCATGGTTCTGGCCCTGCAAATGAATAGGAAGCACTTGGTACTGAGATGCAGTTGTTTGTTGTTCGTGTTTTTGTTGTAGTATTATATTAGTATTGCATACTTGATTTTAGACTTCTCTTATTAGTGCTACATCTCTGAACAAAGCTTGGTTTGAGTCTTTATTGCTATCTTTTGCGTGTTGTGTGCTCCTAATCTCTTATCTTCTAGCCAATGTTCCTTTGTGATCTGTTACTGAATTGTCTCCTTGTACGTGTCTCACAGTAGCAAACTATCAGTTCTCTGTATGATGAACTTCGCTTAATAGTTTGATAGTCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTA</genome_strand>
        <mrna_strand>TTTTTTCTACAATTTATCTTCTTCGGATTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281931" ref_strand="+" ref_description="SGN-E281931 [cLES-2-H8]">
      <seq>tcggattttcagataatttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113387" stop="114408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113696" g_stop="114108" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="425" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E281931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113696" e_stop="114108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATC</genome_strand>
        <mrna_strand>ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709748" ref_strand="+" ref_description="SGN-E709748 [FA53AA08]">
      <seq>cgttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaacccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagcccaagcagatgatggactgtcagaactcagcgatctgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113401" stop="116000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113699" g_stop="114244" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114538" g_stop="114631" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="640" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114632" i_stop="114755" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114756" g_stop="114892" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="778" r_length="138" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114893" i_stop="115647" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115648" g_stop="115700" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="831" r_length="53" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E709748" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113699" e_stop="114244"/>
          <exon e_start="114538" e_stop="114631"/>
          <exon e_start="114756" e_stop="114892"/>
          <exon e_start="115648" e_stop="115700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAA-CCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGG</genome_strand>
        <mrna_strand>CGTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCCAAGCAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261141" ref_strand="+" ref_description="SGN-E261141 [cLEG-65-N7]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagaaggagaaattacgattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaagctgagaaagccaagcaagatgatggactgtcagaactcagcgatctgttgggggagctcaagaatatggctgttgacatgggatctngaattgagaggcataaagatgcattggatcatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113604" stop="116025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113904" g_stop="114244" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114538" g_stop="114631" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114632" i_stop="114755" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114756" g_stop="114892" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="572" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114893" i_stop="115647" i_length="755">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115648" g_stop="115745" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="670" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115746" i_stop="116005" i_length="260">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116006" g_stop="116025" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="690" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E261141" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113904" e_stop="114244"/>
          <exon e_start="114538" e_stop="114631"/>
          <exon e_start="114756" e_stop="114892"/>
          <exon e_start="115648" e_stop="115745"/>
          <exon e_start="116006" e_stop="116025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAGGTTAGTGTTATAAAATTTATTAAGCAGATTCCAATCTCTCCTTTCTTGTTCTCTCCCTCTTCCACCATCTCCTTATTGAACTGTCACTGTTAAAGTACTGTGCTACTAAGTCGCTTCTTAAAAAATATGTATATGTAACAACTATGCCTCAATCCCAAGCAAGTTGATTTCGACTGTATGAATTCTCACTGTTCATGTCCCTTCATTTAAACCATTCTTGAGCACAATAAGAATTCTGTATACGCTGTTGGATATTACAGGCATAAAGATGCATTGGATC</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAAGGAGAAATTACGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTNGAATTGAGAG....................................................................................................................................................................................................................................................................GCATAAAGATGCATTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264065" ref_strand="+" ref_description="SGN-E264065 [cLEG-64-G11]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggactgtcagaactcagcgatctgttgggggagctcaagaatatggctgttgacatgggatctgaaattgagaggcataaagatgcattggatcatactgaacaggatgttgatgagcttggcaccagagttcaaggggccaaccggaggattcngcgcttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113604" stop="116025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113904" g_stop="114244" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114538" g_stop="114631" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114632" i_stop="114755" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114756" g_stop="114892" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="572" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114893" i_stop="115647" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115648" g_stop="115745" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="670" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115746" i_stop="116005" i_length="260">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116006" g_stop="116025" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="690" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E264065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113904" e_stop="114244"/>
          <exon e_start="114538" e_stop="114631"/>
          <exon e_start="114756" e_stop="114892"/>
          <exon e_start="115648" e_stop="115745"/>
          <exon e_start="116006" e_stop="116025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAGGTTAGTGTTATAAAATTTATTAAGCAGATTCCAATCTCTCCTTTCTTGTTCTCTCCCTCTTCCACCATCTCCTTATTGAACTGTCACTGTTAAAGTACTGTGCTACTAAGTCGCTTCTTAAAAAATATGTATATGTAACAACTATGCCTCAATCCCAAGCAAGTTGATTTCGACTGTATGAATTCTCACTGTTCATGTCCCTTCATTTAAACCATTCTTGAGCACAATAAGAATTCTGTATACGCTGTTGGATATTACAGGCATAAAGATGCATTGGATC</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG....................................................................................................................................................................................................................................................................GCATAAAGATGCATTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369845" ref_strand="+" ref_description="SGN-E369845 [TUS-25-O13]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113604" stop="115975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113904" g_stop="114244" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114538" g_stop="114631" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114632" i_stop="114755" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114756" g_stop="114892" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="572" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114893" i_stop="115647" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115648" g_stop="115675" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="600" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E369845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113904" e_stop="114244"/>
          <exon e_start="114538" e_stop="114631"/>
          <exon e_start="114756" e_stop="114892"/>
          <exon e_start="115648" e_stop="115675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGAC</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255371" ref_strand="+" ref_description="SGN-E255371 [cLEG-30-F21]">
      <seq>cggagccttctgcagctgccccatatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattangattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113604" stop="115175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113904" g_stop="114244" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114538" g_stop="114631" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114632" i_stop="114755" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114756" g_stop="114875" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="555" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E255371" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113904" e_stop="114244"/>
          <exon e_start="114538" e_stop="114631"/>
          <exon e_start="114756" e_stop="114875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATG</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCATATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTANGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254733" ref_strand="+" ref_description="SGN-E254733 [cLEG-29-P24]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcgagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaagattgaactctgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113604" stop="115128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113904" g_stop="114244" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114538" g_stop="114631" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114632" i_stop="114755" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114756" g_stop="114828" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="508" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E254733" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113904" e_stop="114244"/>
          <exon e_start="114538" e_stop="114631"/>
          <exon e_start="114756" e_stop="114828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACC</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCGAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAAGATTGAACTCTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258981" ref_strand="+" ref_description="SGN-E258981 [cLEG-41-H18]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113604" stop="114879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113904" g_stop="114244" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114538" g_stop="114579" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="383" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E258981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113904" e_stop="114244"/>
          <exon e_start="114538" e_stop="114579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAG</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254599" ref_strand="+" ref_description="SGN-E254599 [cLEG-29-P12]">
      <seq>cggagccttctgcaactgccccaaatttgagtacaaacccttttgatgatgatgaggttaaagagactccttcacatgcttactcaacttcgacggcgagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtggaggagttggaaaactatgccggctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattgcaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113604" stop="114873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113904" g_stop="114244" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114538" g_stop="114573" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="377" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E254599" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113904" e_stop="114244"/>
          <exon e_start="114538" e_stop="114573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTT</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAACTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAGGTTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCGAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTGGAGGAGTTGGAAAACTATGCCGGCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTGCAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316668" ref_strand="+" ref_description="SGN-E316668 [cTOB-7-H3]">
      <seq>agttggaaaactattccgtctacaggtcagaagagactacaggatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttctaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaagggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggactgtcagaactcagcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0062L07-MA9aD/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0062L07.1" temp_strand="+" temp_description="C06SLm0062L07.1  AC219223.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0062L07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113763" stop="115992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114063" g_stop="114244" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114538" g_stop="114631" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="276" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114632" i_stop="114755" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114756" g_stop="114892" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="413" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114893" i_stop="115647" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115648" g_stop="115692" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="458" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0062L07.1" gen_strand="+" ref_id="SGN-E316668" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0062L07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114063" e_stop="114244"/>
          <exon e_start="114538" e_stop="114631"/>
          <exon e_start="114756" e_stop="114892"/>
          <exon e_start="115648" e_stop="115692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGAT</genome_strand>
        <mrna_strand>AGTTGGAAAACTATTCCGTCTACAGGTCAGAAGAGACTACAGGATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCTAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAAGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>156</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5403" PGL_stop="10902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5403" e_stop="5525"/>
            <exon e_start="7720" e_stop="7898"/>
            <exon e_start="8161" e_stop="8344"/>
            <exon e_start="8535" e_stop="8609"/>
            <exon e_start="8828" e_stop="8937"/>
            <exon e_start="9071" e_stop="9289"/>
            <exon e_start="9729" e_stop="9884"/>
            <exon e_start="10472" e_stop="10902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.895" e_score="0.894"/>
          <exon-intron don_prob="0.999" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="5403" e_stop="5525" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.895">
            <gDNA_intron_boundary i_start="5526" i_stop="7719" i_length="2194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7720" e_stop="7898" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.937">
            <gDNA_intron_boundary i_start="7899" i_stop="8160" i_length="262"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8161" e_stop="8344" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.822" acc_prob="0.992">
            <gDNA_intron_boundary i_start="8345" i_stop="8534" i_length="190"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8535" e_stop="8609" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.768">
            <gDNA_intron_boundary i_start="8610" i_stop="8827" i_length="218"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8828" e_stop="8937" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9071" e_stop="9289" e_length="219"/>
          </exon>
          <intron i_serial="6" don_prob="0.905" acc_prob="0.863">
            <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9729" e_stop="9884" e_length="156"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587"/>
          </intron>
          <exon e_serial="8" e_score="0.985">
            <gDNA_exon_boundary e_start="10472" e_stop="10902" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5403" stop="5525"/>
              <exon start="7720" stop="7809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5485" stop="5525"/>
              <exon start="7720" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5487" stop="5525"/>
              <exon start="7720" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5491" stop="5525"/>
              <exon start="7720" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
              <exon start="9071" stop="9207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5493" stop="5525"/>
              <exon start="7720" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5498" stop="5525"/>
              <exon start="7720" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
              <exon start="9071" stop="9080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5498" stop="5525"/>
              <exon start="7720" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7720" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
              <exon start="9071" stop="9258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7720" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
              <exon start="9071" stop="9210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7773" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
              <exon start="9071" stop="9231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7773" stop="7898"/>
              <exon start="8161" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8172" stop="8344"/>
              <exon start="8535" stop="8562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8183" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
              <exon start="9071" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8183" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
              <exon start="9071" stop="9289"/>
              <exon start="9729" stop="9884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8239" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
              <exon start="9071" stop="9289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8332" stop="8344"/>
              <exon start="8535" stop="8609"/>
              <exon start="8828" stop="8937"/>
              <exon start="9071" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9128" stop="9289"/>
              <exon start="9729" stop="9774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9129" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9171" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9208" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9229" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10648" stop="10902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCACGGCAACGAATCAGCGATATGATCAATTATATAATTCATTACTGGCAATAAATTTTCTGCAAAAAACAGAAAAAAGAGGAGTGAGGAAGAAGGAGACAGTCACCATGGATTCCCCAA : GTGTTATCCCTTATATCTTTTTGCTACTTCTTGTTGGATGCTCGGCCAGACCTCTCTACCCACTTCCTGGCAGAAGAAATGATAGGAATAAACAGCCTTTACAAACATTTCGAGCTTACAACATTGCACACCGAGGTTCAAATGGAGAAATTCCTGAAGAAACTGCAGCAGCATACATG : AGAGCTATTGAAGAGGGTACTGATTTCATCGAAACAGATATTTTAGCATCTAAAGACGGCGCTCTTATATGTTTCCATGATGTCATACTTGATGATACAACTGATATAGCAAATCACAAGGAATTTGCTGATCGAAAGAGGACCTATGATGTTCAAGGGGTTAACACTACTGGATATTTTCTGG : TTGACTTCACCCTTGAAGAATTGAAGCTTCTGCGTGTTAAGCAGAGATATCCTTTCAGAGATCAGCAATATAATG : GAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACAC : GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG : TCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAG : GTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTGCCAAAAGAAAAAACAGGTTTCAATATATTGTAATTGGTGCAAATGACACTCTTGAAGCATTTGGACCCTCTTAACCCTATCTCTTAGATTATGGATTTATACAAGAG</gDNA_template>
            <first_frame> N  P  R  Q  R  I  S  D  M  I  N  Y  I  I  H  Y  W  Q  *  I  F  C  K  K  Q  K  K  E  E  *  G  R  R  R  Q  S  P  W  I  P  Q  :  V  L  S  L  I  S  F  C  Y  F  L  L  D  A  R  P  D  L  S  T  H  F  L  A  E  E  M  I  G  I  N  S  L  Y  K  H  F  E  L  T  T  L  H  T  E  V  Q  M  E  K  F  L  K  K  L  Q  Q  H  T  * :   E  L  L  K  R  V  L  I  S  S  K  Q  I  F  *  H  L  K  T  A  L  L  Y  V  S  M  M  S  Y  L  M  I  Q  L  I  *  Q  I  T  R  N  L  L  I  E  R  G  P  M  M  F  K  G  L  T  L  L  D  I  F  W  :  L  T  S  P  L  K  N  *  S  F  C  V  L  S  R  D  I  L  S  E  I  S  N  I  M  :  E  N  F  L  S  L  L  L  R  S  S  S  Q  L  H  W  M  P  I  E  L  L  E  Y  I  Q  R  *  K  I  Q  S  L  S  T  N  T :   S  N  G  Q  V  V  R  N  L  R  T  S  L  L  R  H  *  R  S  M  D  T  K  V  H  I  C  R  S  N  G  *  S  S  L  H  S  F  N  L  L  R  R  R  H  *  F  I  Y  Q  T  K  R  T  C  L  R  S  S  S  L  M  T  Q  I  H  Q  L  K  T  P  I  S :   H  I  G  R  L  L  Q  M  V  I  L  I  I  S  R  I  M  W  W  G  L  V  P  G  R  T  P  *  F  L  V  P  T  I  I  C  K  H  L  L  I  S  S  Q  E  H  M  P  V  I  Y  R :   C  I  H  T  L  S  G  M  R  T  N  S  Y  T  S  T  S  V  K  I  H  T  T  S  M  T  T  G  *  T  R  W  E  L  M  A  S  S  Q  T  S  Q  A  A  F  T  T  I  R  N  G  P  I  H  L  H  L  E  K  K  K  Q  L  G  F  *  I  R  L  N  *  C  F  P  S  S  S  T  P  E  L  N  S  I  Q  H  C  L  W  Q  G  N  A  I  Y  W  S  V  Y  I  I  G  F  P  I  Y  I  C  Q  K  K  K  Q  V  S  I  Y  C  N  W  C  K  *  H  S  *  S  I  W  T  L  L  T  L  S  L  R  L  W  I  Y  T  R  </first_frame>
            <second_frame>  I  H  G  N  E  S  A  I  *  S  I  I  *  F  I  T  G  N  K  F  S  A  K  N  R  K  K  R  S  E  E  E  G  D  S  H  H  G  F  P  K :   C  Y  P  L  Y  L  F  A  T  S  C  W  M  L  G  Q  T  S  L  P  T  S  W  Q  K  K  *  *  E  *  T  A  F  T  N  I  S  S  L  Q  H  C  T  P  R  F  K  W  R  N  S  *  R  N  C  S  S  I  H   : E  S  Y  *  R  G  Y  *  F  H  R  N  R  Y  F  S  I  *  R  R  R  S  Y  M  F  P  *  C  H  T  *  *  Y  N  *  Y  S  K  S  Q  G  I  C  *  S  K  E  D  L  *  C  S  R  G  *  H  Y  W  I  F  S  G :   *  L  H  P  *  R  I  E  A  S  A  C  *  A  E  I  S  F  Q  R  S  A  I  *  W :   R  I  F  Y  H  Y  F  *  G  V  H  L  N  C  I  G  C  P  *  S  C  W  N  I  S  R  D  K  K  S  S  P  Y  Q  P  T   : R  Q  M  A  R  W  *  E  I  *  G  Q  V  C  *  D  T  E  E  V  W  I  Q  R  F  I  Y  V  E  A  M  V  K  A  A  C  I  H  S  I  F  C  A  D  V  T  N  L  Y  I  K  P  N  G  P  A  *  D  L  P  H  *  *  H  K  Y  T  N  S  R  H  Q  S   : V  I  L  G  D  Y  C  R  W  L  S  *  L  Y  Q  G  L  C  G  G  D  W  S  L  E  G  H  H  S  S  L  F  Q  Q  L  S  A  N  T  F  *  S  H  R  K  S  T  C  P  *  S  T   : G  A  S  I  H  F  P  E  *  E  P  I  R  T  L  Q  L  Q  *  R  S  I  Q  R  V  *  L  L  D  K  Q  D  G  S  *  W  P  L  H  R  L  H  R  Q  P  S  P  L  S  G  M  D  Q  S  I  C  I  W  R  K  R  S  N  *  A  S  E  *  D  *  I  D  A  F  Q  V  Q  V  H  L  S  *  I  L  F  N  I  V  C  G  K  A  M  L  F  I  G  L  Y  I  S  L  A  F  Q  F  I  F  A  K  R  K  N  R  F  Q  Y  I  V  I  G  A  N  D  T  L  E  A  F  G  P  S  *  P  Y  L  L  D  Y  G  F  I  Q  E </second_frame>
            <third_frame>   S  T  A  T  N  Q  R  Y  D  Q  L  Y  N  S  L  L  A  I  N  F  L  Q  K  T  E  K  R  G  V  R  K  K  E  T  V  T  M  D  S  P   : S  V  I  P  Y  I  F  L  L  L  L  V  G  C  S  A  R  P  L  Y  P  L  P  G  R  R  N  D  R  N  K  Q  P  L  Q  T  F  R  A  Y  N  I  A  H  R  G  S  N  G  E  I  P  E  E  T  A  A  A  Y  M  :  R  A  I  E  E  G  T  D  F  I  E  T  D  I  L  A  S  K  D  G  A  L  I  C  F  H  D  V  I  L  D  D  T  T  D  I  A  N  H  K  E  F  A  D  R  K  R  T  Y  D  V  Q  G  V  N  T  T  G  Y  F  L   : V  D  F  T  L  E  E  L  K  L  L  R  V  K  Q  R  Y  P  F  R  D  Q  Q  Y  N   : G  E  F  S  I  I  T  F  E  E  F  I  S  I  A  L  D  A  H  R  V  V  G  I  Y  P  E  I  K  N  P  V  L  I  N  Q  H  :  V  K  W  P  G  G  K  K  F  E  D  K  F  V  E  T  L  K  K  Y  G  Y  K  G  S  Y  M  S  K  Q  W  L  K  Q  P  A  F  I  Q  S  F  A  P  T  S  L  I  Y  I  S  N  Q  T  D  L  P  K  I  F  L  I  D  D  T  N  T  P  T  Q  D  T  N  Q  :  S  Y  W  E  I  T  A  D  G  Y  L  D  Y  I  K  D  Y  V  V  G  I  G  P  W  K  D  T  I  V  P  C  S  N  N  Y  L  Q  T  P  S  D  L  I  A  R  A  H  A  R  N  L  Q  :  V  H  P  Y  T  F  R  N  E  N  Q  F  V  H  F  N  F  S  E  D  P  Y  N  E  Y  D  Y  W  I  N  K  M  G  V  D  G  L  F  T  D  F  T  G  S  L  H  H  Y  Q  E  W  T  N  P  F  A  S  G  E  K  E  A  T  R  L  L  N  K  I  E  L  M  L  S  K  F  K  Y  T  *  V  K  F  Y  S  T  L  S  V  A  R  Q  C  Y  L  L  V  C  I  Y  H  W  L  S  N  L  Y  L  P  K  E  K  T  G  F  N  I  L  *  L  V  Q  M  T  L  L  K  H  L  D  P  L  N  P  I  S  *  I  M  D  L  Y  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5405" stop="5525"/>
                    <exon start="7720" stop="7898"/>
                    <exon start="8161" stop="8344"/>
                    <exon start="8535" stop="8609"/>
                    <exon start="8828" stop="8937"/>
                    <exon start="9071" stop="9289"/>
                    <exon start="9729" stop="9884"/>
                    <exon start="10472" stop="10711"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STATNQRYDQLYNSLLAINFLQKTEKRGVRKKETVTMDSPSVIPYIFLLLLVGCSARPLYPLPGRRNDRNKQPLQTFRAYNIAHRGSNGEIPEETAAAYMRAIEEGTDFIETDILASKDGALICFHDVILDDTTDIANHKEFADRKRTYDVQGVNTTGYFLVDFTLEELKLLRVKQRYPFRDQQYNGEFSIITFEEFISIALDAHRVVGIYPEIKNPVLINQHVKWPGGKKFEDKFVETLKKYGYKGSYMSKQWLKQPAFIQSFAPTSLIYISNQTDLPKIFLIDDTNTPTQDTNQSYWEITADGYLDYIKDYVVGIGPWKDTIVPCSNNYLQTPSDLIARAHARNLQVHPYTFRNENQFVHFNFSEDPYNEYDYWINKMGVDGLFTDFTGSLHHYQEWTNPFASGEKEATRLLNKIELMLSKFKYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8825" e_stop="8937"/>
            <exon e_start="9071" e_stop="9289"/>
            <exon e_start="9729" e_stop="9884"/>
            <exon e_start="10472" e_stop="10902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8825" e_stop="8937" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8938" i_stop="9070" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9071" e_stop="9289" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.905" acc_prob="0.863">
            <gDNA_intron_boundary i_start="9290" i_stop="9728" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9729" e_stop="9884" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="10472" e_stop="10902" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8825" stop="8937"/>
              <exon start="9071" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9128" stop="9289"/>
              <exon start="9729" stop="9774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9129" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9171" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9208" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9229" stop="9289"/>
              <exon start="9729" stop="9884"/>
              <exon start="10472" stop="10710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10648" stop="10902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGAGAATTTTCTATCATTACTTTTGAGGAGTTCATCTCAATTGCATTGGATGCCCATAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTCCTTATCAACCAACAC : GTCAAATGGCCAGGTGGTAAGAAATTTGAGGACAAGTTTGTTGAGACACTGAAGAAGTATGGATACAAAGGTTCATATATGTCGAAGCAATGGTTAAAGCAGCCTGCATTCATTCAATCTTTTGCGCCGACGTCACTAATTTATATATCAAACCAAACGGACCTGCCTAAGATCTTCCTCATTGATGACACAAATACACCAACTCAAGACACCAATCAG : TCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAG : GTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTGCCAAAAGAAAAAACAGGTTTCAATATATTGTAATTGGTGCAAATGACACTCTTGAAGCATTTGGACCCTCTTAACCCTATCTCTTAGATTATGGATTTATACAAGAG</gDNA_template>
            <first_frame> Q  E  N  F  L  S  L  L  L  R  S  S  S  Q  L  H  W  M  P  I  E  L  L  E  Y  I  Q  R  *  K  I  Q  S  L  S  T  N  T :   S  N  G  Q  V  V  R  N  L  R  T  S  L  L  R  H  *  R  S  M  D  T  K  V  H  I  C  R  S  N  G  *  S  S  L  H  S  F  N  L  L  R  R  R  H  *  F  I  Y  Q  T  K  R  T  C  L  R  S  S  S  L  M  T  Q  I  H  Q  L  K  T  P  I  S :   H  I  G  R  L  L  Q  M  V  I  L  I  I  S  R  I  M  W  W  G  L  V  P  G  R  T  P  *  F  L  V  P  T  I  I  C  K  H  L  L  I  S  S  Q  E  H  M  P  V  I  Y  R :   C  I  H  T  L  S  G  M  R  T  N  S  Y  T  S  T  S  V  K  I  H  T  T  S  M  T  T  G  *  T  R  W  E  L  M  A  S  S  Q  T  S  Q  A  A  F  T  T  I  R  N  G  P  I  H  L  H  L  E  K  K  K  Q  L  G  F  *  I  R  L  N  *  C  F  P  S  S  S  T  P  E  L  N  S  I  Q  H  C  L  W  Q  G  N  A  I  Y  W  S  V  Y  I  I  G  F  P  I  Y  I  C  Q  K  K  K  Q  V  S  I  Y  C  N  W  C  K  *  H  S  *  S  I  W  T  L  L  T  L  S  L  R  L  W  I  Y  T  R  </first_frame>
            <second_frame>  R  R  I  F  Y  H  Y  F  *  G  V  H  L  N  C  I  G  C  P  *  S  C  W  N  I  S  R  D  K  K  S  S  P  Y  Q  P  T   : R  Q  M  A  R  W  *  E  I  *  G  Q  V  C  *  D  T  E  E  V  W  I  Q  R  F  I  Y  V  E  A  M  V  K  A  A  C  I  H  S  I  F  C  A  D  V  T  N  L  Y  I  K  P  N  G  P  A  *  D  L  P  H  *  *  H  K  Y  T  N  S  R  H  Q  S   : V  I  L  G  D  Y  C  R  W  L  S  *  L  Y  Q  G  L  C  G  G  D  W  S  L  E  G  H  H  S  S  L  F  Q  Q  L  S  A  N  T  F  *  S  H  R  K  S  T  C  P  *  S  T   : G  A  S  I  H  F  P  E  *  E  P  I  R  T  L  Q  L  Q  *  R  S  I  Q  R  V  *  L  L  D  K  Q  D  G  S  *  W  P  L  H  R  L  H  R  Q  P  S  P  L  S  G  M  D  Q  S  I  C  I  W  R  K  R  S  N  *  A  S  E  *  D  *  I  D  A  F  Q  V  Q  V  H  L  S  *  I  L  F  N  I  V  C  G  K  A  M  L  F  I  G  L  Y  I  S  L  A  F  Q  F  I  F  A  K  R  K  N  R  F  Q  Y  I  V  I  G  A  N  D  T  L  E  A  F  G  P  S  *  P  Y  L  L  D  Y  G  F  I  Q  E </second_frame>
            <third_frame>   G  E  F  S  I  I  T  F  E  E  F  I  S  I  A  L  D  A  H  R  V  V  G  I  Y  P  E  I  K  N  P  V  L  I  N  Q  H  :  V  K  W  P  G  G  K  K  F  E  D  K  F  V  E  T  L  K  K  Y  G  Y  K  G  S  Y  M  S  K  Q  W  L  K  Q  P  A  F  I  Q  S  F  A  P  T  S  L  I  Y  I  S  N  Q  T  D  L  P  K  I  F  L  I  D  D  T  N  T  P  T  Q  D  T  N  Q  :  S  Y  W  E  I  T  A  D  G  Y  L  D  Y  I  K  D  Y  V  V  G  I  G  P  W  K  D  T  I  V  P  C  S  N  N  Y  L  Q  T  P  S  D  L  I  A  R  A  H  A  R  N  L  Q  :  V  H  P  Y  T  F  R  N  E  N  Q  F  V  H  F  N  F  S  E  D  P  Y  N  E  Y  D  Y  W  I  N  K  M  G  V  D  G  L  F  T  D  F  T  G  S  L  H  H  Y  Q  E  W  T  N  P  F  A  S  G  E  K  E  A  T  R  L  L  N  K  I  E  L  M  L  S  K  F  K  Y  T  *  V  K  F  Y  S  T  L  S  V  A  R  Q  C  Y  L  L  V  C  I  Y  H  W  L  S  N  L  Y  L  P  K  E  K  T  G  F  N  I  L  *  L  V  Q  M  T  L  L  K  H  L  D  P  L  N  P  I  S  *  I  M  D  L  Y  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8827" stop="8937"/>
                    <exon start="9071" stop="9289"/>
                    <exon start="9729" stop="9884"/>
                    <exon start="10472" stop="10711"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEFSIITFEEFISIALDAHRVVGIYPEIKNPVLINQHVKWPGGKKFEDKFVETLKKYGYKGSYMSKQWLKQPAFIQSFAPTSLIYISNQTDLPKIFLIDDTNTPTQDTNQSYWEITADGYLDYIKDYVVGIGPWKDTIVPCSNNYLQTPSDLIARAHARNLQVHPYTFRNENQFVHFNFSEDPYNEYDYWINKMGVDGLFTDFTGSLHHYQEWTNPFASGEKEATRLLNKIELMLSKFKYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9721" e_stop="9884"/>
            <exon e_start="10472" e_stop="10902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="0.945"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="9721" e_stop="9884" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="9885" i_stop="10471" i_length="587"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="10472" e_stop="10902" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9721" stop="9884"/>
              <exon start="10472" stop="10893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10648" stop="10902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTCAGTCATATTGGGAGATTACTGCAGATGGTTATCTTGATTATATCAAGGATTATGTGGTGGGGATTGGTCCCTGGAAGGACACCATAGTTCCTTGTTCCAACAATTATCTGCAAACACCTTCTGATCTCATCGCAAGAGCACATGCCCGTAATCTACAG : GTGCATCCATACACTTTCCGGAATGAGAACCAATTCGTACACTTCAACTTCAGTGAAGATCCATACAACGAGTATGACTACTGGATAAACAAGATGGGAGTTGATGGCCTCTTCACAGACTTCACAGGCAGCCTTCACCACTATCAGGAATGGACCAATCCATTTGCATCTGGAGAAAAAGAAGCAACTAGGCTTCTGAATAAGATTGAATTGATGCTTTCCAAGTTCAAGTACACCTGAGTTAAATTCTATTCAACATTGTCTGTGGCAAGGCAATGCTATTTATTGGTCTGTATATATCATTGGCTTTCCAATTTATATTTGCCAAAAGAAAAAACAGGTTTCAATATATTGTAATTGGTGCAAATGACACTCTTGAAGCATTTGGACCCTCTTAACCCTATCTCTTAGATTATGGATTTATACAAGAG</gDNA_template>
            <first_frame> H  F  S  H  I  G  R  L  L  Q  M  V  I  L  I  I  S  R  I  M  W  W  G  L  V  P  G  R  T  P  *  F  L  V  P  T  I  I  C  K  H  L  L  I  S  S  Q  E  H  M  P  V  I  Y  R :   C  I  H  T  L  S  G  M  R  T  N  S  Y  T  S  T  S  V  K  I  H  T  T  S  M  T  T  G  *  T  R  W  E  L  M  A  S  S  Q  T  S  Q  A  A  F  T  T  I  R  N  G  P  I  H  L  H  L  E  K  K  K  Q  L  G  F  *  I  R  L  N  *  C  F  P  S  S  S  T  P  E  L  N  S  I  Q  H  C  L  W  Q  G  N  A  I  Y  W  S  V  Y  I  I  G  F  P  I  Y  I  C  Q  K  K  K  Q  V  S  I  Y  C  N  W  C  K  *  H  S  *  S  I  W  T  L  L  T  L  S  L  R  L  W  I  Y  T  R  </first_frame>
            <second_frame>  I  S  V  I  L  G  D  Y  C  R  W  L  S  *  L  Y  Q  G  L  C  G  G  D  W  S  L  E  G  H  H  S  S  L  F  Q  Q  L  S  A  N  T  F  *  S  H  R  K  S  T  C  P  *  S  T   : G  A  S  I  H  F  P  E  *  E  P  I  R  T  L  Q  L  Q  *  R  S  I  Q  R  V  *  L  L  D  K  Q  D  G  S  *  W  P  L  H  R  L  H  R  Q  P  S  P  L  S  G  M  D  Q  S  I  C  I  W  R  K  R  S  N  *  A  S  E  *  D  *  I  D  A  F  Q  V  Q  V  H  L  S  *  I  L  F  N  I  V  C  G  K  A  M  L  F  I  G  L  Y  I  S  L  A  F  Q  F  I  F  A  K  R  K  N  R  F  Q  Y  I  V  I  G  A  N  D  T  L  E  A  F  G  P  S  *  P  Y  L  L  D  Y  G  F  I  Q  E </second_frame>
            <third_frame>   F  Q  S  Y  W  E  I  T  A  D  G  Y  L  D  Y  I  K  D  Y  V  V  G  I  G  P  W  K  D  T  I  V  P  C  S  N  N  Y  L  Q  T  P  S  D  L  I  A  R  A  H  A  R  N  L  Q  :  V  H  P  Y  T  F  R  N  E  N  Q  F  V  H  F  N  F  S  E  D  P  Y  N  E  Y  D  Y  W  I  N  K  M  G  V  D  G  L  F  T  D  F  T  G  S  L  H  H  Y  Q  E  W  T  N  P  F  A  S  G  E  K  E  A  T  R  L  L  N  K  I  E  L  M  L  S  K  F  K  Y  T  *  V  K  F  Y  S  T  L  S  V  A  R  Q  C  Y  L  L  V  C  I  Y  H  W  L  S  N  L  Y  L  P  K  E  K  T  G  F  N  I  L  *  L  V  Q  M  T  L  L  K  H  L  D  P  L  N  P  I  S  *  I  M  D  L  Y  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9723" stop="9884"/>
                    <exon start="10472" stop="10711"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQSYWEITADGYLDYIKDYVVGIGPWKDTIVPCSNNYLQTPSDLIARAHARNLQVHPYTFRNENQFVHFNFSEDPYNEYDYWINKMGVDGLFTDFTGSLHHYQEWTNPFASGEKEATRLLNKIELMLSKFKYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10900" PGL_stop="10475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10900" e_stop="10475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="10900" e_stop="10475" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10900" stop="10475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTATAAATCCATAATCTAAGAGATAGGGTTAAGAGGGTCCAAATGCTTCAAGAGTGTCATTTGCACCAATTACAATATATTGAAACCTGTTTTTTCTTTTGGCAAATATAAATTGGAAAGCCAATGATATATACAGACCAATAAATAGCATTGCCTTGCCACAGACAATGTTGAATAGAATTTAACTCAGGTGTACTTGAACTTGGAAAGCATCAATTCAATCTTATTCAGAAGCCTAGTTGCTTCTTTTTCTCCAGATGCAAATGGATTGGTCCATTCCTGATAGTGGTGAAGGCTGCCTGTGAAGTCTGTGAAGAGGCCATCAACTCCCATCTTGTTTATCCAGTAGTCATACTCGTTGTATGGATCTTCACTGAAGTTGAAGTGTACGAATTGGTTCTCATTCCGGAAAGTGTATGGATG</gDNA_template>
            <first_frame> L  V  *  I  H  N  L  R  D  R  V  K  R  V  Q  M  L  Q  E  C  H  L  H  Q  L  Q  Y  I  E  T  C  F  F  F  W  Q  I  *  I  G  K  P  M  I  Y  T  D  Q  *  I  A  L  P  C  H  R  Q  C  *  I  E  F  N  S  G  V  L  E  L  G  K  H  Q  F  N  L  I  Q  K  P  S  C  F  F  F  S  R  C  K  W  I  G  P  F  L  I  V  V  K  A  A  C  E  V  C  E  E  A  I  N  S  H  L  V  Y  P  V  V  I  L  V  V  W  I  F  T  E  V  E  V  Y  E  L  V  L  I  P  E  S  V  W  M </first_frame>
            <second_frame>  L  Y  K  S  I  I  *  E  I  G  L  R  G  S  K  C  F  K  S  V  I  C  T  N  Y  N  I  L  K  P  V  F  S  F  G  K  Y  K  L  E  S  Q  *  Y  I  Q  T  N  K  *  H  C  L  A  T  D  N  V  E  *  N  L  T  Q  V  Y  L  N  L  E  S  I  N  S  I  L  F  R  S  L  V  A  S  F  S  P  D  A  N  G  L  V  H  S  *  *  W  *  R  L  P  V  K  S  V  K  R  P  S  T  P  I  L  F  I  Q  *  S  Y  S  L  Y  G  S  S  L  K  L  K  C  T  N  W  F  S  F  R  K  V  Y  G   </second_frame>
            <third_frame>   C  I  N  P  *  S  K  R  *  G  *  E  G  P  N  A  S  R  V  S  F  A  P  I  T  I  Y  *  N  L  F  F  L  L  A  N  I  N  W  K  A  N  D  I  Y  R  P  I  N  S  I  A  L  P  Q  T  M  L  N  R  I  *  L  R  C  T  *  T  W  K  A  S  I  Q  S  Y  S  E  A  *  L  L  L  F  L  Q  M  Q  M  D  W  S  I  P  D  S  G  E  G  C  L  *  S  L  *  R  G  H  Q  L  P  S  C  L  S  S  S  H  T  R  C  M  D  L  H  *  S  *  S  V  R  I  G  S  H  S  G  K  C  M  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10723" stop="10475"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEFNSGVLELGKHQFNLIQKPSCFFFSRCKWIGPFLIVVKAACEVCEEAINSHLVYPVVILVVWIFTEVEVYELVLIPESVWM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="31342" PGL_stop="41362"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31342" e_stop="31442"/>
            <exon e_start="31524" e_stop="31649"/>
            <exon e_start="31780" e_stop="31842"/>
            <exon e_start="31958" e_stop="32046"/>
            <exon e_start="32199" e_stop="32289"/>
            <exon e_start="32406" e_stop="32555"/>
            <exon e_start="32646" e_stop="32998"/>
            <exon e_start="33645" e_stop="33800"/>
            <exon e_start="33919" e_stop="34062"/>
            <exon e_start="35618" e_stop="35685"/>
            <exon e_start="35764" e_stop="35929"/>
            <exon e_start="36032" e_stop="36094"/>
            <exon e_start="36444" e_stop="36539"/>
            <exon e_start="36806" e_stop="36973"/>
            <exon e_start="39136" e_stop="39306"/>
            <exon e_start="40252" e_stop="40401"/>
            <exon e_start="40467" e_stop="40598"/>
            <exon e_start="41007" e_stop="41362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.598" acc_prob="1.000" e_score="0.970"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.959" e_score="0.989"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.968"/>
          <exon-intron don_prob="0.308" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="31342" e_stop="31442" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.598" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31443" i_stop="31523" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31524" e_stop="31649" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="31650" i_stop="31779" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31780" e_stop="31842" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="31843" i_stop="31957" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31958" e_stop="32046" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32047" i_stop="32198" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32199" e_stop="32289" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32290" i_stop="32405" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32406" e_stop="32555" e_length="150"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.958">
            <gDNA_intron_boundary i_start="32556" i_stop="32645" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="32646" e_stop="32998" e_length="353"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.959">
            <gDNA_intron_boundary i_start="32999" i_stop="33644" i_length="646"/>
          </intron>
          <exon e_serial="8" e_score="0.968">
            <gDNA_exon_boundary e_start="33645" e_stop="33800" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33801" i_stop="33918" i_length="118"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33919" e_stop="34062" e_length="144"/>
          </exon>
          <intron i_serial="9" don_prob="0.308" acc_prob="0.973">
            <gDNA_intron_boundary i_start="34063" i_stop="35617" i_length="1555"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="35618" e_stop="35685" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.933" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35686" i_stop="35763" i_length="78"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="35764" e_stop="35929" e_length="166"/>
          </exon>
          <intron i_serial="11" don_prob="0.972" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35930" i_stop="36031" i_length="102"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="36032" e_stop="36094" e_length="63"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36095" i_stop="36443" i_length="349"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="36444" e_stop="36539" e_length="96"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36540" i_stop="36805" i_length="266"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="36806" e_stop="36973" e_length="168"/>
          </exon>
          <intron i_serial="14" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36974" i_stop="39135" i_length="2162"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="39136" e_stop="39306" e_length="171"/>
          </exon>
          <intron i_serial="15" don_prob="0.887" acc_prob="0.982">
            <gDNA_intron_boundary i_start="39307" i_stop="40251" i_length="945"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="40252" e_stop="40401" e_length="150"/>
          </exon>
          <intron i_serial="16" don_prob="0.985" acc_prob="0.967">
            <gDNA_intron_boundary i_start="40402" i_stop="40466" i_length="65"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="40467" e_stop="40598" e_length="132"/>
          </exon>
          <intron i_serial="17" don_prob="0.997" acc_prob="0.943">
            <gDNA_intron_boundary i_start="40599" i_stop="41006" i_length="408"/>
          </intron>
          <exon e_serial="18" e_score="0.986">
            <gDNA_exon_boundary e_start="41007" e_stop="41362" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31342" stop="31442"/>
              <exon start="31524" stop="31649"/>
              <exon start="31780" stop="31842"/>
              <exon start="31958" stop="32046"/>
              <exon start="32199" stop="32289"/>
              <exon start="32406" stop="32488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32447" stop="32555"/>
              <exon start="32646" stop="32998"/>
              <exon start="33645" stop="33717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32488" stop="32555"/>
              <exon start="32646" stop="32998"/>
              <exon start="33645" stop="33800"/>
              <exon start="33919" stop="33948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33940" stop="34062"/>
              <exon start="35618" stop="35685"/>
              <exon start="35764" stop="35929"/>
              <exon start="36032" stop="36094"/>
              <exon start="36444" stop="36539"/>
              <exon start="36806" stop="36973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33940" stop="34062"/>
              <exon start="35618" stop="35685"/>
              <exon start="35764" stop="35929"/>
              <exon start="36032" stop="36094"/>
              <exon start="36444" stop="36539"/>
              <exon start="36806" stop="36869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33941" stop="34062"/>
              <exon start="35618" stop="35665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33942" stop="34062"/>
              <exon start="35618" stop="35685"/>
              <exon start="35764" stop="35929"/>
              <exon start="36032" stop="36094"/>
              <exon start="36444" stop="36539"/>
              <exon start="36806" stop="36855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34024" stop="34062"/>
              <exon start="35618" stop="35685"/>
              <exon start="35764" stop="35929"/>
              <exon start="36032" stop="36094"/>
              <exon start="36444" stop="36539"/>
              <exon start="36806" stop="36842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35871" stop="35929"/>
              <exon start="36032" stop="36094"/>
              <exon start="36444" stop="36539"/>
              <exon start="36806" stop="36973"/>
              <exon start="39136" stop="39214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36485" stop="36539"/>
              <exon start="36806" stop="36973"/>
              <exon start="39136" stop="39306"/>
              <exon start="40252" stop="40401"/>
              <exon start="40467" stop="40476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36958" stop="36973"/>
              <exon start="39136" stop="39306"/>
              <exon start="40252" stop="40401"/>
              <exon start="40467" stop="40598"/>
              <exon start="41007" stop="41162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36958" stop="36973"/>
              <exon start="39136" stop="39306"/>
              <exon start="40252" stop="40401"/>
              <exon start="40467" stop="40598"/>
              <exon start="41007" stop="41103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39156" stop="39306"/>
              <exon start="40252" stop="40401"/>
              <exon start="40467" stop="40529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39245" stop="39306"/>
              <exon start="40252" stop="40401"/>
              <exon start="40467" stop="40598"/>
              <exon start="41007" stop="41362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41064" stop="41356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTATATGCAGGTTATCTATATAGCACCTTTAAAGGCTATTGTTCGGGAGAGAATGACGGACTGGAGAAAACGTCTTGTTTCCCAACTTGGAAAGAAGATG : GTTGAAATGACTGGTGACTACACCCCGGATCTAATGGCTCTCTTGTCAGCAGACATCATAATCTCCACTCCTGAAAAGTGGGATGGTATTAGTCGCAATTGGCATAGTCGAAGCTATGTCACTAAG : GTTGGGCTTATGATTTTGGATGAGATTCATTTACTTGGAGCTGATCGAGGACCCATACTTGAG : GTTATTGTCTCAAGGATGAGATATATATCTTCTCAAACAGAGCGGCCAGTTCGGTTTGTTGGCCTGTCAACAGCATTAGCAAATGCACA : CAATTTGGCTGATTGGTTGGGTGTCGATGAAACTGGCCTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTTCCTCTTGAAGTTCATATTCAG : GGATATCCTGGAAAGTTTTACTGCCCGAGGATGAATAGTATGAACAAGCCCACATATGCTGCTATATGTACACATTCACCAACAAAACCAGTTCTAATCTTTGTCTCCTCTCGTCGCCAAACGAGGCTTACAGCACTGGACCTTATCCAG : TTTGCGGCTTCAGATGAGCACCCAAGGCAGTTCATAAGCATGCCAGAAGATTCACTTCAAATGGTTCTTTCTCAAGTCACAGACCAGAACTTGAAGCACACTTTACAATTTGGAATTGGATTACACCATGCCGGGCTGAATGATAAAGACAGATCATTGGTTGAGGAACTGTTTGCAAACAACAAGATCCAGGCAACTATGTCATCCTGAAATTTGTAGATCTGTAGGAGTAATAATATGATGAAATTGGAAATTACATTTGAGTCATTTTGGCTGCATCTTTTTAGGTGTTGGTTTGTACAAGTACGTTAGCATGGGGTGTAAACCTTCCTGCACATTTGGTTGTTATTAAG : GGAACAGAGTTTTATGATGGGAAAGCAAAAAGATATGTTGATTTCCCAATCACTGATATATTACAAATGATGGGTCGAGCTGGTCGTCCACAATATGATCAACATGGGAAAGCTGTTATTCTTGTTCATGAACCCAAGAAGAGCTTTTATAAAAAG : TTTCTATATGAACCATTCCCAGTTGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG : ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG : CTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG : GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG : GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG : GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG : GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG : GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG : GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG : GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAATGTCCA</gDNA_template>
            <first_frame> S  I  C  R  L  S  I  *  H  L  *  R  L  L  F  G  R  E  *  R  T  G  E  N  V  L  F  P  N  L  E  R  R  W :   L  K  *  L  V  T  T  P  R  I  *  W  L  S  C  Q  Q  T  S  *  S  P  L  L  K  S  G  M  V  L  V  A  I  G  I  V  E  A  M  S  L  R :   L  G  L  *  F  W  M  R  F  I  Y  L  E  L  I  E  D  P  Y  L  R :   L  L  S  Q  G  *  D  I  Y  L  L  K  Q  S  G  Q  F  G  L  L  A  C  Q  Q  H  *  Q  M  H   : T  I  W  L  I  G  W  V  S  M  K  L  A  S  S  I  S  S  Q  V  *  G  L  F  L  L  K  F  I  F  R :   D  I  L  E  S  F  T  A  R  G  *  I  V  *  T  S  P  H  M  L  L  Y  V  H  I  H  Q  Q  N  Q  F  *  S  L  S  P  L  V  A  K  R  G  L  Q  H  W  T  L  S  S :   L  R  L  Q  M  S  T  Q  G  S  S  *  A  C  Q  K  I  H  F  K  W  F  F  L  K  S  Q  T  R  T  *  S  T  L  Y  N  L  E  L  D  Y  T  M  P  G  *  M  I  K  T  D  H  W  L  R  N  C  L  Q  T  T  R  S  R  Q  L  C  H  P  E  I  C  R  S  V  G  V  I  I  *  *  N  W  K  L  H  L  S  H  F  G  C  I  F  L  G  V  G  L  Y  K  Y  V  S  M  G  C  K  P  S  C  T  F  G  C  Y  *   : G  N  R  V  L  *  W  E  S  K  K  I  C  *  F  P  N  H  *  Y  I  T  N  D  G  S  S  W  S  S  T  I  *  S  T  W  E  S  C  Y  S  C  S  *  T  Q  E  E  L  L  *  K   : V  S  I  *  T  I  P  S  *  K  *  P  E  R  A  T  S  *  P  H  Q  R  *  D  C  Y  W  N  N  L  S  *  R  G  R  Y  A  L  S  H  L  D  L  L  V  S  *  I   : D  G  *  P  S  L  L  W  P  R  A  C  R  T  W  D  S  K  F  L  F  V  *  :  L  G  A  K  H  I  *  G  S  *  R  L  W  M  H  Q  G  Y  R  G  Q  C  *  T  T  D  V  G  L  N  S  I  S  V  L  S  E  V  H  H  C  I  N  V  W  L  K  N  R  I  *  Y  I  T  *   : G  F  P  T  N  T  V  W  C  F  *  I  *  *  A  P  G  E  A  *  *   : G  K  L  Q  *  K  I  S  *  E  S  S  I  C  C  R  P  Q  S  P  G  *  S  S  C  E  S  K  S  A  L  S   : G  S  F  F  P  I  R  V  A  N  Q  R  L  C  H  R  L  K  V  C  A  G  S  K  Y  T  C  Y  P  G  Y  D  R  Y  L  C  Q  Q  W  M  A  L  K  Y  H  Y  L  Y  A  S  V  A  N  G  H  A   : G  L  V  V  *  *  R  L  S  S  L  D  V  T  M  H  D  *  *  S  T  Q  L  I  A  K  K  R  N  C  *  Y  P  A  A  V  G  L  P  F  R  I  I  T  G  Y  H  W  K  F  S  C  L  E  T  V  S   : G  Y  A  A  F  P  S  D  S  S  S  T  *  N  S  A  K  G  I  *  W  W  K  D  F  N  L  E  H  *  I  G  R  C  K  Y  S  A  K  N  S  K  S  F  Y  P  T  I  S  K   : G  K  R  *  S  L  V  V  S  P  L  *  Y  F  R  K  *  T  V  C  S  E  E  S  V  F  L  W  S  F  A  D  T  H  G  F  A  I  H  S  D  Q  F  P   : G  D  K  A  H  S  S  I  G  F  L  H  W  V  *  T  R  T  L  Y  *  R  I  D  L  I  W  K  K  L  Y  Q  L  Q  I  V  M  Q  C  S  Q  N  Q  D  L  T  L  Y  S  T  K  A  H  F  F  T  I  S  Y  R  S  C  V  T  V  Y  I  C  N  E  I  L  L  C  N  F  L  E  *  L  I  G  I  L  H  F  S  L  S  C  R  S  N  C  I  Y  A  S  G  Y  C  *  K  S  Y  T  H  T  L  I  N  I  E  L  S  I  Q  C  P </first_frame>
            <second_frame>  L  Y  A  G  Y  L  Y  S  T  F  K  G  Y  C  S  G  E  N  D  G  L  E  K  T  S  C  F  P  T  W  K  E  D   : G  *  N  D  W  *  L  H  P  G  S  N  G  S  L  V  S  R  H  H  N  L  H  S  *  K  V  G  W  Y  *  S  Q  L  A  *  S  K  L  C  H  *   : G  W  A  Y  D  F  G  *  D  S  F  T  W  S  *  S  R  T  H  T  *   : G  Y  C  L  K  D  E  I  Y  I  F  S  N  R  A  A  S  S  V  C  W  P  V  N  S  I  S  K  C  T  :  Q  F  G  *  L  V  G  C  R  *  N  W  P  L  Q  F  Q  A  K  C  E  A  C  S  S  *  S  S  Y  S   : G  I  S  W  K  V  L  L  P  E  D  E  *  Y  E  Q  A  H  I  C  C  Y  M  Y  T  F  T  N  K  T  S  S  N  L  C  L  L  S  S  P  N  E  A  Y  S  T  G  P  Y  P   : V  C  G  F  R  *  A  P  K  A  V  H  K  H  A  R  R  F  T  S  N  G  S  F  S  S  H  R  P  E  L  E  A  H  F  T  I  W  N  W  I  T  P  C  R  A  E  *  *  R  Q  I  I  G  *  G  T  V  C  K  Q  Q  D  P  G  N  Y  V  I  L  K  F  V  D  L  *  E  *  *  Y  D  E  I  G  N  Y  I  *  V  I  L  A  A  S  F  *  V  L  V  C  T  S  T  L  A  W  G  V  N  L  P  A  H  L  V  V  I  K  :  G  T  E  F  Y  D  G  K  A  K  R  Y  V  D  F  P  I  T  D  I  L  Q  M  M  G  R  A  G  R  P  Q  Y  D  Q  H  G  K  A  V  I  L  V  H  E  P  K  K  S  F  Y  K  K  :  F  L  Y  E  P  F  P  V  E  S  S  L  R  E  Q  L  H  D  H  I  N  A  E  I  V  T  G  T  I  S  H  K  E  D  A  M  H  Y  L  T  W  T  Y  L  F  R  R  L  :  M  V  N  P  A  Y  Y  G  L  E  H  A  E  P  G  I  L  N  S  Y  L  S  S :   L  V  Q  S  T  F  E  D  L  E  D  S  G  C  I  K  V  T  E  D  S  V  E  P  L  M  L  G  S  I  A  S  Q  Y  Y  L  K  Y  T  T  V  S  M  F  G  S  K  I  G  S  D  T  S  L  E  :  V  F  L  Q  I  L  S  G  A  S  E  Y  D  E  L  P  V  R  H  N  E  :  E  N  Y  N  E  K  L  A  E  K  V  P  Y  A  V  D  H  N  R  L  D  D  P  H  V  K  A  N  L  L  F  Q  :  A  H  F  S  Q  S  E  L  P  I  S  D  Y  V  T  D  L  K  S  V  L  D  Q  S  I  R  V  I  Q  A  M  I  D  I  C  A  N  S  G  W  L  S  S  T  I  T  C  M  H  L  L  Q  M  V  M  Q  :  G  L  W  F  D  R  D  S  P  L  W  M  L  P  C  M  T  D  D  L  L  N  S  L  Q  K  K  G  I  A  S  I  Q  Q  L  L  D  C  P  S  E  S  L  R  A  I  T  G  S  S  A  A  S  K  L  Y  Q  :  D  M  R  H  F  P  R  I  Q  V  R  L  K  I  Q  P  K  E  S  N  G  G  K  I  L  T  L  N  I  R  L  E  D  A  N  T  Q  R  R  T  A  K  A  F  I  P  R  Y  P  K  :  V  K  D  E  A  W  W  L  V  L  C  N  T  S  A  S  E  L  Y  A  L  K  R  V  S  F  S  G  R  L  Q  T  H  M  D  L  P  S  T  L  T  N  F  Q  :  G  I  K  L  I  L  V  S  D  S  Y  I  G  F  E  Q  E  H  S  I  E  G  L  T  *  S  G  R  N  Y  T  N  S  R  L  *  C  N  A  P  K  I  R  I  *  L  C  I  A  Q  R  L  T  F  S  Q  S  V  I  E  V  V  L  R  S  T  F  V  M  R  Y  C  F  V  I  F  L  S  N  *  S  A  S  F  I  F  L  C  H  V  D  P  I  V  Y  M  H  Q  G  T  V  E  S  L  I  H  T  P  *  S  I  *  S  F  P  F  N  V   </second_frame>
            <third_frame>   Y  M  Q  V  I  Y  I  A  P  L  K  A  I  V  R  E  R  M  T  D  W  R  K  R  L  V  S  Q  L  G  K  K  M  :  V  E  M  T  G  D  Y  T  P  D  L  M  A  L  L  S  A  D  I  I  I  S  T  P  E  K  W  D  G  I  S  R  N  W  H  S  R  S  Y  V  T  K  :  V  G  L  M  I  L  D  E  I  H  L  L  G  A  D  R  G  P  I  L  E  :  V  I  V  S  R  M  R  Y  I  S  S  Q  T  E  R  P  V  R  F  V  G  L  S  T  A  L  A  N  A  H :   N  L  A  D  W  L  G  V  D  E  T  G  L  F  N  F  K  P  S  V  R  P  V  P  L  E  V  H  I  Q  :  G  Y  P  G  K  F  Y  C  P  R  M  N  S  M  N  K  P  T  Y  A  A  I  C  T  H  S  P  T  K  P  V  L  I  F  V  S  S  R  R  Q  T  R  L  T  A  L  D  L  I  Q  :  F  A  A  S  D  E  H  P  R  Q  F  I  S  M  P  E  D  S  L  Q  M  V  L  S  Q  V  T  D  Q  N  L  K  H  T  L  Q  F  G  I  G  L  H  H  A  G  L  N  D  K  D  R  S  L  V  E  E  L  F  A  N  N  K  I  Q  A  T  M  S  S  *  N  L  *  I  C  R  S  N  N  M  M  K  L  E  I  T  F  E  S  F  W  L  H  L  F  R  C  W  F  V  Q  V  R  *  H  G  V  *  T  F  L  H  I  W  L  L  L  R :   E  Q  S  F  M  M  G  K  Q  K  D  M  L  I  S  Q  S  L  I  Y  Y  K  *  W  V  E  L  V  V  H  N  M  I  N  M  G  K  L  L  F  L  F  M  N  P  R  R  A  F  I  K  S :   F  Y  M  N  H  S  Q  L  K  V  A  *  E  S  N  F  M  T  T  S  T  L  R  L  L  L  E  Q  S  L  I  K  R  T  L  C  I  I  S  L  G  P  T  C  F  V  D  * :   W  L  T  Q  L  T  M  A  *  S  M  Q  N  L  G  F  *  I  L  I  C  L   : A  W  C  K  A  H  L  R  I  L  K  T  L  D  A  S  R  L  P  R  T  V  L  N  H  *  C  W  A  Q  *  H  L  S  I  I  *  S  T  P  L  Y  Q  C  L  A  Q  K  *  D  L  I  H  H  L  R :   F  S  Y  K  Y  C  L  V  L  L  N  M  M  S  S  R  *  G  I  M  R :   K  T  T  M  K  N  *  L  R  K  F  H  M  L  S  T  T  I  A  W  M  I  L  M  *  K  Q  I  C  S  F  R :   L  I  F  P  N  Q  S  C  Q  S  A  I  M  S  Q  T  *  S  L  C  W  I  K  V  Y  V  L  S  R  L  *  *  I  F  V  P  T  V  D  G  S  Q  V  P  L  P  V  C  I  C  C  K  W  S  C  R :   A  C  G  L  I  E  T  L  L  F  G  C  Y  H  A  *  L  M  I  Y  S  T  H  C  K  K  K  E  L  L  V  S  S  S  C  W  I  A  L  Q  N  H  Y  G  L  S  L  E  V  Q  L  P  R  N  C  I  R :   I  C  G  I  S  L  G  F  K  F  D  L  K  F  S  Q  R  N  L  M  V  E  R  F  *  P  *  T  L  D  W  K  M  Q  I  L  S  E  E  Q  Q  K  L  L  S  H  D  I  Q  R :   *  K  M  K  L  G  G  *  S  F  V  I  L  P  Q  V  N  C  M  L  *  R  E  C  L  S  L  V  V  C  R  H  T  W  I  C  H  P  L  *  P  I  S  R :   G  *  S  S  F  *  Y  R  I  L  T  L  G  L  N  K  N  T  L  L  K  D  *  L  N  L  E  E  T  I  P  T  P  D  C  N  A  M  L  P  K  S  G  F  D  F  V  *  H  K  G  S  L  F  H  N  Q  L  *  K  L  C  Y  G  L  H  L  *  *  D  I  A  L  *  F  S  *  V  I  D  R  H  P  S  F  F  F  V  M  *  I  Q  L  Y  I  C  I  R  V  L  L  K  V  L  Y  T  H  P  N  Q  Y  R  A  F  H  S  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32933" stop="32998"/>
                    <exon start="33645" stop="33800"/>
                    <exon start="33919" stop="34062"/>
                    <exon start="35618" stop="35685"/>
                    <exon start="35764" stop="35929"/>
                    <exon start="36032" stop="36094"/>
                    <exon start="36444" stop="36539"/>
                    <exon start="36806" stop="36973"/>
                    <exon start="39136" stop="39306"/>
                    <exon start="40252" stop="40401"/>
                    <exon start="40467" stop="40598"/>
                    <exon start="41007" stop="41081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLVCTSTLAWGVNLPAHLVVIKGTEFYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREQLHDHINAEIVTGTISHKEDAMHYLTWTYLFRRLMVNPAYYGLEHAEPGILNSYLSSLVQSTFEDLEDSGCIKVTEDSVEPLMLGSIASQYYLKYTTVSMFGSKIGSDTSLEVFLQILSGASEYDELPVRHNEENYNEKLAEKVPYAVDHNRLDDPHVKANLLFQAHFSQSELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSTITCMHLLQMVMQGLWFDRDSPLWMLPCMTDDLLNSLQKKGIASIQQLLDCPSESLRAITGSSAASKLYQDMRHFPRIQVRLKIQPKESNGGKILTLNIRLEDANTQRRTAKAFIPRYPKVKDEAWWLVLCNTSASELYALKRVSFSGRLQTHMDLPSTLTNFQGIKLILVSDSYIGFEQEHSIEGLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31344" stop="31442"/>
                    <exon start="31524" stop="31649"/>
                    <exon start="31780" stop="31842"/>
                    <exon start="31958" stop="32046"/>
                    <exon start="32199" stop="32289"/>
                    <exon start="32406" stop="32555"/>
                    <exon start="32646" stop="32855"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMQVIYIAPLKAIVRERMTDWRKRLVSQLGKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERPVRFVGLSTALANAHNLADWLGVDETGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFISMPEDSLQMVLSQVTDQNLKHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQATMSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="46142" PGL_stop="41780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46142" e_stop="45706"/>
            <exon e_start="44291" e_stop="44100"/>
            <exon e_start="42685" e_stop="42526"/>
            <exon e_start="42426" e_stop="42324"/>
            <exon e_start="42229" e_stop="42148"/>
            <exon e_start="42074" e_stop="41798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.739" acc_prob="0.604" e_score="0.998"/>
          <exon-intron don_prob="0.960" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.438" e_score="1.000"/>
          <exon-intron don_prob="0.088" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="46142" e_stop="45706" e_length="437"/>
          </exon>
          <intron i_serial="1" don_prob="0.739" acc_prob="0.604">
            <gDNA_intron_boundary i_start="45705" i_stop="44292" i_length="1414"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44291" e_stop="44100" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.937">
            <gDNA_intron_boundary i_start="44099" i_stop="42686" i_length="1414"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42685" e_stop="42526" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.899" acc_prob="0.438">
            <gDNA_intron_boundary i_start="42525" i_stop="42427" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42426" e_stop="42324" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.088" acc_prob="0.695">
            <gDNA_intron_boundary i_start="42323" i_stop="42230" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42229" e_stop="42148" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.926" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42147" i_stop="42075" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42074" e_stop="41798" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46142" stop="45706"/>
              <exon start="44291" stop="44189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46109" stop="45706"/>
              <exon start="44291" stop="44203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46106" stop="45706"/>
              <exon start="44291" stop="44105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46090" stop="45706"/>
              <exon start="44291" stop="44139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46055" stop="45706"/>
              <exon start="44291" stop="44100"/>
              <exon start="42685" stop="42526"/>
              <exon start="42426" stop="42324"/>
              <exon start="42229" stop="42176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46012" stop="45706"/>
              <exon start="44291" stop="44100"/>
              <exon start="42685" stop="42551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46012" stop="45803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46004" stop="45706"/>
              <exon start="44291" stop="44107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45737" stop="45706"/>
              <exon start="44291" stop="44100"/>
              <exon start="42685" stop="42526"/>
              <exon start="42426" stop="42324"/>
              <exon start="42229" stop="42148"/>
              <exon start="42074" stop="41992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45737" stop="45706"/>
              <exon start="44291" stop="44100"/>
              <exon start="42685" stop="42526"/>
              <exon start="42426" stop="42324"/>
              <exon start="42229" stop="42159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44188" stop="44100"/>
              <exon start="42685" stop="42526"/>
              <exon start="42426" stop="42324"/>
              <exon start="42229" stop="42148"/>
              <exon start="42074" stop="41892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42589" stop="42526"/>
              <exon start="42426" stop="42324"/>
              <exon start="42229" stop="42148"/>
              <exon start="42074" stop="41798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275577" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAACTTCTCCTTCGAAGTTCGATCTACCCTCCTCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG : GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG : GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC : CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG : GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG : GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGA</gDNA_template>
            <first_frame> A  T  S  P  S  K  F  D  L  P  S  S  D  C  F  H  F  T  S  D  L  G  F  R  *  S  H  P  Q  V  F  N  A  F  D  F  L  F  C  E  E  *  Q  I  L  V  E  H  F  P  L  L  K  L  H  L  P  P  K  Q  V  R  P  E  P  E  P  E  L  P  V  E  M  T  S  Y  S  G  C  P  A  Q  Q  L  R  A  M  G  S  G  T  M  *  Y  W  Y  Y  H  R  F  C  S  Y  C  T  *  G  F  M  L  G  A  T  L  R  S  S  V  I  V  G  L  L  *  *  L  D  T  M  D  F  C  G  L  L  F  F  *  T  F  V  G  A  F  F  R :   H  G  S  A  L  Q  G  S  R  W  L  G  I  F  Y  R  C  L  Q  R  L  Q  C  Y  F  W  R  L  A  *  W  H  S  Y  L  R  R  I  M  R  A  V  W  K  L  Y  H  V  L  S  W  F  Q  A  F  L  L  A  W  I  Y  Y  *  R :   Q  F  I  Y  L  D  L  V  F  H  F  S  L  T  W  K  *  L  I  G  G  S  G  V  S  G  A  P  T  S  F  F  L  L  Q  L  M  A  T  Y  C  L  C  I  S  Q  S  G  E  I  S  C  L  :  H  V  Q  P  F  T  I  T  S  S  S  C  L  *  Q  V  L  *  C  Y  L  P  V  G  L  Q  A  L  G  V  A  L  D  F   : G  C  I  I  *  L  *  F  V  I  T  R  F  I  F  H  F  F  T  *  R  S  W  L  I  F  S  R :   R  K  I  G  F  W  T  A  H  I  T  Q  R  *  K  M  Q  G  F  L  M  Q  T  G  S  K  L  V  K  L  *  T  N  K  Q  S  Q  H  V  I  V  N  I  D  W  L  V  L  *  E  T  K  L  I  V  I  Q  V  I  A  L  S  S  L  F  A  G  *  D  H  *  S  T  W  Q  K  Y  K  K  E  Q  L  K  C  Y  C  K  D  M  Y  F  * </first_frame>
            <second_frame>  Q  L  L  L  R  S  S  I  Y  P  P  P  I  A  S  I  S  R  R  T  *  G  S  D  D  L  I  H  K  F  S  M  P  L  I  F  Y  S  A  K  N  D  K  F  *  W  S  I  F  H  Y  *  S  F  I  S  H  R  S  R  S  G  P  N  R  N  R  N  C  R  *  R  *  L  H  I  P  V  V  Q  L  S  N  C  V  P  W  V  L  A  R  C  D  T  G  I  T  I  G  F  V  R  T  V  L  R  V  S  C  *  E  Q  H  *  E  A  Q  S  S  S  V  F  C  N  D  W  I  L  W  T  F  V  V  C  C  S  F  K  P  L  L  V  L  S  S   : G  M  A  V  H  S  R  E  A  G  G  L  E  S  F  I  V  V  C  N  V  C  N  A  I  S  G  D  *  H  S  G  I  L  T  *  G  E  L  C  E  L  F  G  N  F  I  T  Y  F  H  G  F  R  P  F  C  W  R  G  F  T  I  K   : G  N  L  Y  I  W  T  W  Y  S  T  F  P  *  H  G  N  S  *  *  G  E  V  A  C  L  E  H  Q  Q  A  S  S  Y  C  S  L  W  L  H  I  V  C  A  F  L  K  V  E  R  *  A  A  S :   T  S  S  L  L  Q  L  R  H  R  H  V  C  D  K  C  C  N  V  I  C  L  W  A  C  R  H  *  G  W  L  W  T  L  :  V  V  *  F  D  C  S  L  L  S  L  A  L  S  S  I  S  L  R  D  V  P  G  *  F  F  Q   : G  G  R  L  A  S  G  Q  R  I  L  L  R  D  E  R  C  R  V  F  *  C  R  R  G  V  S  L  *  N  C  R  Q  I  S  S  P  N  M  *  L  *  I  L  T  G  W  Y  Y  E  K  Q  N  *  *  L  F  K  *  L  H  C  L  A  Y  L  L  V  E  I  I  D  P  L  G  K  S  I  R  K  N  N  *  N  V  I  V  K  I  C  I  F   </second_frame>
            <third_frame>   N  F  S  F  E  V  R  S  T  L  L  R  L  L  P  F  H  V  G  P  R  V  P  M  I  S  S  T  S  F  Q  C  L  *  F  S  I  L  R  R  M  T  N  F  S  G  A  F  S  I  T  E  A  S  S  P  T  E  A  G  P  A  R  T  G  T  G  T  A  G  R  D  D  F  I  F  R  L  S  S  S  A  T  A  C  H  G  F  W  H  D  V  I  L  V  L  P  S  V  L  F  V  L  Y  L  G  F  H  A  R  S  N  I  K  K  L  S  H  R  R  S  F  V  M  I  G  Y  Y  G  L  L  W  F  A  V  L  L  N  L  C  W  C  F  L  Q  :  A  W  Q  C  T  P  G  K  Q  V  A  W  N  L  L  S  L  F  A  T  S  A  M  L  F  L  E  I  S  I  V  A  F  L  L  K  E  N  Y  A  S  C  L  E  T  L  S  R  T  F  M  V  S  G  L  F  V  G  V  D  L  L  L  K  :  A  I  Y  I  F  G  L  G  I  P  L  F  L  D  M  E  I  A  D  R  G  K  W  R  V  W  S  T  N  K  L  L  L  T  A  A  Y  G  Y  I  L  F  V  H  F  S  K  W  R  D  K  L  P   : P  R  P  A  F  Y  N  Y  V  I  V  M  F  V  T  S  A  V  M  L  F  A  C  G  L  A  G  I  R  G  G  F  G  L  W :   L  Y  N  L  T  V  V  C  Y  H  S  L  Y  L  P  F  L  Y  V  T  F  L  A  D  F  F  K  :  E  E  D  W  L  L  D  S  A  Y  Y  S  E  M  K  D  A  G  F  F  D  A  D  G  E  *  A  C  K  T  V  D  K  *  A  V  P  T  C  N  C  K  Y  *  L  A  G  I  M  R  N  K  T  N  S  Y  S  S  D  C  I  V  *  L  I  C  W  L  R  S  L  I  H  L  A  K  V  *  E  R  T  T  K  M  L  L  *  R  Y  V  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46038" stop="45706"/>
                    <exon start="44291" stop="44100"/>
                    <exon start="42685" stop="42526"/>
                    <exon start="42426" stop="42324"/>
                    <exon start="42229" stop="42148"/>
                    <exon start="42074" stop="41997"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSILRRMTNFSGAFSITEASSPTEAGPARTGTGTAGRDDFIFRLSSSATACHGFWHDVILVLPSVLFVLYLGFHARSNIKKLSHRRSFVMIGYYGLLWFAVLLNLCWCFLQAWQCTPGKQVAWNLLSLFATSAMLFLEISIVAFLLKENYASCLETLSRTFMVSGLFVGVDLLLKAIYIFGLGIPLFLDMEIADRGKWRVWSTNKLLLTAAYGYILFVHFSKWRDKLPPRPAFYNYVIVMFVTSAVMLFACGLAGIRGGFGLWLYNLTVVCYHSLYLPFLYVTFLADFFKEEDWLLDSAYYSEMKDAGFFDADGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42779" e_stop="42770"/>
            <exon e_start="42685" e_stop="42526"/>
            <exon e_start="42426" e_stop="42324"/>
            <exon e_start="42229" e_stop="42148"/>
            <exon e_start="42074" e_stop="41780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.742" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.438" e_score="0.994"/>
          <exon-intron don_prob="0.088" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42779" e_stop="42770" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.742" acc_prob="0.937">
            <gDNA_intron_boundary i_start="42769" i_stop="42686" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="42685" e_stop="42526" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.438">
            <gDNA_intron_boundary i_start="42525" i_stop="42427" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42426" e_stop="42324" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.088" acc_prob="0.695">
            <gDNA_intron_boundary i_start="42323" i_stop="42230" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42229" e_stop="42148" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42147" i_stop="42075" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42074" e_stop="41780" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42779" stop="42770"/>
              <exon start="42685" stop="42526"/>
              <exon start="42426" stop="42324"/>
              <exon start="42229" stop="42148"/>
              <exon start="42074" stop="41900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427510" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42775" stop="42770"/>
              <exon start="42685" stop="42526"/>
              <exon start="42426" stop="42324"/>
              <exon start="42229" stop="42148"/>
              <exon start="42074" stop="41780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42589" stop="42526"/>
              <exon start="42426" stop="42324"/>
              <exon start="42229" stop="42148"/>
              <exon start="42074" stop="41798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275577" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATAAAGG : GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC : CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG : GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG : GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGAATAGACCATGCTGGCTAA</gDNA_template>
            <first_frame> Q  I  K   : G  N  L  Y  I  W  T  W  Y  S  T  F  P  *  H  G  N  S  *  *  G  E  V  A  C  L  E  H  Q  Q  A  S  S  Y  C  S  L  W  L  H  I  V  C  A  F  L  K  V  E  R  *  A  A  S :   T  S  S  L  L  Q  L  R  H  R  H  V  C  D  K  C  C  N  V  I  C  L  W  A  C  R  H  *  G  W  L  W  T  L  :  V  V  *  F  D  C  S  L  L  S  L  A  L  S  S  I  S  L  R  D  V  P  G  *  F  F  Q   : G  G  R  L  A  S  G  Q  R  I  L  L  R  D  E  R  C  R  V  F  *  C  R  R  G  V  S  L  *  N  C  R  Q  I  S  S  P  N  M  *  L  *  I  L  T  G  W  Y  Y  E  K  Q  N  *  *  L  F  K  *  L  H  C  L  A  Y  L  L  V  E  I  I  D  P  L  G  K  S  I  R  K  N  N  *  N  V  I  V  K  I  C  I  F  E  *  T  M  L  A   </first_frame>
            <second_frame>  K  *  R  :  A  I  Y  I  F  G  L  G  I  P  L  F  L  D  M  E  I  A  D  R  G  K  W  R  V  W  S  T  N  K  L  L  L  T  A  A  Y  G  Y  I  L  F  V  H  F  S  K  W  R  D  K  L  P   : P  R  P  A  F  Y  N  Y  V  I  V  M  F  V  T  S  A  V  M  L  F  A  C  G  L  A  G  I  R  G  G  F  G  L  W :   L  Y  N  L  T  V  V  C  Y  H  S  L  Y  L  P  F  L  Y  V  T  F  L  A  D  F  F  K  :  E  E  D  W  L  L  D  S  A  Y  Y  S  E  M  K  D  A  G  F  F  D  A  D  G  E  *  A  C  K  T  V  D  K  *  A  V  P  T  C  N  C  K  Y  *  L  A  G  I  M  R  N  K  T  N  S  Y  S  S  D  C  I  V  *  L  I  C  W  L  R  S  L  I  H  L  A  K  V  *  E  R  T  T  K  M  L  L  *  R  Y  V  F  L  N  R  P  C  W  L  </second_frame>
            <third_frame>   N  K  G :   Q  F  I  Y  L  D  L  V  F  H  F  S  L  T  W  K  *  L  I  G  G  S  G  V  S  G  A  P  T  S  F  F  L  L  Q  L  M  A  T  Y  C  L  C  I  S  Q  S  G  E  I  S  C  L  :  H  V  Q  P  F  T  I  T  S  S  S  C  L  *  Q  V  L  *  C  Y  L  P  V  G  L  Q  A  L  G  V  A  L  D  F   : G  C  I  I  *  L  *  F  V  I  T  R  F  I  F  H  F  F  T  *  R  S  W  L  I  F  S  R :   R  K  I  G  F  W  T  A  H  I  T  Q  R  *  K  M  Q  G  F  L  M  Q  T  G  S  K  L  V  K  L  *  T  N  K  Q  S  Q  H  V  I  V  N  I  D  W  L  V  L  *  E  T  K  L  I  V  I  Q  V  I  A  L  S  S  L  F  A  G  *  D  H  *  S  T  W  Q  K  Y  K  K  E  Q  L  K  C  Y  C  K  D  M  Y  F  *  I  D  H  A  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42772" stop="42770"/>
                    <exon start="42685" stop="42526"/>
                    <exon start="42426" stop="42324"/>
                    <exon start="42229" stop="42148"/>
                    <exon start="42074" stop="41997"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAIYIFGLGIPLFLDMEIADRGKWRVWSTNKLLLTAAYGYILFVHFSKWRDKLPPRPAFYNYVIVMFVTSAVMLFACGLAGIRGGFGLWLYNLTVVCYHSLYLPFLYVTFLADFFKEEDWLLDSAYYSEMKDAGFFDADGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="61834" PGL_stop="63529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61834" e_stop="61873"/>
            <exon e_start="62075" e_stop="63529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.996" e_score="0.950"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="61834" e_stop="61873" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61874" i_stop="62074" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="62075" e_stop="63529" e_length="1455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61834" stop="61873"/>
              <exon start="62075" stop="62919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62474" stop="63111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62811" stop="63529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62811" stop="63293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTGACTCACATTCACCTAATAAAGCTGCGGAATCTAG : TCCAAACATGCTACAGCTTATTCAGAAGGTGGACCAGTCGAGAGAGTGTGGTTCCGGGGCAGAGTTAGGTCATTCTGAAAAAAAAGCATCATCTAGGATGCCTGAAGCAGCAGAGAATTCTGATGAGTCTGTTGGTCATCACCTGAGGAGTCAGTCTGCTTTCTCTCAAGGCTATGGTCTACAACTTGGCCCTCCATCCCGACGTGCATCAGTCCGAACCCATTCTTTGACATCTCAGCGCCCGATCCAAGCTTTTAGCTCTTCACATTATAGTCATGCTACTGTTGACACTGGTGAGAAGAATCAAGGACCAATGCACCCCCCTCATCAGGCTCCATCCGTACTTTCACCTTCTGATCCATCCCAGGAAGGATTGAAGAATATAGGATTTGGTATTGCAGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTGAAGCCCAACCTTTCAAATCAGAACTATTCCCTATTAAACCAAGTGCAGGCTATCAAACATGTGGAGGTCGATCCAAGCAATAGGGACTTCAAGAGAATGAAAGTAGCAGACAGCAGTACAGGTGCTCCACAATTTTCTTCTGGGGACACTGAAATGTTGGGAGTCTCTGTGCCAGAGGATTTGCAAAGAAGCATTTCATCTCAACAAGGGAGAAAAATGTCTCCTCATGATGTACT</gDNA_template>
            <first_frame> L  L  T  H  I  H  L  I  K  L  R  N  L   : V  Q  T  C  Y  S  L  F  R  R  W  T  S  R  E  S  V  V  P  G  Q  S  *  V  I  L  K  K  K  H  H  L  G  C  L  K  Q  Q  R  I  L  M  S  L  L  V  I  T  *  G  V  S  L  L  S  L  K  A  M  V  Y  N  L  A  L  H  P  D  V  H  Q  S  E  P  I  L  *  H  L  S  A  R  S  K  L  L  A  L  H  I  I  V  M  L  L  L  T  L  V  R  R  I  K  D  Q  C  T  P  L  I  R  L  H  P  Y  F  H  L  L  I  H  P  R  K  D  *  R  I  *  D  L  V  L  Q  E  V  P  I  M  *  L  L  C  M  Q  C  P  E  T  F  L  Q  R  L  I  L  I  L  V  F  P  I  G  E  V  S  L  K  F  Q  M  W  L  G  L  L  H  N  S  Q  Q  I  N  P  *  V  Y  P  L  I  S  M  L  P  L  I  Q  R  K  V  T  L  A  E  D  L  Q  M  V  S  L  W  R  L  P  C  W  L  G  L  T  S  C  K  I  S  L  F  S  P  Q  T  S  L  N  *  V  T  P  I  V  Q  W  K  V  S  L  P  I  K  L  H  P  K  S  Q  Y  Q  F  L  R  R  *  C  L  A  S  V  S  R  V  R  I  Q  K  C  H  P  V  Y  G  V  L  F  H  H  L  S  K  L  L  A  L  S  I  A  R  I  L  L  I  F  S  N  H  I  K  *  I  L  W  S  R  H  Y  L  L  L  G  G  K  V  I  N  T  *  I  E  V  V  L  H  P  R  L  V  L  A  Q  *  I  P  W  F  L  L  K  G  K  N  S  D  Q  R  K  V  I  L  S  K  Y  Q  *  Q  M  L  T  T  S  R  R  *  M  I  H  R  V  E  N  L  L  S  S  I  S  W  E  D  L  L  Q  M  L  H  L  C  R  E  I  L  K  P  L  A  E  L  *  S  P  T  F  Q  I  R  T  I  P  Y  *  T  K  C  R  L  S  N  M  W  R  S  I  Q  A  I  G  T  S  R  E  *  K  *  Q  T  A  V  Q  V  L  H  N  F  L  L  G  T  L  K  C  W  E  S  L  C  Q  R  I  C  K  E  A  F  H  L  N  K  G  E  K  C  L  L  M  M  Y  </first_frame>
            <second_frame>  S  *  L  T  F  T  *  *  S  C  G  I  *  :  S  K  H  A  T  A  Y  S  E  G  G  P  V  E  R  V  W  F  R  G  R  V  R  S  F  *  K  K  S  I  I  *  D  A  *  S  S  R  E  F  *  *  V  C  W  S  S  P  E  E  S  V  C  F  L  S  R  L  W  S  T  T  W  P  S  I  P  T  C  I  S  P  N  P  F  F  D  I  S  A  P  D  P  S  F  *  L  F  T  L  *  S  C  Y  C  *  H  W  *  E  E  S  R  T  N  A  P  P  S  S  G  S  I  R  T  F  T  F  *  S  I  P  G  R  I  E  E  Y  R  I  W  Y  C  R  K  Y  Q  *  C  N  F  Y  V  C  N  A  R  K  P  F  S  S  V  *  F  S  F  W  F  S  L  *  G  R  S  A  *  N  S  K  C  G  *  D  Y  C  T  T  P  N  K  S  I  L  E  C  I  L  *  *  A  C  F  L  S  Y  R  E  R  *  L  L  Q  R  I  C  K  W  S  V  C  G  G  F  L  A  G  W  G  *  Q  V  A  R  *  A  Y  S  L  R  R  Q  V  S  I  E  *  H  Q  S  Y  S  G  K  Y  L  Y  Q  S  S  Y  I  P  R  A  S  I  S  F  S  G  V  S  V  W  H  R  S  A  G  Y  V  F  K  N  V  I  R  Y  M  G  Y  F  S  T  T  S  A  S  F  W  L  S  V  *  Q  G  F  F  S  Y  F  P  I  T  S  N  E  Y  C  G  V  V  I  I  C  S  W  E  A  K  *  S  I  L  E  *  R  *  F  C  I  P  D  W  Y  *  L  S  E  F  P  G  F  F  *  R  G  R  T  A  T  K  G  K  S  F  S  A  N  I  S  D  K  C  *  P  H  P  E  D  E  *  F  T  G  *  R  T  F  Y  Q  V  Y  L  G  R  I  C  C  K  C  C  I  Y  A  E  R  Y  *  S  L  W  P  N  F  E  A  Q  P  F  K  S  E  L  F  P  I  K  P  S  A  G  Y  Q  T  C  G  G  R  S  K  Q  *  G  L  Q  E  N  E  S  S  R  Q  Q  Y  R  C  S  T  I  F  F  W  G  H  *  N  V  G  S  L  C  A  R  G  F  A  K  K  H  F  I  S  T  R  E  K  N  V  S  S  *  C  T </second_frame>
            <third_frame>   L  D  S  H  S  P  N  K  A  A  E  S  S :   P  N  M  L  Q  L  I  Q  K  V  D  Q  S  R  E  C  G  S  G  A  E  L  G  H  S  E  K  K  A  S  S  R  M  P  E  A  A  E  N  S  D  E  S  V  G  H  H  L  R  S  Q  S  A  F  S  Q  G  Y  G  L  Q  L  G  P  P  S  R  R  A  S  V  R  T  H  S  L  T  S  Q  R  P  I  Q  A  F  S  S  S  H  Y  S  H  A  T  V  D  T  G  E  K  N  Q  G  P  M  H  P  P  H  Q  A  P  S  V  L  S  P  S  D  P  S  Q  E  G  L  K  N  I  G  F  G  I  A  G  S  T  N  N  V  T  S  M  Y  A  M  P  G  N  L  S  P  A  F  D  S  H  S  G  F  P  Y  R  G  G  Q  L  K  I  P  N  V  A  R  T  T  A  Q  L  P  T  N  Q  S  L  S  V  S  F  D  K  H  A  S  S  H  T  E  K  G  D  S  C  R  G  S  A  N  G  Q  S  V  E  A  S  L  L  A  G  A  D  K  L  Q  D  K  P  I  L  S  A  D  K  S  Q  L  S  N  T  N  R  T  V  E  S  I  F  T  N  Q  V  T  S  Q  E  P  V  S  V  S  Q  A  L  V  S  G  I  G  Q  Q  G  T  Y  S  K  M  S  S  G  I  W  G  T  F  P  P  P  Q  Q  A  F  G  S  Q  Y  S  K  D  S  S  H  I  F  Q  S  H  Q  M  N  I  V  E  S  S  L  S  A  P  G  R  Q  S  D  Q  Y  L  N  R  G  S  F  A  S  Q  I  G  T  S  S  V  N  S  L  V  S  S  E  G  E  E  Q  R  P  K  E  S  H  S  Q  Q  I  S  V  T  N  V  D  H  I  Q  K  M  N  D  S  Q  G  R  E  P  F  I  K  Y  I  L  G  G  S  A  A  N  A  A  S  M  Q  R  D  I  E  A  F  G  R  T  L  K  P  N  L  S  N  Q  N  Y  S  L  L  N  Q  V  Q  A  I  K  H  V  E  V  D  P  S  N  R  D  F  K  R  M  K  V  A  D  S  S  T  G  A  P  Q  F  S  S  G  D  T  E  M  L  G  V  S  V  P  E  D  L  Q  R  S  I  S  S  Q  Q  G  R  K  M  S  P  H  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61836" stop="61873"/>
                    <exon start="62075" stop="63527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1491</number_coding_nucleotides>
                  <number_encoded_amino_acids>497</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDSHSPNKAAESSPNMLQLIQKVDQSRECGSGAELGHSEKKASSRMPEAAENSDESVGHHLRSQSAFSQGYGLQLGPPSRRASVRTHSLTSQRPIQAFSSSHYSHATVDTGEKNQGPMHPPHQAPSVLSPSDPSQEGLKNIGFGIAGSTNNVTSMYAMPGNLSPAFDSHSGFPYRGGQLKIPNVARTTAQLPTNQSLSVSFDKHASSHTEKGDSCRGSANGQSVEASLLAGADKLQDKPILSADKSQLSNTNRTVESIFTNQVTSQEPVSVSQALVSGIGQQGTYSKMSSGIWGTFPPPQQAFGSQYSKDSSHIFQSHQMNIVESSLSAPGRQSDQYLNRGSFASQIGTSSVNSLVSSEGEEQRPKESHSQQISVTNVDHIQKMNDSQGREPFIKYILGGSAANAASMQRDIEAFGRTLKPNLSNQNYSLLNQVQAIKHVEVDPSNRDFKRMKVADSSTGAPQFSSGDTEMLGVSVPEDLQRSISSQQGRKMSPHDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="64166" PGL_stop="68085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64166" e_stop="64194"/>
            <exon e_start="64275" e_stop="64522"/>
            <exon e_start="64610" e_stop="64717"/>
            <exon e_start="67529" e_stop="68085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.979" acc_prob="0.992" e_score="0.992"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="64166" e_stop="64194" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64195" i_stop="64274" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="64275" e_stop="64522" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.992">
            <gDNA_intron_boundary i_start="64523" i_stop="64609" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="64610" e_stop="64717" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64718" i_stop="67528" i_length="2811"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="67529" e_stop="68085" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64166" stop="64194"/>
              <exon start="64275" stop="64522"/>
              <exon start="64610" stop="64717"/>
              <exon start="67529" stop="67752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64287" stop="64522"/>
              <exon start="64610" stop="64717"/>
              <exon start="67529" stop="67572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64490" stop="64522"/>
              <exon start="64610" stop="64717"/>
              <exon start="67529" stop="68085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGAGCTGCTAATAGGCTTACTGAAAAG : GTTATAGAAGGCATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGCAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACT : GCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAG : ACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATCAATTACCTCAACTTCCCGTAGACATTTTTGTCCTAGTCATGTACTAGTTCTAGCAAGAGCAAAATAGAACCACACAATCAGTATTGCTGAACATACTCAATTGTCATCTCAGATGGAACGTAGCTGTCCAATCTTTTGCATGTAGGCCATTTATGTCATTATCAAGAAAATATACATGTACATCTCTTCAAACTTAGTGAGGGGAGGTGAAACTAGGGTGCCCCATCATTTTTTGCCAGAAGTGGGGAGAGAATACATACTTCTGTGCTTCTAAGCTGTTGACATACAGTTGGCCATCATTATGTATAAGAGATGCCCAGGCGCTCATAATTG</gDNA_template>
            <first_frame> L  E  L  L  I  G  L  L  K  R :   L  *  K  A  L  V  L  M  R  K  G  P  Q  G  L  K  L  K  E  G  L  Y  *  P  L  S  L  C  S  N  Y  S  P  L  P  L  Q  Q  F  F  L  Q  K  L  I  Q  S  M  R  V  W  V  T  P  S  L  D  R  H  W  G  M  H  A  A  C  F  L  A  Q  M  L  I  V  I  C  L  V  M  T  K  N   : C  F  P  K  G  A  L  L  L  R  G  L  I  N  M  I  L  P  K  H  *  K  S  Y  R  E  E  R  G  D  W  K  V  I  L  *   : D  W  T  R  E  H  R  Y  *  M  *  Q  W  M  G  K  T  K  R  S  S  A  L  L  I  G  M  L  G  F  L  V  G  R  N  M  M  V  F  L  R  D  T  S  Q  R  F  Q  Y  Q  K  I  C  L  V  G  C  T  V  F  L  Y  N  H  K  S  I  E  S  F  L  C  S  V  I  N  Y  L  N  F  P  *  T  F  L  S  *  S  C  T  S  S  S  K  S  K  I  E  P  H  N  Q  Y  C  *  T  Y  S  I  V  I  S  D  G  T  *  L  S  N  L  L  H  V  G  H  L  C  H  Y  Q  E  N  I  H  V  H  L  F  K  L  S  E  G  R  *  N  *  G  A  P  S  F  F  A  R  S  G  E  R  I  H  T  S  V  L  L  S  C  *  H  T  V  G  H  H  Y  V  *  E  M  P  R  R  S  *  L </first_frame>
            <second_frame>  *  S  C  *  *  A  Y  *  K   : G  Y  R  R  H  W  F  *  *  G  R  G  P  R  G  *  S  *  K  K  G  Y  I  D  H  S  A  Y  A  A  T  T  P  L  S  P  C  S  N  S  F  C  R  S  *  F  R  V  *  E  C  G  L  L  H  L  *  I  V  I  G  G  C  M  Q  H  A  F  L  L  K  C  *  S  *  Y  A  L  *  *  Q  R  T  :  A  S  Q  R  V  H  Y  F  S  E  D  *  *  T  *  F  C  Q  N  I  R  R  V  T  G  K  S  E  E  I  G  K  *  F  Y  E  :  T  G  Q  E  S  I  G  I  R  C  D  S  G  W  A  R  P  R  E  V  R  R  Y  *  S  V  C  *  V  S  W  S  G  A  I  *  W  Y  S  S  E  I  R  H  S  A  S  N  T  K  R  S  A  *  W  G  A  L  S  F  S  I  I  T  N  Q  L  N  L  F  C  A  L  S  S  I  T  S  T  S  R  R  H  F  C  P  S  H  V  L  V  L  A  R  A  K  *  N  H  T  I  S  I  A  E  H  T  Q  L  S  S  Q  M  E  R  S  C  P  I  F  C  M  *  A  I  Y  V  I  I  K  K  I  Y  M  Y  I  S  S  N  L  V  R  G  G  E  T  R  V  P  H  H  F  L  P  E  V  G  R  E  Y  I  L  L  C  F  *  A  V  D  I  Q  L  A  I  I  M  Y  K  R  C  P  G  A  H  N   </second_frame>
            <third_frame>   R  A  A  N  R  L  T  E  K  :  V  I  E  G  I  G  F  N  E  E  G  A  P  G  V  K  A  K  R  R  A  I  L  T  T  Q  L  M  Q  Q  L  L  P  S  P  P  A  A  I  L  S  A  E  A  N  S  E  Y  E  S  V  G  Y  S  I  S  R  S  S  L  G  D  A  C  S  M  L  S  C  S  N  A  D  R  N  M  P  C  D  D  K  E  L :   L  P  K  G  C  I  T  S  Q  R  I  N  K  H  D  F  A  K  T  L  E  E  L  Q  G  R  A  R  R  L  E  S  D  F  M  R :   L  D  K  R  A  S  V  L  D  V  T  V  D  G  Q  D  Q  E  K  F  G  V  I  N  R  Y  A  R  F  L  G  R  A  Q  Y  D  G  I  P  Q  R  Y  V  T  A  L  P  I  P  K  D  L  P  S  G  V  H  C  L  S  L  *  S  Q  I  N  *  I  F  S  V  L  C  H  Q  L  P  Q  L  P  V  D  I  F  V  L  V  M  Y  *  F  *  Q  E  Q  N  R  T  T  Q  S  V  L  L  N  I  L  N  C  H  L  R  W  N  V  A  V  Q  S  F  A  C  R  P  F  M  S  L  S  R  K  Y  T  C  T  S  L  Q  T  *  *  G  E  V  K  L  G  C  P  I  I  F  C  Q  K  W  G  E  N  T  Y  F  C  A  S  K  L  L  T  Y  S  W  P  S  L  C  I  R  D  A  Q  A  L  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64168" stop="64194"/>
                    <exon start="64275" stop="64522"/>
                    <exon start="64610" stop="64717"/>
                    <exon start="67529" stop="67715"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAANRLTEKVIEGIGFNEEGAPGVKAKRRAILTTQLMQQLLPSPPAAILSAEANSEYESVGYSISRSSLGDACSMLSCSNADRNMPCDDKELLPKGCITSQRINKHDFAKTLEELQGRARRLESDFMRLDKRASVLDVTVDGQDQEKFGVINRYARFLGRAQYDGIPQRYVTALPIPKDLPSGVHCLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="76446" PGL_stop="79239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76446" e_stop="76629"/>
            <exon e_start="76957" e_stop="77057"/>
            <exon e_start="78756" e_stop="79115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76446" e_stop="76629" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.779">
            <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76957" e_stop="77057" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78756" e_stop="79115" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76446" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596003" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76455" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76474" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76474" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76475" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371591" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76475" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76475" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76477" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296287" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76477" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76477" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76477" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="78831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76477" stop="76629"/>
              <exon start="76957" stop="77030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76478" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76478" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76479" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76479" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76479" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76481" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76481" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76482" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76482" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="78926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76484" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76484" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76484" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76484" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76485" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="78926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76491" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76491" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76503" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76535" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76537" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76548" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76564" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285461" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76567" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76961" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76966" stop="77057"/>
              <exon start="78756" stop="79089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76968" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76974" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77006" stop="77057"/>
              <exon start="78756" stop="79082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78756" stop="79074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78757" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78757" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78760" stop="79048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCGGATCCAAATTCATTTTCGGAGCAGAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA : TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT : GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</gDNA_template>
            <first_frame> V  R  I  Q  I  H  F  R  S  R  N  Y  S  S  H  V  V  T  S  E  R  S  T  A  T  V  D  G  K  A  V  Q  A  F  A  G  R  S  T  R  S  S  Y  R  L  L  R  L  H  S  R  H  L  R  R  L  W  C  H  V  *   : I  Q  D  L  L  V  A  C  Y  Y  I  Q  C  S  I  P  C  *  H  E  E  Y  G  K  *  S  *  A  D  L  N  G  H  D  :  V  W  Y  Y  G  S  H  D  K  L  L  G  C  W  S  P  G  K  Q  E  N  L  I  E  L  F  Q  A  Q  T  H  L  *  E  H  C  C  Q  T  C  G  C  C  P  E  I  F  A  L  L  *  C  F  *  A  K  *  S  *  R  L  G  F  W  *  F  E  L  F  L  *  G  Y  S  V  L  S  C  N  C  S  *  Q  K  L  D  N  Y  Y  C  G  D  I  N  V  L  F  V  N  S  G  F  S  I  L  P  T  S  T  I  F  Q  F  M  S  C  Y  L  V  L </first_frame>
            <second_frame>  F  G  S  K  F  I  F  G  A  E  T  T  A  A  M  S  S  P  A  N  D  P  R  Q  P  S  T  A  K  P  Y  K  P  S  P  V  A  P  Q  D  L  P  I  D  Y  S  G  F  I  A  V  I  C  G  V  F  G  A  M  F  R  :  Y  K  I  C  S  W  L  A  I  I  F  S  A  Q  S  L  A  N  M  R  N  M  E  N  D  L  K  Q  I  S  M  A  M  M :   F  G  I  M  G  L  M  T  N  Y  L  G  V  G  P  R  G  S  K  K  I  *  S  N  C  F  R  H  K  L  I  Y  K  N  I  A  V  K  H  V  D  V  V  L  K  Y  L  H  C  Y  D  V  S  E  L  N  E  V  K  D  *  V  F  G  S  L  S  S  F  Y  R  A  I  Q  F  *  V  V  I  A  L  S  K  N  *  T  I  I  I  V  V  I  L  T  F  C  S  *  I  Q  V  S  L  S  F  Q  L  P  L  Y  F  N  L  C  L  V  I  *  S   </second_frame>
            <third_frame>   S  D  P  N  S  F  S  E  Q  K  L  Q  Q  P  C  R  H  Q  R  T  I  H  G  N  R  R  R  Q  S  R  T  S  L  R  R  S  L  H  K  I  F  L  *  I  T  P  A  S  *  P  S  S  A  A  S  L  V  P  C  L  D :   T  R  F  A  R  G  L  L  L  Y  S  V  L  N  P  L  L  T  *  G  I  W  K  M  I  L  S  R  S  Q  W  P  *   : C  L  V  L  W  V  S  *  Q  T  T  W  V  L  V  P  G  E  A  R  K  F  D  R  I  V  S  G  T  N  S  F  I  R  T  L  L  S  N  M  W  M  L  S  *  N  I  C  T  V  M  M  F  L  S  *  M  K  L  K  I  R  F  L  V  V  *  A  L  F  I  G  L  F  S  S  K  L  *  L  L  L  A  K  T  R  Q  L  L  L  W  *  Y  *  R  S  V  R  E  F  R  F  L  Y  P  S  N  F  H  Y  I  S  I  Y  V  L  L  F  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76447" stop="76629"/>
                    <exon start="76957" stop="77057"/>
                    <exon start="78756" stop="78822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGSKFIFGAETTAAMSSPANDPRQPSTAKPYKPSPVAPQDLPIDYSGFIAVICGVFGAMFRYKICSWLAIIFSAQSLANMRNMENDLKQISMAMMFGIMGLMTNYLGVGPRGSKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76474" e_stop="76629"/>
            <exon e_start="76957" e_stop="77057"/>
            <exon e_start="78756" e_stop="79056"/>
            <exon e_start="79203" e_stop="79239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.622"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76474" e_stop="76629" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.779">
            <gDNA_intron_boundary i_start="76630" i_stop="76956" i_length="327"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76957" e_stop="77057" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78756" e_stop="79056" e_length="301"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79057" i_stop="79202" i_length="146"/>
          </intron>
          <exon e_serial="4" e_score="0.622">
            <gDNA_exon_boundary e_start="79203" e_stop="79239" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76474" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76474" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76475" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76475" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76477" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="78831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76477" stop="76629"/>
              <exon start="76957" stop="77030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76478" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76479" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76479" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76479" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76481" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76482" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76482" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="78926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76485" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="78926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76491" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76535" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76537" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76564" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285461" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76567" stop="76629"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79056"/>
              <exon start="79203" stop="79239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76961" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76968" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76974" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78757" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78757" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78760" stop="79048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA : TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT : GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG : AAAGACTAAGAAAAGGCAAAGAGAACTTTAGAAAAAA</gDNA_template>
            <first_frame> E  T  T  A  A  M  S  S  P  A  N  D  P  R  Q  P  S  T  A  K  P  Y  K  P  S  P  V  A  P  Q  D  L  P  I  D  Y  S  G  F  I  A  V  I  C  G  V  F  G  A  M  F  R  :  Y  K  I  C  S  W  L  A  I  I  F  S  A  Q  S  L  A  N  M  R  N  M  E  N  D  L  K  Q  I  S  M  A  M  M :   F  G  I  M  G  L  M  T  N  Y  L  G  V  G  P  R  G  S  K  K  I  *  S  N  C  F  R  H  K  L  I  Y  K  N  I  A  V  K  H  V  D  V  V  L  K  Y  L  H  C  Y  D  V  S  E  L  N  E  V  K  D  *  V  F  G  S  L  S  S  F  Y  R  A  I  Q  F  *  V  V  I  A  L  S  K  N  *  T  I  I  I  V  V  I  L  T  F  C  S  *  I  Q  :  K  D  *  E  K  A  K  R  T  L  E  K  </first_frame>
            <second_frame>  K  L  Q  Q  P  C  R  H  Q  R  T  I  H  G  N  R  R  R  Q  S  R  T  S  L  R  R  S  L  H  K  I  F  L  *  I  T  P  A  S  *  P  S  S  A  A  S  L  V  P  C  L  D :   T  R  F  A  R  G  L  L  L  Y  S  V  L  N  P  L  L  T  *  G  I  W  K  M  I  L  S  R  S  Q  W  P  *   : C  L  V  L  W  V  S  *  Q  T  T  W  V  L  V  P  G  E  A  R  K  F  D  R  I  V  S  G  T  N  S  F  I  R  T  L  L  S  N  M  W  M  L  S  *  N  I  C  T  V  M  M  F  L  S  *  M  K  L  K  I  R  F  L  V  V  *  A  L  F  I  G  L  F  S  S  K  L  *  L  L  L  A  K  T  R  Q  L  L  L  W  *  Y  *  R  S  V  R  E  F  R :   K  T  K  K  R  Q  R  E  L  *  K  K </second_frame>
            <third_frame>   N  Y  S  S  H  V  V  T  S  E  R  S  T  A  T  V  D  G  K  A  V  Q  A  F  A  G  R  S  T  R  S  S  Y  R  L  L  R  L  H  S  R  H  L  R  R  L  W  C  H  V  *   : I  Q  D  L  L  V  A  C  Y  Y  I  Q  C  S  I  P  C  *  H  E  E  Y  G  K  *  S  *  A  D  L  N  G  H  D  :  V  W  Y  Y  G  S  H  D  K  L  L  G  C  W  S  P  G  K  Q  E  N  L  I  E  L  F  Q  A  Q  T  H  L  *  E  H  C  C  Q  T  C  G  C  C  P  E  I  F  A  L  L  *  C  F  *  A  K  *  S  *  R  L  G  F  W  *  F  E  L  F  L  *  G  Y  S  V  L  S  C  N  C  S  *  Q  K  L  D  N  Y  Y  C  G  D  I  N  V  L  F  V  N  S   : E  R  L  R  K  G  K  E  N  F  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76474" stop="76629"/>
                    <exon start="76957" stop="77057"/>
                    <exon start="78756" stop="78822"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETTAAMSSPANDPRQPSTAKPYKPSPVAPQDLPIDYSGFIAVICGVFGAMFRYKICSWLAIIFSAQSLANMRNMENDLKQISMAMMFGIMGLMTNYLGVGPRGSKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76588" e_stop="76622"/>
            <exon e_start="76755" e_stop="76763"/>
            <exon e_start="76957" e_stop="77057"/>
            <exon e_start="78756" e_stop="79115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.456" acc_prob="0.324" e_score="0.914"/>
          <exon-intron don_prob="0.900" acc_prob="0.779" e_score="0.333"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="76588" e_stop="76622" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.456" acc_prob="0.324">
            <gDNA_intron_boundary i_start="76623" i_stop="76754" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="0.333">
            <gDNA_exon_boundary e_start="76755" e_stop="76763" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.779">
            <gDNA_intron_boundary i_start="76764" i_stop="76956" i_length="193"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76957" e_stop="77057" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77058" i_stop="78755" i_length="1698"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="78756" e_stop="79115" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76588" stop="76622"/>
              <exon start="76755" stop="76763"/>
              <exon start="76957" stop="77057"/>
              <exon start="78756" stop="79115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76961" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76966" stop="77057"/>
              <exon start="78756" stop="79089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76968" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76974" stop="77057"/>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77006" stop="77057"/>
              <exon start="78756" stop="79082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78756" stop="79074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78756" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78757" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78757" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78760" stop="79048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCAT : AACGAAGGA : TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT : GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</gDNA_template>
            <first_frame> F  I  A  V  I  C  G  V  F  G  A  I :   T  K  D :   T  R  F  A  R  G  L  L  L  Y  S  V  L  N  P  L  L  T  *  G  I  W  K  M  I  L  S  R  S  Q  W  P  *   : C  L  V  L  W  V  S  *  Q  T  T  W  V  L  V  P  G  E  A  R  K  F  D  R  I  V  S  G  T  N  S  F  I  R  T  L  L  S  N  M  W  M  L  S  *  N  I  C  T  V  M  M  F  L  S  *  M  K  L  K  I  R  F  L  V  V  *  A  L  F  I  G  L  F  S  S  K  L  *  L  L  L  A  K  T  R  Q  L  L  L  W  *  Y  *  R  S  V  R  E  F  R  F  L  Y  P  S  N  F  H  Y  I  S  I  Y  V  L  L  F  S  L  </first_frame>
            <second_frame>  S  *  P  S  S  A  A  S  L  V  P   : *  R  R   : I  Q  D  L  L  V  A  C  Y  Y  I  Q  C  S  I  P  C  *  H  E  E  Y  G  K  *  S  *  A  D  L  N  G  H  D  :  V  W  Y  Y  G  S  H  D  K  L  L  G  C  W  S  P  G  K  Q  E  N  L  I  E  L  F  Q  A  Q  T  H  L  *  E  H  C  C  Q  T  C  G  C  C  P  E  I  F  A  L  L  *  C  F  *  A  K  *  S  *  R  L  G  F  W  *  F  E  L  F  L  *  G  Y  S  V  L  S  C  N  C  S  *  Q  K  L  D  N  Y  Y  C  G  D  I  N  V  L  F  V  N  S  G  F  S  I  L  P  T  S  T  I  F  Q  F  M  S  C  Y  L  V  L </second_frame>
            <third_frame>   H  S  R  H  L  R  R  L  W  C  H  :  N  E  G  :  Y  K  I  C  S  W  L  A  I  I  F  S  A  Q  S  L  A  N  M  R  N  M  E  N  D  L  K  Q  I  S  M  A  M  M :   F  G  I  M  G  L  M  T  N  Y  L  G  V  G  P  R  G  S  K  K  I  *  S  N  C  F  R  H  K  L  I  Y  K  N  I  A  V  K  H  V  D  V  V  L  K  Y  L  H  C  Y  D  V  S  E  L  N  E  V  K  D  *  V  F  G  S  L  S  S  F  Y  R  A  I  Q  F  *  V  V  I  A  L  S  K  N  *  T  I  I  I  V  V  I  L  T  F  C  S  *  I  Q  V  S  L  S  F  Q  L  P  L  Y  F  N  L  C  L  V  I  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76590" stop="76622"/>
                    <exon start="76755" stop="76763"/>
                    <exon start="76957" stop="77057"/>
                    <exon start="78756" stop="78822"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSRHLRRLWCHNEGYKICSWLAIIFSAQSLANMRNMENDLKQISMAMMFGIMGLMTNYLGVGPRGSKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="79042" PGL_stop="78755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79042" e_stop="78755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="79042" e_stop="78755" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79042" stop="78755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAACGTTAATATCACCACAATAATAATTGTCTAGTTTTTGCTAAGAGCAATTACAACTTAGAACTGAATAGCCCTATAAAAAGAGCTCAAACTACCAAAAACCTAATCTTTAACTTCATTTAGCTCAGAAACATCATAACAGTGCAAATATTTCAGGACAACATCCACATGTTTGACAGCAATGTTCTTATAAATGAGTTTGTGCCTGAAACAATTCGATCAAATTTTCTTGCTTCCCCGGGGACCAACACCCAAGTAGTTTGTCATGAGACCCATAATACCAAACC</gDNA_template>
            <first_frame> R  T  L  I  S  P  Q  *  *  L  S  S  F  C  *  E  Q  L  Q  L  R  T  E  *  P  Y  K  K  S  S  N  Y  Q  K  P  N  L  *  L  H  L  A  Q  K  H  H  N  S  A  N  I  S  G  Q  H  P  H  V  *  Q  Q  C  S  Y  K  *  V  C  A  *  N  N  S  I  K  F  S  C  F  P  G  D  Q  H  P  S  S  L  S  *  D  P  *  Y  Q  T </first_frame>
            <second_frame>  E  R  *  Y  H  H  N  N  N  C  L  V  F  A  K  S  N  Y  N  L  E  L  N  S  P  I  K  R  A  Q  T  T  K  N  L  I  F  N  F  I  *  L  R  N  I  I  T  V  Q  I  F  Q  D  N  I  H  M  F  D  S  N  V  L  I  N  E  F  V  P  E  T  I  R  S  N  F  L  A  S  P  G  T  N  T  Q  V  V  C  H  E  T  H  N  T  K   </second_frame>
            <third_frame>   N  V  N  I  T  T  I  I  I  V  *  F  L  L  R  A  I  T  T  *  N  *  I  A  L  *  K  E  L  K  L  P  K  T  *  S  L  T  S  F  S  S  E  T  S  *  Q  C  K  Y  F  R  T  T  S  T  C  L  T  A  M  F  L  *  M  S  L  C  L  K  Q  F  D  Q  I  F  L  L  P  R  G  P  T  P  K  *  F  V  M  R  P  I  I  P  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0062L07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="83166" PGL_stop="80488"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83166" e_stop="82817"/>
            <exon e_start="82732" e_stop="82679"/>
            <exon e_start="82441" e_stop="82308"/>
            <exon e_start="82214" e_stop="81914"/>
            <exon e_start="81351" e_stop="81280"/>
            <exon e_start="80899" e_stop="80834"/>
            <exon e_start="80749" e_stop="80488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="83166" e_stop="82817" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="82816" i_stop="82733" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82732" e_stop="82679" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.919">
            <gDNA_intron_boundary i_start="82678" i_stop="82442" i_length="237"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82441" e_stop="82308" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.905" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82307" i_stop="82215" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82214" e_stop="81914" e_length="301"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="81913" i_stop="81352" i_length="562"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81351" e_stop="81280" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="81279" i_stop="80900" i_length="380"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80899" e_stop="80834" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="80833" i_stop="80750" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="80749" e_stop="80488" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83166" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="81914"/>
              <exon start="81351" stop="81280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83157" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="81919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83142" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="81920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83138" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83133" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="82154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83133" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="82202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83098" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="81914"/>
              <exon start="81351" stop="81280"/>
              <exon start="80899" stop="80871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83017" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="82186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82998" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="81914"/>
              <exon start="81351" stop="81280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82965" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="81914"/>
              <exon start="81351" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82935" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="82153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82922" stop="82817"/>
              <exon start="82732" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="81914"/>
              <exon start="81351" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82700" stop="82679"/>
              <exon start="82441" stop="82308"/>
              <exon start="82214" stop="81914"/>
              <exon start="81351" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82400" stop="82308"/>
              <exon start="82214" stop="81914"/>
              <exon start="81351" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82400" stop="82308"/>
              <exon start="82214" stop="81914"/>
              <exon start="81351" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82021" stop="81914"/>
              <exon start="81351" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81342" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81334" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81334" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81334" stop="81280"/>
              <exon start="80899" stop="80834"/>
              <exon start="80749" stop="80537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80881" stop="80834"/>
              <exon start="80749" stop="80494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTCTTCCATCTGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG : GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG : GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA : GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAG : GTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG : GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG : CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAACCTCTA</gDNA_template>
            <first_frame> N  S  S  I  C  L  C  Q  L  K  S  H  R  P  P  S  P  S  C  V  S  P  P  S  L  F  S  N  F  G  F  S  P  A  K  S  H  Q  F  Y  R  P  I  L  F  Y  K  T  P  H  Q  A  P  N  F  P  H  S  H  T  D  K  I  T  I  F  S  *  K  I  W  Q  W  L  L  S  V  S  L  V  L  R  F  L  S  S  L  L  L  H  H  P  I  *  A  R  P  I  S  P  R  A  P  F  P  S  D  P  V  L  H  C  S  L  V  F  R :   G  P  V  A  S  N  L  R  C  L  R  *  M  P  S  *  M  R :   L  L  L  T  S  R  T  I  Q  N  L  S  L  R  K  A  W  R  K  S  P  R  L  N  T  V  F  Q  M  L  H  P  F  K  H  S  C  L  R  Q  L  I  L  W   : S  L  W  I  Q  G  T  L  W  S  C  S  *  S  K  T  I  V  K  F  L  *  G  R  R  R  H  C  P  S  R  L  F  I  W  P  H  H  L  F  H  R  P  L  F  S  N  S  C  L  L  Q  V  P  L  L  L  Q  L  Q  Q  L  L  H  F  L  H  L  H  L  Q  S  L  N  P  H  I  L  Q  *  N  V  P  W  P  E  H  S  I  D  H  L  P  Q  G  Q  H  L  L  L  R :   *  V  T  R  S  R  K  G  K  W  S  A  L  L  R  L  *  N  *  *  M  K  L  R :   L  I  K  L  E  P  *  L  T  *  L  Q  R  M  V  S  P  L  V  W  T  R :   L  Y  L  S  L  N  H  D  R  K  K  *  S  W  C  A  T  *  V  D  E  A  E  *  N  S  K  V  I  E  S  K  S  V  L  S  S  R  H  I  C  S  E  D  W  F  T  I  T  L  V  E  I  Y  D  H  I  Y  S  L  Y  Y  S  F  S  L  C  C  S  *  I  L  E  L  Y  F  L  Y  K  V  V  T  *  *  *  P  L </first_frame>
            <second_frame>  T  L  P  S  A  S  A  S  L  N  R  I  V  P  L  L  P  R  V  Y  R  P  P  P  F  S  P  I  S  D  F  P  L  L  N  L  I  N  F  T  V  Q  F  S  S  T  K  P  P  I  K  L  P  I  S  L  I  A  I  Q  T  K  L  Q  Y  F  L  E  K  S  G  N  G  F  F  Q  C  P  L  S  *  D  F  C  P  L  C  C  F  I  I  Q  F  K  L  D  P  S  A  P  E  L  P  F  L  Q  I  R  S  C  I  A  P  S  Y  S   : G  V  Q  S  H  P  I  S  G  V  *  G  E  C  P  A  E  *   : G  C  Y  *  Q  V  E  Q  F  K  T  C  L  *  E  K  L  G  G  S  L  Q  D  *  I  Q  Y  S  R  C  F  I  H  S  S  I  H  V  S  G  S  *  S  C  G  :  A  C  G  F  K  G  H  C  G  A  A  A  K  A  K  Q  L  *  N  S  Y  K  E  E  G  G  I  A  P  A  A  C  L  Y  G  L  T  I  C  S  T  G  L  C  S  A  T  V  A  S  C  K  C  P  C  S  C  S  S  S  S  C  C  T  S  S  T  C  T  F  K  A  *  I  L  T  S  S  N  E  M  S  H  G  R  N  I  L  S  I  T  C  P  R  G  S  T  F  C  *   : G  R  *  Q  G  P  E  R  A  S  G  L  H  Y  *  G  Y  E  I  D  E  *  N  *   : G  *  S  S  W  N  H  S  *  H  S  C  R  G  W  *  A  R  *  C  G  H   : A  S  I  C  H  *  T  M  I  E  R  S  N  L  G  V  Q  H  R  W  M  K  Q  S  E  I  Q  K  L  *  R  A  N  L  S  *  A  Q  G  I  S  A  Q  K  I  G  S  L  L  L  L  L  K  S  M  I  I  F  I  A  C  I  T  H  F  P  Y  A  A  H  K  F  W  N  Y  I  F  F  I  K  L  *  L  D  D  N  L   </second_frame>
            <third_frame>   L  F  H  L  P  L  P  A  *  I  A  S  S  P  F  S  L  V  C  I  A  P  L  P  F  L  Q  F  R  I  F  P  C  *  I  S  S  I  L  P  S  N  S  L  L  Q  N  P  P  S  S  S  Q  F  P  S  *  P  Y  R  Q  N  Y  N  I  F  L  K  N  L  A  M  A  S  F  S  V  P  C  P  K  I  S  V  L  S  V  A  S  S  S  N  L  S  S  T  H  Q  P  Q  S  S  L  S  F  R  S  G  P  A  L  L  P  R  I  Q  :  G  S  S  R  I  Q  S  Q  V  F  K  V  N  A  Q  L  N  E  :  V  A  I  D  K  S  N  N  S  K  P  V  S  E  K  S  L  E  E  V  S  K  T  E  Y  S  I  P  D  A  S  S  I  Q  A  F  M  S  Q  A  A  D  L  V  E :   L  V  D  S  R  D  I  V  E  L  Q  L  K  Q  N  N  C  E  I  L  I  R  K  K  A  A  L  P  Q  P  P  V  Y  M  A  S  P  S  V  P  Q  A  F  V  Q  Q  Q  L  P  P  A  S  A  P  A  P  A  A  P  A  V  A  A  L  P  P  P  A  P  S  K  P  K  S  S  H  P  P  M  K  C  P  M  A  G  T  F  Y  R  S  P  A  P  G  A  A  P  F  V  K  :  V  G  D  K  V  Q  K  G  Q  V  V  C  I  I  E  A  M  K  L  M  N  E  I  E  :  A  D  Q  A  G  T  I  V  D  I  V  A  E  D  G  K  P  V  S  V  D  T  :  P  L  F  V  I  E  P  *  *  K  E  V  I  L  V  C  N  I  G  G  *  S  R  V  K  F  K  S  Y  R  E  Q  I  C  L  K  L  K  A  Y  L  L  R  R  L  V  H  Y  Y  S  C  *  N  L  *  S  Y  L  *  L  V  L  L  I  F  L  M  L  L  I  N  F  G  T  I  F  S  L  *  S  C  D  L  M  I  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82993" stop="82817"/>
                    <exon start="82732" stop="82679"/>
                    <exon start="82441" stop="82308"/>
                    <exon start="82214" stop="81914"/>
                    <exon start="81351" stop="81280"/>
                    <exon start="80899" stop="80834"/>
                    <exon start="80749" stop="80726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYRQNYNIFLKNLAMASFSVPCPKISVLSVASSSNLSSTHQPQSSLSFRSGPALLPRIQGSSRIQSQVFKVNAQLNEVAIDKSNNSKPVSEKSLEEVSKTEYSIPDASSIQAFMSQAADLVELVDSRDIVELQLKQNNCEILIRKKAALPQPPVYMASPSVPQAFVQQQLPPASAPAPAAPAVAALPPPAPSKPKSSHPPMKCPMAGTFYRSPAPGAAPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQAGTIVDIVAEDGKPVSVDTPLFVIEP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83166" stop="82963"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSICLCQLKSHRPPSPSCVSPPSLFSNFGFSPAKSHQFYRPILFYKTPHQAPNFPHSHTDKITIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="86514" PGL_stop="85978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86514" e_stop="85978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="86514" e_stop="85978" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86514" stop="85978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCAACAATGAAAGATGGCAGCTGCAACAACTCCGGCAATTATTTTCACCGTACTTTCAAATTCAGCCATCGACACAACGGCAGTGAACTATTCGATTCGTTCGAGCTTCAACAAGTCGTCAAACAGCTAAACCTTGCCCTCATTAAAGCATCTGCTGAATCATCTTCTCCGATTACATCTGCTGTTCTCAATTCTCCTTTTTACACCAAGTGCTTGGGAGGTTCTTACAAGCAAAATGCTAAATCTTCTAGAACCAGGAGAATTTCGTACTCACAAATTGGAGTTGAGAACACAGCAGATTGTAAAAGCACGGGGATTAATTGTATATTTCTACGATTTTGGAACATGGCAAAACAGGGGTTTTTCAGAGGTAAACCGAAACCAGGACAGCTAATTGCAGAAGCGAATTCAGAATTTTAAATTTGTGAGTGCGATTAACATCAATTGTGATCATTGCTACTTTATAATAATACTCAAATGTATATTGCCCCCGAACTGCTGTCTTCCTCGCACTTCAAGTTTCCAGAGTGAATAT</gDNA_template>
            <first_frame> C  Q  Q  *  K  M  A  A  A  T  T  P  A  I  I  F  T  V  L  S  N  S  A  I  D  T  T  A  V  N  Y  S  I  R  S  S  F  N  K  S  S  N  S  *  T  L  P  S  L  K  H  L  L  N  H  L  L  R  L  H  L  L  F  S  I  L  L  F  T  P  S  A  W  E  V  L  T  S  K  M  L  N  L  L  E  P  G  E  F  R  T  H  K  L  E  L  R  T  Q  Q  I  V  K  A  R  G  L  I  V  Y  F  Y  D  F  G  T  W  Q  N  R  G  F  S  E  V  N  R  N  Q  D  S  *  L  Q  K  R  I  Q  N  F  K  F  V  S  A  I  N  I  N  C  D  H  C  Y  F  I  I  I  L  K  C  I  L  P  P  N  C  C  L  P  R  T  S  S  F  Q  S  E  Y </first_frame>
            <second_frame>  V  N  N  E  R  W  Q  L  Q  Q  L  R  Q  L  F  S  P  Y  F  Q  I  Q  P  S  T  Q  R  Q  *  T  I  R  F  V  R  A  S  T  S  R  Q  T  A  K  P  C  P  H  *  S  I  C  *  I  I  F  S  D  Y  I  C  C  S  Q  F  S  F  L  H  Q  V  L  G  R  F  L  Q  A  K  C  *  I  F  *  N  Q  E  N  F  V  L  T  N  W  S  *  E  H  S  R  L  *  K  H  G  D  *  L  Y  I  S  T  I  L  E  H  G  K  T  G  V  F  Q  R  *  T  E  T  R  T  A  N  C  R  S  E  F  R  I  L  N  L  *  V  R  L  T  S  I  V  I  I  A  T  L  *  *  Y  S  N  V  Y  C  P  R  T  A  V  F  L  A  L  Q  V  S  R  V  N   </second_frame>
            <third_frame>   S  T  M  K  D  G  S  C  N  N  S  G  N  Y  F  H  R  T  F  K  F  S  H  R  H  N  G  S  E  L  F  D  S  F  E  L  Q  Q  V  V  K  Q  L  N  L  A  L  I  K  A  S  A  E  S  S  S  P  I  T  S  A  V  L  N  S  P  F  Y  T  K  C  L  G  G  S  Y  K  Q  N  A  K  S  S  R  T  R  R  I  S  Y  S  Q  I  G  V  E  N  T  A  D  C  K  S  T  G  I  N  C  I  F  L  R  F  W  N  M  A  K  Q  G  F  F  R  G  K  P  K  P  G  Q  L  I  A  E  A  N  S  E  F  *  I  C  E  C  D  *  H  Q  L  *  S  L  L  L  Y  N  N  T  Q  M  Y  I  A  P  E  L  L  S  S  S  H  F  K  F  P  E  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86512" stop="86093"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STMKDGSCNNSGNYFHRTFKFSHRHNGSELFDSFELQQVVKQLNLALIKASAESSSPITSAVLNSPFYTKCLGGSYKQNAKSSRTRRISYSQIGVENTADCKSTGINCIFLRFWNMAKQGFFRGKPKPGQLIAEANSEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="90579" PGL_stop="91326"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90579" e_stop="91326"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90579" e_stop="91326" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90579" stop="91302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90579" stop="91230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90643" stop="91326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCATGTTTTTTTTGTGTGTGAACTTCAG</gDNA_template>
            <first_frame> L  *  M  Q  W  S  Q  R  S  C  *  L  L  E  T  S  D  S  G  E  *  L  P  K  E  S  V  C  *  P  S  C  L  L  Y  V  Q  H  S  F  R  Q  E  D  C  Y  P  W  I  C  F  Q  E  R  Y  R  *  H  *  R  D  T  S  N  *  C  V  Q  R  P  I  G  R  Q  C  *  L  E  H  I  *  S  T  G  H  *  G  S  N  P  K  G  S  V  N  E  K  V  *  L  G  *  S  N  S  P  P  A  N  E  P  H  C  D  E  A  T  Q  C  S  M  G  C  L  C  S  H  K  R  R  P  R  P  L  S  F  D  R  V  G  *  V  Q  D  S  *  F  Q  E  D  L  *  *  H  A  K  T  C  I  C  V  *  W  K  E  H  C  *  *  T  E  A  Q  R  N  R  V  H  R  L  L  H  W  E  T  F  R  W  M  A  Q  G  Y  A  C  C  G  I  T  P  L  E  *  A  L  N  M  R  A  K  S  I  Y  I  F  P  V  L  V  F  S  I  Q  A  Y  N  C  C  F  L  V  A  L  L  K  M  L  T  F  I  S  C  F  F  C  V  *  T  S  </first_frame>
            <second_frame>  C  E  C  N  G  L  K  E  V  A  N  Y  W  K  Q  V  I  Q  V  N  D  Y  Q  K  N  R  F  V  N  R  V  V  S  S  M  F  N  T  V  S  G  K  K  I  A  I  L  G  F  A  F  K  K  D  T  G  D  T  R  E  T  P  A  I  D  V  C  K  G  L  L  G  D  N  A  N  L  S  I  Y  D  P  Q  V  T  E  D  Q  I  R  K  D  L  S  M  K  K  F  D  W  D  N  P  I  H  L  Q  P  M  S  P  T  V  M  K  Q  L  N  V  V  W  D  A  Y  A  A  T  K  G  A  H  G  L  C  L  L  T  E  W  D  E  F  K  T  L  D  F  K  K  I  Y  D  N  M  Q  K  P  A  F  V  F  D  G  R  N  I  V  D  E  Q  K  L  R  E  I  G  F  I  V  Y  S  I  G  K  P  L  D  G  W  L  K  D  M  P  A  V  A  *  P  P  W  N  K  H  *  T  *  E  Q  N  L  F  I  F  F  Q  F  L  S  F  P  F  K  L  T  I  V  V  S  *  *  H  C  *  K  C  L  P  L  Y  H  V  F  F  V  C  E  L  Q </second_frame>
            <third_frame>   V  N  A  M  V  S  K  K  L  L  T  T  G  N  K  *  F  R  *  M  T  T  K  R  I  G  L  L  T  E  L  S  P  L  C  S  T  Q  F  Q  A  R  R  L  L  S  L  D  L  L  S  R  K  I  Q  V  T  L  E  R  H  Q  Q  L  M  C  A  K  A  Y  W  E  T  M  L  T  *  A  Y  M  I  H  R  S  L  R  I  K  S  E  R  I  C  Q  *  K  S  L  I  G  I  I  Q  F  T  S  S  Q  *  A  P  L  *  *  S  N  S  M  *  Y  G  M  L  M  Q  P  Q  K  A  P  T  A  S  V  F  *  P  S  G  M  S  S  R  L  L  I  S  R  R  F  M  I  T  C  K  N  L  H  L  C  L  M  E  G  T  L  L  M  N  R  S  S  E  K  S  G  S  S  S  T  P  L  G  N  L  *  M  D  G  S  R  I  C  L  L  W  H  N  P  P  G  I  S  T  E  H  E  S  K  I  Y  L  Y  F  S  S  S  C  L  F  H  S  S  L  Q  L  L  F  P  S  S  I  V  K  N  A  Y  L  Y  I  M  F  F  L  C  V  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90580" stop="91173"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CECNGLKEVANYWKQVIQVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDNANLSIYDPQVTEDQIRKDLSMKKFDWDNPIHLQPMSPTVMKQLNVVWDAYAATKGAHGLCLLTEWDEFKTLDFKKIYDNMQKPAFVFDGRNIVDEQKLREIGFIVYSIGKPLDGWLKDMPAVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="94197" PGL_stop="97593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94197" e_stop="94391"/>
            <exon e_start="95477" e_stop="95624"/>
            <exon e_start="95841" e_stop="97593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.687" acc_prob="0.981" e_score="0.954"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="94197" e_stop="94391" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.687" acc_prob="0.981">
            <gDNA_intron_boundary i_start="94392" i_stop="95476" i_length="1085"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95477" e_stop="95624" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95625" i_stop="95840" i_length="216"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="95841" e_stop="97593" e_length="1753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94197" stop="94391"/>
              <exon start="95477" stop="95624"/>
              <exon start="95841" stop="96222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94197" stop="94391"/>
              <exon start="95477" stop="95624"/>
              <exon start="95841" stop="96129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94236" stop="94391"/>
              <exon start="95477" stop="95624"/>
              <exon start="95841" stop="96208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94237" stop="94391"/>
              <exon start="95477" stop="95624"/>
              <exon start="95841" stop="96065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96122" stop="96875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96367" stop="96984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96371" stop="97089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96902" stop="97593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97204" stop="97593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGACCCACCTTTACCCTCTATTTTTTCGTCAACAATTTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAG : TTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAG : GTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGGTTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATAGTAAAAATATATCCGTGAAGGAGAGCACTCAAGAAAGCTCAAATCTTCCATCTCAAGCTCTAGAATCAGATTTTGTAGATCATCATGATGAAGAAAATAAACTTGCTGGGACATGTATCATCCCAATGCCTAAATTGGAATCACCTGCAGACCATGAGGAGAATGTTGGAGCAGGAAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTCAGATACACCACAGGTAAAAACTGATGATTGTAAACACTGGGCAAGTCATTTTGCTGGTGTTGGCATTGACAGTGGGCATGATTTTGTGATGGAGCCATCTAATGGTAAAGAATGGGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</gDNA_template>
            <first_frame> L  *  P  T  F  T  L  Y  F  F  V  N  N  F  F  P  K  I  N  F  S  S  S  T  P  L  I  D  L  D  F  S  S  *  R  S  N  Q  P  P  I  L  L  I  R  F  I  L  Y  R  L  V  P  L  L  D  L  S  V  W  K  S  N  S  E  :  L  N  M  V  Q  K  R  P  Y  S  E  E  K  L  Y  E  V  S  S  K  Q  P  R  H  V  E  P  S  T  Q  L  V  S  F  L  Q  F  P  C  E  S  V  A  P  N  S  Y  T  S   : G  G  D  E  E  K  F  S  E  V  R  A  F  S  E  K  R  P  D  S  C  D  V  T  A  V  P  V  S  S  E  K  A  I  E  T  S  I  H  G  S  A  S  N  S  S  W  T  S  S  S  T  S  E  E  D  I  R  S  E  V  P  F  H  V  L  T  A  S  K  Y  Y  S  S  D  P  P  F  R  V  V  I  H  P  M  E  V  Y  S  P  L  F  N  N  P  P  R  K  S  V  P  I  G  P  D  F  Q  A  E  L  P  E  W  G  A  Y  D  S  K  N  I  S  V  K  E  S  T  Q  E  S  S  N  L  P  S  Q  A  L  E  S  D  F  V  D  H  H  D  E  E  N  K  L  A  G  T  C  I  I  P  M  P  K  L  E  S  P  A  D  H  E  E  N  V  G  A  G  R  I  G  C  S  C  G  D  A  G  S  F  G  C  V  R  L  H  I  M  E  A  R  E  K  L  K  A  A  L  G  E  E  T  F  V  R  L  G  V  Y  D  M  G  E  I  V  A  E  K  W  S  E  E  E  E  E  L  F  H  E  V  V  F  S  N  P  A  A  L  G  K  N  F  W  D  H  L  A  V  E  F  P  S  R  S  K  R  D  L  V  S  Y  Y  F  N  V  F  I  L  R  K  R  A  K  Q  N  R  F  D  P  S  N  I  D  S  D  N  D  E  W  Q  E  I  D  D  D  V  V  A  T  G  A  Q  M  T  D  D  D  E  D  S  V  V  E  S  P  I  Y  Q  N  Y  P  G  H  N  E  I  Y  V  T  E  K  Q  A  Y  D  E  E  A  G  V  A  T  L  E  D  Y  Q  T  I  N  F  C  R  R  K  V  L  S  D  V  S  K  A  C  P  D  E  L  I  D  N  N  S  S  C  G  H  N  I  Q  P  L  D  R  H  H  S  N  E  V  G  N  H  D  V  E  D  N  S  C  T  T  D  A  A  G  A  S  S  D  T  P  Q  V  K  T  D  D  C  K  H  W  A  S  H  F  A  G  V  G  I  D  S  G  H  D  F  V  M  E  P  S  N  G  K  E  W  D  M  G  G  Y  L  S  C  P  K  N  E  V  D  L  L  P  T  C  S  M  I  E  E  V  F  G  D  E  A  W  S  S  K  H  R  D  G  H  S  L  S  K  H  *  P  V  A  Y  D  T  R  L  F  F  A  V  G  S  S  L  E  H  F  L  Q  K  *  D  P  F  L  L  V  Y  Y  L  V  V  K  G  Q  S  M  L  G  I  K  V  E  I  F  D  L  A  L  G  C  *  *  E  A  V  L  R  *  A  V  R  I  N  L  Y  V  N  Y  M  A  E  L  S  H  L  S  T  N  E  K  K   </first_frame>
            <second_frame>  F  D  P  P  L  P  S  I  F  S  S  T  I  F  S  P  K  S  I  S  H  L  L  P  L  *  S  T  L  I  F  L  L  E  D  Q  I  N  L  R  Y  F  *  F  V  S  F  S  I  D  W  Y  L  F  W  I  Y  P  S  G  N  R  I  P  S :   *  I  W  C  K  K  D  H  T  V  K  K  S  C  M  R  F  H  L  S  S  R  D  M  *  N  R  V  L  S  *  F  P  F  C  S  F  R  V  N  Q  W  L  P  T  L  T  L  Q  :  V  A  M  R  R  N  F  Q  K  S  E  L  L  V  R  K  D  L  I  V  A  M  *  L  L  S  L  F  L  Q  R  K  Q  L  R  R  A  S  M  A  L  L  Q  T  L  L  G  P  L  V  A  P  A  K  K  T  L  G  P  R  C  L  F  M  Y  *  R  L  L  N  I  T  V  V  I  L  H  S  E  L  L  F  I  Q  W  R  S  I  P  L  F  S  T  I  L  L  G  N  R  F  P  L  D  Q  I  S  K  P  N  Y  Q  N  G  V  H  M  I  V  K  I  Y  P  *  R  R  A  L  K  K  A  Q  I  F  H  L  K  L  *  N  Q  I  L  *  I  I  M  M  K  K  I  N  L  L  G  H  V  S  S  Q  C  L  N  W  N  H  L  Q  T  M  R  R  M  L  E  Q  E  E  L  G  A  P  V  E  M  L  V  P  L  D  V  F  G  C  T  S  W  K  Q  G  R  N  L  R  R  P  W  V  R  K  H  L  L  G  W  V  F  M  I  W  E  R  *  W  Q  R  N  G  V  K  R  K  R  N  Y  F  M  K  L  Y  F  P  I  L  Q  H  *  A  R  I  S  G  T  T  L  L  L  N  F  L  H  G  A  R  E  I  L  L  A  I  T  S  M  S  L  F  C  G  S  V  P  S  R  I  G  L  T  H  Q  I  *  T  V  I  T  M  N  G  R  R  L  M  M  M  L  L  L  R  E  L  K  *  Q  M  T  T  R  I  L  W  L  N  H  Q  Y  I  K  I  I  L  V  T  M  R  Y  M  *  L  K  N  K  H  M  M  K  K  L  V  L  Q  P  W  K  I  I  R  R  *  I  F  A  G  G  R  S  *  V  M  C  Q  K  H  V  L  M  N  *  L  I  I  T  V  V  V  V  T  I  F  S  L  *  T  D  I  I  Q  M  K  W  V  T  M  M  L  K  I  T  L  V  P  L  M  Q  L  G  L  L  Q  I  H  H  R  *  K  L  M  I  V  N  T  G  Q  V  I  L  L  V  L  A  L  T  V  G  M  I  L  *  W  S  H  L  M  V  K  N  G  I  W  E  G  T  *  A  V  L  R  M  K  L  I  C  Y  Q  L  A  L  *  L  R  K  C  L  E  T  K  P  G  V  P  S  T  E  M  V  T  V  *  A  S  I  D  L  L  H  M  I  P  V  Y  F  L  P  L  D  H  P  W  N  T  S  C  K  S  E  I  H  F  Y  L  Y  I  I  *  W  *  K  D  R  A  C  *  G  *  K  L  R  F  S  T  L  L  L  V  V  S  R  K  L  F  *  G  R  R  L  G  L  I  Y  M  *  I  I  W  P  S  *  A  I  F  R  Q  M  K  K  K  </second_frame>
            <third_frame>   L  T  H  L  Y  P  L  F  F  R  Q  Q  F  F  P  Q  N  Q  F  L  I  F  Y  P  F  N  R  P  *  F  F  F  L  K  I  K  S  T  S  D  T  S  N  S  F  H  S  L  S  I  G  T  S  F  G  S  I  R  L  E  I  E  F  R   : V  K  Y  G  A  K  K  T  I  Q  *  R  K  V  V  *  G  F  I  *  A  A  E  T  C  R  T  E  Y  S  A  S  F  L  F  A  V  S  V  *  I  S  G  S  Q  L  L  H  F  R :   W  R  *  G  E  I  F  R  S  Q  S  F  *  *  E  K  T  *  *  L  R  C  D  C  C  P  C  F  F  R  E  S  N  *  D  E  H  P  W  L  C  F  K  L  F  L  D  L  *  *  H  Q  R  R  R  H  *  V  R  G  A  F  S  C  I  D  G  F  *  I  L  Q  *  *  S  S  I  P  S  C  Y  S  S  N  G  G  L  F  P  S  F  Q  Q  S  S  S  E  I  G  S  H  W  T  R  F  P  S  R  I  T  R  M  G  C  I  *  *  *  K  Y  I  R  E  G  E  H  S  R  K  L  K  S  S  I  S  S  S  R  I  R  F  C  R  S  S  *  *  R  K  *  T  C  W  D  M  Y  H  P  N  A  *  I  G  I  T  C  R  P  *  G  E  C  W  S  R  K  N  W  V  L  L  W  R  C  W  F  L  W  M  C  S  V  A  H  H  G  S  K  G  E  T  *  G  G  L  G  *  G  N  I  C  *  V  G  C  L  *  Y  G  R  D  S  G  R  E  M  E  *  R  G  R  G  I  I  S  *  S  C  I  F  Q  S  C  S  I  R  Q  E  F  L  G  P  P  C  C  *  I  S  F  T  E  Q  E  R  S  C  *  L  L  L  Q  C  L  Y  F  A  E  A  C  Q  A  E  *  V  *  P  I  K  Y  R  Q  *  *  R  *  M  A  G  D  *  *  *  C  C  C  Y  G  S  S  N  D  R  *  R  R  G  F  C  G  *  I  T  N  I  S  K  L  S  W  S  Q  *  D  I  C  D  *  K  T  S  I  *  *  R  S  W  C  C  N  L  G  R  L  S  D  D  K  F  L  Q  E  E  G  L  E  *  C  V  K  S  M  S  *  *  I  D  *  *  *  Q  *  L  W  S  Q  Y  S  A  S  R  Q  T  S  F  K  *  S  G  *  P  *  C  *  R  *  L  L  Y  H  *  C  S  W  G  F  F  R  Y  T  T  G  K  N  *  *  L  *  T  L  G  K  S  F  C  W  C  W  H  *  Q  W  A  *  F  C  D  G  A  I  *  W  *  R  M  G  Y  G  R  V  L  E  L  S  *  E  *  S  *  F  V  T  N  L  L  Y  D  *  G  S  V  W  R  R  S  L  E  F  Q  A  Q  R  W  S  Q  F  K  Q  A  L  T  C  C  I  *  Y  P  F  I  F  C  R  W  I  I  L  G  T  L  L  A  K  V  R  S  I  F  T  C  I  L  F  S  G  E  R  T  E  H  V  R  D  K  S  *  D  F  R  P  C  S  W  L  L  V  G  S  C  F  E  V  G  G  *  D  *  F  I  C  K  L  Y  G  R  V  E  P  S  F  D  K  *  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94299" stop="94391"/>
                    <exon start="95477" stop="95624"/>
                    <exon start="95841" stop="97339"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1737</number_coding_nucleotides>
                  <number_encoded_amino_acids>579</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSNQPPILLIRFILYRLVPLLDLSVWKSNSELNMVQKRPYSEEKLYEVSSKQPRHVEPSTQLVSFLQFPCESVAPNSYTSGGDEEKFSEVRAFSEKRPDSCDVTAVPVSSEKAIETSIHGSASNSSWTSSSTSEEDIRSEVPFHVLTASKYYSSDPPFRVVIHPMEVYSPLFNNPPRKSVPIGPDFQAELPEWGAYDSKNISVKESTQESSNLPSQALESDFVDHHDEENKLAGTCIIPMPKLESPADHEENVGAGRIGCSCGDAGSFGCVRLHIMEAREKLKAALGEETFVRLGVYDMGEIVAEKWSEEEEELFHEVVFSNPAALGKNFWDHLAVEFPSRSKRDLVSYYFNVFILRKRAKQNRFDPSNIDSDNDEWQEIDDDVVATGAQMTDDDEDSVVESPIYQNYPGHNEIYVTEKQAYDEEAGVATLEDYQTINFCRRKVLSDVSKACPDELIDNNSSCGHNIQPLDRHHSNEVGNHDVEDNSCTTDAAGASSDTPQVKTDDCKHWASHFAGVGIDSGHDFVMEPSNGKEWDMGGYLSCPKNEVDLLPTCSMIEEVFGDEAWSSKHRDGHSLSKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="112400" PGL_stop="116025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112400" e_stop="112483"/>
            <exon e_start="113696" e_stop="114244"/>
            <exon e_start="114538" e_stop="114631"/>
            <exon e_start="114756" e_stop="114892"/>
            <exon e_start="115648" e_stop="115745"/>
            <exon e_start="116006" e_stop="116025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.724" acc_prob="0.785" e_score="0.972"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="112400" e_stop="112483" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.724" acc_prob="0.785">
            <gDNA_intron_boundary i_start="112484" i_stop="113695" i_length="1212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113696" e_stop="114244" e_length="549"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="114245" i_stop="114537" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114538" e_stop="114631" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="114632" i_stop="114755" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114756" e_stop="114892" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114893" i_stop="115647" i_length="755"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="115648" e_stop="115745" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115746" i_stop="116005" i_length="260"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116006" e_stop="116025" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112400" stop="112483"/>
              <exon start="113696" stop="114244"/>
              <exon start="114538" stop="114631"/>
              <exon start="114756" stop="114773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112413" stop="112483"/>
              <exon start="113696" stop="114244"/>
              <exon start="114538" stop="114549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112441" stop="112483"/>
              <exon start="113696" stop="114180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112450" stop="112483"/>
              <exon start="113696" stop="114239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113696" stop="114108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113699" stop="114244"/>
              <exon start="114538" stop="114631"/>
              <exon start="114756" stop="114892"/>
              <exon start="115648" stop="115700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113904" stop="114244"/>
              <exon start="114538" stop="114631"/>
              <exon start="114756" stop="114892"/>
              <exon start="115648" stop="115745"/>
              <exon start="116006" stop="116025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113904" stop="114244"/>
              <exon start="114538" stop="114631"/>
              <exon start="114756" stop="114892"/>
              <exon start="115648" stop="115745"/>
              <exon start="116006" stop="116025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113904" stop="114244"/>
              <exon start="114538" stop="114631"/>
              <exon start="114756" stop="114892"/>
              <exon start="115648" stop="115675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113904" stop="114244"/>
              <exon start="114538" stop="114631"/>
              <exon start="114756" stop="114875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113904" stop="114244"/>
              <exon start="114538" stop="114631"/>
              <exon start="114756" stop="114828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113904" stop="114244"/>
              <exon start="114538" stop="114579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113904" stop="114244"/>
              <exon start="114538" stop="114573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114063" stop="114244"/>
              <exon start="114538" stop="114631"/>
              <exon start="114756" stop="114892"/>
              <exon start="115648" stop="115692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAATATCCCCAATATCTGTACCCACTTCACATTATAGTTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAG : ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG : GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA : TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG : GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG : GCATAAAGATGCATTGGATC</gDNA_template>
            <first_frame> L  Q  I  S  P  I  S  V  P  T  S  H  Y  S  F  L  D  F  F  Y  N  L  S  S  S  D  F  Q  :  I  I  S  *  S  T  R  S  I  P  V  G  L  L  S  I  Y  Q  K  M  H  G  L  K  K  S  P  L  H  R  S  A  R  K  K  S  A  D  P  V  A  H  S  N  S  G  S  N  P  F  D  S  D  N  E  S  D  K  K  Q  T  V  K  P  S  R  K  I  S  S  E  P  S  A  A  A  P  N  L  S  T  N  P  F  D  D  D  E  I  K  E  T  P  S  H  A  Y  S  T  S  T  A  R  N  K  Y  K  N  D  F  R  E  S  G  G  F  E  N  Q  T  V  E  E  L  E  N  Y  A  V  Y  R  S  E  E  T  T  K  S  V  N  S  C  L  K  I  A  Q  D  M  R  E  D  A  T  K  T  L  I  T  L  H  Q  Q  G  E  Q  I  T  R  T  H  M  T  A  A  D  I  D  H  D  L  S  R  :  G  E  K  L  L  G  S  L  G  G  I  F  S  K  T  W  K  P  K  T  S  R  P  I  T  G  P  V  I  T  R   : M  S  D  D  P  V  Q  R  R  G  N  H  L  E  Q  R  E  K  L  G  L  N  S  A  P  K  A  R  S  S  S  R  T  P  H  P  E  P  T  N  A  M  Q  K  V  E  :  A  E  K  A  K  Q  D  D  G  L  S  E  L  S  D  L  L  G  E  L  K  N  M  A  V  D  M  G  S  E  I  E  R :   H  K  D  A  L  D  </first_frame>
            <second_frame>  Y  K  Y  P  Q  Y  L  Y  P  L  H  I  I  V  S  *  I  F  S  T  I  Y  L  L  R  I  F  R :   *  F  L  N  L  P  G  P  S  P  W  D  Y  F  L  S  I  K  K  C  M  V  L  R  S  L  L  Y  I  G  V  L  E  K  N  L  R  I  L  W  P  I  V  I  L  D  Q  I  P  L  I  L  T  M  S  Q  T  R  S  K  L  *  N  H  P  G  K  Y  H  R  S  L  L  Q  L  P  Q  I  *  V  Q  T  L  L  M  M  M  K  L  K  R  L  L  H  M  L  T  Q  L  R  R  Q  E  I  N  T  R  M  I  S  G  S  L  V  D  L  R  T  K  L  *  R  S  W  K  T  M  P  S  T  G  Q  K  R  L  Q  N  L  L  I  A  A  *  R  L  H  K  T  C  E  R  M  Q  Q  K  L  *  *  L  Y  I  N  R  E  N  K  L  Q  E  P  I  *  L  Q  Q  I  S  I  M  I  L  A  G :   V  K  N  S  W  G  V  L  E  A  Y  F  R  R  L  G  S  Q  R  R  V  A  R  L  Q  G  P  L  S  Q  E  :  C  Q  M  I  Q  F  K  E  G  A  T  T  W  S  R  G  R  N  *  D  *  T  L  H  P  R  Q  G  Q  V  Q  G  H  H  T  Q  S  L  Q  M  Q  C  R  K  L  R :   L  R  K  P  S  K  M  M  D  C  Q  N  S  A  I  C  W  G  S  S  R  I  W  L  L  T  W  D  L  K  L  R   : G  I  K  M  H  W  I </second_frame>
            <third_frame>   T  N  I  P  N  I  C  T  H  F  T  L  *  F  L  R  F  F  L  Q  F  I  F  F  G  F  S   : D  N  F  L  I  Y  Q  V  H  P  R  G  I  T  F  Y  L  S  K  N  A  W  S  *  E  V  S  F  T  S  E  C  *  K  K  I  C  G  S  C  G  P  *  *  F  W  I  K  S  L  *  F  *  Q  *  V  R  Q  E  A  N  C  K  T  I  Q  E  N  I  I  G  A  F  C  S  C  P  K  F  E  Y  K  P  F  *  *  *  *  N  *  R  D  S  F  T  C  L  L  N  F  D  G  K  K  *  I  Q  E  *  F  P  G  V  W  W  I  *  E  P  N  C  R  G  V  G  K  L  C  R  L  Q  V  R  R  D  Y  K  I  C  *  *  L  P  E  D  C  T  R  H  A  R  G  C  N  K  N  F  D  N  F  T  S  T  G  R  T  N  Y  K  N  P  Y  D  C  S  R  Y  R  S  *  S  *  Q   : G  *  K  T  L  G  E  S  W  R  H  I  F  E  D  L  E  A  K  D  E  S  P  D  Y  R  A  R  Y  H  K  N :   V  R  *  S  S  S  K  K  G  Q  P  L  G  A  E  G  E  I  R  I  E  L  C  T  Q  G  K  V  K  F  K  D  T  T  P  R  A  Y  K  C  N  A  E  S  *   : G  *  E  S  Q  A  R  *  W  T  V  R  T  Q  R  S  V  G  G  A  Q  E  Y  G  C  *  H  G  I  *  N  *  E  :  A  *  R  C  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0062L07.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113708" stop="114244"/>
                    <exon start="114538" stop="114631"/>
                    <exon start="114756" stop="114892"/>
                    <exon start="115648" stop="115745"/>
                    <exon start="116006" stop="116024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STRSIPVGLLSIYQKMHGLKKSPLHRSARKKSADPVAHSNSGSNPFDSDNESDKKQTVKPSRKISSEPSAAAPNLSTNPFDDDEIKETPSHAYSTSTARNKYKNDFRESGGFENQTVEELENYAVYRSEETTKSVNSCLKIAQDMREDATKTLITLHQQGEQITRTHMTAADIDHDLSRGEKLLGSLGGIFSKTWKPKTSRPITGPVITRMSDDPVQRRGNHLEQREKLGLNSAPKARSSSRTPHPEPTNAMQKVEAEKAKQDDGLSELSDLLGELKNMAVDMGSEIERHKDALD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 256 chains have been computed
$ 
$ memory statistics:
$ 359120 bytes spliced alignments in total
$ 156 spliced alignments have been stored
$ 2302 bytes was the average size of a spliced alignment
$ 23408 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1800 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 286 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:44:07
-->
