<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:33:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324688" ref_strand="+" ref_description="SGN-E324688 [cTOC-8-G3]">
      <seq>ttgatttccttttcggctgtaagccaatattaacgacaaaggttaagcttaagacacctcactactgcaaatccaacaaataatttgactctgctcaattgctcatacatttgacacctcattgtattacaaagtttgtctatatttcctctttcgaacttcgacaatggcaacagttttgtaccaaaaattccttaattcttgaatgaatgaacgctaattgttgctatataatacacttagacaaatctgaaacttacccttttcatttcacactcttttcttgttcttttcccccaccacaaggtactggctgataaagcttgcccctttttggcacagaggctgcctgcacattatcagtgttgctttttctttctttttggaacttgtgctctggtgatctcaaattcttgtggtgtttaaggttatttctcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16680" stop="17720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16980" g_stop="17420" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E324688" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16980" e_stop="17420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCCTTTTCGGCTGTAAGCCAATATTAACGACAAATTTTAAGCTTAAGACACCTCACTACTGCAAATCCAACAAATAATTTGACTCTGCTCAATTGCTCATACATTTGACACCTCATTGTATTACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCT</genome_strand>
        <mrna_strand>TTGATTTCCTTTTCGGCTGTAAGCCAATATTAACGACAAAGGTTAAGCTTAAGACACCTCACTACTGCAAATCCAACAAATAATTTGACTCTGCTCAATTGCTCATACATTTGACACCTCATTGTATTACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374807" ref_strand="+" ref_description="SGN-E374807 [TUS-14-L22]">
      <seq>acaaagtttgtctatatttcctctttcgaacttcgacaatggcaacagttttgtaccaaaaattccttaattcttgaatgaatgaacgctaattgttgctatataatacacttagacaaatctgaaacttacccttttcatttcacactcttttcttgttcttttcccccaccacaaggtactggctgataaagcttgcccctttttggcacagaggctgcctgcacattatcagtgttgctttttctttctttttggaacttgtgctctggtgatctcaaattcttgtggtgtttaaggttatttctcatctgggttcagctcaattgttcgcttatgaatctgttcaaagaggggtgaagctgagtagtttaaaagccaatgggcttcctacccttattgttaatctttttggcactgtgtcctgcatttctggcacaaatagttgaagaaacagaatttctgattgatggaactgtaaaaattgctgagacagataataattatgtttgcgctactcttgactggtggcctaaagaaaagtgtaaccacaacgattgcccttggggctcgacatctctgataaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16808" stop="18714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17108" g_stop="17440" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17441" i_stop="18158" i_length="718">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18159" g_stop="18414" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="589" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E374807" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17108" e_stop="17440"/>
          <exon e_start="18159" e_stop="18414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCGGTAAGTCTGAAAGATCTTAGCTTTTTGTTGTTTTGTATGCTATTGTCTAAGGGAGTTCTTGTCATTGTTGGATCTAATTCTTGTTTTGCTGATTCTGATTGGTTAATTTTCATTCATCTTTTTAATTAATTCCAAAGTGTAATTAAGTATACGCACTTGTCCAGTTTGGTTTTATAGCTTTTGTAATATCTTACCAAGAAAAGCAATATGCTATGCACCCTCATTTCCTGTTCATGTTTTGTTAATCTACTTTGATTTTTGACATCATGTTAGATTCAGTTACTCTAATCAATAGACATAGATTGATCATAGTTTGGATAAAGGAATATTATGTAATTTGGTCGAGATGTTTTCTTCACTGTTGTTTTTCCTTTTCATTGCTATTTTGTTTTGCTTCACTTGAGCCTAGTATCTCTTGGAAACAACCTCGTGGAGGTAGGGGTAAGGTCTGTGTACACTCACCCCAATACCCCGTTGGGTATGTTGTTGTTGTTGTTATATGCAAATTAGTTGTAGCTACCTCAAGATACTGAAGGAGCCTTAAATATGGAATGACAAGAAGAAGTTTATTTTGCTAAGATGCTTAATCAGAGAATTGCTGCTAGCATTCTGATGAAATGCCATATTTTTCCTCATTATCGTTCATGTAAAAGTTCTTTTATTGCTTGTTAAACTTCTCTTAGACTCTTAACATTTATTATATCCTCGTCTGTTACAGCTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATC</genome_strand>
        <mrna_strand>ACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCTACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202206" ref_strand="+" ref_description="SGN-E202206 [cLEC-7-F20]">
      <seq>acaaagtttgtctatatttcctctttcgaacttcgacaatggcaacagttttgtaccaaaaattccttaattcttgaatgaatgaacgctaattgttgctatataatacacttagacaaatctgaaacttacccttttcatttcacactcttttcttgttcttttcccccaccacaaggtactggctgataaagcttgcccctttttggcacagaggctgcctgcacattatcagtgttgctttttctttctttttggaacttgtgctctggtgatctcaaattcttgtggtgtttaaggttatttctcatctgggttcagctcaattgttcgcttatgaatctgttcaaagaggggtgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16808" stop="18490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17108" g_stop="17440" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17441" i_stop="18158" i_length="718">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18159" g_stop="18190" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="365" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E202206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17108" e_stop="17440"/>
          <exon e_start="18159" e_stop="18190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCGGTAAGTCTGAAAGATCTTAGCTTTTTGTTGTTTTGTATGCTATTGTCTAAGGGAGTTCTTGTCATTGTTGGATCTAATTCTTGTTTTGCTGATTCTGATTGGTTAATTTTCATTCATCTTTTTAATTAATTCCAAAGTGTAATTAAGTATACGCACTTGTCCAGTTTGGTTTTATAGCTTTTGTAATATCTTACCAAGAAAAGCAATATGCTATGCACCCTCATTTCCTGTTCATGTTTTGTTAATCTACTTTGATTTTTGACATCATGTTAGATTCAGTTACTCTAATCAATAGACATAGATTGATCATAGTTTGGATAAAGGAATATTATGTAATTTGGTCGAGATGTTTTCTTCACTGTTGTTTTTCCTTTTCATTGCTATTTTGTTTTGCTTCACTTGAGCCTAGTATCTCTTGGAAACAACCTCGTGGAGGTAGGGGTAAGGTCTGTGTACACTCACCCCAATACCCCGTTGGGTATGTTGTTGTTGTTGTTATATGCAAATTAGTTGTAGCTACCTCAAGATACTGAAGGAGCCTTAAATATGGAATGACAAGAAGAAGTTTATTTTGCTAAGATGCTTAATCAGAGAATTGCTGCTAGCATTCTGATGAAATGCCATATTTTTCCTCATTATCGTTCATGTAAAAGTTCTTTTATTGCTTGTTAAACTTCTCTTAGACTCTTAACATTTATTATATCCTCGTCTGTTACAGCTTATGAATCTGTTCAAAGAGGGGTGAAGCTG</genome_strand>
        <mrna_strand>ACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGAATCTGTTCAAAGAGGGGTGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745715" ref_strand="+" ref_description="SGN-E745715 [GI|47105155]">
      <seq>gacccttttcatttcacactcttttcttgttcttttcccccaccacaaggtactggctgataaagcttgcccctttttggcacagaggctgcctgcacattatcagtgttgctttttctttctttttggaacttgtgctctggtgatctcaaattcttgtggtgtttaaggttatttctcatctgggttcagctcaattgttcgcttatgaatctgttcaaagaggggtgaagctgagtagtttaaaagccaatgggcttcccacccttattgttaatctttttggcactgtgtcctgcatttctggcacaaatagttgaagaaacagaatttctgattgatggaactgtaaaaattgctgagacagataataattatgtttgcgctactcttgactggtggcctaaagaaaagtgtaaccacaacgattgcccttggggctcgacatctctgataaatctggatttatctcacccctttctggcaaattctattcaagctttcaaccatctgagattacgacttggaggttctttgcaaaaccgaataatctatgatgtgggcaatttggagtcgccttgccatccgtttaccaagcaaggggatgagttgtttggattttcaaatggatgtttacgtatggatagatgggatgagctaaatagctttttcaataagacaggagcacttgtgacctttggtctgaatgcattgcgagggaggcagaggaccagtaagcgtgtctgggaagggaattgggattccagcaacgcccatgatttcatagattacactgtttccaagggctaccaaatacactcatgggaatttggaaatgagttgagtggtaaggggattggtgcaaaggttgatgctgaacaatatggagaagatgttatacatcttaacaatctcatagaccaattgtataagcatttccaaccccgaccacttctcttagcaccaggaggattctatgataaagagtggtttgagacgttccttgagatgtcagggccaggcactgtcgatgccttgactcatcatatatataatcttggtgcaggatctgacctcaatctcgtaaacaattttaaaccctctgcacttgaataaaattgctgacacattcagtaatcttagtcaaaccattgaaatgaatggtccttggtcttcagcttgggttggagaatctggtggggccttcaataacggaggtcctaatgtgtctaacacctttgtgaacagtttttggtacttggatcagcttgggatggcagccacatatcacactaaagtatattgcaggcagacttttattggtggaaactatgggctccttgacacaagtacatttgtcccaaatcctgattattatagtgcacttctttggcatcggctgatgggaaaaggagttcttgctgttagcaacaatgcatcatcatatctgcgctcgtatgcccactgtacaagacatagagcaggtgtaacattacttttgatcaatctaagcaaccaaactcattatggagtcaacatcgaatctagtgtaagcatcacctcgcatgtcaaagagaaatcaaatcacaagagttctttcgtgcaacgtcttaagaaaactatttcatgggttggaagaaaatcatcagatgttacattatcacgagaagagtaccatctgactccactagatgggaaccttcaaagcagaaccatgctcttgaatggaaaaccattacaactcgcagaaaatgggaacatcccaagtttgtctccagtccttgtaaagctgaagtctccaatatcaatttcccccttgtccatcaaattcatagtattcccctacttaagctctcctgtttgtacatagaattaggaaatacttttgtctgatagttatcatctggcactcttatctattcacaacttagtaattgtataattgctacaataaactgagctgccaaattttatgcagttatgtattatatggctaggtaaatccatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16938" stop="22889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17237" g_stop="17440" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17441" i_stop="18158" i_length="718">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18159" g_stop="18416" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="462" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18417" i_stop="18510" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18511" g_stop="18547" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="499" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18548" i_stop="18761" i_length="214">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18762" g_stop="18945" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="683" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18946" i_stop="19362" i_length="417">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19363" g_stop="19511" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="832" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19512" i_stop="19608" i_length="97">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19609" g_stop="19842" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="1066" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20364" g_stop="20553" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1067" r_stop="1254" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20642" g_stop="20767" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1255" r_stop="1380" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20893" g_stop="20992" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1381" r_stop="1480" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="22060" g_stop="22589" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1481" r_stop="2010" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2011" polyA_stop="2024"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E745715" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2012</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17237" e_stop="17440"/>
          <exon e_start="18159" e_stop="18416"/>
          <exon e_start="18511" e_stop="18547"/>
          <exon e_start="18762" e_stop="18945"/>
          <exon e_start="19363" e_stop="19511"/>
          <exon e_start="19609" e_stop="19842"/>
          <exon e_start="20364" e_stop="20553"/>
          <exon e_start="20642" e_stop="20767"/>
          <exon e_start="20893" e_stop="20992"/>
          <exon e_start="22060" e_stop="22589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCGGTAAGTCTGAAAGATCTTAGCTTTTTGTTGTTTTGTATGCTATTGTCTAAGGGAGTTCTTGTCATTGTTGGATCTAATTCTTGTTTTGCTGATTCTGATTGGTTAATTTTCATTCATCTTTTTAATTAATTCCAAAGTGTAATTAAGTATACGCACTTGTCCAGTTTGGTTTTATAGCTTTTGTAATATCTTACCAAGAAAAGCAATATGCTATGCACCCTCATTTCCTGTTCATGTTTTGTTAATCTACTTTGATTTTTGACATCATGTTAGATTCAGTTACTCTAATCAATAGACATAGATTGATCATAGTTTGGATAAAGGAATATTATGTAATTTGGTCGAGATGTTTTCTTCACTGTTGTTTTTCCTTTTCATTGCTATTTTGTTTTGCTTCACTTGAGCCTAGTATCTCTTGGAAACAACCTCGTGGAGGTAGGGGTAAGGTCTGTGTACACTCACCCCAATACCCCGTTGGGTATGTTGTTGTTGTTGTTATATGCAAATTAGTTGTAGCTACCTCAAGATACTGAAGGAGCCTTAAATATGGAATGACAAGAAGAAGTTTATTTTGCTAAGATGCTTAATCAGAGAATTGCTGCTAGCATTCTGATGAAATGCCATATTTTTCCTCATTATCGTTCATGTAAAAGTTCTTTTATTGCTTGTTAAACTTCTCTTAGACTCTTAACATTTATTATATCCTCGTCTGTTACAGCTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATCTGGTAAAGTTCTACTATTAATTGATATAGTGGCATATATTGCTTTGTAAAAGTCACAGCACAGTTACCATTCATTATTTTCGTTTGATTTTTTCAGGATTTATCTCACCCCTTTCTGGCAAATTCTATTCAAGGTCAGCTTGTTCCCGTCATGTGATAACTTTACCTTAGTATTTGAGATCTTGTTGTTCTTACTTTAATTAACAAACTTTGACTGGTAAACTCCATAACTTCACCTTAAACATCAAATGAACCATCTATTTACAACAGTGAGCAAATCAGACTTGATGCTTCTTCAGAATGCTCATTGATTTCTCGTCTGTTCTGATTGCTAATTTGGTGGACCAGCTTTCAACCATCTGAGATTACGACTTGGAGGTTCTTTGCAAAACCGAATAATCTATGATGTGGGCAATTTGGAGTCGCCTTGCCATCCGTTTACCAAGCAAGGGGATGAGTTGTTTGGATTTTCAAATGGATGTTTACGTATGGATAGATGGGATGAGCTAAATAGCTTTTTCAATAAGACAGGGTGAGTTATTAACTTATAGCTTTTTCAATAAGACAGGGTGAGTTATTAACTTTTGTGCTGCTTTCTTGTTCCAATTTTATTCTCGGAGTATGCCATAACTTACTTAAAATTTTATGAAATTTGTTAAAGACATAAGATGAAATAAATGTAAACGTAATCTCTCTAACGGTACTCACTTCAACATGGTATTAGAGCCAAACAAAGGTCCTGATTTCAAGTCTTTACCATCACTTATTAACATAAACTAGTTCCACATGCCTGGCAAAGAAAAAAAGAGCATTGGGCCTGCATGTGAGGAGTGTGTTAAGGCATAATGAGAAAATAAAAGTGTCCCCTGCCTATTAATCACTCAGCTTTTACATGAGGTGGTCACTCACTTCAACAAAGTTCATTCCAGTTTCACTAATTATGCTGCAGAGCACTTGTGACCTTTGGTCTGAATGCATTGCGAGGGAGGCAGAGGACCAGTAAGCGTGTCTGGGAAGGGAATTGGGATTCCAGCAACGCCCATGATTTCATAGATTACACTGTTTCCAAGGGCTACCAAATACACTCATGGGAATTTGGTATAATTGCTGACAATTTCCCTCTCTCTTTTTTGGTATTTTACCTTGTTTAATAGAAGTTGGATTTCCTTAAACAATGGTTCCACTTGGTTTGCAGGAAATGAGTTGAGTGGTAAGGGGATTGGTGCAAAGGTTGATGCTGAACAATATGGAGAAGATGTTATACATCTTAACAATCTCATAGACCAATTGTATAAGCATTTCCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTATGATAAAGAGTGGTTTGAGACGTTCCTTGAGATGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAGGTAAGCTAGCATTAAATTTTATGGGTAGCTTGATACTGTATGAAAGCCTTTATTAGCTTAGAAAATCTAGTGCTAGGATGATCACATCAAATCTAAGGAGTGACAGCGTTTTCTTGGATCTATTTGTTTCTGTTTAAAGTGTTTTTTGCGTCTACTACAAAAATCATTTGTTACTTGTAATGTGGCACTAGCTATTGACATCATTAGGAGGTTGAGAACCATCTAGTAAAAGAGAACTAGTTGGTGGAACGAAATTAGATAAATTCTAATTTATCAATCAACAGTATCATTGACAGCACATTTCATTAACAAAAATGTTAGTATTTGCTTCTGTTAAATTTGAATTATGAGCAGCTGCTCTGATAGATGTATGATTTACTTTATCTATCTTTTCTTGTAATTGTTAGTGTACTGGTCTATTTGAGTATAAGGTTACATTACTACTTGTGTTCTCTAGATTTGTAAGTCAATTTACTCATGTACTTGCTCCATTGAATAAAACCAGAAAATTTCTGTTTCAGGATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTGGTAAATTTCTTGGCTGACTTGATTTATTTTTTATTCAGTAATCAGTTAATTATTTTTGTTTCATGCTTTATCTTGACATGGAATTTAGGTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAGGTGAGACAATAGATTTACCAATCCAAGGTTGATTCTCTTTGCTATTAAAAGGAGCATTTATCCTAATTCTAGTTTTTACGTCCCTAATAATCTGATCCAAAATCATTATACTTGAACGAGCACAGTGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGAGTAAGAGCCCTTCACAGAAAGTAATTTGATGAGTTCCTGAAAGGATGTCTTAAACTTACATGCGTAATCACCGTTCTATAAACCTTGTTCATCGTCAATAGTAATATCATTTCTTCTTGTGTTTCATTGAGTCCATCCACTTCAGGTCTTCAATCTAATTGTTTGTAGAGAGTAAAACGTCACAGCTTCTTTTAGTTTGGGAGAAAAGATGCAATGATAAACAACTATATTAGCTTTGCATAGTCAGGTCAAGCCCAGATTAAGGAGGGTTGCGGCAGGTTGGTTATTAACATAAGAATAGTCATAATATACTGAAACCTCTAGATATTGAACATGGTATCCATTTTAGTATTAAATAGGCAAGATGTCCCATCACATCCCTGTCTGAGTGTGAGAGTTTATGCTTAGTTCCAACCATGAAAGGCTCATCAGTAGAAAATTATTAGCATTGGCCGAATTGAGCGAAAATGGACCTATCAGATTCGTATAGAACCAAACTAAATAGTTTGAATAGAACGGAGATCGGAATGATATAGGAGATTCATGTAAGATTGAGGTGTACTTAATTGGTTGATTGATTGATAACGAGGCAAGCTGTTTTTCTTGATTATTATAATTTAGACCATAAATTGTAACTTATAAAGTCCATATGCTTAAAACTACTTCAGGAGGAGTAAAAATAGCAAGGTATTGTGTTTAAATGCTTCGATTGTTATAATTAAAGTTGATGCAATTCAGTCTCAACTAGTTTTTTCTTTTATAAGATGATGGCTCTCCCTTGTGCTTAGTTTGGCAATCGAACTTACCACTCTTGGATATGCTTCTTATGTGTTGCTTACGATGAATGAGTCAATCAAAATGGAGGATAGAACACCTTTCTTATACAATTTTGTCGCATTTTGTTGAAGCCAGTTTCAACTCACTTATATTCCCATTTTCTCTTTAGCCATACTGCAGTAATTTGGTTATTCTTGATTAAATATTCGATAAAGCCTTCATATAAACATGCAATGATTTGCATTTCCCTGCTAAAACCTTTCAATGTTACTGGTGTTCCCTTTGTGCAGGCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCCAAGTTTGTCTCCAGTCCTTGTAAAGCTGAAGTCTCCAATATCAATTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCTACTTAAGCTCTCCTGTTTGTACATAGAATTAGGAAATACTTTTGTCTGATAGTTATCATCTGGCACTCTTATCTATTCACAACTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCCAAATTTTATGCAGTTATGTATTATATGGCTAGGTAAATCCATTTA</genome_strand>
        <mrna_strand>GACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATCTG..............................................................................................GATTTATCTCACCCCTTTCTGGCAAATTCTATTCAAG......................................................................................................................................................................................................................CTTTCAACCATCTGAGATTACGACTTGGAGGTTCTTTGCAAAACCGAATAATCTATGATGTGGGCAATTTGGAGTCGCCTTGCCATCCGTTTACCAAGCAAGGGGATGAGTTGTTTGGATTTTCAAATGGATGTTTACGTATGGATAGATGGGATGAGCTAAATAGCTTTTTCAATAAGACAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTTGTGACCTTTGGTCTGAATGCATTGCGAGGGAGGCAGAGGACCAGTAAGCGTGTCTGGGAAGGGAATTGGGATTCCAGCAACGCCCATGATTTCATAGATTACACTGTTTCCAAGGGCTACCAAATACACTCATGGGAATTTG.................................................................................................GAAATGAGTTGAGTGGTAAGGGGATTGGTGCAAAGGTTGATGCTGAACAATATGGAGAAGATGTTATACATCTTAACAATCTCATAGACCAATTGTATAAGCATTTCCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTATGATAAAGAGTGGTTTGAGACGTTCCTTGAGATGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACCTCAATCTCGTAAAC--AATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG........................................................................................GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG.............................................................................................................................TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCCAAGTTTGTCTCCAGTCCTTGTAAAGCTGAAGTCTCCAATATCAATTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCTACTTAAGCTCTCCTGTTTGTACATAGAATTAGGAAATACTTTTGTCTGATAGTTATCATCTGGCACTCTTATCTATTCACAACTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCCAAATTTTATGCAGTTATGTATTATATGGCTAGGTAAATCCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323606" ref_strand="+" ref_description="SGN-E323606 [cTOC-2-D22]">
      <seq>agtgttgctttttctttctttttggaacttgtgctctggtgatctcaaattcttgtggtgtttaaggttatttctcatctgggttcagctcaattgttcgcttatgaatctgttcaaagaggggtgaagctgagtagtttaaaagccaatgggcttcccacccttattgttaatctttttggcactgtgtcctgcatttctggcacaaatagttgaagaaacagaatttctgattgatggaactgtaaaaattgctgagacagataataattatgtttgcgctactcttgactggtggcctaaagaaaagtgtaaccacaacgattgcccttggggctcgacatctctgataaatctggatttatctcacccctttctggcaaattctattcaaggtcagcttgttcccgtcatgtgataactttaccttagtatttgagatcttgttgttcttactttaattaacaaactttgactggtaaactccataacttcaccttaaacatcaaatgaaccatctatttacaacagtgagcaaatcagacttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17041" stop="19004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17341" g_stop="17440" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17441" i_stop="18158" i_length="718">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18159" g_stop="18416" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="358" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18417" i_stop="18510" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18511" g_stop="18704" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="552" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E323606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17341" e_stop="17440"/>
          <exon e_start="18159" e_stop="18416"/>
          <exon e_start="18511" e_stop="18704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCGGTAAGTCTGAAAGATCTTAGCTTTTTGTTGTTTTGTATGCTATTGTCTAAGGGAGTTCTTGTCATTGTTGGATCTAATTCTTGTTTTGCTGATTCTGATTGGTTAATTTTCATTCATCTTTTTAATTAATTCCAAAGTGTAATTAAGTATACGCACTTGTCCAGTTTGGTTTTATAGCTTTTGTAATATCTTACCAAGAAAAGCAATATGCTATGCACCCTCATTTCCTGTTCATGTTTTGTTAATCTACTTTGATTTTTGACATCATGTTAGATTCAGTTACTCTAATCAATAGACATAGATTGATCATAGTTTGGATAAAGGAATATTATGTAATTTGGTCGAGATGTTTTCTTCACTGTTGTTTTTCCTTTTCATTGCTATTTTGTTTTGCTTCACTTGAGCCTAGTATCTCTTGGAAACAACCTCGTGGAGGTAGGGGTAAGGTCTGTGTACACTCACCCCAATACCCCGTTGGGTATGTTGTTGTTGTTGTTATATGCAAATTAGTTGTAGCTACCTCAAGATACTGAAGGAGCCTTAAATATGGAATGACAAGAAGAAGTTTATTTTGCTAAGATGCTTAATCAGAGAATTGCTGCTAGCATTCTGATGAAATGCCATATTTTTCCTCATTATCGTTCATGTAAAAGTTCTTTTATTGCTTGTTAAACTTCTCTTAGACTCTTAACATTTATTATATCCTCGTCTGTTACAGCTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATCTGGTAAAGTTCTACTATTAATTGATATAGTGGCATATATTGCTTTGTAAAAGTCACAGCACAGTTACCATTCATTATTTTCGTTTGATTTTTTCAGGATTTATCTCACCCCTTTCTGGCAAATTCTATTCAAGGTCAGCTTGTTCCCGTCATGTGATAACTTTACCTTAGTATTTGAGATCTTGTTGTTCTTACTTTAATTAACAAACTTTGACTGGTAAACTCCATAACTTCACCTTAAACATCAAATGAACCATCTATTTACAACAGTGAGCAAATCAGACTTGATGC</genome_strand>
        <mrna_strand>AGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATCTG..............................................................................................GATTTATCTCACCCCTTTCTGGCAAATTCTATTCAAGGTCAGCTTGTTCCCGTCATGTGATAACTTTACCTTAGTATTTGAGATCTTGTTGTTCTTACTTTAATTAACAAACTTTGACTGGTAAACTCCATAACTTCACCTTAAACATCAAATGAACCATCTATTTACAACAGTGAGCAAATCAGACTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268866" ref_strand="+" ref_description="SGN-E268866 [cLEM-4-B1]">
      <seq>catttccaaccccgaccacttctcttagcaccaggaggattctatgataaagagtggtttgagacgttccttgagatgtcagggccaggcactgtcgatgccttgactcatcatatatataatcttggtgcaggatctgacctcaatctcgtaaacaaaattttaaaccctctgcacttgaataaaattgctgacacattcagtaatcttagtcaaaccattgaaatgaatggtccttggtcttcagcttgggttggagaatctggtggggccttcaataacggaggtcctaatgtgtctaacacctttgtgaacagtttttggtacttggatcagcttgggatggcagccacatatcacactaaagtatattgcaggcagacttttattggtggaaactatgggctccttgacacaagtacatttgtcccaaatcctgattattatagtgcacttctttggcatcggctgatgggaaaaggagttcttgctgttagcaacaatgcatcatcatatctgcgctcgtatgcccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19410" stop="21278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19710" g_stop="19842" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20364" g_stop="20553" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="323" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20642" g_stop="20767" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="449" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20893" g_stop="20978" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="535" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E268866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19710" e_stop="19842"/>
          <exon e_start="20364" e_stop="20553"/>
          <exon e_start="20642" e_stop="20767"/>
          <exon e_start="20893" e_stop="20978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTATGATAAAGAGTGGTTTGAGACGTTCCTTGAGATGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAGGTAAGCTAGCATTAAATTTTATGGGTAGCTTGATACTGTATGAAAGCCTTTATTAGCTTAGAAAATCTAGTGCTAGGATGATCACATCAAATCTAAGGAGTGACAGCGTTTTCTTGGATCTATTTGTTTCTGTTTAAAGTGTTTTTTGCGTCTACTACAAAAATCATTTGTTACTTGTAATGTGGCACTAGCTATTGACATCATTAGGAGGTTGAGAACCATCTAGTAAAAGAGAACTAGTTGGTGGAACGAAATTAGATAAATTCTAATTTATCAATCAACAGTATCATTGACAGCACATTTCATTAACAAAAATGTTAGTATTTGCTTCTGTTAAATTTGAATTATGAGCAGCTGCTCTGATAGATGTATGATTTACTTTATCTATCTTTTCTTGTAATTGTTAGTGTACTGGTCTATTTGAGTATAAGGTTACATTACTACTTGTGTTCTCTAGATTTGTAAGTCAATTTACTCATGTACTTGCTCCATTGAATAAAACCAGAAAATTTCTGTTTCAGGATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTGGTAAATTTCTTGGCTGACTTGATTTATTTTTTATTCAGTAATCAGTTAATTATTTTTGTTTCATGCTTTATCTTGACATGGAATTTAGGTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAGGTGAGACAATAGATTTACCAATCCAAGGTTGATTCTCTTTGCTATTAAAAGGAGCATTTATCCTAATTCTAGTTTTTACGTCCCTAATAATCTGATCCAAAATCATTATACTTGAACGAGCACAGTGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACT</genome_strand>
        <mrna_strand>CATTTCCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTATGATAAAGAGTGGTTTGAGACGTTCCTTGAGATGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG........................................................................................GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG.............................................................................................................................TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687678" ref_strand="+" ref_description="SGN-E687678 [T3_tus_79_G12]">
      <seq>cctttaagaactgtcgatgccttgactcatcatatatataattttggtgcaggatctgacctcaatctcgtaaacaaaattttaaaccctctgcacttgaataaaattgctgacacattcagtaatcttagtcaaaccattgaaatgaatggtccttggtcttcagcttgggttggagaatctggtggggccttcaataacggaggtcctaatgtgtctaacacctttgtgaacagtttttggtacttggatcagcttgggatggcagccacatatcacactaaagtatattgcaggcagacttttattggtggaaactatgggctccttgacacaagtacatttgtcccaaatcctgattattatagtgcacttctttggcatcggctgatgggaaaaggagttcttgctgttagcaacaatgcatcatcatatctgcgctcgtatgcccactgtacaagacatagagcaggtgtaacattacttttgatcaatctaagcaaccaaactcattatggagtcaacatcgaatctagtgtaagcatcacctcgcatgtcaaagagaaatcaaatcacaagagttctttcgtgcaacgtcttaagaaaactatttcatgggttggaaaaaaatcatcagatgttacattatcacgagaagagtaccatctgactccactagatgggaaccttcaaagcagaaccatgctctttgatggaaaaccattacaactcgcagaaaatgggaacatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19496" stop="22643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19791" g_stop="19842" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20364" g_stop="20553" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="242" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20642" g_stop="20767" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="368" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20893" g_stop="20992" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="468" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22060" g_stop="22343" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="752" r_length="284" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E687678" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19791" e_stop="19842"/>
          <exon e_start="20364" e_stop="20553"/>
          <exon e_start="20642" e_stop="20767"/>
          <exon e_start="20893" e_stop="20992"/>
          <exon e_start="22060" e_stop="22343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAGGTAAGCTAGCATTAAATTTTATGGGTAGCTTGATACTGTATGAAAGCCTTTATTAGCTTAGAAAATCTAGTGCTAGGATGATCACATCAAATCTAAGGAGTGACAGCGTTTTCTTGGATCTATTTGTTTCTGTTTAAAGTGTTTTTTGCGTCTACTACAAAAATCATTTGTTACTTGTAATGTGGCACTAGCTATTGACATCATTAGGAGGTTGAGAACCATCTAGTAAAAGAGAACTAGTTGGTGGAACGAAATTAGATAAATTCTAATTTATCAATCAACAGTATCATTGACAGCACATTTCATTAACAAAAATGTTAGTATTTGCTTCTGTTAAATTTGAATTATGAGCAGCTGCTCTGATAGATGTATGATTTACTTTATCTATCTTTTCTTGTAATTGTTAGTGTACTGGTCTATTTGAGTATAAGGTTACATTACTACTTGTGTTCTCTAGATTTGTAAGTCAATTTACTCATGTACTTGCTCCATTGAATAAAACCAGAAAATTTCTGTTTCAGGATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTGGTAAATTTCTTGGCTGACTTGATTTATTTTTTATTCAGTAATCAGTTAATTATTTTTGTTTCATGCTTTATCTTGACATGGAATTTAGGTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAGGTGAGACAATAGATTTACCAATCCAAGGTTGATTCTCTTTGCTATTAAAAGGAGCATTTATCCTAATTCTAGTTTTTACGTCCCTAATAATCTGATCCAAAATCATTATACTTGAACGAGCACAGTGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGAGTAAGAGCCCTTCACAGAAAGTAATTTGATGAGTTCCTGAAAGGATGTCTTAAACTTACATGCGTAATCACCGTTCTATAAACCTTGTTCATCGTCAATAGTAATATCATTTCTTCTTGTGTTTCATTGAGTCCATCCACTTCAGGTCTTCAATCTAATTGTTTGTAGAGAGTAAAACGTCACAGCTTCTTTTAGTTTGGGAGAAAAGATGCAATGATAAACAACTATATTAGCTTTGCATAGTCAGGTCAAGCCCAGATTAAGGAGGGTTGCGGCAGGTTGGTTATTAACATAAGAATAGTCATAATATACTGAAACCTCTAGATATTGAACATGGTATCCATTTTAGTATTAAATAGGCAAGATGTCCCATCACATCCCTGTCTGAGTGTGAGAGTTTATGCTTAGTTCCAACCATGAAAGGCTCATCAGTAGAAAATTATTAGCATTGGCCGAATTGAGCGAAAATGGACCTATCAGATTCGTATAGAACCAAACTAAATAGTTTGAATAGAACGGAGATCGGAATGATATAGGAGATTCATGTAAGATTGAGGTGTACTTAATTGGTTGATTGATTGATAACGAGGCAAGCTGTTTTTCTTGATTATTATAATTTAGACCATAAATTGTAACTTATAAAGTCCATATGCTTAAAACTACTTCAGGAGGAGTAAAAATAGCAAGGTATTGTGTTTAAATGCTTCGATTGTTATAATTAAAGTTGATGCAATTCAGTCTCAACTAGTTTTTTCTTTTATAAGATGATGGCTCTCCCTTGTGCTTAGTTTGGCAATCGAACTTACCACTCTTGGATATGCTTCTTATGTGTTGCTTACGATGAATGAGTCAATCAAAATGGAGGATAGAACACCTTTCTTATACAATTTTGTCGCATTTTGTTGAAGCCAGTTTCAACTCACTTATATTCCCATTTTCTCTTTAGCCATACTGCAGTAATTTGGTTATTCTTGATTAAATATTCGATAAAGCCTTCATATAAACATGCAATGATTTGCATTTCCCTGCTAAAACCTTTCAATGTTACTGGTGTTCCCTTTGTGCAGGCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCC</genome_strand>
        <mrna_strand>CCTTTAAGAACTGTCGATGCCTTGACTCATCATATATATAATTTTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG........................................................................................GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG.............................................................................................................................TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAAAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTTGATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320297" ref_strand="+" ref_description="SGN-E320297 [cTOB-21-D14]">
      <seq>caggcactgtcgatgccttgactcatcatatatataatcttggtgcaggatctgacctcaatctcgtaaacaaaattttaaaccctctgcacttgaataaaattgctgacacattcagtaatcttagtcaaaccattgaaatgaatggtccttggtcttcagcttgggttggagaatctggtggggccttcaataacggaggtcctaatgtgtctaacacctttgtgaacagtttttggtacttggatcagcttgggatggcagccacatatcacactaaagtatattgcaggcagacttttattggtggaaactatgggctccttgacacaagtacatttgtcccaaatcctgattattatagtgcacttctttggcatcggctgatgggaaaaggagttcttgctgttagcaacaatgcatcatcatatctgcgctcgtatgcccactgtacaagacatagagcaggtgtaacattacttttgatcaatctaagcaaccaaactcattatggagtcaacatcgaatctagtgtaagcatcacctcgcatgtcaaagagaaatcaaatcacaagagttctttcgtgcaacgtcttaagaaaactatttcatgggtgggaaagaaatcatcagatgttacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19495" stop="22540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19795" g_stop="19842" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20364" g_stop="20553" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="238" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20642" g_stop="20767" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="364" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20893" g_stop="20992" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="464" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22060" g_stop="22240" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="645" r_length="181" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E320297" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19795" e_stop="19842"/>
          <exon e_start="20364" e_stop="20553"/>
          <exon e_start="20642" e_stop="20767"/>
          <exon e_start="20893" e_stop="20992"/>
          <exon e_start="22060" e_stop="22240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAGGTAAGCTAGCATTAAATTTTATGGGTAGCTTGATACTGTATGAAAGCCTTTATTAGCTTAGAAAATCTAGTGCTAGGATGATCACATCAAATCTAAGGAGTGACAGCGTTTTCTTGGATCTATTTGTTTCTGTTTAAAGTGTTTTTTGCGTCTACTACAAAAATCATTTGTTACTTGTAATGTGGCACTAGCTATTGACATCATTAGGAGGTTGAGAACCATCTAGTAAAAGAGAACTAGTTGGTGGAACGAAATTAGATAAATTCTAATTTATCAATCAACAGTATCATTGACAGCACATTTCATTAACAAAAATGTTAGTATTTGCTTCTGTTAAATTTGAATTATGAGCAGCTGCTCTGATAGATGTATGATTTACTTTATCTATCTTTTCTTGTAATTGTTAGTGTACTGGTCTATTTGAGTATAAGGTTACATTACTACTTGTGTTCTCTAGATTTGTAAGTCAATTTACTCATGTACTTGCTCCATTGAATAAAACCAGAAAATTTCTGTTTCAGGATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTGGTAAATTTCTTGGCTGACTTGATTTATTTTTTATTCAGTAATCAGTTAATTATTTTTGTTTCATGCTTTATCTTGACATGGAATTTAGGTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAGGTGAGACAATAGATTTACCAATCCAAGGTTGATTCTCTTTGCTATTAAAAGGAGCATTTATCCTAATTCTAGTTTTTACGTCCCTAATAATCTGATCCAAAATCATTATACTTGAACGAGCACAGTGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGAGTAAGAGCCCTTCACAGAAAGTAATTTGATGAGTTCCTGAAAGGATGTCTTAAACTTACATGCGTAATCACCGTTCTATAAACCTTGTTCATCGTCAATAGTAATATCATTTCTTCTTGTGTTTCATTGAGTCCATCCACTTCAGGTCTTCAATCTAATTGTTTGTAGAGAGTAAAACGTCACAGCTTCTTTTAGTTTGGGAGAAAAGATGCAATGATAAACAACTATATTAGCTTTGCATAGTCAGGTCAAGCCCAGATTAAGGAGGGTTGCGGCAGGTTGGTTATTAACATAAGAATAGTCATAATATACTGAAACCTCTAGATATTGAACATGGTATCCATTTTAGTATTAAATAGGCAAGATGTCCCATCACATCCCTGTCTGAGTGTGAGAGTTTATGCTTAGTTCCAACCATGAAAGGCTCATCAGTAGAAAATTATTAGCATTGGCCGAATTGAGCGAAAATGGACCTATCAGATTCGTATAGAACCAAACTAAATAGTTTGAATAGAACGGAGATCGGAATGATATAGGAGATTCATGTAAGATTGAGGTGTACTTAATTGGTTGATTGATTGATAACGAGGCAAGCTGTTTTTCTTGATTATTATAATTTAGACCATAAATTGTAACTTATAAAGTCCATATGCTTAAAACTACTTCAGGAGGAGTAAAAATAGCAAGGTATTGTGTTTAAATGCTTCGATTGTTATAATTAAAGTTGATGCAATTCAGTCTCAACTAGTTTTTTCTTTTATAAGATGATGGCTCTCCCTTGTGCTTAGTTTGGCAATCGAACTTACCACTCTTGGATATGCTTCTTATGTGTTGCTTACGATGAATGAGTCAATCAAAATGGAGGATAGAACACCTTTCTTATACAATTTTGTCGCATTTTGTTGAAGCCAGTTTCAACTCACTTATATTCCCATTTTCTCTTTAGCCATACTGCAGTAATTTGGTTATTCTTGATTAAATATTCGATAAAGCCTTCATATAAACATGCAATGATTTGCATTTCCCTGCTAAAACCTTTCAATGTTACTGGTGTTCCCTTTGTGCAGGCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTAT</genome_strand>
        <mrna_strand>CAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG........................................................................................GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG.............................................................................................................................TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTGGGAAAGAAATCATCAGATGTTACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320107" ref_strand="+" ref_description="SGN-E320107 [cTOB-21-D15]">
      <seq>caggcactgtcgatgccttgactcatcatatatataatcttggtgcaggatctgacctcaatctcgtaaacaaaattttaaaccctctgcacttgaataaaattgctgacacattcagtaatcttagtcaaaccattgaaatgaatggtccttggtcttcagcttgggttggagaatctggtggggccttcaataacggaggtcctaatgtgtctaacacctttgtgaacagtttttggtacttggatcagcttgggatggcagccacatatcacactaaagtatattgcaggcagacttttattggtggaaactatgggctccttgacacaagtacatttgtcccaaatcctgattattatagtgcacttctttggcatcggctgatgggaaaaggagttcttgctgttagcaacaatgcatcatcatatctgcgctcgtatgcccactgtacaagacatagagcaggtgtaacattacttttgatcaatctaagcaaccaaactcattatggagtcaacatcgaatctagtgtaagcatcacctcgcatgtcaaagagaaaatcaatcacaagagttctttcgtgcaacgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19495" stop="22491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19795" g_stop="19842" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20364" g_stop="20553" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="238" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20642" g_stop="20767" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="364" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20893" g_stop="20992" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="464" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22060" g_stop="22191" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="596" r_length="132" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E320107" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19795" e_stop="19842"/>
          <exon e_start="20364" e_stop="20553"/>
          <exon e_start="20642" e_stop="20767"/>
          <exon e_start="20893" e_stop="20992"/>
          <exon e_start="22060" e_stop="22191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAGGTAAGCTAGCATTAAATTTTATGGGTAGCTTGATACTGTATGAAAGCCTTTATTAGCTTAGAAAATCTAGTGCTAGGATGATCACATCAAATCTAAGGAGTGACAGCGTTTTCTTGGATCTATTTGTTTCTGTTTAAAGTGTTTTTTGCGTCTACTACAAAAATCATTTGTTACTTGTAATGTGGCACTAGCTATTGACATCATTAGGAGGTTGAGAACCATCTAGTAAAAGAGAACTAGTTGGTGGAACGAAATTAGATAAATTCTAATTTATCAATCAACAGTATCATTGACAGCACATTTCATTAACAAAAATGTTAGTATTTGCTTCTGTTAAATTTGAATTATGAGCAGCTGCTCTGATAGATGTATGATTTACTTTATCTATCTTTTCTTGTAATTGTTAGTGTACTGGTCTATTTGAGTATAAGGTTACATTACTACTTGTGTTCTCTAGATTTGTAAGTCAATTTACTCATGTACTTGCTCCATTGAATAAAACCAGAAAATTTCTGTTTCAGGATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTGGTAAATTTCTTGGCTGACTTGATTTATTTTTTATTCAGTAATCAGTTAATTATTTTTGTTTCATGCTTTATCTTGACATGGAATTTAGGTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAGGTGAGACAATAGATTTACCAATCCAAGGTTGATTCTCTTTGCTATTAAAAGGAGCATTTATCCTAATTCTAGTTTTTACGTCCCTAATAATCTGATCCAAAATCATTATACTTGAACGAGCACAGTGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGAGTAAGAGCCCTTCACAGAAAGTAATTTGATGAGTTCCTGAAAGGATGTCTTAAACTTACATGCGTAATCACCGTTCTATAAACCTTGTTCATCGTCAATAGTAATATCATTTCTTCTTGTGTTTCATTGAGTCCATCCACTTCAGGTCTTCAATCTAATTGTTTGTAGAGAGTAAAACGTCACAGCTTCTTTTAGTTTGGGAGAAAAGATGCAATGATAAACAACTATATTAGCTTTGCATAGTCAGGTCAAGCCCAGATTAAGGAGGGTTGCGGCAGGTTGGTTATTAACATAAGAATAGTCATAATATACTGAAACCTCTAGATATTGAACATGGTATCCATTTTAGTATTAAATAGGCAAGATGTCCCATCACATCCCTGTCTGAGTGTGAGAGTTTATGCTTAGTTCCAACCATGAAAGGCTCATCAGTAGAAAATTATTAGCATTGGCCGAATTGAGCGAAAATGGACCTATCAGATTCGTATAGAACCAAACTAAATAGTTTGAATAGAACGGAGATCGGAATGATATAGGAGATTCATGTAAGATTGAGGTGTACTTAATTGGTTGATTGATTGATAACGAGGCAAGCTGTTTTTCTTGATTATTATAATTTAGACCATAAATTGTAACTTATAAAGTCCATATGCTTAAAACTACTTCAGGAGGAGTAAAAATAGCAAGGTATTGTGTTTAAATGCTTCGATTGTTATAATTAAAGTTGATGCAATTCAGTCTCAACTAGTTTTTTCTTTTATAAGATGATGGCTCTCCCTTGTGCTTAGTTTGGCAATCGAACTTACCACTCTTGGATATGCTTCTTATGTGTTGCTTACGATGAATGAGTCAATCAAAATGGAGGATAGAACACCTTTCTTATACAATTTTGTCGCATTTTGTTGAAGCCAGTTTCAACTCACTTATATTCCCATTTTCTCTTTAGCCATACTGCAGTAATTTGGTTATTCTTGATTAAATATTCGATAAAGCCTTCATATAAACATGCAATGATTTGCATTTCCCTGCTAAAACCTTTCAATGTTACTGGTGTTCCCTTTGTGCAGGCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTT</genome_strand>
        <mrna_strand>CAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG........................................................................................GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG.............................................................................................................................TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAAATCAATCACAAGAGTTCTTTCGTGCAACGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322096" ref_strand="+" ref_description="SGN-E322096 [cTOB-29-H20]">
      <seq>caggcactgtcgatgccttgactcatcatatatataatcttggtgcaggatctgacctcaatctcgtaaacaaaattttaaaccctctgcacttgaataaaattgctgacacattcagtaatcttagtcaaaccattgaaatgaatggtccttggtcttcagcttgggttggagaatctggtggggccttcaataacggaggtcctaatgtgtctaacacctttgtgaacagtttttggtacttggatcagcttgggatggcagccacatatcacactaaagtatattgcaggcagacttttattggtggaaactatgggctccttgacacaagtacatttgtcccaaatcctgattattatagtgcacttctttggcatcggctgatgggaaaaggagttcttgctgttagcaacaatgcatcatcatanctgcgctcgtatgcccactgtacaagacatagagcaggtggaacattacttttgatcaatctaagcaaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19495" stop="22399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19795" g_stop="19842" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20364" g_stop="20553" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="238" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20642" g_stop="20767" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="364" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20893" g_stop="20992" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="464" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22060" g_stop="22099" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="504" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E322096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19795" e_stop="19842"/>
          <exon e_start="20364" e_stop="20553"/>
          <exon e_start="20642" e_stop="20767"/>
          <exon e_start="20893" e_stop="20992"/>
          <exon e_start="22060" e_stop="22099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAGGTAAGCTAGCATTAAATTTTATGGGTAGCTTGATACTGTATGAAAGCCTTTATTAGCTTAGAAAATCTAGTGCTAGGATGATCACATCAAATCTAAGGAGTGACAGCGTTTTCTTGGATCTATTTGTTTCTGTTTAAAGTGTTTTTTGCGTCTACTACAAAAATCATTTGTTACTTGTAATGTGGCACTAGCTATTGACATCATTAGGAGGTTGAGAACCATCTAGTAAAAGAGAACTAGTTGGTGGAACGAAATTAGATAAATTCTAATTTATCAATCAACAGTATCATTGACAGCACATTTCATTAACAAAAATGTTAGTATTTGCTTCTGTTAAATTTGAATTATGAGCAGCTGCTCTGATAGATGTATGATTTACTTTATCTATCTTTTCTTGTAATTGTTAGTGTACTGGTCTATTTGAGTATAAGGTTACATTACTACTTGTGTTCTCTAGATTTGTAAGTCAATTTACTCATGTACTTGCTCCATTGAATAAAACCAGAAAATTTCTGTTTCAGGATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTGGTAAATTTCTTGGCTGACTTGATTTATTTTTTATTCAGTAATCAGTTAATTATTTTTGTTTCATGCTTTATCTTGACATGGAATTTAGGTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAGGTGAGACAATAGATTTACCAATCCAAGGTTGATTCTCTTTGCTATTAAAAGGAGCATTTATCCTAATTCTAGTTTTTACGTCCCTAATAATCTGATCCAAAATCATTATACTTGAACGAGCACAGTGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGAGTAAGAGCCCTTCACAGAAAGTAATTTGATGAGTTCCTGAAAGGATGTCTTAAACTTACATGCGTAATCACCGTTCTATAAACCTTGTTCATCGTCAATAGTAATATCATTTCTTCTTGTGTTTCATTGAGTCCATCCACTTCAGGTCTTCAATCTAATTGTTTGTAGAGAGTAAAACGTCACAGCTTCTTTTAGTTTGGGAGAAAAGATGCAATGATAAACAACTATATTAGCTTTGCATAGTCAGGTCAAGCCCAGATTAAGGAGGGTTGCGGCAGGTTGGTTATTAACATAAGAATAGTCATAATATACTGAAACCTCTAGATATTGAACATGGTATCCATTTTAGTATTAAATAGGCAAGATGTCCCATCACATCCCTGTCTGAGTGTGAGAGTTTATGCTTAGTTCCAACCATGAAAGGCTCATCAGTAGAAAATTATTAGCATTGGCCGAATTGAGCGAAAATGGACCTATCAGATTCGTATAGAACCAAACTAAATAGTTTGAATAGAACGGAGATCGGAATGATATAGGAGATTCATGTAAGATTGAGGTGTACTTAATTGGTTGATTGATTGATAACGAGGCAAGCTGTTTTTCTTGATTATTATAATTTAGACCATAAATTGTAACTTATAAAGTCCATATGCTTAAAACTACTTCAGGAGGAGTAAAAATAGCAAGGTATTGTGTTTAAATGCTTCGATTGTTATAATTAAAGTTGATGCAATTCAGTCTCAACTAGTTTTTTCTTTTATAAGATGATGGCTCTCCCTTGTGCTTAGTTTGGCAATCGAACTTACCACTCTTGGATATGCTTCTTATGTGTTGCTTACGATGAATGAGTCAATCAAAATGGAGGATAGAACACCTTTCTTATACAATTTTGTCGCATTTTGTTGAAGCCAGTTTCAACTCACTTATATTCCCATTTTCTCTTTAGCCATACTGCAGTAATTTGGTTATTCTTGATTAAATATTCGATAAAGCCTTCATATAAACATGCAATGATTTGCATTTCCCTGCTAAAACCTTTCAATGTTACTGGTGTTCCCTTTGTGCAGGCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAA</genome_strand>
        <mrna_strand>CAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG........................................................................................GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG.............................................................................................................................TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATANCTGCGCTCGTATGCCCACTGTACAAGACATAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTGGAACATTACTTTTGATCAATCTAAGCAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320540" ref_strand="+" ref_description="SGN-E320540 [cTOB-22-C14]">
      <seq>caggcactgtcgatgccttgactcatcatatatataatcttggtgcaggatctgacctcaatctcgtaaacaaaattttaaaccctctgcacttgaataaaattgctgacacattcagtaatcttagtcaaaccattgaaatgaatggtccttggtcttcagcttgggttggagaatctggtggggccttcaataacggaggtcctaatgtgtctaacacctttgtgaacagtttttggtacttggatcagcttgggatggcagccacatatcacactaaagtatattgcaggcagacttttattggtggaaactatgggctccttgacacaagtacatttgtcccaaatcctgattattatagtgcacttctttggcatcggctgatgggaaaaggagttcttgctgttagcaacaatgcatcatcatatctgcgctcgtatgcccactgtacaagacatagagcaggtgtaacattacttttgatcaatctaagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19495" stop="22395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19795" g_stop="19842" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20364" g_stop="20553" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="238" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20642" g_stop="20767" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="364" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20893" g_stop="20992" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="464" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22060" g_stop="22095" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="500" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E320540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19795" e_stop="19842"/>
          <exon e_start="20364" e_stop="20553"/>
          <exon e_start="20642" e_stop="20767"/>
          <exon e_start="20893" e_stop="20992"/>
          <exon e_start="22060" e_stop="22095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAGGTAAGCTAGCATTAAATTTTATGGGTAGCTTGATACTGTATGAAAGCCTTTATTAGCTTAGAAAATCTAGTGCTAGGATGATCACATCAAATCTAAGGAGTGACAGCGTTTTCTTGGATCTATTTGTTTCTGTTTAAAGTGTTTTTTGCGTCTACTACAAAAATCATTTGTTACTTGTAATGTGGCACTAGCTATTGACATCATTAGGAGGTTGAGAACCATCTAGTAAAAGAGAACTAGTTGGTGGAACGAAATTAGATAAATTCTAATTTATCAATCAACAGTATCATTGACAGCACATTTCATTAACAAAAATGTTAGTATTTGCTTCTGTTAAATTTGAATTATGAGCAGCTGCTCTGATAGATGTATGATTTACTTTATCTATCTTTTCTTGTAATTGTTAGTGTACTGGTCTATTTGAGTATAAGGTTACATTACTACTTGTGTTCTCTAGATTTGTAAGTCAATTTACTCATGTACTTGCTCCATTGAATAAAACCAGAAAATTTCTGTTTCAGGATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTGGTAAATTTCTTGGCTGACTTGATTTATTTTTTATTCAGTAATCAGTTAATTATTTTTGTTTCATGCTTTATCTTGACATGGAATTTAGGTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAGGTGAGACAATAGATTTACCAATCCAAGGTTGATTCTCTTTGCTATTAAAAGGAGCATTTATCCTAATTCTAGTTTTTACGTCCCTAATAATCTGATCCAAAATCATTATACTTGAACGAGCACAGTGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGAGTAAGAGCCCTTCACAGAAAGTAATTTGATGAGTTCCTGAAAGGATGTCTTAAACTTACATGCGTAATCACCGTTCTATAAACCTTGTTCATCGTCAATAGTAATATCATTTCTTCTTGTGTTTCATTGAGTCCATCCACTTCAGGTCTTCAATCTAATTGTTTGTAGAGAGTAAAACGTCACAGCTTCTTTTAGTTTGGGAGAAAAGATGCAATGATAAACAACTATATTAGCTTTGCATAGTCAGGTCAAGCCCAGATTAAGGAGGGTTGCGGCAGGTTGGTTATTAACATAAGAATAGTCATAATATACTGAAACCTCTAGATATTGAACATGGTATCCATTTTAGTATTAAATAGGCAAGATGTCCCATCACATCCCTGTCTGAGTGTGAGAGTTTATGCTTAGTTCCAACCATGAAAGGCTCATCAGTAGAAAATTATTAGCATTGGCCGAATTGAGCGAAAATGGACCTATCAGATTCGTATAGAACCAAACTAAATAGTTTGAATAGAACGGAGATCGGAATGATATAGGAGATTCATGTAAGATTGAGGTGTACTTAATTGGTTGATTGATTGATAACGAGGCAAGCTGTTTTTCTTGATTATTATAATTTAGACCATAAATTGTAACTTATAAAGTCCATATGCTTAAAACTACTTCAGGAGGAGTAAAAATAGCAAGGTATTGTGTTTAAATGCTTCGATTGTTATAATTAAAGTTGATGCAATTCAGTCTCAACTAGTTTTTTCTTTTATAAGATGATGGCTCTCCCTTGTGCTTAGTTTGGCAATCGAACTTACCACTCTTGGATATGCTTCTTATGTGTTGCTTACGATGAATGAGTCAATCAAAATGGAGGATAGAACACCTTTCTTATACAATTTTGTCGCATTTTGTTGAAGCCAGTTTCAACTCACTTATATTCCCATTTTCTCTTTAGCCATACTGCAGTAATTTGGTTATTCTTGATTAAATATTCGATAAAGCCTTCATATAAACATGCAATGATTTGCATTTCCCTGCTAAAACCTTTCAATGTTACTGGTGTTCCCTTTGTGCAGGCAGGTGTAACATTACTTTTGATCAATCTAAGCAAC</genome_strand>
        <mrna_strand>CAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG........................................................................................GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG.............................................................................................................................TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTGTAACATTACTTTTGATCAATCTAAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374806" ref_strand="+" ref_description="SGN-E374806 [TUS-14-L22](-)">
      <seq>aacaatgcatcatcatatctgcgctcgtatgccccctgtacaaaacatagagcaggtgtaacattacttttgatcaatttaagcaaccaaactcattatggagtcaacatcgaatctagtgtaagcatcccctcgcatgtcaaaaagaaatcaaatcacaagagttctttcgtgcaacgtcttaaaaaaactatttcatgggttggaaaaaaatcatcaaatgttacattatcacgaaaaaagtaccatctgactccactaaatgggaaccttcaaagcagaaccatgctcttgaatggaaaacccttacaactcgcaaaaaatgggaacatcccaagtttgtctccagtccttgtaaagctgaagtctccaatatcaatttcccccttgtccatcaaattcatagtattcccctacttaagctctcctgtttgtacataaaattaggaaatacttttgtttgatagttatcatctggcactcttatctattcccaacttagtaattgtataattgctacaataaactgagctgccaaattttatgcagttatgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20642" stop="28578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20942" g_stop="20992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067">
            <donor d_prob="0.906" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22060" g_stop="22563" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="555" r_length="504" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22564" i_stop="24608" i_length="2045">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24609" g_stop="24640" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="587" r_length="32" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E374806" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20942" e_stop="20992"/>
          <exon e_start="22060" e_stop="22563"/>
          <exon e_start="24609" e_stop="24640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGAGTAAGAGCCCTTCACAGAAAGTAATTTGATGAGTTCCTGAAAGGATGTCTTAAACTTACATGCGTAATCACCGTTCTATAAACCTTGTTCATCGTCAATAGTAATATCATTTCTTCTTGTGTTTCATTGAGTCCATCCACTTCAGGTCTTCAATCTAATTGTTTGTAGAGAGTAAAACGTCACAGCTTCTTTTAGTTTGGGAGAAAAGATGCAATGATAAACAACTATATTAGCTTTGCATAGTCAGGTCAAGCCCAGATTAAGGAGGGTTGCGGCAGGTTGGTTATTAACATAAGAATAGTCATAATATACTGAAACCTCTAGATATTGAACATGGTATCCATTTTAGTATTAAATAGGCAAGATGTCCCATCACATCCCTGTCTGAGTGTGAGAGTTTATGCTTAGTTCCAACCATGAAAGGCTCATCAGTAGAAAATTATTAGCATTGGCCGAATTGAGCGAAAATGGACCTATCAGATTCGTATAGAACCAAACTAAATAGTTTGAATAGAACGGAGATCGGAATGATATAGGAGATTCATGTAAGATTGAGGTGTACTTAATTGGTTGATTGATTGATAACGAGGCAAGCTGTTTTTCTTGATTATTATAATTTAGACCATAAATTGTAACTTATAAAGTCCATATGCTTAAAACTACTTCAGGAGGAGTAAAAATAGCAAGGTATTGTGTTTAAATGCTTCGATTGTTATAATTAAAGTTGATGCAATTCAGTCTCAACTAGTTTTTTCTTTTATAAGATGATGGCTCTCCCTTGTGCTTAGTTTGGCAATCGAACTTACCACTCTTGGATATGCTTCTTATGTGTTGCTTACGATGAATGAGTCAATCAAAATGGAGGATAGAACACCTTTCTTATACAATTTTGTCGCATTTTGTTGAAGCCAGTTTCAACTCACTTATATTCCCATTTTCTCTTTAGCCATACTGCAGTAATTTGGTTATTCTTGATTAAATATTCGATAAAGCCTTCATATAAACATGCAATGATTTGCATTTCCCTGCTAAAACCTTTCAATGTTACTGGTGTTCCCTTTGTGCAGGCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCCAAGTTTGTCTCCAGTCCTTGTAAAGCTGAAGTCTCCAATATCAATTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCTACTTAAGCTCTCCTGTTTGTACATAGAATTAGGAAATACTTTTGTCTGATAGTTATCATCTGGCACTCTTATCTATTCACAACTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCCAAATTTTATGCAGTTATGTATTATATGGCTAGGTAAATCCATTTAGTGTTTCCAGGAACATGTATCTTGTAATGTAAGTTGTTTATCAACTTGCAAAATTAGATGTAATTTAGTTTCCTCTTGGTGCTTTTGGATCTTCCCATGGGACAAACTGAACAGTTTATATCTAGACTATTATTGCTGTCTAGCAAACATTTTATATCCTCTATTAGGATGTTGATATTAAAAGAAGAGAGTACATTTTAAAAGAAGTTTGACAATACAACTCTTATAAGTTTAATAGTTGACTCAGGAGGTACTCGATGAATGGTTGATTGGAATTTATAAAAAAAATGGATGTTAGCATAAAGTACATTCAACCATGTCTTCACTGATCAAACAGTAATCTTATTTGTGTTGCACGTTATTTCTCTACAATGGTCGAGTAGTAATTTTGTCGTCCTGCCTTCCAAATACCATACAATTAACTTGGTTTACTGTCATAGAATATTGTAAAATTATAATACAAAGTAACATAAAATTACAGAGAGAAGCATTTGTGAAAAACTCAAGAATAGCTGAAATGATAAACTGAAGTTAACGTCTGAAAGCTCATTAATAGGTTCCCACAACAGATGTCTACTGGTTTACTTTCCAAGCAAGCGCCGAATCCTCCGGTTGGCCCCTTGAACTCTGGTGCCAAGCTCATCAACATCCTGTTCAGTATGATCCAATGCATCTTTATGCCTGTAATATCCAACAGCGTATACAGAATTCTTATTGTGCTCAAGAATGGTTTAAATGAAGGGACATGAACAGTGAGAATTCATACAGTCGAAATCAACTTGCTTGGGATTGAGGCATAGTTGTTACATATACATATTTTTTAAGAAGCGACTTAGTAGCACAGTACTTTAACAGTGACAGTTCAATAAGGAGATGGTGGAAGAGGGAGAGAACAAGAAAGGAGAGATTGGAATCTGCTTAATAAATTTTATAACACTAACCTCTCAATTTCAGATCCCATGTCAACAGCCATATTCTTGAGCTCCCCCAACAGATCGCTGAGTTCTGACAGTCCATCATCTTGCTTGGCTTTCTCAGCCTGTCAAATGTTCAAATGAAACAGTAGAATCAGCTAACTGATATTTGTCATATATTATATCATTCATATTCATGAAATGAGCAAATAAAGAAAGGAGGAGAAAAAATGAGGAGAATACACATGCTCAATCCTCAATCTGGTAGTGTAGAATGAAAATGTTTCATCACCACAAGGACTTAAAATTTATGACAGAACCAGTAAGAATCGCCTCATAGGTCCAACACCCAGCATAACAAAGAACACAAACTTTTCAAGGACACTAAGGTAATGCAGTCTGCAAGGATCACAGTGTTTTACTATTCTTGCTGTTTCACTTTTGGTGTTCCAAAAGGAAACTTCTATTAGAAATTCTCCAAACATTAGGCCACATTTGAAAATGGAATATGGCTCTTTCTAGAAGTAAATCTTCCTACAAACAATGGAATATAATGACGTAACTCTAGAATTAAAAAGAAAAGAGAAATGAACATGAGTAATTTGTAATTTACTCTTAAACATACTGGAAAATTGCATCTTGAGCGTTAGTGAGAAACATTAGATGAAAAGGTGTCGAAATGCTAGAAAAGTGGACGGTGAAGTGAGGAAAGATGCAGAAAAGAAAAGGTGACCAAAATTAATCAATAGTGTCCTGCATGTTTGATAGTTGCAGGTTCCGGGTGTACTTGGATCTGAAGAACTTCCTTATTAAATTTTTTGTTTCTTCGAGGAGAATTGTAACAGTATTCTCTATTTTGTCCCGAGTCACATGAACATACCTCAACTTTCTGCATTGCATTTGTAGGCTCTGGGTGTGGTGTCCTTGAACTTGACCTTGCCTTGGGTGCAGAGTTCAATCCTAATTTCTCCCTCTGCTCCAAGTGGTTGCCCCTTCTTTGAACTGGATCATCTGACACTGTGCACATTAACAGAGTATCAAATTAGCTATCAGTGTCAGTTGACTCAAAACCCATCCCTTTTCCCTAACGTTCTTCAAATAATAGTAAATGAAAAAGAAGAACAAAAATAAAATGAA</genome_strand>
        <mrna_strand>AACAATGCATCATCATATCTGCGCTCGTATGCCCCCTGTACAAAACATAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTGTAACATTACTTTTGATCAATTTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCCCCTCGCATGTCAAAAAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAAAAAACTATTTCATGGGTTGGAAAAAAATCATCAAATGTTACATTATCACGAAAAAAGTACCATCTGACTCCACTAAATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCCTTACAACTCGCAAAAAATGGGAACATCCCAAGTTTGTCTCCAGTCCTTGTAAAGCTGAAGTCTCCAATATCAATTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCTACTTAAGCTCTCCTGTTTGTACATAAAATTAGGAAATACTTTTGTTTGATAGTTATCATCTGGCACTCTTATCTATTCCCAACTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCCAAATTTTATGCAGTTATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354310" ref_strand="+" ref_description="SGN-E354310 [cTOS-16-J22]">
      <seq>aagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggactgtcagaactcagcgatctgttgggggagctcaagaatatggctgttgacatgggatctgaaattgagaggcataaagatgcattggatcatactgaacaggatgttgatgagcttggcaccagagttcaaggggccaaccggaggattcggcgcttgcttggaaagtaaaccagtagacatctgttgtgggaacctattaatgagctttcagacgttaacttcagtttatcatttcagctattcttgagtttttcacaaatgcttctctctgtaattttatgttactttgtattataattttacaatattctatgacagtaaaccaagttaattgtatggtatttggaaggcaggacgacaaaattactactcgaccattgtagagaaataacgtgcaacacaaataagattactgtttgatcagtgaagacatggttgaatgtactttatgctaacatccattttttttataaattccaatcaaccattcatcgagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24824" stop="22541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24649" g_stop="24645" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24520" g_stop="24384" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="142" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23628" g_stop="23531" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="240" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23270" g_stop="22844" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="667" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E354310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24649" e_stop="24645"/>
          <exon e_start="24520" e_stop="24384"/>
          <exon e_start="23628" e_stop="23531"/>
          <exon e_start="23270" e_stop="22844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAGGTTAGTGTTATAAAATTTATTAAGCAGATTCCAATCTCTCCTTTCTTGTTCTCTCCCTCTTCCACCATCTCCTTATTGAACTGTCACTGTTAAAGTACTGTGCTACTAAGTCGCTTCTTAAAAAATATGTATATGTAACAACTATGCCTCAATCCCAAGCAAGTTGATTTCGACTGTATGAATTCTCACTGTTCATGTCCCTTCATTTAAACCATTCTTGAGCACAATAAGAATTCTGTATACGCTGTTGGATATTACAGGCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGATCAGTGAAGACATGGTTGAATGTACTTTATGCTAACATCCATTTTTTTTATAAATTCCAATCAACCATTCATCGA</genome_strand>
        <mrna_strand>AAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG....................................................................................................................................................................................................................................................................GCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGATCAGTGAAGACATGGTTGAATGTACTTTATGCTAACATCCATTTTTTTTATAAATTCCAATCAACCATTCATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369844" ref_strand="+" ref_description="SGN-E369844 [TUS-25-O13](-)">
      <seq>aaaagccaagcaagataatggactgtcagaactcagcgatctgttgggggagctcaagaatatggctgttgacatgggatctgaaattgagaggcataaagatgcattggatcatactgaacaggatgttgatgagcttggcaccagagttcaaggggccaaccggaggattcggcgcttgcttggaaagtaaaccagtagacatctgttgtgggaacctattaatgagctttcagacgttaacttcagtttatcatttcagctattcttgagtttttcacaaatgcttctctctgtaattttatgttactttgtattataattttacaatattctatgacagtaaaccaagttaattgtatggtatttggaaggcaggacgacaaaattactactcgaccattgtagagaaataacgtgcaacacaaataagattactgtttgatcagtgaagacatggttgaatgtactttatgctaacatccattttttttataaattccaatcaaccattcatcgaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23922" stop="22541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23623" g_stop="23531" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23270" g_stop="22844" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="520" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="521" polyA_stop="533"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E369844" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23623" e_stop="23531"/>
          <exon e_start="23270" e_stop="22844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAGGTTAGTGTTATAAAATTTATTAAGCAGATTCCAATCTCTCCTTTCTTGTTCTCTCCCTCTTCCACCATCTCCTTATTGAACTGTCACTGTTAAAGTACTGTGCTACTAAGTCGCTTCTTAAAAAATATGTATATGTAACAACTATGCCTCAATCCCAAGCAAGTTGATTTCGACTGTATGAATTCTCACTGTTCATGTCCCTTCATTTAAACCATTCTTGAGCACAATAAGAATTCTGTATACGCTGTTGGATATTACAGGCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGATCAGTGAAGACATGGTTGAATGTACTTTATGCTAACATCCATTTTTTTTATAAATTCCAATCAACCATTCATCGA</genome_strand>
        <mrna_strand>AAAAGCCAAGCAAGATAATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG....................................................................................................................................................................................................................................................................GCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGATCAGTGAAGACATGGTTGAATGTACTTTATGCTAACATCCATTTTTTTTATAAATTCCAATCAACCATTCATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354159" ref_strand="+" ref_description="SGN-E354159 [cTOS-16-P18]">
      <seq>aagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggactgtcagaactcagcgatctgttgggggagctcaagaatatggctgttgacatgggatctgaaattgagaggcataaagatgcattggatcatactgaacaggatgttgatgagcttggcaccagagttcaaggggccaaccggaggattcggcgcttgcttggaaagtaaaccagtagacatctgttgtgggaacctattaatgagctttcagacgttaacttcagtttatcatttcagctattcttgagtttttcacaaatgcttctctctgtaattttatgttactttgtattataattttacaatattctatgacagtaaaccaagttaattgtatggtatttggaaggcaggacgacaaaattactactcgaccattgtagagaaataacgtgcaacacaaataagattactgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24824" stop="22618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24649" g_stop="24645" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24520" g_stop="24384" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="142" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23628" g_stop="23531" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="240" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23270" g_stop="22918" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="593" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E354159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24649" e_stop="24645"/>
          <exon e_start="24520" e_stop="24384"/>
          <exon e_start="23628" e_stop="23531"/>
          <exon e_start="23270" e_stop="22918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAGGTTAGTGTTATAAAATTTATTAAGCAGATTCCAATCTCTCCTTTCTTGTTCTCTCCCTCTTCCACCATCTCCTTATTGAACTGTCACTGTTAAAGTACTGTGCTACTAAGTCGCTTCTTAAAAAATATGTATATGTAACAACTATGCCTCAATCCCAAGCAAGTTGATTTCGACTGTATGAATTCTCACTGTTCATGTCCCTTCATTTAAACCATTCTTGAGCACAATAAGAATTCTGTATACGCTGTTGGATATTACAGGCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGAT</genome_strand>
        <mrna_strand>AAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG....................................................................................................................................................................................................................................................................GCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745532" ref_strand="+" ref_description="SGN-E745532 [GI|47105922]">
      <seq>gacattatagtttcttagattttttctacaatttatcttcttcggattttcagtctctttctgcagataatttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataacttcacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagacaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggactgtcagaactcagcgatctgttgggggagctcaagaatatggctgttgacatgggatctgaaattgagaggcataaagatgcattggatcatactgaacaggatgttgatgagcttggcaccagagttcaaggggccaaccggaggattcggcgcttgcttggaaagtaaaccagtagacatctgttgtgggaacctattaatgagctttcagacgttaacttcagtttatcatttcagctattcttgagtttttcacaaatgcttctctctgtaattttatgttactttgtattataattttacaatattctatgacagtaaaccaagttaattgtatggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27144" stop="22698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26845" g_stop="26793" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26792" i_stop="25594" i_length="1199">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25593" g_stop="25032" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="615" r_length="562" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24738" g_stop="24645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="709" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24520" g_stop="24384" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="846" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23628" g_stop="23531" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="944" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23270" g_stop="23001" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1214" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1232"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E745532" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1214</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26845" e_stop="26793"/>
          <exon e_start="25593" e_stop="25032"/>
          <exon e_start="24738" e_stop="24645"/>
          <exon e_start="24520" e_stop="24384"/>
          <exon e_start="23628" e_stop="23531"/>
          <exon e_start="23270" e_stop="23001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTATAGTTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAGGTACTGCGTATCATCATTTTGATCTATTCTGTTTTTCAGTTATGGAGATTCTGTTTTCTTTCCTGTTTGCTGTACATTGTGGGGTTTTGTACAAGTTCTGAATTTCAATTTTATGAATTTATGAAGGAAAAAATGGATCTTTTTGTTCATATAGGTCGTTTCAAACTTCATTCAGTGATTTGTTTTTGTTCTTCTATTTTTTGTGTATTTTTATGTGAGAAATTATGATTTGGAGCTATCTTATCTACTCTGTAGGAAAACCTTGTTTTCTCGCTATATTCGTGTTTTTTTTTACTATATGATTTGTGGGAATTTGAGAATCAGGATGATAGCGTTAGGAATATCAATCGGGAATATTCTTAAATTTCTGCTTAGTTAAAGGATGATTGTTGGAATTTGCTTCGATAGAAGAAACTTGAAATTCTGGGTTTTGTTAGGACGGAGATGTAAATAGAACTGGACTTGTATATCCCCTAAATTTTCGATATTATTCTTGCTCCTTGTTGGATTTTCTTGATTTTTTCAAGGATTTACTTAGTTTGACTTTGGTAACTAAATTTCTCAACTACCACCAAGCTATCCTCGCTTGCCTGTGTTATGTAAATGAAACCGGTTCAAATAGAGAGATGCTCTTGGGTTTCCTCTTTCATTATCATAGCTAAATTTGAGTAGGATGAATCAACCTGAGGAAAAGTAGGTAAGGTTAGACCCCTCGACTTGATTGAAGTTGACTTCGCTGAGTTCTGAATAAATCAAAAAGTTTATTGATTTGATTCGCCCCATTTCATTTATTTGGGTGAGAGGGAGGCTGTGAGTCACCTGGGCTATGGATCTTTCCGTTGGTTGATTCTCGAGATCACCTCTTCAAAGAAAAAAAAAAGAGGGCCCATGGTTCTGGCCCTGCAAATGAATAGGAAGCACTTGGTACTGAGATGCAGTTGTTTGTTGTTCGTGTTTTTGTTGTAGTATTATATTAGTATTGCATACTTGATTTTAGACTTCTCTTATTAGTGCTACATCTCTGAACAAAGCTTGGTTTGAGTCTTTATTGCTATCTTTTGCGTGTTGTGTGCTCCTAATCTCTTATCTTCTAGCCAATGTTCCTTTGTGATCTGTTACTGAATTGTCTCCTTGTACGTGTCTCACAGTAGCAAACTATCAGTTCTCTGTATGATGAACTTCGCTTAATAGTTTGATAGTCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAGGTTAGTGTTATAAAATTTATTAAGCAGATTCCAATCTCTCCTTTCTTGTTCTCTCCCTCTTCCACCATCTCCTTATTGAACTGTCACTGTTAAAGTACTGTGCTACTAAGTCGCTTCTTAAAAAATATGTATATGTAACAACTATGCCTCAATCCCAAGCAAGTTGATTTCGACTGTATGAATTCTCACTGTTCATGTCCCTTCATTTAAACCATTCTTGAGCACAATAAGAATTCTGTATACGCTGTTGGATATTACAGGCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATG</genome_strand>
        <mrna_strand>GACATTATAGTTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTCACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGACAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG....................................................................................................................................................................................................................................................................GCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264065" ref_strand="+" ref_description="SGN-E264065 [cLEG-64-G11]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggactgtcagaactcagcgatctgttgggggagctcaagaatatggctgttgacatgggatctgaaattgagaggcataaagatgcattggatcatactgaacaggatgttgatgagcttggcaccagagttcaaggggccaaccggaggattcngcgcttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25672" stop="22880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25372" g_stop="25032" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24738" g_stop="24645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24520" g_stop="24384" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="572" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23628" g_stop="23531" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="670" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23270" g_stop="23180" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="761" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E264065" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25372" e_stop="25032"/>
          <exon e_start="24738" e_stop="24645"/>
          <exon e_start="24520" e_stop="24384"/>
          <exon e_start="23628" e_stop="23531"/>
          <exon e_start="23270" e_stop="23180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAGGTTAGTGTTATAAAATTTATTAAGCAGATTCCAATCTCTCCTTTCTTGTTCTCTCCCTCTTCCACCATCTCCTTATTGAACTGTCACTGTTAAAGTACTGTGCTACTAAGTCGCTTCTTAAAAAATATGTATATGTAACAACTATGCCTCAATCCCAAGCAAGTTGATTTCGACTGTATGAATTCTCACTGTTCATGTCCCTTCATTTAAACCATTCTTGAGCACAATAAGAATTCTGTATACGCTGTTGGATATTACAGGCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTT</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG....................................................................................................................................................................................................................................................................GCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCNGCGCTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261141" ref_strand="+" ref_description="SGN-E261141 [cLEG-65-N7]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagaaggagaaattacgattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaagctgagaaagccaagcaagatgatggactgtcagaactcagcgatctgttgggggagctcaagaatatggctgttgacatgggatctngaattgagaggcataaagatgcattggatcatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25672" stop="22944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25372" g_stop="25032" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24738" g_stop="24645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24520" g_stop="24384" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="572" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23628" g_stop="23531" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="670" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23270" g_stop="23244" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="697" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E261141" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25372" e_stop="25032"/>
          <exon e_start="24738" e_stop="24645"/>
          <exon e_start="24520" e_stop="24384"/>
          <exon e_start="23628" e_stop="23531"/>
          <exon e_start="23270" e_stop="23244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAGGTTAGTGTTATAAAATTTATTAAGCAGATTCCAATCTCTCCTTTCTTGTTCTCTCCCTCTTCCACCATCTCCTTATTGAACTGTCACTGTTAAAGTACTGTGCTACTAAGTCGCTTCTTAAAAAATATGTATATGTAACAACTATGCCTCAATCCCAAGCAAGTTGATTTCGACTGTATGAATTCTCACTGTTCATGTCCCTTCATTTAAACCATTCTTGAGCACAATAAGAATTCTGTATACGCTGTTGGATATTACAGGCATAAAGATGCATTGGATCATACTGA</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAAGGAGAAATTACGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTNGAATTGAGAG....................................................................................................................................................................................................................................................................GCATAAAGATGCATTGGATCATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709748" ref_strand="+" ref_description="SGN-E709748 [FA53AA08]">
      <seq>cgttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaacccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagcccaagcagatgatggactgtcagaactcagcgatctgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25875" stop="23276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25577" g_stop="25032" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24738" g_stop="24645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="640" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24520" g_stop="24384" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="778" r_length="138" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23628" g_stop="23576" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="831" r_length="53" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E709748" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25577" e_stop="25032"/>
          <exon e_start="24738" e_stop="24645"/>
          <exon e_start="24520" e_stop="24384"/>
          <exon e_start="23628" e_stop="23576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAA-CCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGG</genome_strand>
        <mrna_strand>CGTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCCAAGCAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316668" ref_strand="+" ref_description="SGN-E316668 [cTOB-7-H3]">
      <seq>agttggaaaactattccgtctacaggtcagaagagactacaggatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttctaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaagggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggactgtcagaactcagcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25513" stop="23284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25213" g_stop="25032" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24738" g_stop="24645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="276" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24520" g_stop="24384" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="413" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23628" g_stop="23584" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="458" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E316668" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25213" e_stop="25032"/>
          <exon e_start="24738" e_stop="24645"/>
          <exon e_start="24520" e_stop="24384"/>
          <exon e_start="23628" e_stop="23584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGAT</genome_strand>
        <mrna_strand>AGTTGGAAAACTATTCCGTCTACAGGTCAGAAGAGACTACAGGATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCTAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAAGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369845" ref_strand="+" ref_description="SGN-E369845 [TUS-25-O13]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25672" stop="23301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25372" g_stop="25032" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24738" g_stop="24645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24520" g_stop="24384" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="572" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23628" g_stop="23601" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="600" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E369845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25372" e_stop="25032"/>
          <exon e_start="24738" e_stop="24645"/>
          <exon e_start="24520" e_stop="24384"/>
          <exon e_start="23628" e_stop="23601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGAC</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255371" ref_strand="+" ref_description="SGN-E255371 [cLEG-30-F21]">
      <seq>cggagccttctgcagctgccccatatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattangattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25672" stop="24101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25372" g_stop="25032" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24738" g_stop="24645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24520" g_stop="24401" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="555" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E255371" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25372" e_stop="25032"/>
          <exon e_start="24738" e_stop="24645"/>
          <exon e_start="24520" e_stop="24401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATG</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCATATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTANGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254733" ref_strand="+" ref_description="SGN-E254733 [cLEG-29-P24]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcgagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaagattgaactctgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25672" stop="24148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25372" g_stop="25032" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24738" g_stop="24645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="435" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24520" g_stop="24448" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="508" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E254733" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25372" e_stop="25032"/>
          <exon e_start="24738" e_stop="24645"/>
          <exon e_start="24520" e_stop="24448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACC</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCGAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAAGATTGAACTCTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258981" ref_strand="+" ref_description="SGN-E258981 [cLEG-41-H18]">
      <seq>cggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25672" stop="24397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25372" g_stop="25032" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24738" g_stop="24697" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="383" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E258981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25372" e_stop="25032"/>
          <exon e_start="24738" e_stop="24697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAG</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254599" ref_strand="+" ref_description="SGN-E254599 [cLEG-29-P12]">
      <seq>cggagccttctgcaactgccccaaatttgagtacaaacccttttgatgatgatgaggttaaagagactccttcacatgcttactcaacttcgacggcgagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtggaggagttggaaaactatgccggctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattgcaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25672" stop="24403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25372" g_stop="25032" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24738" g_stop="24703" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="377" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E254599" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25372" e_stop="25032"/>
          <exon e_start="24738" e_stop="24703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTT</genome_strand>
        <mrna_strand>CGGAGCCTTCTGCAACTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAGGTTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCGAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTGGAGGAGTTGGAAAACTATGCCGGCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTGCAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327728" ref_strand="+" ref_description="SGN-E327728 [cTOC-20-E6]">
      <seq>ttttttctacaatttatcttcttcggattttcagataatttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27126" stop="24736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26826" g_stop="26793" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26792" i_stop="25581" i_length="1212">
            <donor d_prob="0.724" d_score="0.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25580" g_stop="25037" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="578" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E327728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26826" e_stop="26793"/>
          <exon e_start="25580" e_stop="25037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTACAATTTATCTTCTTCGGATTTTCAGGTACTGCGTATCATCATTTTGATCTATTCTGTTTTTCAGTTATGGAGATTCTGTTTTCTTTCCTGTTTGCTGTACATTGTGGGGTTTTGTACAAGTTCTGAATTTCAATTTTATGAATTTATGAAGGAAAAAATGGATCTTTTTGTTCATATAGGTCGTTTCAAACTTCATTCAGTGATTTGTTTTTGTTCTTCTATTTTTTGTGTATTTTTATGTGAGAAATTATGATTTGGAGCTATCTTATCTACTCTGTAGGAAAACCTTGTTTTCTCGCTATATTCGTGTTTTTTTTTACTATATGATTTGTGGGAATTTGAGAATCAGGATGATAGCGTTAGGAATATCAATCGGGAATATTCTTAAATTTCTGCTTAGTTAAAGGATGATTGTTGGAATTTGCTTCGATAGAAGAAACTTGAAATTCTGGGTTTTGTTAGGACGGAGATGTAAATAGAACTGGACTTGTATATCCCCTAAATTTTCGATATTATTCTTGCTCCTTGTTGGATTTTCTTGATTTTTTCAAGGATTTACTTAGTTTGACTTTGGTAACTAAATTTCTCAACTACCACCAAGCTATCCTCGCTTGCCTGTGTTATGTAAATGAAACCGGTTCAAATAGAGAGATGCTCTTGGGTTTCCTCTTTCATTATCATAGCTAAATTTGAGTAGGATGAATCAACCTGAGGAAAAGTAGGTAAGGTTAGACCCCTCGACTTGATTGAAGTTGACTTCGCTGAGTTCTGAATAAATCAAAAAGTTTATTGATTTGATTCGCCCCATTTCATTTATTTGGGTGAGAGGGAGGCTGTGAGTCACCTGGGCTATGGATCTTTCCGTTGGTTGATTCTCGAGATCACCTCTTCAAAGAAAAAAAAAAGAGGGCCCATGGTTCTGGCCCTGCAAATGAATAGGAAGCACTTGGTACTGAGATGCAGTTGTTTGTTGTTCGTGTTTTTGTTGTAGTATTATATTAGTATTGCATACTTGATTTTAGACTTCTCTTATTAGTGCTACATCTCTGAACAAAGCTTGGTTTGAGTCTTTATTGCTATCTTTTGCGTGTTGTGTGCTCCTAATCTCTTATCTTCTAGCCAATGTTCCTTTGTGATCTGTTACTGAATTGTCTCCTTGTACGTGTCTCACAGTAGCAAACTATCAGTTCTCTGTATGATGAACTTCGCTTAATAGTTTGATAGTCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTA</genome_strand>
        <mrna_strand>TTTTTTCTACAATTTATCTTCTTCGGATTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339779" ref_strand="+" ref_description="SGN-E339779 [cTOE-16-F6]">
      <seq>tttcttagattttttctacaatttatcttcttcggattttcagataatttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27135" stop="24796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26835" g_stop="26793" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26792" i_stop="25581" i_length="1212">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25580" g_stop="25096" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="528" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E339779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26835" e_stop="26793"/>
          <exon e_start="25580" e_stop="25096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAGGTACTGCGTATCATCATTTTGATCTATTCTGTTTTTCAGTTATGGAGATTCTGTTTTCTTTCCTGTTTGCTGTACATTGTGGGGTTTTGTACAAGTTCTGAATTTCAATTTTATGAATTTATGAAGGAAAAAATGGATCTTTTTGTTCATATAGGTCGTTTCAAACTTCATTCAGTGATTTGTTTTTGTTCTTCTATTTTTTGTGTATTTTTATGTGAGAAATTATGATTTGGAGCTATCTTATCTACTCTGTAGGAAAACCTTGTTTTCTCGCTATATTCGTGTTTTTTTTTACTATATGATTTGTGGGAATTTGAGAATCAGGATGATAGCGTTAGGAATATCAATCGGGAATATTCTTAAATTTCTGCTTAGTTAAAGGATGATTGTTGGAATTTGCTTCGATAGAAGAAACTTGAAATTCTGGGTTTTGTTAGGACGGAGATGTAAATAGAACTGGACTTGTATATCCCCTAAATTTTCGATATTATTCTTGCTCCTTGTTGGATTTTCTTGATTTTTTCAAGGATTTACTTAGTTTGACTTTGGTAACTAAATTTCTCAACTACCACCAAGCTATCCTCGCTTGCCTGTGTTATGTAAATGAAACCGGTTCAAATAGAGAGATGCTCTTGGGTTTCCTCTTTCATTATCATAGCTAAATTTGAGTAGGATGAATCAACCTGAGGAAAAGTAGGTAAGGTTAGACCCCTCGACTTGATTGAAGTTGACTTCGCTGAGTTCTGAATAAATCAAAAAGTTTATTGATTTGATTCGCCCCATTTCATTTATTTGGGTGAGAGGGAGGCTGTGAGTCACCTGGGCTATGGATCTTTCCGTTGGTTGATTCTCGAGATCACCTCTTCAAAGAAAAAAAAAAGAGGGCCCATGGTTCTGGCCCTGCAAATGAATAGGAAGCACTTGGTACTGAGATGCAGTTGTTTGTTGTTCGTGTTTTTGTTGTAGTATTATATTAGTATTGCATACTTGATTTTAGACTTCTCTTATTAGTGCTACATCTCTGAACAAAGCTTGGTTTGAGTCTTTATTGCTATCTTTTGCGTGTTGTGTGCTCCTAATCTCTTATCTTCTAGCCAATGTTCCTTTGTGATCTGTTACTGAATTGTCTCCTTGTACGTGTCTCACAGTAGCAAACTATCAGTTCTCTGTATGATGAACTTCGCTTAATAGTTTGATAGTCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCA</genome_strand>
        <mrna_strand>TTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281931" ref_strand="+" ref_description="SGN-E281931 [cLES-2-H8]">
      <seq>tcggattttcagataatttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25889" stop="24868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25580" g_stop="25168" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="425" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E281931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25580" e_stop="25168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATC</genome_strand>
        <mrna_strand>ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539217" ref_strand="+" ref_description="SGN-E539217 [TUS-58-N21](-)">
      <seq>cagacgataaatttttgcaggaggaaggtcttgagtgatgtgtcaaaagcatgtcctgatgaattgattgataataacagtagttgtggtcacaatattcagcctctagacagacatcattcaaatgaagtgggtaaccatgatgtagaagataactcttgtaccactgatgcagctggggcttcttcagatacaccacaggtaaaaactggatgattgtaaacactgggcaagtcattttgctggtgttggcattgacagtgggcatgattttgtgatggagccatctaatggtaaagaatgggatatgggagggtacttgagctgtcctaagaatgaagttgatttgttaccaacttgctctatgattgaggaagtgtttggagaagaagcctggagttccaagcacagagatggtcacagtttaagcaagcattgacctgttgcatatgatacccgtttattttttgccgttggatcatccttggaacacttcttgcaaaagtgagatccatttttacttgtatattatttagtggtgaaaggacagagcatgttagggataaaagttgagattttcgaccttgctcttggttgttagtaggaagctgttttgaggtaggcggttaggattaatttatatgtaaattatatggccgagttgagccatctttcgacaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42675" stop="41384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42375" g_stop="41684" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E539217" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42375" e_stop="41684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTCAGATACACCACAGGTAAAAACT-GATGATTGTAAACACTGGGCAAGTCATTTTGCTGGTGTTGGCATTGACAGTGGGCATGATTTTGTGATGGAGCCATCTAATGGTAAAGAATGGGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</genome_strand>
        <mrna_strand>CAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTAGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTCAGATACACCACAGGTAAAAACTGGATGATTGTAAACACTGGGCAAGTCATTTTGCTGGTGTTGGCATTGACAGTGGGCATGATTTTGTGATGGAGCCATCTAATGGTAAAGAATGGGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGAAGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347757" ref_strand="+" ref_description="SGN-E347757 [cTOF-26-M12]">
      <seq>ggatatgggagggtacttgagctgtcctaagaatgaagttgatttgttaccaacttgctctatgattgaggaagtgtttggagacgaagcctggagttccaagcacagagatggtcacagtttaagcaagcattgacctgttgcatatgatacccgtttattttttgccgttggatcatccttggaacacttcttgcaaaagtgagatccatttttacttgtatattatttagtggtgaaaggacagagcatgttagggataaaagttgagattttcgaccttgctcttggttgttagtaggaagctgttttgaggtaggcggttaggattaatttatatgtaaattatatggccgagttgagccatctttcgacaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42373" stop="41384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42073" g_stop="41684" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E347757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42073" e_stop="41684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</genome_strand>
        <mrna_strand>GGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378854" ref_strand="+" ref_description="SGN-E378854 [TUS-3-O5]">
      <seq>attgggtgctcctgtggagatgctggttcctttggatgtgttcggttgcacatcatggaagcaagggagaaacttaaggcggccttgggtgaggaaacatttgttaggttgggtgtttatgatatgggagagatagtggcagagaaatggagtgaagaggaagaggaattatttcatgaagttgtattttccaatcctgcagcattaggcaagaatttctgggaccaccttgctgttgaatttccttcacggagcaagagagatcttgttagctattacttcaatgtctttattttgcggaagcgtgccaagcagaataggttgacccatcaaatatagacagtgataacgatgaatggcaggagattgatgatgatgttgttgctacgggagctcaaatgacagatgacgacgaggattctgtggttgaatcaccaatatatcaaaattatcctggtcacaatgagatatatgtgactgaaaaacaagcatatgatgaagaagctggtgttgcaaccttggaagattatcagacgataaatttttgcaggaggaaggtcttgagtgatgtgtcaaaagcatgtcctgatgaattgattgataataacagtagttgtggtcacaatattcagcctctagacagacatcattcaaatgaagtgggtaaccatgatgttgaagaatactcttgtaccactgatgcagctggggcttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43206" stop="41888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42906" g_stop="42188" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E378854" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42906" e_stop="42188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTC</genome_strand>
        <mrna_strand>ATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGG-TTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGAATACTCTTGTACCACTGATGCAGCTGGGGCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207993" ref_strand="+" ref_description="SGN-E207993 [cLEC-34-L12]">
      <seq>aagaattgggtgctcctgtggagatgctggttcctttggatgtgttcggttgcacatcatggaagcaagggagaaacttaaggcggccttgggtgaggaaacatttgttaggttgggtgtttatgatatgggagagatagtggcagagaaatggagtgaagaggaagaggaattatttcatgaagttgtattttccaatcctgcagcattaggcaagaatttctgggaccaccttgctgttgaatttccttcacggagcaagagagatcttgttagctattacttcaatgtctttattttgcggaagcgtgccaagcagaataggttgacccatcaaatatagacagtgataacgatgaatggcaggagattgatgatgatgttgttgctacgggagctcaaatgacagatgacgacgaggattctgtggttgaatcaccaatatatcaaaattatcctggtcacaatgagatatatgtgactgaaaaacaagcatatgatgaagaagctggtgttgcaaccttggaagattatcagacgataaatttttgcaggaggaaggtcttgagtgatgtgtcaaaagcatgtcctgatgaattgattgataataacagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43210" stop="41993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42910" g_stop="42293" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E207993" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42910" e_stop="42293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAG</genome_strand>
        <mrna_strand>AAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGG-TTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539220" ref_strand="+" ref_description="SGN-E539220 [TUS-58-N21]">
      <seq>tttttccccaaaatcaatttctcatcttctacccctttaatcgaccttgatttttcttcttgaagatcaaatcaaccctccgatacttctaattcggttcattctcaatcgattggtacctcttttggatctatccgtctggaaatcgaattccgagttaaatatggtgcaaaaaagaccatacagtgaagaaaagttgtatgaggtttcatctaaacagccgatacatgtaaaaccgagtactcagctagtttcctttttgcagtttccgtgtgaatcagtggctcccaactcttacacttcaggtggcgatgaggagaaattttcataagtcagagcttttactgagaaaagacctgatagttgccatgtgactgctgtccctgtttcttcacagaaagcaattgagacgagcatccagggctctgcttcaaactcttcttggacctctagtagcaccagcgaagaagacattacgtccgaggtgacttttcatgtattgacggcttctaaatattacagtagtgatcctccattccgagttgttattcatccaatggaggtctattcccctcttttcaacaatcctcctcggaaatcggctgcccattggaccagatttccaagccgaattaccagaatgccgtgcatatgatagtaaaaatatatccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45341" stop="42769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45041" g_stop="44886" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44885" i_stop="43801" i_length="1085">
            <donor d_prob="0.687" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43800" g_stop="43653" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="305" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43652" i_stop="43437" i_length="216">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43436" g_stop="43069" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="674" r_length="369" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E539220" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45041" e_stop="44886"/>
          <exon e_start="43800" e_stop="43653"/>
          <exon e_start="43436" e_stop="43069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAA-CCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAGGTTAGGGTTTCAGATCTATAGGTTTTTTCATCAGATCTGTTCGATCTACCTTTATTTCATGAAATTAATTCAGTTTCTAGCTTGATTTTGTTATCATCTCTTGATTTCTTGAGAAAAAAAAAGATCGATTTTTTTTTTATTTTGAGGATTTTCTTGTTATATCAGCTTTTGTTCGTGCTCGATCTGCGATTCGTCGCTTCATTTCTGATCGATTTGATTATTTTTTGAATTTTTTTACATCGAATTCAAATTTGGGGATCTAGGGTTAGGGTTAGGTTTCTTAATTCATAAAATTGTAATTAAATCATTTTAGGTCACGATTTCCAGAACAAAACCAGTAAAAATACGTCCGATTTCCTGATACGGACTGTCGATTGATAGTAATTAGCTCAAAATCAAAGATCTCATCTTTTTAAAAAAAAAATTGTTTATTAAATAAACAAAAATATATATTTTTTAATATTTTAGATTTTTACTTTCAAAAACTCTGAGCCACTCCATTTTCACTGTACATGTGCCACGTGTTACAAATTAGAAACTTATACAAATGATTACTATGTCCTCTACCTCTTGAGTGGCAACCTTTTCAACTATTACTTTGATTCTTTGCTTGAAACAGAGTGAACTGTGTATCTACTTGAATGTCCAACTGTGCTTTGACAATTTCTAGTCTTGTCTACATTTGTTCTTTATTATATCATATGGGGTGTTCTATGTTGCTACTTCCCTCAACATACTCTCTGAATTTTTTCTCTTGTTCTTTATTAGTATGCTATTGATAGTTTAGTATCTGTTGTTGTGCAGTATTTTGTAAGTATCTTTTTTGGGGGTTATGGAAGTTATATTTCTGTAGTTAGAAAATATCAATTTTGTGGTTAGCTATGACCAAAAAGATTTCATTTTTGTGTTCAATGCTGGATGTTGTGTCTACATCTCTGTCATGTACTTTTTGTGTTTGCAGAATGCTCTGGATACCGTTTGTGTTTTATGGAATTGTTTGCGTTCTTTGAATTCATGGAACTTAATTCTCCTCCACTTTCCCTTTTCTGAATCTGCTTAACACCTTCTTCAACTTCCTTTTGCAGTTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAGGTTAGGAAGAGATTAATCTATCAAATTCCTGAAATGATTTACGTTGTTTTAACTGCTTTGTGGATAATGGTTAGAATGGTTTTATTTACTCAAACTTAAGATACTCTTGGAAAACAGCTTCTCATTAGGAGGTTGCTCTTTTAGCAGCACGTTTGGATGTTGAATTAATTTGTGGATTTTCATCCTTGGATGATCTAAATTTTTGGTCTTTGGTAGGTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGG-TTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATAGTAAAAATATATCCGTG</genome_strand>
        <mrna_strand>TTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCCTCCGATACTTCTAATTCGGTTCATTCTCAATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAACAGCCGATACATGTAAAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAG........................................................................................................................................................................................................................GTGGCGATGAGGAGAAATTTTCATAAGTCAGAGCTTTTACTGAGAAAAGACCTGATAGTTGCCATGTGACTGCTGTCCCTGTTTCTTCACAGAAAGCAATTGAGACGAGCATCCAGGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTACGTCCGAGGTGACTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGGCTGCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGCCGTGCATATGATAGTAAAAATATATCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283497" ref_strand="+" ref_description="SGN-E283497 [cLER-12-E7]">
      <seq>ttttccccaaaatcaatttctcatcttctacccctttaatcgaccttgatttttcttcttgaagatcaaatcaacctccgatacttctaattcgtttcattctctatcgattggtacctcttttggatctatccgtctggaaatcgaattccgagttaaatatggtgcaaaaaagaccatacagtgaagaaaagttgtatgaggtttcatctaagcagccgagacatgtagaaccgagtactcagctagtttcctttttgcagtttccgtgtgaatcagtggctcccaactcttacacttcaggtggcgatgaggagaaattttcagaagtcagagcttttagtgagaaaagacctgatagttgcgatgtgactgctgtccctgtttcttcagagaaagcaattgagacgagcatccatggctctgcttcaaactcttcttggacctctagtagcaccagcgaagaagacattaggtccgaggtgccttttcatgtattgacggcttctaaatattacagtagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45340" stop="42912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45040" g_stop="44886" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44885" i_stop="43801" i_length="1085">
            <donor d_prob="0.687" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43800" g_stop="43653" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="303" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43652" i_stop="43437" i_length="216">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43436" g_stop="43212" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="528" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E283497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45040" e_stop="44886"/>
          <exon e_start="43800" e_stop="43653"/>
          <exon e_start="43436" e_stop="43212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAGGTTAGGGTTTCAGATCTATAGGTTTTTTCATCAGATCTGTTCGATCTACCTTTATTTCATGAAATTAATTCAGTTTCTAGCTTGATTTTGTTATCATCTCTTGATTTCTTGAGAAAAAAAAAGATCGATTTTTTTTTTATTTTGAGGATTTTCTTGTTATATCAGCTTTTGTTCGTGCTCGATCTGCGATTCGTCGCTTCATTTCTGATCGATTTGATTATTTTTTGAATTTTTTTACATCGAATTCAAATTTGGGGATCTAGGGTTAGGGTTAGGTTTCTTAATTCATAAAATTGTAATTAAATCATTTTAGGTCACGATTTCCAGAACAAAACCAGTAAAAATACGTCCGATTTCCTGATACGGACTGTCGATTGATAGTAATTAGCTCAAAATCAAAGATCTCATCTTTTTAAAAAAAAAATTGTTTATTAAATAAACAAAAATATATATTTTTTAATATTTTAGATTTTTACTTTCAAAAACTCTGAGCCACTCCATTTTCACTGTACATGTGCCACGTGTTACAAATTAGAAACTTATACAAATGATTACTATGTCCTCTACCTCTTGAGTGGCAACCTTTTCAACTATTACTTTGATTCTTTGCTTGAAACAGAGTGAACTGTGTATCTACTTGAATGTCCAACTGTGCTTTGACAATTTCTAGTCTTGTCTACATTTGTTCTTTATTATATCATATGGGGTGTTCTATGTTGCTACTTCCCTCAACATACTCTCTGAATTTTTTCTCTTGTTCTTTATTAGTATGCTATTGATAGTTTAGTATCTGTTGTTGTGCAGTATTTTGTAAGTATCTTTTTTGGGGGTTATGGAAGTTATATTTCTGTAGTTAGAAAATATCAATTTTGTGGTTAGCTATGACCAAAAAGATTTCATTTTTGTGTTCAATGCTGGATGTTGTGTCTACATCTCTGTCATGTACTTTTTGTGTTTGCAGAATGCTCTGGATACCGTTTGTGTTTTATGGAATTGTTTGCGTTCTTTGAATTCATGGAACTTAATTCTCCTCCACTTTCCCTTTTCTGAATCTGCTTAACACCTTCTTCAACTTCCTTTTGCAGTTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAGGTTAGGAAGAGATTAATCTATCAAATTCCTGAAATGATTTACGTTGTTTTAACTGCTTTGTGGATAATGGTTAGAATGGTTTTATTTACTCAAACTTAAGATACTCTTGGAAAACAGCTTCTCATTAGGAGGTTGCTCTTTTAGCAGCACGTTTGGATGTTGAATTAATTTGTGGATTTTCATCCTTGGATGATCTAAATTTTTGGTCTTTGGTAGGTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATC</genome_strand>
        <mrna_strand>TTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAG........................................................................................................................................................................................................................GTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372368" ref_strand="+" ref_description="SGN-E372368 [TUS-30-N23](-)">
      <seq>taccaaaagaatcggtttgttaaccaagttgtctcctctatgttcaacacagtttcaggcaaaaaaattgctatccttggatttgctttcaagaaagatacaggtgacactagagagacaccagcaattgatgtgtgcaaaggcctattgggagacaatgctaacttgagcatatatgatccacaggtcactgaggatcaaatccgaaaggatctgtcaatgaaaaagtttgattgggataatccaattcacctccagccaatgagccccactgtgatgaagcaactcaatgtagtatgggatgcttatgcagccacaaaaggcgcccacggcctttgtcttttgaccgagtgggatgagttcaagactcttgatttcaagaagatttatgataacatgcaaaaacctgcatttgtgtttgatggaaggaacattgttgatgaacagaagctcagagaaatcgggttcatcgtctactccattgggaaacctttagatggatggctcaaggatatgcctgctgtggcataacccccctggaataagcactgaacatgagagcaaaatctatttatatttttccagtttttgttttttccattcaagcttacaattgttgtttcctagtagcattgttaaaaatgcttacctttatatcatgttttttttgtgtgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48934" stop="47657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48634" g_stop="47951" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E372368" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48634" e_stop="47951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCATGTTTTTTTTGTGTGTGAACTTCAG</genome_strand>
        <mrna_strand>TACCAAAAGAATCGGTTTGTTAACCAAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAAAAAATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTTTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTTTTGTTTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCATGTTTTTTTTGTGTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287143" ref_strand="+" ref_description="SGN-E287143 [cLES-6-M18]">
      <seq>ctgtgaatgcaatggtctcaaagaagttgctaactactggaaacaagtgattcaggtgaatgactaccaaaagaatcggtttgttaaccgagttgtctcctctatgttcaacacagtttcaggcaagaagattgctatccttggatttgctttcaagaaagatacaggtgacactagagagacaccagcaattgatgtgtgcaaaggcctattgggagacaatgctaacttgagcatatatgatccacaggtcactgaggatcaaatccgaaaggatctgtcaatgaaaaagtttgattgggataatccaattcacctccagccaatgagccccactgtgatgaagcaactcaatgtagtatgggatgcttatgcagccacaaaaggcgcccacggcctctgtcttttgaccgagtgggatgagttcaagactcttgatttcaagaagatttatgataacatgcaaaaacctgcatttgtgtttgatggaaggaacattgttgatgaacagaagctcagagaaatcgggttcatcgtctactccattgggaaacctttagatggatggctcaaggatatgcctgctgtggcataacccccctggaataagcactgaacatgagagcaaaatctatttatatttttccagttcttgtcttttccattcaagcttacaattgttgtttcctagtagcattgttaaaaatgcttacctttatatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48998" stop="47675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48698" g_stop="47975" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E287143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48698" e_stop="47975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCAT</genome_strand>
        <mrna_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372369" ref_strand="+" ref_description="SGN-E372369 [TUS-30-N23]">
      <seq>ctgtgaatgcaatggtctcaaagaagttgctaactactggaaacaagtgattcaggtgaatgactaccaaaagaatcggtttgttaaccgagttgtctcctctatgttcaacacagtttcaggcgagaagattgctatccttggatttgctttcaagaaagatacaggtgacactagagagacaccagcaattgatgtgtgcaaaggcctattgggagacaatgctaacttgagcatatatgatccacaggtcactgaggatcaaatccgaaaggatctgtcaatgaaaaagtttgattgggataatccaattcacctccagccaatgagccccactgtgatgaagcaactcaatgtagtatgggatgcttatgcagccacaaaaggcgcccacggcctctgtcttttgaccgagtgggatgagttcaagactcttgatttcaagaagatttatgataacatgcaaaaacctgcatttgtgtttgatggaaggaacattgttgatgaacagaagctcagagaaatcgggttcatcgtctactccattgggaaacctttagatggatggctcaaggatatgcctgctgtggcataacccccctggattaagcactgaacatgagagcaaaatctatttatatttttccagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48998" stop="47747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48698" g_stop="48047" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E372369" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48698" e_stop="48047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTC</genome_strand>
        <mrna_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCGAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGATTAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718988" ref_strand="+" ref_description="SGN-E718988 [FC06BG03]">
      <seq>atcggccgaattggcctctgccagcttaaatcgcatcgtcccccttctccctcgtgtgtatcgcccccctcccttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccccatcaagctcccaatttccctcatagccatacagacaaaattacaatattttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcaaatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggcctcaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgttaaggtaggtgacaaggtccagaaagggcaagtggtctgcattattgaggctatgaaattgatgaatgaaattgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55820" stop="58298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56111" g_stop="56460" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="404" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="538" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57363" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="839" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="911" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E718988" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56111" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCCATCTGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG</genome_strand>
        <mrna_strand>ATCGGCCGAATTGGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAAATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719940" ref_strand="+" ref_description="SGN-E719940 [FC09BC12]">
      <seq>gggcgattggcggcaaatcggccgaattgatctgcctctgccaccttaaatcgcatcgtcccccttctccctcgtgtgtatcgcccccctcccttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccccatcaagctcccaatttccctcatagccatacagacaaaattacaatattttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcaaatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggcctcaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55820" stop="57658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56120" g_stop="56460" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="370" r_length="341" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="424" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="558" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57358" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="854" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E719940" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56120" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTG</genome_strand>
        <mrna_strand>ATCTGCCTCTGCCACCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAAATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691443" ref_strand="+" ref_description="SGN-E691443 [LH_Ea06C01]">
      <seq>tttaaatcgcatcgtccccctactccctcgtgtgtatcgcccccctcccttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccctcaaagctcccaatttccctcatagccatacagacaaaattacaatcttttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcttcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55836" stop="57657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56135" g_stop="56460" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="379" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="513" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57357" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="808" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E691443" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56135" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTT</genome_strand>
        <mrna_strand>TTTAAATCGCATCGTCCCCCTACTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAA-CCCCCTCAAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATCTTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCTTCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730857" ref_strand="+" ref_description="SGN-E730857 [LA25BF09]">
      <seq>catttaatcgtcccccttctccctcgtgtgtatcgcccccctcccttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccccatcaagctcccaatttccctcatagccatacagacaaaattacaatattttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggcctcaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccactgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55845" stop="57656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56139" g_stop="56460" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="376" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="510" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57356" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="804" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E730857" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56139" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTT</genome_strand>
        <mrna_strand>CATTTAATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCACTGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701513" ref_strand="+" ref_description="SGN-E701513 [FA16AG04]">
      <seq>gaggcttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccccatcaagctcccaatttccctcatagccatacagacaaaattacaatattttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggcctcaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgttaaggtaggtgacaaggtccagaaagggcaagtggtctgcattattgaggctatgaaattgatgaaatgaattgangctgatncagctggaaccatagttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55883" stop="58706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56179" g_stop="56460" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="336" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="470" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57363" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="771" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="843" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58378" g_stop="58406" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="844" r_stop="872" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E701513" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56179" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
          <exon e_start="58378" e_stop="58406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACAT</genome_strand>
        <mrna_strand>GAGGCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAAATGAATTGAN............................................................................................................................................................................................................................................................................................................................................................................................GCTGATNCAGCTGGAACCATAGTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366152" ref_strand="+" ref_description="SGN-E366152 [cLPT-15-P14]">
      <seq>tcaaagctcccaatttccctcatagccattcagacaaaattacaatcttttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtttctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55960" stop="57391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56260" g_stop="56460" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="256" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="390" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57091" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="419" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E366152" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56260" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-AAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGC</genome_strand>
        <mrna_strand>TCAAAGCTCCCAATTTCCCTCATAGCCATTCAGACAAAATTACAATCTTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTTTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692110" ref_strand="+" ref_description="SGN-E692110 [LH_Ea07N20]">
      <seq>tgtatcgtgccgaattcggcacgaggcatagccatacagaccttattacaatcttttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcttcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgacattgatgaatgaaattgaggctgaatcagctggaaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55997" stop="58306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56279" g_stop="56460" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="208" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="262" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="396" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57363" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="697" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="769" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E692110" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56279" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG</genome_strand>
        <mrna_strand>CATAGCCATACAGACCTTATTACAATCTTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCTTCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGACATTGATGAATGAAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692789" ref_strand="+" ref_description="SGN-E692789 [LH_Ea09K03]">
      <seq>tgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcttcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56012" stop="58852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56312" g_stop="56460" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="203" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="337" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57363" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="638" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="710" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58378" g_stop="58443" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="776" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58528" g_stop="58552" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="801" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E692789" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56312" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
          <exon e_start="58378" e_stop="58443"/>
          <exon e_start="58528" e_stop="58552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGAT</genome_strand>
        <mrna_strand>TGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCTTCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312663" ref_strand="+" ref_description="SGN-E312663 [cLEZ-20-J24]">
      <seq>tcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56042" stop="57424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56342" g_stop="56460" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="173" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="307" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57124" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="369" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E312663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56342" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTA</genome_strand>
        <mrna_strand>TCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690745" ref_strand="+" ref_description="SGN-E690745 [LH_Ea04E23]">
      <seq>tatttctgtcctctctgttgcttcttcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56056" stop="58936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56355" g_stop="56460" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="160" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="294" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57363" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="595" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="667" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58378" g_stop="58443" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="733" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58528" g_stop="58636" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="842" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E690745" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56355" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
          <exon e_start="58378" e_stop="58443"/>
          <exon e_start="58528" e_stop="58636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGC</genome_strand>
        <mrna_strand>TATTTCTGTCCTCTCTGTTGCTTCTTCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696629" ref_strand="+" ref_description="SGN-E696629 [LH_Ea09K03](-)">
      <seq>ggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaaccagtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtattactcattttccttatgctgctcataaattttggaacgatattttctttataaagttgtgactgatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56277" stop="59083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56577" g_stop="56598" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="156" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57063" g_stop="57363" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="457" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="529" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58378" g_stop="58443" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="595" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58528" g_stop="58779" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="846" r_length="251" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="847" polyA_stop="861"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E696629" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56577" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
          <exon e_start="58378" e_stop="58443"/>
          <exon e_start="58528" e_stop="58779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATG</genome_strand>
        <mrna_strand>GGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCAGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACGATATTTTCTTTATAAAGTTGTGAC-TGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694585" ref_strand="+" ref_description="SGN-E694585 [LH_Ea04E23](-)">
      <seq>gaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtagtactcattttccttatgctgctcataaatttcggaaaaatgttttctttataaagtcgtgcctgatgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56577" stop="59083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56969" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57063" g_stop="57363" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="394" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="466" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58378" g_stop="58443" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="532" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58528" g_stop="58783" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="787" r_length="255" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="788" polyA_stop="798"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E694585" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56969"/>
          <exon e_start="57063" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
          <exon e_start="58378" e_stop="58443"/>
          <exon e_start="58528" e_stop="58783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</genome_strand>
        <mrna_strand>GAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTAGTACTCATTTTCCTTATGCTGCTCATAAATTTCGGAAAAATGTTTTCTTTATAAAGTCGTG-CCTGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695950" ref_strand="+" ref_description="SGN-E695950 [LH_Ea07N20](-)">
      <seq>gaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttggtgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattttatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccctgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtattactcattttccttatgctgctcataaattttggaactatattatcgttataaagttgtgacttgatggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56577" stop="59083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56969" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57063" g_stop="57363" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="394" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="466" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58378" g_stop="58443" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="532" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58528" g_stop="58779" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="784" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="801"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E695950" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56969"/>
          <exon e_start="57063" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
          <exon e_start="58378" e_stop="58443"/>
          <exon e_start="58528" e_stop="58779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATG</genome_strand>
        <mrna_strand>GAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGGTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTTTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCCTGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTATCGTTATAAAGTTGTGACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346196" ref_strand="+" ref_description="SGN-E346196 [cTOF-23-G5]">
      <seq>cctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgttaaggtaggtgacaaggtccagaaagggcaagtggtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcacttattactcttgttgaaatctatgatcatatttatnagcttgtattanctcattttccttatgcntgctcataaanttttggaactatanttttctttataaaagttgtgactttgatgataancctctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56956" stop="59089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57256" g_stop="57363" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="180" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58378" g_stop="58443" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="246" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58528" g_stop="58789" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="517" r_length="271" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="531"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E346196" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57256" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
          <exon e_start="58378" e_stop="58443"/>
          <exon e_start="58528" e_stop="58789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCAC-TATTACTCTTGTTGAAATCTATGATCATATTTAT-AGCTTGTATTA-CTCATTTTCCTTATGC-TGCTCATAAA-TTTTGGAACTATA-TTTTCTTTAT-AAAGTTGTGAC-TTGATGATAA-CCTCTA</genome_strand>
        <mrna_strand>CCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTTATTACTCTTGTTGAAATCTATGATCATATTTATNAGCTTGTATTANCTCATTTTCCTTATGCNTGCTCATAAANTTTTGGAACTATANTTTTCTTTATAAAAGTTGTGACTTTGATGATAANCCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219821" ref_strand="+" ref_description="SGN-E219821 [cLEL-24-A11](-)">
      <seq>aaggtccagaaagggcaagtggtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgncctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtattactcattttccttatgctgctcataaattttggaactatattttctttataaagttgtgacttgatgataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57635" stop="59083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57935" g_stop="57997" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58378" g_stop="58443" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="129" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58528" g_stop="58783" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="386" r_length="257" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="404"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E219821" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57935" e_stop="57997"/>
          <exon e_start="58378" e_stop="58443"/>
          <exon e_start="58528" e_stop="58783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAG-CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</genome_strand>
        <mrna_strand>AAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................NCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219869" ref_strand="+" ref_description="SGN-E219869 [cLEL-24-A11](-)">
      <seq>atagttgacatagttgcagaggatggtaagcccgttagtgtggacacggcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtattactcattttccttatgctgctcataaattttggaactatattttctttataaagttgtgacttgatgataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58096" stop="59083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58396" g_stop="58443" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58528" g_stop="58783" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="305" r_length="257" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="306" polyA_stop="323"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E219869" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58396" e_stop="58443"/>
          <exon e_start="58528" e_stop="58783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAG-CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</genome_strand>
        <mrna_strand>ATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................GCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554695" ref_strand="+" ref_description="SGN-E554695 [cTSC-5-C11]">
      <seq>gtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62626" stop="50805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="108" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="409" r_length="301" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60220" i_stop="60075" i_length="146">
            <donor d_prob="0.964" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60074" g_stop="60038" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="446" r_length="37" r_score="0.622"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E554695" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
          <exon e_start="60074" e_stop="60038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTAGTCTTCTGTTATTTGTTAGAAGTTTAACTAAGACTCCGTGCGGCACTTGACAACTTACTCACGATTCTTTCATAAGAGAATATGAAGAAAGACTAAGAAAAGGCAAAGAGAACTTTAGAAAAAA</genome_strand>
        <mrna_strand>TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTCAAAAAAA..................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371591" ref_strand="-" ref_description="SGN-E371591 [TUS-29-G24]">
      <seq>ttggtcagtagggatttcagcgaaagaaactacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttccactatatttcaatttatgtcttgttatttagtcttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63104" stop="59862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62802" g_stop="62648" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="181" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="282" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60162" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="642" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="657"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E371591" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371591" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62802" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</genome_strand>
        <mrna_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288961" ref_strand="+" ref_description="SGN-E288961 [cLES-17-M22]">
      <seq>ctacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttccactatatttcaatttatgtcttgttatttagtcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63099" stop="59862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62799" g_stop="62648" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="253" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60162" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="613" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="614" polyA_stop="623"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E288961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62799" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</genome_strand>
        <mrna_strand>CTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391307" ref_strand="+" ref_description="SGN-E391307 [TUS-47-N5](-)">
      <seq>ttcatagccggtcatctgcggcgtctttggtgccacccccccgcatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaacctagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttccactatatttcaatttatgtcttgttatttagtcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62989" stop="59862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62689" g_stop="62655" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62654" i_stop="62523" i_length="132">
            <donor d_prob="0.456" d_score="0.00"/>
            <acceptor a_prob="0.324" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62522" g_stop="62514" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="45" r_length="9" r_score="0.333"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62513" i_stop="62321" i_length="193">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="146" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60521" g_stop="60162" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="506" r_length="360" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="516"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E391307" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62689" e_stop="62655"/>
          <exon e_start="62522" e_stop="62514"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAGCCG-TCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</genome_strand>
        <mrna_strand>TTCATAGCCGGTCATCTGCGGCGTCTTTGGTGCCAC....................................................................................................................................CCCCCCGCA.................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAACCTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551986" ref_strand="+" ref_description="SGN-E551986 [cTSB-2-H23]">
      <seq>gccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63029" stop="59892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62729" g_stop="62648" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="183" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60188" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="517" r_length="334" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E551986" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62729" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTC</genome_strand>
        <mrna_strand>GCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223973" ref_strand="+" ref_description="SGN-E223973 [cLEL-19-N4](-)">
      <seq>tgctcgtggcttgctattaaattcagtgctcaatcccttgctaacataaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62611" stop="50811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62311" g_stop="62220" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60521" g_stop="60188" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="426" r_length="334" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E223973" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62311" e_stop="62220"/>
          <exon e_start="60521" e_stop="60188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTC</genome_strand>
        <mrna_strand>TGCTCGTGGCTTGCTATTAAATTCAGTGCTCAATCCCTTGCTAACATAAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712978" ref_strand="+" ref_description="SGN-E712978 [FB06BE05]">
      <seq>cagcaaccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattacgtttttggtagtttgagctctttttatagggctattccgttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgctctgttcgtgaattcaggtttctctatccttccgacttccactatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63096" stop="59889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62796" g_stop="62648" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="250" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60189" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="583" r_length="333" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E712978" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62796" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTT</genome_strand>
        <mrna_strand>CAGCAACCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTACGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCCGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGCTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCGACTTCCACTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296287" ref_strand="-" ref_description="SGN-E296287 [cLET-19-C6](-)">
      <seq>actacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatcctttcaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63100" stop="59892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62800" g_stop="62648" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="254" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60190" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="586" r_length="332" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E296287" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296287" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62800" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATT</genome_strand>
        <mrna_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTTCAACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296425" ref_strand="+" ref_description="SGN-E296425 [cLET-19-C6]">
      <seq>actacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatcctttcaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63100" stop="59892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62800" g_stop="62648" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="254" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60190" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="586" r_length="332" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E296425" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62800" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATT</genome_strand>
        <mrna_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTTCAACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290792" ref_strand="+" ref_description="SGN-E290792 [cLET-10-I19]">
      <seq>actacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63100" stop="59892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62800" g_stop="62648" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="254" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60190" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="586" r_length="332" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E290792" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62800" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATT</genome_strand>
        <mrna_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308907" ref_strand="+" ref_description="SGN-E308907 [cLEY-23-D16]">
      <seq>ctatcatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62571" stop="59903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62271" g_stop="62220" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60521" g_stop="60195" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="379" r_length="327" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E308907" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62271" e_stop="62220"/>
          <exon e_start="60521" e_stop="60195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACT</genome_strand>
        <mrna_strand>CTATCATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224342" ref_strand="+" ref_description="SGN-E224342 [cLEL-19-N4](-)">
      <seq>catgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctatccttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60825" stop="59903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60521" g_stop="60203" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="325" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="340"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E224342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60521" e_stop="60203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAA</genome_strand>
        <mrna_strand>GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711234" ref_strand="+" ref_description="SGN-E711234 [FB01BF01]">
      <seq>gaaactacagcagccatttcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63103" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62803" g_stop="62648" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="258" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="559" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E711234" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62803" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTAC-AAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>GAAACTACAGCAGCCATTTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732177" ref_strand="+" ref_description="SGN-E732177 [LB01BH10]">
      <seq>cgatctacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63101" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62803" g_stop="62648" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="257" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="558" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="588"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E732177" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62803" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CGATCTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308531" ref_strand="+" ref_description="SGN-E308531 [cLEY-21-B14]">
      <seq>aaactacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63102" stop="59927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62802" g_stop="62648" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="256" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="557" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E308531" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62802" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733298" ref_strand="+" ref_description="SGN-E733298 [LB04CA06]">
      <seq>ctacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63099" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62799" g_stop="62648" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="253" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="554" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E733298" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62799" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289337" ref_strand="+" ref_description="SGN-E289337 [cLES-18-H4]">
      <seq>tacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63098" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62798" g_stop="62648" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="252" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="553" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E289337" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62798" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352564" ref_strand="+" ref_description="SGN-E352564 [cTOS-9-N13]">
      <seq>tacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaggtttctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63098" stop="59912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62798" g_stop="62648" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="252" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="553" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="572"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E352564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62798" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549254" ref_strand="+" ref_description="SGN-E549254 [TUS-68-L14](-)">
      <seq>cagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattcaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccggtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63096" stop="59922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62796" g_stop="62648" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="250" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="551" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="573"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E549254" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62796" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335155" ref_strand="+" ref_description="SGN-E335155 [cTOE-1-O24]">
      <seq>gtcgtcaccagcgaaccgacccacggcaacccgtcgacggcaaagccgtacaagcccttcgccggtcgcctcacaagctcttcctatagactactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagataccaagacttgctcgtggcttgctattatattcagtgcctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaacctacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcaccaaactcatttataagaaccattgctgtcaaacatgtnggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggttttntggtagtttgagctctttttatagggcttattcagttcttaagttgtaattgctcttagcaaaaactagacaatttattattgtggtgattttaaccgttctgttcgtgaattcagggtttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63086" stop="59917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62786" g_stop="62648" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="245" r_length="103" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="555" r_length="310" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="576"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E335155" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62786" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCACCAGCGAA-CGATCCACGGCAA-CCGTCGACGGCAAAGCCGTACAAG-CCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTA-CAAGATTTGCTCGTGGCTTGCTATTATATTCAGTG-CTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAA-CTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCA-CAAACTCATTTATAAGAA-CATTGCTGTCAAACATGT-GGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTT-TGGTAGTTTGAGCTCTTTTTATAGGGC-TATTCAGTTC-TAAGTTGTAATTGCTCTTAGCAAAAACTAGACAA-TTATTATTGTGGTGATATTAA-CGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>GTCGTCACCAGCGAACCGACCCACGGCAACCCGTCGACGGCAAAGCCGTACAAGCCCTTCGCCGGTCGCCTCACAAGCTCTTCCTATAGACTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACCAAGACTTGCTCGTGGCTTGCTATTATATTCAGTGCCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACCTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACCAAACTCATTTATAAGAACCATTGCTGTCAAACATGTNGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTNTGGTAGTTTGAGCTCTTTTTATAGGGCTTATTCAGTTCTTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTTATTATTGTGGTGATTTTAACCGTTCTGTTCGTGAATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226439" ref_strand="+" ref_description="SGN-E226439 [cLEL-26-P19](-)">
      <seq>cgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctacggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63042" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62742" g_stop="62648" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="497" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="508"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E226439" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62742" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTACGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226631" ref_strand="+" ref_description="SGN-E226631 [cLEL-26-P19](-)">
      <seq>tacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttataagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63040" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62740" g_stop="62648" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="194" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="495" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="506"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E226631" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62740" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTATAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223260" ref_strand="+" ref_description="SGN-E223260 [cLEL-14-I20](-)">
      <seq>cttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcggtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63010" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62710" g_stop="62648" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="466" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="479"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E223260" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62710" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTC-GTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207883" ref_strand="+" ref_description="SGN-E207883 [cLEC-34-C24]">
      <seq>agatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62616" stop="59922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62316" g_stop="62220" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="398" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="408"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E207883" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62316" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>AGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238839" ref_strand="+" ref_description="SGN-E238839 [cLEL-9-D11](-)">
      <seq>ctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62609" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62309" g_stop="62220" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="391" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="404"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E238839" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62309" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>CTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239357" ref_strand="+" ref_description="SGN-E239357 [cLEL-9-D11](-)">
      <seq>gcttgctattatattcagtgctcaatccccttgctaacatgaggaatatggaaaatgatcttatacagatctcaaatgccatgatgtttggtattatgggtctcatgacaaactcacttgggtgttggtccccggggaagcaagaaaatttgatcgaatatgtttcaggcacaaacntcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgccctgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62603" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62303" g_stop="62220" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="389" r_length="304" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="402"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E239357" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62303" e_stop="62220"/>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGCTATTATATTCAGTGCTCAAT-CCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACT-ACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAAT-TGTTTCAGGCACAAAC-TCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>GCTTGCTATTATATTCAGTGCTCAATCCCCTTGCTAACATGAGGAATATGGAAAATGATCTTATACAGATCTCAAATGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTCACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATATGTTTCAGGCACAAACNTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCCCTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378011" ref_strand="+" ref_description="SGN-E378011 [TUS-20-P4]">
      <seq>atggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60831" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60521" g_stop="60221" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="312" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="330"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E378011" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60521" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292593" ref_strand="+" ref_description="SGN-E292593 [cLET-16-H18]">
      <seq>tttggtattatgggtttcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60820" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60520" g_stop="60221" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E292593" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60520" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TTTGGTATTATGGGTTTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292592" ref_strand="+" ref_description="SGN-E292592 [cLET-16-H16]">
      <seq>tttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60820" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60520" g_stop="60221" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E292592" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60520" e_stop="60221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG</genome_strand>
        <mrna_strand>TTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285461" ref_strand="-" ref_description="SGN-E285461 [cLES-10-E2]">
      <seq>gatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgcggtgatctaacgttctgttcgtgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63013" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62713" g_stop="62648" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="167" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60223" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="465" r_length="298" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E285461" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285461" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62713" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTC</genome_strand>
        <mrna_strand>GATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGCGGTGAT-CTAACGTTCTGTTCGTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345550" ref_strand="+" ref_description="SGN-E345550 [cTOF-18-N11]">
      <seq>aaactacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctggttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63102" stop="59928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62802" g_stop="62648" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="256" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60228" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="551" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E345550" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62802" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCT-GTTCGTG</genome_strand>
        <mrna_strand>AAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGGTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232071" ref_strand="+" ref_description="SGN-E232071 [cLED-7-J3]">
      <seq>ggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattattgtggtgatattaacgttctgttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60817" stop="59929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60517" g_stop="60229" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E232071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60517" e_stop="60229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGT</genome_strand>
        <mrna_strand>GGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312577" ref_strand="+" ref_description="SGN-E312577 [cLEZ-20-G18]">
      <seq>agcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtaattgctcttagcaaaaactagacaattattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63095" stop="59954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62795" g_stop="62648" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="249" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60254" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="517" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E312577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62795" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATT</genome_strand>
        <mrna_strand>AGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271348" ref_strand="+" ref_description="SGN-E271348 [cLEM-5-E9]">
      <seq>tacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatgaagttaaagattaggtttttggtagtttgagctctttttatagggctattcagttctaagttgtnattgctcttagcaaaaactagacaattattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63098" stop="59955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62798" g_stop="62648" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="252" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60255" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="519" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E271348" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62798" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTAT</genome_strand>
        <mrna_strand>TACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTNATTGCTCTTAGCAAAAACTAGACAATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341041" ref_strand="+" ref_description="SGN-E341041 [cTOE-22-C23]">
      <seq>agcatccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63095" stop="60051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62795" g_stop="62648" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="249" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60351" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="420" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E341041" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62795" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGA</genome_strand>
        <mrna_strand>AGCATCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272379" ref_strand="+" ref_description="SGN-E272379 [cLEM-19-A20]">
      <seq>agccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgtttcaggcacaaactcatttataagaacattgctgtcaaacatgtggatgttgtcctgaaatatttgcactgttatgatgtttctgagctaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63092" stop="60051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62792" g_stop="62648" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="246" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60351" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="417" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E272379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62792" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGA</genome_strand>
        <mrna_strand>AGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290715" ref_strand="+" ref_description="SGN-E290715 [cLET-10-I18]">
      <seq>actacagcagccatgtcgtcaccagcgaacgatccacggcaaccgtcgacggcaaagccgtacaagccttcgccggtcgctccacaagatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttagatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatgatcttaagcagatctcaatggccatgatgtttggtattatgggtctcatgacaaactacttgggtgttggtccccggggaagcaagaaaatttgatcgaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63100" stop="60146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62800" g_stop="62648" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="254" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60521" g_stop="60446" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="330" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E290715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62800" e_stop="62648"/>
          <exon e_start="62320" e_stop="62220"/>
          <exon e_start="60521" e_stop="60446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGATGTAAGTTCAGCTGTTTGATTAATTGTATTGAGAGCTATATATGTTGTTATTGTATGTTAGATATATCTTTACAGGTATTATTCGGAGATGTTCTCCTAGTTTGTGGAAGGGAATTTAAATTCTAAATTTGGATTCTGCTCTTGCTAAAGTTGTGTTCCTTGGATTGAACCTGTTCTTGATTGTGAAATAAACAAATATTGGCTGATACTGATATGTATTGAAAGGTATAAGGGGATGAGATATTATCAGGAAAATCCATCCAAGGGAACTCACCAGAAGTATTATTAGAGTCTTAAGTTTTTTAAGAATAGTACGAACTTGCTTCAATTGATGCTCTTATTATTGCACTACTTGCTAAATACAATTTTCAGTGTAATTATTTGCTACTCCTGCATTTATACAAGAAGGTGTCAAACCTGGAAGTAATTTTAATTTCAAAATATCATGAAATGATTCTTCAATAATATGTTTGTTTTGAATGGTCAGTGGGGTGTTTCTTGGATTTGCATTGAGCACATCAGTTTGAAGTAAATTTAGCTACATTTTACAAAATGTCAGTTGTAGATGGTTATGTGTATGCCTATGGATTTTAACCTTATTTTAAACGGTTGATCTCTGGAATGCAATTTTATTTTATGATAATTACCCAACGACACAGTTATTCAGCAGCCATTCAATGATTAGATTAAAAGAAGGGGAGAACTTTTTAATAGAATATTTCATGTCTCGTTTGATCTTCTAAAAAAAATTGGCATGTGATTTGAATTATACCTGTAAAAAAGATATTTGAATGTTTCATTAATGTGTGGTTTGTATGGAATGGGATGAAGAGACAATAACGATGAATTATTTTCCTTCATTAAGAAAAAGAAGGATAATTTCAAAAAAATAAATAAAGGTAGGAACCCTAAGAATATATTGAACGTGGTAAGATGAGTTTGAGTTGTCACTGTGGCTCTGTATTGTTCTCTGCTCCAAAATTACTCAAGCCCAACTAGTCAACAAATTTTGGGAGTTAAAGGAATATATATTGTCTCAGAAAGGTGTAAAAGATAGTGTTCACTTGTGTGGGTCATTTGCAACTTTTGTAGGAGTTAATTTGTAATGAGATACTTTTGGAGTGTTGTTTCTTTTACCTTTTTTGCTGTCCAAAGAACAGAAATTGTAGGAAGTTAATTGTGCATTACTCGTTTCCCTTCTCCTGCAACCAAATAGTACCTATGAGCCTTTATATGCCCATGTGTTCTTTTTTATGTCTAAAAAACAATTTAGTAGTAAGGCATCGTCTTCACCCACCTTACCACCACCCTCTGCTTCCGTTGCCAGTTTCTAGAATGGTTGTGCCCAATGTCTAGTAGTCTAGTTTATGCTTTATACTATATGTTAGTTATGAGTAAGGTAGTAAAGTAGATTGGATTCTCAATTATTAGTAAGGTAATGTTACAGATCTGGAAACTAAACAAATAGATATTATTAGTTCTATCAGTCTTGTAATTGTAAATGATAAATGAATCGTTGCCAAAGAATAGTGTGTTTGACTGGCTAAAGAGTTATTAGATCAAACGAAATGGAAAGAGAGTATTCATGAAGCATAAAAGAATTTATTGCAAACTGATTGTTCTGCTATTAGCTATCACATTTTCATTCATATTTCTGGATTGTGTGTCTAATCAGAACTTGTTATTTTTATCGTCTCAGGTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGT</genome_strand>
        <mrna_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391037" ref_strand="+" ref_description="SGN-E391037 [TUS-47-N5]">
      <seq>actacagcaggcatcttgtcagcagcgaacgatccacggcaaccgtcgacggcaaagccgcacaagccttcgcagggcgctccacaatatcttcctatagattactccggcttcatagccgtcatctgcggcgtctttggtgccatgtttatatacaagatttgctcgtggcttgctattatattcagtgctcaatcccttgctaacatgaggaatatggaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63100" stop="61947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62800" g_stop="62648" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="62247" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="227" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E391037" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62800" e_stop="62648"/>
          <exon e_start="62320" e_stop="62247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGAGTGCGTAGCCTTCTAAATTCTGTATATTTTTGTACCTATACTCGACAATTTTTATCTAATTTGGTCATATTGAGGATTTTATCTATAAAATTATATTGGAAAACCCGCTCTTAATTCCCATCCAGAACGAAGGAATATCCTGGATTTAATTTTTTGGGGAATCGAGTTAGGTACATACAAAGCTTTGGGCTGTTAATTCACGAGATCCACTGCTCTTATCTGTATTTGTACTGATTAGATCTCATGTGCATATGTCGATTATGTTTGGTGGAAAGTTAATTTACATAATTGTATGCTCAGCATCATTTACTCTTATCTGTTTTGTAGTACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGA</genome_strand>
        <mrna_strand>ACTACAGCAGGCATCTTGTCAGCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGCACAAGCCTTCGCAGGGCGCTCCACAATATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTATA.......................................................................................................................................................................................................................................................................................................................................TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372079" ref_strand="+" ref_description="SGN-E372079 [TUS-30-J24](-)">
      <seq>tgatcgtaatatgccttgtgatgacaaagaactgcttctcaaagggtgcattacttctcagaggattaataaacatgattttgccaaaacattagaagagttacagggaagagcgaggagattggaaagtgattttatgagactggacaagagagcatcggtattagatgtgacagtggatgggcaagaccaagagaagttcggcgttattaatcggtatgctaggtttcttggtcgggcgcaatatgatggtattcctcagagatacgtcacagcgcttccaataccaaaagatctgcctagtggggtgcactgtctttctctataatcacaaatcaattgaatcttttctgtgctctgtcatcaattacctcaacttcccgtagacatttttgtcctagtcatgtactagttctagcaagagcaaaatagaaccacacaatcagtattgctgaacatactcaattgtcatctcagatggaacgtagctgtccaatcttttgcatgtaggccatttatgtcattatcaagaaaatatacatgtacatctcttcaaacttagtgaggggaggtgaaactagggtgccccatcattttttgccagaagtggggagagaatacatacttctgtgcttttaagctgttgacatacagttggccatcattatgtataagagatgcccaggcgctcataattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75086" stop="70890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74786" g_stop="74754" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74753" i_stop="74667" i_length="87">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74666" g_stop="74559" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="141" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74558" i_stop="71748" i_length="2811">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71747" g_stop="71191" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="698" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E372079" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74786" e_stop="74754"/>
          <exon e_start="74666" e_stop="74559"/>
          <exon e_start="71747" e_stop="71191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCGTAATATGCCTTGTGATGACAAAGAACTGTGAGTTCTCTAGTTGCATGAGATTATTCAACTGTCTTTTGTTTTTTTGTTCTTCTGATCCTAATGATACATTTAATGCAATTGTAGGCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAGGTAATGCTTGATGTTTCAGTTTCAGTTTCTATATTTTTTCTCCAGTTACACCATTTTGCTGAATATTGTTGATTGCGCACGGCTATAGGCCTATAGCAGATGAGTTTCTTTACAGCTTGTTTTGATGGTTGTTACTTATTGTATTGTTTTGTATTATAGAAAATAATAATTAGAGGGGGCATACAAACAAGTGATAACTAATTTTGCAAAAGAGCAATTTTTGTGAGATGCAATGGTAAATAATATTTTAAATTCGATACTTGAAATGAGCTAATGTCCATGTGGGTGCACATGCTAATTCTACAAATTATATTTCATGATGCAAAGTGAGCTGTTGGTTAATGTTATTTATTAAGTAATACCATATTTTTTTTCATTGAGCTAGCTAAATAGGAATATCATTCATTATTTTTGGTAAACTTACACTTTTTTCTTAATCTTTTTCTTTTTGAATTTCATCGATCTATATTTTAAATTTTTGTTTTAAAGTCAAATACATTGTTTTTGATAGTGATACTAATGTAACTTAAAAGAAATTGTGCAGTCATTGATATGGATACTTGAGCTAAATTGACTACCTAAATGGAATTAACATTCATCATTTTTAAGGAACTTAAACTTTTTCATTTGATTTAAGTTTATTTTATAGCACAATACATAGTTCAATATATTTATGAGTTTTTTCAAATATATTCATTAATATAGGGTTCATGTGCAAAGCGATATTGAAAAGCATGAAGGCAGATAACAAAATTTTGTTCATCTTTTTAACCCCTTAAATTTGATCTCACACTTGATAAAATAGTAATTTAATTATAACCCTAATACTTAGGACTTTGAGATCAACTAAAATTTGATATTAAATCATTCCTTATTTGAACTAAGTAAGAACTCCTATTATTTAGAAATTTATGATCATGCAAGAGTTTTACTTGAACAAAAGTTTTCCTTATTTCCTGCTTCACATTTAATTTGCTTTTTAAGTATCTTACGTCTGAGTTATTTATGATTTATTTTATATTAGTTTAGTTTTGGTTTAAAATTAAGATTTGTTGAGTCCAATTTAAAAAGTCACATCATATCTAAAGAATGCATCTTCTAATAAGCTGCTAATTTGGGTATAAACACTGAATATTAATAGTCTCAACCCCTTTCCTAATATGGATATTTATTATTACTCTATTCGTATAATTAGTAAACATTGCTAAATATTTTATTTTTTGTAGTATCTCTCTAATAACATTAAATTCATTTAAAACATTATAAAATATTGATGTTCAAAAGAATTATAATTTGAATTGAATCTCTTGACCTCAACTTCAATTGTGTTGGACCTAAGATTGAGTATTGTTGACTCGCATCAGCTAAGGTAGCCTGCTCGTTAATCACTTTCCCTGCATGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAATTGTATATTTATTCTTACCACTTGCCCTGCGCGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAAATTGTATATTTATTCTTACATTGAGATTACCTATTAATAGTGGTCTGTCCCTGCATTAGCAATTGATACATTATAATTGGATAAGTTATTAGAAATATGATTTGATGAAAGACCAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACACACACATATATATATATATATATATGTATATATGTATATATATATATGTGTGTGTGTGTATATATATATATATATAAATATAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGGATAAGTTATTAGAAATATGATTTGATGAAAGACTAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACAATTTACCTCTTTGTCAATAGACTTCATATATATATATATATATATATATATATATATAAAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGTGTTGTTCGAATTTATGTTCTTTGTCAATATTTAATTATAGCATTTCGTCCTATTAGTGCTTGCATAATATGTTGGAGGTTCTGTATGTCATGATTTCTTCTCCTTTATTGATCTAACTAATATGGTAACATTTCTTTTCAATTAATGAAGTTGCATCTACTTAGTGTCATTTTCTATTTTTACATAATTCACTTTTCTTATATACAATCTTTTTAGTTGACGCAATACACCCATGTATACTGAAACTAGTTACTAAATAAAGCTTAATTTGTTAATTATGTAGATACTACATGTAGTGCTAAATTTTAATGATGGATATGTAAATCTAAGATTTACAAAGAACAATTTCAGAAATTCAAGGTTTACTTTGAACTGTGATGGCGCTTTTGCTTCTGATTTTGCACCTCTAAAAATATATACAGCTGATGATAGGTCTTAAACCATGATCTTTCACTCCATTAGAAAATGAGGGCAAAGTGCTAACTGTACTTACTGGTTGGTTACGTATAAACTTGGATTTTTTATTAGGAAATCCACACTTCTCAAGTCTTAAATGTCTACTGTCATTTGACTTGCTATTAGTTTTTGGACATTCATTTTATCTTTTGATGTTTCAGTTTTACACTTCCCATTATATTATATTAATACTGTCTGCTTTACTAGCTTCCTTTTTTACCTGAAAAAGATATGTTAATTCTGCTTGATTAGTTTTGTTTGCTTTCTAATTTGTTCCTTCTCTGATCAGACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATCAATTACCTCAACTTCCCGTAGACATTTTTGTCCTAGTCATGTACTAGTTCTAGCAAGAGCAAAATAGAACCACACAATCAGTATTGCTGAACATACTCAATTGTCATCTCAGATGGAACGTAGCTGTCCAATCTTTTGCATGTAGGCCATTTATGTCATTATCAAGAAAATATACATGTACATCTCTTCAAACTTAGTGAGGGGAGGTGAAACTAGGGTGCCCCATCATTTTTTGCCAGAAGTGGGGAGAGAATACATACTTCTGTGCTTCTAAGCTGTTGACATACAGTTGGCCATCATTATGTATAAGAGATGCCCAGGCGCTCATAATTG</genome_strand>
        <mrna_strand>TGATCGTAATATGCCTTGTGATGACAAAGAACT.......................................................................................GCTTCTCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATCAATTACCTCAACTTCCCGTAGACATTTTTGTCCTAGTCATGTACTAGTTCTAGCAAGAGCAAAATAGAACCACACAATCAGTATTGCTGAACATACTCAATTGTCATCTCAGATGGAACGTAGCTGTCCAATCTTTTGCATGTAGGCCATTTATGTCATTATCAAGAAAATATACATGTACATCTCTTCAAACTTAGTGAGGGGAGGTGAAACTAGGGTGCCCCATCATTTTTTGCCAGAAGTGGGGAGAGAATACATACTTCTGTGCTTTTAAGCTGTTGACATACAGTTGGCCATCATTATGTATAAGAGATGCCCAGGCGCTCATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358478" ref_strand="+" ref_description="SGN-E358478 [cLHT-35-D23]">
      <seq>ctagagctgctaatagacttactgaaaaggttatagaagacattggttttaatgaggaaggggccccaggggttaaagctaaaagaagggctatattgaccactcagcttatgcagcaactactcccctctccccctgcagcaattctttctgcagaagctaattcagagtatgagagtgtgggttactccatctctagatcgtcattgggggatgcatgtagcatgctttcttgctcaaatgctgatcgtaatatgccttgtgatgacaaagaactgcttcccaaagggtgcattacttctcagaggattaataaacatgattttgccaaaacattggaagagttacagggaagagcgaggagattggaaagtgattttatgagactggacaagagagcatcggtattagatgtgacagtggatgggcaagaccaagagaagttcggcgttattaatcggtatgctaggtttcttggtcgggggcaatatgatggtattcctcagagatacgtcacagcgcttccaataccaaaagatctgcctagtggggtgcactgtctttctctataatcacaaatgaattgaatcttttctgtgctctgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75410" stop="71224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75110" g_stop="75082" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75081" i_stop="75002" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75001" g_stop="74754" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="277" r_length="248" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74753" i_stop="74667" i_length="87">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74666" g_stop="74559" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="385" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74558" i_stop="71748" i_length="2811">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71747" g_stop="71524" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="609" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E358478" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75110" e_stop="75082"/>
          <exon e_start="75001" e_stop="74754"/>
          <exon e_start="74666" e_stop="74559"/>
          <exon e_start="71747" e_stop="71524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGCTGCTAATAGGCTTACTGAAAAGGTATAATGAACTGACTGCTATAATCCTCCTGATTTCATTATTAGTTGCCTTACTTTTAACAGCCTGTACTTCTCTCTTAGGTTATAGAAGGCATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGCAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACTGTGAGTTCTCTAGTTGCATGAGATTATTCAACTGTCTTTTGTTTTTTTGTTCTTCTGATCCTAATGATACATTTAATGCAATTGTAGGCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAGGTAATGCTTGATGTTTCAGTTTCAGTTTCTATATTTTTTCTCCAGTTACACCATTTTGCTGAATATTGTTGATTGCGCACGGCTATAGGCCTATAGCAGATGAGTTTCTTTACAGCTTGTTTTGATGGTTGTTACTTATTGTATTGTTTTGTATTATAGAAAATAATAATTAGAGGGGGCATACAAACAAGTGATAACTAATTTTGCAAAAGAGCAATTTTTGTGAGATGCAATGGTAAATAATATTTTAAATTCGATACTTGAAATGAGCTAATGTCCATGTGGGTGCACATGCTAATTCTACAAATTATATTTCATGATGCAAAGTGAGCTGTTGGTTAATGTTATTTATTAAGTAATACCATATTTTTTTTCATTGAGCTAGCTAAATAGGAATATCATTCATTATTTTTGGTAAACTTACACTTTTTTCTTAATCTTTTTCTTTTTGAATTTCATCGATCTATATTTTAAATTTTTGTTTTAAAGTCAAATACATTGTTTTTGATAGTGATACTAATGTAACTTAAAAGAAATTGTGCAGTCATTGATATGGATACTTGAGCTAAATTGACTACCTAAATGGAATTAACATTCATCATTTTTAAGGAACTTAAACTTTTTCATTTGATTTAAGTTTATTTTATAGCACAATACATAGTTCAATATATTTATGAGTTTTTTCAAATATATTCATTAATATAGGGTTCATGTGCAAAGCGATATTGAAAAGCATGAAGGCAGATAACAAAATTTTGTTCATCTTTTTAACCCCTTAAATTTGATCTCACACTTGATAAAATAGTAATTTAATTATAACCCTAATACTTAGGACTTTGAGATCAACTAAAATTTGATATTAAATCATTCCTTATTTGAACTAAGTAAGAACTCCTATTATTTAGAAATTTATGATCATGCAAGAGTTTTACTTGAACAAAAGTTTTCCTTATTTCCTGCTTCACATTTAATTTGCTTTTTAAGTATCTTACGTCTGAGTTATTTATGATTTATTTTATATTAGTTTAGTTTTGGTTTAAAATTAAGATTTGTTGAGTCCAATTTAAAAAGTCACATCATATCTAAAGAATGCATCTTCTAATAAGCTGCTAATTTGGGTATAAACACTGAATATTAATAGTCTCAACCCCTTTCCTAATATGGATATTTATTATTACTCTATTCGTATAATTAGTAAACATTGCTAAATATTTTATTTTTTGTAGTATCTCTCTAATAACATTAAATTCATTTAAAACATTATAAAATATTGATGTTCAAAAGAATTATAATTTGAATTGAATCTCTTGACCTCAACTTCAATTGTGTTGGACCTAAGATTGAGTATTGTTGACTCGCATCAGCTAAGGTAGCCTGCTCGTTAATCACTTTCCCTGCATGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAATTGTATATTTATTCTTACCACTTGCCCTGCGCGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAAATTGTATATTTATTCTTACATTGAGATTACCTATTAATAGTGGTCTGTCCCTGCATTAGCAATTGATACATTATAATTGGATAAGTTATTAGAAATATGATTTGATGAAAGACCAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACACACACATATATATATATATATATATGTATATATGTATATATATATATGTGTGTGTGTGTATATATATATATATATAAATATAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGGATAAGTTATTAGAAATATGATTTGATGAAAGACTAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACAATTTACCTCTTTGTCAATAGACTTCATATATATATATATATATATATATATATATATAAAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGTGTTGTTCGAATTTATGTTCTTTGTCAATATTTAATTATAGCATTTCGTCCTATTAGTGCTTGCATAATATGTTGGAGGTTCTGTATGTCATGATTTCTTCTCCTTTATTGATCTAACTAATATGGTAACATTTCTTTTCAATTAATGAAGTTGCATCTACTTAGTGTCATTTTCTATTTTTACATAATTCACTTTTCTTATATACAATCTTTTTAGTTGACGCAATACACCCATGTATACTGAAACTAGTTACTAAATAAAGCTTAATTTGTTAATTATGTAGATACTACATGTAGTGCTAAATTTTAATGATGGATATGTAAATCTAAGATTTACAAAGAACAATTTCAGAAATTCAAGGTTTACTTTGAACTGTGATGGCGCTTTTGCTTCTGATTTTGCACCTCTAAAAATATATACAGCTGATGATAGGTCTTAAACCATGATCTTTCACTCCATTAGAAAATGAGGGCAAAGTGCTAACTGTACTTACTGGTTGGTTACGTATAAACTTGGATTTTTTATTAGGAAATCCACACTTCTCAAGTCTTAAATGTCTACTGTCATTTGACTTGCTATTAGTTTTTGGACATTCATTTTATCTTTTGATGTTTCAGTTTTACACTTCCCATTATATTATATTAATACTGTCTGCTTTACTAGCTTCCTTTTTTACCTGAAAAAGATATGTTAATTCTGCTTGATTAGTTTTGTTTGCTTTCTAATTTGTTCCTTCTCTGATCAGACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATC</genome_strand>
        <mrna_strand>CTAGAGCTGCTAATAGACTTACTGAAAAG................................................................................GTTATAGAAGACATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGTAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACT.......................................................................................GCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTGGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGGGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATGAATTGAATCTTTTCTGTGCTCTGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372080" ref_strand="+" ref_description="SGN-E372080 [TUS-30-J24]">
      <seq>tttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcatcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggtacttttccaccacctcagcaagcttttggctctcagtatagcaaggattcttctcatattttccaatcacatcaaatgaatattgtggagtcgtcattatctgctcctgggaggcaaagtgatcaatacttgaatagaggtagttttgcatcccagattggtactagctcagtgaattccctggtttcttctgaaggggaagaacagcgaccaaaggaaagtcattctcagcaaatatcagtgacaaatgttgaccacatccagaagatgaatgattcacagggtagagaaccttttatcaagtatatcttgggaggatctgctgcaaatgctgcatctatgcagagagatattgaagcctttggccgaactttgaagcccaacctttcaaatcagaactattccctattaaaccaagtgcaggctatcaaacatgtggaggtcgatccaagcaatagggacttcaagagaatgaaagtagcagacagcagtacaggtgctccacaattttcttctggggacactgaaatgttgggagtctctgtgccagaggatttgcaaagaagcatttcatctcaacaagggagaaaaatgtctcctcatgatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76765" stop="75447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76465" g_stop="75747" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E372080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76465" e_stop="75747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTGAAGCCCAACCTTTCAAATCAGAACTATTCCCTATTAAACCAAGTGCAGGCTATCAAACATGTGGAGGTCGATCCAAGCAATAGGGACTTCAAGAGAATGAAAGTAGCAGACAGCAGTACAGGTGCTCCACAATTTTCTTCTGGGGACACTGAAATGTTGGGAGTCTCTGTGCCAGAGGATTTGCAAAGAAGCATTTCATCTCAACAAGGGAGAAAAATGTCTCCTCATGATGTACT</genome_strand>
        <mrna_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTGAAGCCCAACCTTTCAAATCAGAACTATTCCCTATTAAACCAAGTGCAGGCTATCAAACATGTGGAGGTCGATCCAAGCAATAGGGACTTCAAGAGAATGAAAGTAGCAGACAGCAGTACAGGTGCTCCACAATTTTCTTCTGGGGACACTGAAATGTTGGGAGTCTCTGTGCCAGAGGATTTGCAAAGAAGCATTTCATCTCAACAAGGGAGAAAAATGTCTCCTCATGATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285589" ref_strand="+" ref_description="SGN-E285589 [cLES-5-O17]">
      <seq>tttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcatcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggtacttttccaccacctcagcaagcttttggctttcagtatagcaaggattcttctcatattttccaatcacatcaaatgaatattgtggagtcgtcattatctgctcctgggaggcaaagtgatcaatacttgaatagaggtagttttgcatcccagattggtactagctcagtgaattccctggtttcttctgaaggggaagaacagcgaccaaaggaaagtcattctcagcaaatatcagtgacaaatgttgaccacatccagaagatgaatgattcacagggtagagaaccttttatcaagtatatcttgggaggatctgctgcaaatgctgcatctatgcagagagatattgaagcctttggccgaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76765" stop="75683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76465" g_stop="75983" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E285589" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76465" e_stop="75983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTG</genome_strand>
        <mrna_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTTTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211315" ref_strand="+" ref_description="SGN-E211315 [cLEC-70-L11]">
      <seq>aggaagtaccaataatgtaacttctatgtatgcaatgcccggaaacctttctccagcgtttgattctcattctggttttccctataggggaggtcagcttaaaattccaaatgtggctaggactactgcacaactcccaacaaatcaatccttgagtgtatcctttgataagcatgcttcctctcatacagagaaaggtgactcttgcagaggatctgcaaatggtcagtctgtggaggcttccttgctggctggggctgacaagttgcaagataagcctattctctccgcagacaagtctcaattgagtaacaccaatcgtacagtggaaagtatctttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcatcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggtacttttccaccacctcagcaagcttttggctctcagtatagcaaggattcttctcatattttccaatcacatcaaatgaatattgtggagtcgtcattatctgctcctgggaggcaaagtgatcaatacttgaatagaggtagttttgcatcccagattggtactagctcagtgaattccctgggttcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77102" stop="75865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76802" g_stop="76165" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E211315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76802" e_stop="76165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTG</genome_strand>
        <mrna_strand>AGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGGTTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739516" ref_strand="+" ref_description="SGN-E739516 [LC17DB04]">
      <seq>cttttactcacattcacctaataaagctgcggaatctagtccaaacatgctacagcttattcagaaggtggaccagtcgagagagtgtggttccggggcagagttaggtcattctgaaaaaaaagcatcatctaggatgcctgaagcagcagagaattctgatgagtctgttggtcatcacctgaggagtcagtctgctttctctcaaggctatggtctacaacttggccctccatcccgacgtgcatcagtccgaacccattctttgacatctcagcgcccgatccaagcttttagctcttcacattatagtcatgctactgttgacactggtgagaagaatcaaggaccaatgcacccccctcatcaggctccatccgtactttcaccttctgatccatcccaggaaggattgaagaatataggatttggtattgcaggaagtaccaataatgtaacttctatgtatgcaatgcccggaaacctttctccagcgtttgattctcattctggttttccctataggggaggtcagcttaaaattccaaatgtggctaggactactgcacaactcccaacaaatcaatccttgagtgtatcctttgataagcatgcttcctctcatacagagaaaggtgactcttgcagaggatctgcaaatggtcagtctgtggaggcttccttgctggctggggctgacaagttgcaagataagcctattctctccgcagacaagtctcaattgagtaacaccaatcgtacagtggaaagtatctttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcctcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77742" stop="76057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77442" g_stop="77403" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77402" i_stop="77202" i_length="201">
            <donor d_prob="0.916" d_score="0.95"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77201" g_stop="76357" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="884" r_length="845" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E739516" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77442" e_stop="77403"/>
          <exon e_start="77201" e_stop="76357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGACTCACATTCACCTAATAAAGCTGCGGAATCTAGGTAGTTAATTTGCTGATTCTCAGAACTATTAGCAATGGTTATGGATACATTTTGATAGATCCTGTACGATTTAGATGTTCTTTTGTACGTATCTTTACATGTGTATTAAAACCTTGTTGACGGTCAAGTTGAGCTGTATAAACTACTTTGCGGTGCCTTCTCTTTCTGGCTTCAATGTTTAAACTGTTTCTATTCTTGCAGTCCAAACATGCTACAGCTTATTCAGAAGGTGGACCAGTCGAGAGAGTGTGGTTCCGGGGCAGAGTTAGGTCATTCTGAAAAAAAAGCATCATCTAGGATGCCTGAAGCAGCAGAGAATTCTGATGAGTCTGTTGGTCATCACCTGAGGAGTCAGTCTGCTTTCTCTCAAGGCTATGGTCTACAACTTGGCCCTCCATCCCGACGTGCATCAGTCCGAACCCATTCTTTGACATCTCAGCGCCCGATCCAAGCTTTTAGCTCTTCACATTATAGTCATGCTACTGTTGACACTGGTGAGAAGAATCAAGGACCAATGCACCCCCCTCATCAGGCTCCATCCGTACTTTCACCTTCTGATCCATCCCAGGAAGGATTGAAGAATATAGGATTTGGTATTGCAGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTA</genome_strand>
        <mrna_strand>CT-TTTACTCACATTCACCTAATAAAGCTGCGGAATCTAG.........................................................................................................................................................................................................TCCAAACATGCTACAGCTTATTCAGAAGGTGGACCAGTCGAGAGAGTGTGGTTCCGGGGCAGAGTTAGGTCATTCTGAAAAAAAAGCATCATCTAGGATGCCTGAAGCAGCAGAGAATTCTGATGAGTCTGTTGGTCATCACCTGAGGAGTCAGTCTGCTTTCTCTCAAGGCTATGGTCTACAACTTGGCCCTCCATCCCGACGTGCATCAGTCCGAACCCATTCTTTGACATCTCAGCGCCCGATCCAAGCTTTTAGCTCTTCACATTATAGTCATGCTACTGTTGACACTGGTGAGAAGAATCAAGGACCAATGCACCCCCCTCATCAGGCTCCATCCGTACTTTCACCTTCTGATCCATCCCAGGAAGGATTGAAGAATATAGGATTTGGTATTGCAGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCCTCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286663" ref_strand="+" ref_description="SGN-E286663 [cLES-12-P19]">
      <seq>gcaacttctccttcgaagttcgatctaccctcctccgattgcttccatttcacgtcggacctagggttccgatgatctcatccacaagttttcaatgcctttgattttctattctgcgaagaatgacaaattttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaagcatggcagtgcactcctaggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92834" stop="95387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93134" g_stop="93570" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="0.98"/>
            <acceptor a_prob="0.604" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95087" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="540" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E286663" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93134" e_stop="93570"/>
          <exon e_start="94985" e_stop="95087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTTCTCCTTCGAAGTTCGATCTACCCTCCTCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTAC</genome_strand>
        <mrna_strand>GCAACTTCTCCTTCGAAGTTCGATCTACCCTCCTCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCTAGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245485" ref_strand="+" ref_description="SGN-E245485 [cLEF-43-D11]">
      <seq>tccgattgcttccatttcacgtcggacctaaggttccgatgatctcatgcacaagttggcaatgcctttgattttctattctgcgaagaatgacaaattttagtggagcattttccattactgaagcttcatcttccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccacggaagcaggtggcttggaatcttttatcggtgtttgcaacgtctgcaatgctatttctggagattagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92867" stop="95373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93167" g_stop="93570" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95073" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="493" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E245485" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93167" e_stop="93570"/>
          <exon e_start="94985" e_stop="95073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCAT</genome_strand>
        <mrna_strand>TCCGATTGCTTCCATTTCACGTCGGACCTAAGGTTCCGATGATCTCATGCACAAGTTGGCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTTCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCACGGAAGCAGGTGGCTTGGAATCTTTTATCGGTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302402" ref_strand="+" ref_description="SGN-E302402 [cLEW-27-H16]">
      <seq>gattgcttccatttcacgtcggacctagggttccgatgatctcatccacaagttttcaatgcctttgattttctattctgcgaagaatgacaaattttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92870" stop="95471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93170" g_stop="93570" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95171" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="588" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E302402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93170" e_stop="93570"/>
          <exon e_start="94985" e_stop="95171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTAT</genome_strand>
        <mrna_strand>GATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335647" ref_strand="+" ref_description="SGN-E335647 [cTOE-8-F17]">
      <seq>ggtcggacctagggttccgatgatctcatccaccaagttttcaatgcctttgattttctattctgcgaagaatgaccaaattttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaacctgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttataacgtactttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92887" stop="95437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93186" g_stop="93570" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95137" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="541" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E335647" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93186" e_stop="93570"/>
          <exon e_start="94985" e_stop="95137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGGACCTAGGGTTCCGATGATCTCATCCA-CAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGA-CAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAA-CTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATG</genome_strand>
        <mrna_strand>GGTCGGACCTAGGGTTCCGATGATCTCATCCACCAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACCAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACCTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATAACGTACTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701041" ref_strand="+" ref_description="SGN-E701041 [FA14DE04]">
      <seq>gttttcaatgcctttgattttctattctgcgaagaatgacaaattttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgntatcactcgctttatcttccatttcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92921" stop="97400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93221" g_stop="93570" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95176" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="542" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95177" i_stop="96590" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96591" g_stop="96750" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="702" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96850" g_stop="96952" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="805" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97047" g_stop="97100" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="859" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E701041" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93221" e_stop="93570"/>
          <exon e_start="94985" e_stop="95176"/>
          <exon e_start="96591" e_stop="96750"/>
          <exon e_start="96850" e_stop="96952"/>
          <exon e_start="97047" e_stop="97100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTA</genome_strand>
        <mrna_strand>GTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGNTATCACTCGCTTTATCTTCCATTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316338" ref_strand="+" ref_description="SGN-E316338 [cTOA-25-O11]">
      <seq>ttttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92964" stop="97025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93264" g_stop="93570" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95176" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="499" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95177" i_stop="96590" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96591" g_stop="96725" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="634" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E316338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93264" e_stop="93570"/>
          <exon e_start="94985" e_stop="95176"/>
          <exon e_start="96591" e_stop="96725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTC</genome_strand>
        <mrna_strand>TTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315609" ref_strand="+" ref_description="SGN-E315609 [cTOA-22-D5]">
      <seq>ttttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaagagcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92964" stop="93773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93264" g_stop="93473" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E315609" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93264" e_stop="93473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACAT</genome_strand>
        <mrna_strand>TTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAAGAGCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346993" ref_strand="+" ref_description="SGN-E346993 [cTOF-25-O21]">
      <seq>gagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccatggaagcaggtggcttggaatcttttatcattgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaacgagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92972" stop="95469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93272" g_stop="93570" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95169" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="484" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E346993" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93272" e_stop="93570"/>
          <exon e_start="94985" e_stop="95169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACT</genome_strand>
        <mrna_strand>GAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCATGGAAGCAGGTGGCTTGGAATCTTTTATCATTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAACGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370929" ref_strand="+" ref_description="SGN-E370929 [TUS-27-J21]">
      <seq>ttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctgattttttcaaggaggaagattggcttctggacagcgcatattactcagagatgaaagatgcagggttttttgatgcagacggggagtaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93239" stop="97584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93539" g_stop="93570" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="0.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95176" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="224" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95177" i_stop="96590" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96591" g_stop="96750" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="384" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96850" g_stop="96952" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="487" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97047" g_stop="97128" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="569" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97129" i_stop="97201" i_length="73">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97202" g_stop="97284" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="652" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E370929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93539" e_stop="93570"/>
          <exon e_start="94985" e_stop="95176"/>
          <exon e_start="96591" e_stop="96750"/>
          <exon e_start="96850" e_stop="96952"/>
          <exon e_start="97047" e_stop="97128"/>
          <exon e_start="97202" e_stop="97284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTG</genome_strand>
        <mrna_strand>TTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271423" ref_strand="+" ref_description="SGN-E271423 [cLEM-5-D11]">
      <seq>ttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattangggtggctttggactttggttgtataatttgactggagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93239" stop="97417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93539" g_stop="93570" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="0.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95176" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="224" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95177" i_stop="96590" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96591" g_stop="96750" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="384" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96850" g_stop="96952" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="487" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94">
            <donor d_prob="0.088" d_score="0.98"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97047" g_stop="97117" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="558" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E271423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93539" e_stop="93570"/>
          <exon e_start="94985" e_stop="95176"/>
          <exon e_start="96591" e_stop="96750"/>
          <exon e_start="96850" e_stop="96952"/>
          <exon e_start="97047" e_stop="97117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTG</genome_strand>
        <mrna_strand>TTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTANGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGGAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276950" ref_strand="+" ref_description="SGN-E276950 [cLEN-22-O6]">
      <seq>ttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctgattttttcaaggaggaagattggcttctggacagcgcatattactcagagatgaaagatgcagggttttttgatgcagacggggagtaagcttgtaaaactgtagacaaataagcagtcccaacatgtaattgtaaatattgactggctggtattatgagaaacaaaactaatagttattcaagtgattgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94788" stop="97684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95088" g_stop="95176" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95177" i_stop="96590" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96591" g_stop="96750" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="249" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96850" g_stop="96952" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="352" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97047" g_stop="97128" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="434" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97129" i_stop="97201" i_length="73">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97202" g_stop="97384" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="617" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E276950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95088" e_stop="95176"/>
          <exon e_start="96591" e_stop="96750"/>
          <exon e_start="96850" e_stop="96952"/>
          <exon e_start="97047" e_stop="97128"/>
          <exon e_start="97202" e_stop="97384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATT</genome_strand>
        <mrna_strand>TTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370928" ref_strand="+" ref_description="SGN-E370928 [TUS-27-J21](-)">
      <seq>taaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctgattttttcaaggaggaagattggcttttggacagcgcatattactcaaaaatgaaaaatgcagggttttttgatgcagacggggagtaagcttgtaaaactgtagacaaataagcagtcccaacatgtaattgtaaatattgactggctggtattatgagaaacaaaactaatagttattcaagtgattgcattgtctagcttatttgctggttgagatcattgatccccttggcaaaagtataagaaagaacaactaaaatgttattgtaaagatatgtatttttgaatagaccatgctggctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96289" stop="97799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96501" g_stop="96506" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96507" i_stop="96590" i_length="84">
            <donor d_prob="0.742" d_score="0.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96591" g_stop="96750" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="165" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96850" g_stop="96952" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="268" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97047" g_stop="97128" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="350" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97129" i_stop="97201" i_length="73">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97202" g_stop="97496" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="645" r_length="295" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="670"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E370928" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96501" e_stop="96506"/>
          <exon e_start="96591" e_stop="96750"/>
          <exon e_start="96850" e_stop="96952"/>
          <exon e_start="97047" e_stop="97128"/>
          <exon e_start="97202" e_stop="97496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGAATAGACCATGCTGGCTAA</genome_strand>
        <mrna_strand>TAAAGG....................................................................................-CAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTTTGGACAGCGCATATTACTCAAAAATGAAAAATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCCCTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGAATAGACCATGCTGGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275577" ref_strand="-" ref_description="SGN-E275577 [cLEN-10-L3]">
      <seq>cttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctgattttttcaaggaggaagattggcttctggacagcgcatattactcagagatgaaagatgcagggttttttgatgcagacggggagtaagcttgtaaaactgtagacaaataagcagtcccaacatgtaattgtaaatattgactggctggtattatgagaaacaaaactaatagttattcaagtgattgcattgtctagcttatttgctggttgagatcattgatccacttggcaaaagtataagaaagaacaactaaaatgttattgtaaagatatgtatttttgaataaaaaaaaaaaaaaaaaaaaaactcgaaactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96387" stop="97783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96687" g_stop="96750" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96850" g_stop="96952" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="167" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97047" g_stop="97128" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="249" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97129" i_stop="97201" i_length="73">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97202" g_stop="97478" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="526" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="550"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-E275577" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275577" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96687" e_stop="96750"/>
          <exon e_start="96850" e_stop="96952"/>
          <exon e_start="97047" e_stop="97128"/>
          <exon e_start="97202" e_stop="97478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGA</genome_strand>
        <mrna_strand>CTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393783" ref_strand="+" ref_description="SGN-E393783 [TUS-14-E5](-)">
      <seq>attgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatacttccgcaagtgaactgtatgctctgaagagagtgtctttctctggtcgtttgcagacacacatggatttgccatccactctgaccaatttccaggggataaagctcattctagtatcggattcttacattgggtttgaacaagaacactctattgaaggattgacttaatctggaagaaactataccaactccagattgtaatgcaatgctcccaaaatcaggatttgactttgtatagcacaaaggctcactttttcacaatcagttatagaagttgtgttacggtctacatttgtaatgagatattgctttgtaattttcttgagtaattgatcggcatccttcatttttctttgtcatgtagatccaattgtatatatgcatcagggtactgttgaaagtcttatacacacaccctaatcaatatagagctttccattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100331" stop="97620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100031" g_stop="99970" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99969" i_stop="99025" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99024" g_stop="98875" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="212" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98874" i_stop="98810" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98809" g_stop="98678" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="344" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98677" i_stop="98270" i_length="408">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98269" g_stop="97914" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="700" r_length="356" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E393783" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100031" e_stop="99970"/>
          <exon e_start="99024" e_stop="98875"/>
          <exon e_start="98809" e_stop="98678"/>
          <exon e_start="98269" e_stop="97914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAGGTTGATATCTGATGATATTGTATATACATATACTTATTTGGTATTAAACTTAACCTGACATTTTTTTGTACACCAGTTAGCTGGTGTTTCCCCCTCTTCTAGATGAATCAGTGTCCCAGTAGCAGTCATTTTCTTTTTATGATGGTCTCTGAGAAATTAAACACCTACTCTCCCCCAGCACACACACACAAACAAACAAAATTAAATTAAAAATAGAAGTTAATAACAGATCAGCTTTTAGAAGATAGAGTATGACATATTTGTCTTCTTATCTTGGAGTCAAGATTCAGTCCTCCCAGCTACCCACCCACTCCAGGAAGGGGAAAAAAACATGTTTTCATTCTGTGCATGTAAAAGATGTTACACCTTCTATGTTGGGACTGAAAAGTTGAGATGTTTCTATTTCAGGGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAATGTCCA</genome_strand>
        <mrna_strand>ATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353001" ref_strand="+" ref_description="SGN-E353001 [cTOS-14-G6]">
      <seq>gcaaatggtcatgcagggcttgtggtttgatagagactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatacttccgcaagtgaactgtatgctctgaagagagtgtctttctctggtcgtttgcagacacacatggatttgccatccactctgaccaatttccaggggataaagctcattctagtatcggattcttacattgggttttgaacaagaacactctattgaaggattgacttaatctggaagaaactataccaactccagattgtaatgcaatgctcccaaaatcaggatttgactttgtatagcacaaaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102618" stop="97814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102318" g_stop="102303" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102302" i_stop="100141" i_length="2162">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100140" g_stop="99970" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="187" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99969" i_stop="99025" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99024" g_stop="98875" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="337" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98874" i_stop="98810" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98809" g_stop="98678" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="469" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98677" i_stop="98270" i_length="408">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98269" g_stop="98114" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="626" r_length="157" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E353001" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102318" e_stop="102303"/>
          <exon e_start="100140" e_stop="99970"/>
          <exon e_start="99024" e_stop="98875"/>
          <exon e_start="98809" e_stop="98678"/>
          <exon e_start="98269" e_stop="98114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAGGTTGATATCTGATGATATTGTATATACATATACTTATTTGGTATTAAACTTAACCTGACATTTTTTTGTACACCAGTTAGCTGGTGTTTCCCCCTCTTCTAGATGAATCAGTGTCCCAGTAGCAGTCATTTTCTTTTTATGATGGTCTCTGAGAAATTAAACACCTACTCTCCCCCAGCACACACACACAAACAAACAAAATTAAATTAAAAATAGAAGTTAATAACAGATCAGCTTTTAGAAGATAGAGTATGACATATTTGTCTTCTTATCTTGGAGTCAAGATTCAGTCCTCCCAGCTACCCACCCACTCCAGGAAGGGGAAAAAAACATGTTTTCATTCTGTGCATGTAAAAGATGTTACACCTTCTATGTTGGGACTGAAAAGTTGAGATGTTTCTATTTCAGGGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGG-TTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTC</genome_strand>
        <mrna_strand>GCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354914" ref_strand="+" ref_description="SGN-E354914 [cTOS-19-G19]">
      <seq>gcaaatggtcatgcagggcttgtggtttgatagagactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatacttccgcaagtgaactgtatgctctgaagagagtgtctttctctggtcgtttgcagacacacatggatttgccatccactctgaccaatttccaggggataaagctcattctagtatcggattcttacattgggtttgaacaagaacactctattgaaggattgacttaatctggaagaaactataccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102618" stop="97873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102318" g_stop="102303" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102302" i_stop="100141" i_length="2162">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100140" g_stop="99970" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="187" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99969" i_stop="99025" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99024" g_stop="98875" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="337" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98874" i_stop="98810" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98809" g_stop="98678" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="469" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98677" i_stop="98270" i_length="408">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98269" g_stop="98173" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="566" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E354914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102318" e_stop="102303"/>
          <exon e_start="100140" e_stop="99970"/>
          <exon e_start="99024" e_stop="98875"/>
          <exon e_start="98809" e_stop="98678"/>
          <exon e_start="98269" e_stop="98173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAGGTTGATATCTGATGATATTGTATATACATATACTTATTTGGTATTAAACTTAACCTGACATTTTTTTGTACACCAGTTAGCTGGTGTTTCCCCCTCTTCTAGATGAATCAGTGTCCCAGTAGCAGTCATTTTCTTTTTATGATGGTCTCTGAGAAATTAAACACCTACTCTCCCCCAGCACACACACACAAACAAACAAAATTAAATTAAAAATAGAAGTTAATAACAGATCAGCTTTTAGAAGATAGAGTATGACATATTTGTCTTCTTATCTTGGAGTCAAGATTCAGTCCTCCCAGCTACCCACCCACTCCAGGAAGGGGAAAAAAACATGTTTTCATTCTGTGCATGTAAAAGATGTTACACCTTCTATGTTGGGACTGAAAAGTTGAGATGTTTCTATTTCAGGGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACT</genome_strand>
        <mrna_strand>GCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240582" ref_strand="+" ref_description="SGN-E240582 [cLED-21-M8]">
      <seq>ccagcctctttttatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatactttcgcaagtgaactgtatgctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100416" stop="98447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100120" g_stop="99970" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99969" i_stop="99025" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99024" g_stop="98875" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="301" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98874" i_stop="98810" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98809" g_stop="98747" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="364" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E240582" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100120" e_stop="99970"/>
          <exon e_start="99024" e_stop="98875"/>
          <exon e_start="98809" e_stop="98747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTG</genome_strand>
        <mrna_strand>CCAGCCTCTTTTTATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTTCGCAAGTGAACTGTATGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270646" ref_strand="+" ref_description="SGN-E270646 [cLEM-6-K21]">
      <seq>tgtcgaccttaatcgcctggatgatcctggtgtgaaagcgaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctggatcaaagtatacgtgttatccaggctatgatagatatttgtgccaacagtggatggctctcaagtaccattacctgtatgcatctgttgcaaatggtcatgcagggcttgtggtttgatagagactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103091" stop="98572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102791" g_stop="102737" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102736" i_stop="102471" i_length="266">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102470" g_stop="102303" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="223" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102302" i_stop="100141" i_length="2162">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100140" g_stop="99970" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="394" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99969" i_stop="99025" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99024" g_stop="98875" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="544" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98874" i_stop="98810" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98809" g_stop="98800" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="554" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E270646" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102791" e_stop="102737"/>
          <exon e_start="102470" e_stop="102303"/>
          <exon e_start="100140" e_stop="99970"/>
          <exon e_start="99024" e_stop="98875"/>
          <exon e_start="98809" e_stop="98800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATG</genome_strand>
        <mrna_strand>TGTCGACCTTAATCGCCTGGATGATCCTGGTGTGAAAGCGAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312352" ref_strand="+" ref_description="SGN-E312352 [cTOA-5-D15]">
      <seq>tgaagtacaccactgtatcaatgtttggctcaaaaataggatctgatacatcacttgaggttttcctacaaatactgtctggtgcttctgaatatgatgagctcccggtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtcgaccacaatcgcctggatgatcctcatgtgaaagcaaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctggatcaaagtatacgtgttatccaggctatgatagatatttgtgccaacagtggatggctctcaagtaccattacctgtatgcatctgttgcaaatggtcatgcagggcttgtggtttgataaacactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103705" stop="99762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103405" g_stop="103347" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103346" i_stop="103245" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103244" g_stop="103182" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="122" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103181" i_stop="102833" i_length="349">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102832" g_stop="102737" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102736" i_stop="102471" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102470" g_stop="102303" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="386" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102302" i_stop="100141" i_length="2162">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100140" g_stop="100062" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="465" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E312352" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103405" e_stop="103347"/>
          <exon e_start="103244" e_stop="103182"/>
          <exon e_start="102832" e_stop="102737"/>
          <exon e_start="102470" e_stop="102303"/>
          <exon e_start="100140" e_stop="100062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAGGTTTGTAGAACACCTAACATGGATGTCTAATCCTTATTTCTCTATTTCAATGTTTTTAAATTATATTTCTTGGCATTACTTCCTATTTATCTTTCACCCCAGGTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAGGTAATTTTTTTAGCTAGGCAATATATATATATATATATATATATATATATATATTTGAAGACAGTTGTTGCTGAACAATGGTTTGTTGGTTTTCAACTCTCTTAATTTCTTTACTTTTTTCCCTTAGTTGTATATTACTTGCTAGTTCTAACTAGTAAACCAATAACATTGATGTCCTGGCATTACACCAATTGTTGCAGACACTTCTGAATTATTGTCTGCAAATCTAAATTAGTATCGATAATTCCGCTAAGAAATTGCCTGGATTTTGAAACTATCAAACTATGCATCAACTACTTCTTTATTTGTATGTTGTACACATCATCTGCTTATTGATCACCTATTCCAGGAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAA</genome_strand>
        <mrna_strand>TGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG......................................................................................................GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG.............................................................................................................................................................................................................................................................................................................................................................GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAAACACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202556" ref_strand="+" ref_description="SGN-E202556 [cLEC-6-H12]">
      <seq>tgaaagtagcctgagagagcaacttcatgaccacatcaacgctgagattgttactggaacaatctctcataaagaggacgctatgcattatctcacttggacctacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcagaacctgggattctaaattcttatttgtctagcttggtgcaaagcacatttgaggatcttgaagactctggatgcatcaaggttaccgaggacagtgttgaaccactgatgttgggctcaatagcatctcagtattatctgaagtacaccactgtatcaatgtttggctcaaaaataggatctgatacatcacttgaggttttcctacaaatactgtctggtgcttctgaatatgatgagctcccggtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtcgaccacaatcgcctggatgatcctcatgtgaaagcaaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105634" stop="102121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105334" g_stop="105214" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105213" i_stop="103659" i_length="1555">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103658" g_stop="103591" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="189" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103590" i_stop="103513" i_length="78">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103512" g_stop="103347" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="355" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103346" i_stop="103245" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103244" g_stop="103182" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103181" i_stop="102833" i_length="349">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102832" g_stop="102737" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="514" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102736" i_stop="102471" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102470" g_stop="102421" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="564" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E202556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105334" e_stop="105214"/>
          <exon e_start="103658" e_stop="103591"/>
          <exon e_start="103512" e_stop="103347"/>
          <exon e_start="103244" e_stop="103182"/>
          <exon e_start="102832" e_stop="102737"/>
          <exon e_start="102470" e_stop="102421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTGGTATGGTTTTGTGATCCTATGGCAGAGAATTTATTTTGTTGCTCCAAATTTATAGTCTTGCATTACCGATCAAGAAAAAATTTCAATCTTGCAGCAATGGCAATGCTAAGTTAGGAACCACCATCATTATATTAAGAGTGCTTGATGCATGTTTTTCTTTCAGCAAGTAATCATCAGTAATAAGTAGGTTACTTGGTTGCTGATTGATATGGGTTACTCATTTAAGGTAAATATATTAATATGAAATTTCTAAAGAAGATGTAGGTAACTAAGTTGTGTCTCCTACAGTGAAGAACATATAAATGGAAATCCAGTAAAGGAAATGAGTCCTTTATAATAAGGTAACACGGGAGATTTATGAGTTGATTAATTTAGCTTGCAAAAAGAAAAGTTAAGGGAGGCCACAATAGTGCAACCTTGTTCTGATTTTATCTTGCTTATGTTATCTTTTCCGGAAGTCTCAAATTTTATTTTCTAAGTAAGCATTACCAACATGTGACAACTGAAACTGGAAAAAGAAAGTGGTAGGTAAAGGGCTAATTTCAGTTGTACCATAGTGATCTTTATGGTAACATGATTTGTTTCAGATTGTGGTGGACTCCAAAATCTATATTATTGTAATCAACTAGCAGACAAAGGGAACACACTTCAGGCAGCAGCTAAAGTTGCACAAGAAAATATGTGTCTGTTTGATGTGCTTTTACAAGCTTACTGCTGCTAGATACCATCAAAGCATTTTCTATGAAAAAAGTTGGGAGAAAGTGAGGTCTACCCCACGTACCAAAGTCTTGTCAAAGTGCAAGTTGAAATAGCTCGTCAGCTTTAACCAGACCCTAAGGGATAGGAATAGCTAATCCACAAATTATGTGTAGTAATTATCTAACTTGATTGACCCTTGTTTATTTATGTAACATAAGATTATTTTAGATTCAAAATGAGAGAGCTGATTTAAAGCAATAACAATCAGCATTGAGTGGTAAAACAATGGTTTGCTTATGCTATTCATTGTATCCTTCCGCCCCAACAAATGTAGTGCCAACTGTAGGTGTTGATGTTGCATGTGTATTATTTTCCACCTTGTGGGAAAGAACAAAAGAAAAGTTACATTTCTGTGTACTGCCTGTATAGATGCCTTTTATATAGTGAATAATTGATCTATGGGTTAGTCACAATAGGGAATAATTGGTTATTCCGTGGTTCAAATGGAATTCTTGCCCTAGTGGCAAGGTCCCTCCACCTCCAGTCACTAATATGTGGTTCGGGACACTCAGAGGGAAAAGTAGGCGAGCACTGTTTCTCCTGGGAAGGGGAAGCATTGAGGTAAAGAAGGATGTTACCAATTTAAAAAAAAAAAAAAAGATAAAGGAGGAGATGATATGTCACCTAAATGAAAAGGATGAGAAGAAAGTCAATTTTCACCTCAATCTACTAATGTATTTCTGTGGATTGACAATGTCATCAAAGAAAATCTTATATGTTTGAAGAATTACCAAAAATAGTGTACTGTTCTTTCCCTGCTAGTTATTATGTTTATTAACCATAGAAGTTTTTGCAGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAGGTAAAATGAAAGCACTACATAGTCTTGAAATAGCTTTTCTTGTATATTTCTGTGTGTGCTCACATTATTTATGAACAGCTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAGGTTTGTAGAACACCTAACATGGATGTCTAATCCTTATTTCTCTATTTCAATGTTTTTAAATTATATTTCTTGGCATTACTTCCTATTTATCTTTCACCCCAGGTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAGGTAATTTTTTTAGCTAGGCAATATATATATATATATATATATATATATATATATTTGAAGACAGTTGTTGCTGAACAATGGTTTGTTGGTTTTCAACTCTCTTAATTTCTTTACTTTTTTCCCTTAGTTGTATATTACTTGCTAGTTCTAACTAGTAAACCAATAACATTGATGTCCTGGCATTACACCAATTGTTGCAGACACTTCTGAATTATTGTCTGCAAATCTAAATTAGTATCGATAATTCCGCTAAGAAATTGCCTGGATTTTGAAACTATCAAACTATGCATCAACTACTTCTTTATTTGTATGTTGTACACATCATCTGCTTATTGATCACCTATTCCAGGAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTT</genome_strand>
        <mrna_strand>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG..............................................................................CTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG......................................................................................................GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG.............................................................................................................................................................................................................................................................................................................................................................GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394239" ref_strand="+" ref_description="SGN-E394239 [TUS-14-E5]">
      <seq>tcgtaagtagcctgagagagcaacttcatgaccacatcaacgctgagattgttactggaacaatctctcataaagaggacgctatgcattatctcacttggacctacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcaaatcctgcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105635" stop="103311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105335" g_stop="105214" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105213" i_stop="103659" i_length="1555">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103658" g_stop="103611" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="170" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-E394239" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105335" e_stop="105214"/>
          <exon e_start="103658" e_stop="103611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTGGTATGGTTTTGTGATCCTATGGCAGAGAATTTATTTTGTTGCTCCAAATTTATAGTCTTGCATTACCGATCAAGAAAAAATTTCAATCTTGCAGCAATGGCAATGCTAAGTTAGGAACCACCATCATTATATTAAGAGTGCTTGATGCATGTTTTTCTTTCAGCAAGTAATCATCAGTAATAAGTAGGTTACTTGGTTGCTGATTGATATGGGTTACTCATTTAAGGTAAATATATTAATATGAAATTTCTAAAGAAGATGTAGGTAACTAAGTTGTGTCTCCTACAGTGAAGAACATATAAATGGAAATCCAGTAAAGGAAATGAGTCCTTTATAATAAGGTAACACGGGAGATTTATGAGTTGATTAATTTAGCTTGCAAAAAGAAAAGTTAAGGGAGGCCACAATAGTGCAACCTTGTTCTGATTTTATCTTGCTTATGTTATCTTTTCCGGAAGTCTCAAATTTTATTTTCTAAGTAAGCATTACCAACATGTGACAACTGAAACTGGAAAAAGAAAGTGGTAGGTAAAGGGCTAATTTCAGTTGTACCATAGTGATCTTTATGGTAACATGATTTGTTTCAGATTGTGGTGGACTCCAAAATCTATATTATTGTAATCAACTAGCAGACAAAGGGAACACACTTCAGGCAGCAGCTAAAGTTGCACAAGAAAATATGTGTCTGTTTGATGTGCTTTTACAAGCTTACTGCTGCTAGATACCATCAAAGCATTTTCTATGAAAAAAGTTGGGAGAAAGTGAGGTCTACCCCACGTACCAAAGTCTTGTCAAAGTGCAAGTTGAAATAGCTCGTCAGCTTTAACCAGACCCTAAGGGATAGGAATAGCTAATCCACAAATTATGTGTAGTAATTATCTAACTTGATTGACCCTTGTTTATTTATGTAACATAAGATTATTTTAGATTCAAAATGAGAGAGCTGATTTAAAGCAATAACAATCAGCATTGAGTGGTAAAACAATGGTTTGCTTATGCTATTCATTGTATCCTTCCGCCCCAACAAATGTAGTGCCAACTGTAGGTGTTGATGTTGCATGTGTATTATTTTCCACCTTGTGGGAAAGAACAAAAGAAAAGTTACATTTCTGTGTACTGCCTGTATAGATGCCTTTTATATAGTGAATAATTGATCTATGGGTTAGTCACAATAGGGAATAATTGGTTATTCCGTGGTTCAAATGGAATTCTTGCCCTAGTGGCAAGGTCCCTCCACCTCCAGTCACTAATATGTGGTTCGGGACACTCAGAGGGAAAAGTAGGCGAGCACTGTTTCTCCTGGGAAGGGGAAGCATTGAGGTAAAGAAGGATGTTACCAATTTAAAAAAAAAAAAAAAGATAAAGGAGGAGATGATATGTCACCTAAATGAAAAGGATGAGAAGAAAGTCAATTTTCACCTCAATCTACTAATGTATTTCTGTGGATTGACAATGTCATCAAAGAAAATCTTATATGTTTGAAGAATTACCAAAAATAGTGTACTGTTCTTTCCCTGCTAGTTATTATGTTTATTAACCATAGAAGTTTTTGCAGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATT</genome_strand>
        <mrna_strand>TCGTAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAAATCCTGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>118</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="16980" PGL_stop="24640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16980" e_stop="17440"/>
            <exon e_start="18159" e_stop="18416"/>
            <exon e_start="18511" e_stop="18547"/>
            <exon e_start="18762" e_stop="18945"/>
            <exon e_start="19363" e_stop="19511"/>
            <exon e_start="19609" e_stop="19842"/>
            <exon e_start="20364" e_stop="20553"/>
            <exon e_start="20642" e_stop="20767"/>
            <exon e_start="20893" e_stop="20992"/>
            <exon e_start="22060" e_stop="22589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.986" e_score="0.995"/>
          <exon-intron don_prob="0.993" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="16980" e_stop="17440" e_length="461"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.986">
            <gDNA_intron_boundary i_start="17441" i_stop="18158" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18159" e_stop="18416" e_length="258"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.937">
            <gDNA_intron_boundary i_start="18417" i_stop="18510" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18511" e_stop="18547" e_length="37"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.687">
            <gDNA_intron_boundary i_start="18548" i_stop="18761" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18762" e_stop="18945" e_length="184"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.932">
            <gDNA_intron_boundary i_start="18946" i_stop="19362" i_length="417"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19363" e_stop="19511" e_length="149"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19512" i_stop="19608" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19609" e_stop="19842" e_length="234"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.870">
            <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20364" e_stop="20553" e_length="190"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20642" e_stop="20767" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20893" e_stop="20992" e_length="100"/>
          </exon>
          <intron i_serial="9" don_prob="0.906" acc_prob="0.991">
            <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22060" e_stop="22589" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16980" stop="17420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17108" stop="17440"/>
              <exon start="18159" stop="18414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17108" stop="17440"/>
              <exon start="18159" stop="18190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17237" stop="17440"/>
              <exon start="18159" stop="18416"/>
              <exon start="18511" stop="18547"/>
              <exon start="18762" stop="18945"/>
              <exon start="19363" stop="19511"/>
              <exon start="19609" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19710" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19791" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19795" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19795" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19795" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19795" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTTCCTTTTCGGCTGTAAGCCAATATTAACGACAAATTTTAAGCTTAAGACACCTCACTACTGCAAATCCAACAAATAATTTGACTCTGCTCAATTGCTCATACATTTGACACCTCATTGTATTACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCG : CTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATCTG : GATTTATCTCACCCCTTTCTGGCAAATTCTATTCAAG : CTTTCAACCATCTGAGATTACGACTTGGAGGTTCTTTGCAAAACCGAATAATCTATGATGTGGGCAATTTGGAGTCGCCTTGCCATCCGTTTACCAAGCAAGGGGATGAGTTGTTTGGATTTTCAAATGGATGTTTACGTATGGATAGATGGGATGAGCTAAATAGCTTTTTCAATAAGACAGG : AGCACTTGTGACCTTTGGTCTGAATGCATTGCGAGGGAGGCAGAGGACCAGTAAGCGTGTCTGGGAAGGGAATTGGGATTCCAGCAACGCCCATGATTTCATAGATTACACTGTTTCCAAGGGCTACCAAATACACTCATGGGAATTTG : GAAATGAGTTGAGTGGTAAGGGGATTGGTGCAAAGGTTGATGCTGAACAATATGGAGAAGATGTTATACATCTTAACAATCTCATAGACCAATTGTATAAGCATTTCCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTATGATAAAGAGTGGTTTGAGACGTTCCTTGAGATGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG : GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG : GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG : TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGA : GCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCCAAGTTTGTCTCCAGTCCTTGTAAAGCTGAAGTCTCCAATATCAATTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCTACTTAAGCTCTCCTGTTTGTACATAGAATTAGGAAATACTTTTGTCTGATAGTTATCATCTGGCACTCTTATCTATTCACAACTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCCAAATTTTATGCAGTTATGTATTATATGGCTAGGTAAATCCATTTA</gDNA_template>
            <first_frame> L  I  S  F  S  A  V  S  Q  Y  *  R  Q  I  L  S  L  R  H  L  T  T  A  N  P  T  N  N  L  T  L  L  N  C  S  Y  I  *  H  L  I  V  L  Q  S  L  S  I  F  P  L  S  N  F  D  N  G  N  S  F  V  P  K  I  P  *  F  L  N  E  *  T  L  I  V  A  I  *  Y  T  *  T  N  L  K  L  T  L  F  I  S  H  S  F  L  V  L  F  P  H  H  K  V  L  A  D  K  A  C  P  F  L  A  Q  R  L  P  A  H  Y  Q  C  C  F  F  F  L  F  G  T  C  A  L  V  I  S  N  S  C  G  V  *  G  Y  F  S  S  G  F  S  S  I  V  R :   L  *  I  C  S  K  R  G  E  A  E  *  F  K  S  Q  W  A  S  H  P  Y  C  *  S  F  W  H  C  V  L  H  F  W  H  K  *  L  K  K  Q  N  F  *  L  M  E  L  *  K  L  L  R  Q  I  I  I  M  F  A  L  L  L  T  G  G  L  K  K  S  V  T  T  T  I  A  L  G  A  R  H  L  *  *  I  W :   I  Y  L  T  P  F  W  Q  I  L  F  K  :  L  S  T  I  *  D  Y  D  L  E  V  L  C  K  T  E  *  S  M  M  W  A  I  W  S  R  L  A  I  R  L  P  S  K  G  M  S  C  L  D  F  Q  M  D  V  Y  V  W  I  D  G  M  S  *  I  A  F  S  I  R  Q   : E  H  L  *  P  L  V  *  M  H  C  E  G  G  R  G  P  V  S  V  S  G  K  G  I  G  I  P  A  T  P  M  I  S  *  I  T  L  F  P  R  A  T  K  Y  T  H  G  N  L  :  E  M  S  *  V  V  R  G  L  V  Q  R  L  M  L  N  N  M  E  K  M  L  Y  I  L  T  I  S  *  T  N  C  I  S  I  S  N  P  D  H  F  S  *  H  Q  E  D  S  M  I  K  S  G  L  R  R  S  L  R  C  Q  G  Q  A  L  S  M  P  *  L  I  I  Y  I  I  L  V  Q  :  D  L  T  S  I  S  *  T  K  F  *  T  L  C  T  *  I  K  L  L  T  H  S  V  I  L  V  K  P  L  K  *  M  V  L  G  L  Q  L  G  L  E  N  L  V  G  P  S  I  T  E  V  L  M  C  L  T  P  L  *  T  V  F   : G  T  W  I  S  L  G  W  Q  P  H  I  T  L  K  Y  I  A  G  R  L  L  L  V  E  T  M  G  S  L  T  Q  V  H  L  S  Q  I  L  I  I  I   : V  H  F  F  G  I  G  *  W  E  K  E  F  L  L  L  A  T  M  H  H  H  I  C  A  R  M  P  T  V  Q  D  I  E :   Q  V  *  H  Y  F  *  S  I  *  A  T  K  L  I  M  E  S  T  S  N  L  V  *  A  S  P  R  M  S  K  R  N  Q  I  T  R  V  L  S  C  N  V  L  R  K  L  F  H  G  L  E  E  N  H  Q  M  L  H  Y  H  E  K  S  T  I  *  L  H  *  M  G  T  F  K  A  E  P  C  S  *  M  E  N  H  Y  N  S  Q  K  M  G  T  S  Q  V  C  L  Q  S  L  *  S  *  S  L  Q  Y  Q  F  P  P  C  P  S  N  S  *  Y  S  P  T  *  A  L  L  F  V  H  R  I  R  K  Y  F  C  L  I  V  I  I  W  H  S  Y  L  F  T  T  *  *  L  Y  N  C  Y  N  K  L  S  C  Q  I  L  C  S  Y  V  L  Y  G  *  V  N  P  F  </first_frame>
            <second_frame>  *  F  P  F  R  L  *  A  N  I  N  D  K  F  *  A  *  D  T  S  L  L  Q  I  Q  Q  I  I  *  L  C  S  I  A  H  T  F  D  T  S  L  Y  Y  K  V  C  L  Y  F  L  F  R  T  S  T  M  A  T  V  L  Y  Q  K  F  L  N  S  *  M  N  E  R  *  L  L  L  Y  N  T  L  R  Q  I  *  N  L  P  F  S  F  H  T  L  F  L  F  F  S  P  T  T  R  Y  W  L  I  K  L  A  P  F  W  H  R  G  C  L  H  I  I  S  V  A  F  S  F  F  L  E  L  V  L  W  *  S  Q  I  L  V  V  F  K  V  I  S  H  L  G  S  A  Q  L  F   : A  Y  E  S  V  Q  R  G  V  K  L  S  S  L  K  A  N  G  L  P  T  L  I  V  N  L  F  G  T  V  S  C  I  S  G  T  N  S  *  R  N  R  I  S  D  *  W  N  C  K  N  C  *  D  R  *  *  L  C  L  R  Y  S  *  L  V  A  *  R  K  V  *  P  Q  R  L  P  L  G  L  D  I  S  D  K  S   : G  F  I  S  P  L  S  G  K  F  Y  S  S :   F  Q  P  S  E  I  T  T  W  R  F  F  A  K  P  N  N  L  *  C  G  Q  F  G  V  A  L  P  S  V  Y  Q  A  R  G  *  V  V  W  I  F  K  W  M  F  T  Y  G  *  M  G  *  A  K  *  L  F  Q  *  D  R  :  S  T  C  D  L  W  S  E  C  I  A  R  E  A  E  D  Q  *  A  C  L  G  R  E  L  G  F  Q  Q  R  P  *  F  H  R  L  H  C  F  Q  G  L  P  N  T  L  M  G  I  W :   K  *  V  E  W  *  G  D  W  C  K  G  *  C  *  T  I  W  R  R  C  Y  T  S  *  Q  S  H  R  P  I  V  *  A  F  P  T  P  T  T  S  L  S  T  R  R  I  L  *  *  R  V  V  *  D  V  P  *  D  V  R  A  R  H  C  R  C  L  D  S  S  Y  I  *  S  W  C  R :   I  *  P  Q  S  R  K  Q  N  F  K  P  S  A  L  E  *  N  C  *  H  I  Q  *  S  *  S  N  H  *  N  E  W  S  L  V  F  S  L  G  W  R  I  W  W  G  L  Q  *  R  R  S  *  C  V  *  H  L  C  E  Q  F  L  :  V  L  G  S  A  W  D  G  S  H  I  S  H  *  S  I  L  Q  A  D  F  Y  W  W  K  L  W  A  P  *  H  K  Y  I  C  P  K  S  *  L  L  *  :  C  T  S  L  A  S  A  D  G  K  R  S  S  C  C  *  Q  Q  C  I  I  I  S  A  L  V  C  P  L  Y  K  T  *   : S  R  C  N  I  T  F  D  Q  S  K  Q  P  N  S  L  W  S  Q  H  R  I  *  C  K  H  H  L  A  C  Q  R  E  I  K  S  Q  E  F  F  R  A  T  S  *  E  N  Y  F  M  G  W  K  K  I  I  R  C  Y  I  I  T  R  R  V  P  S  D  S  T  R  W  E  P  S  K  Q  N  H  A  L  E  W  K  T  I  T  T  R  R  K  W  E  H  P  K  F  V  S  S  P  C  K  A  E  V  S  N  I  N  F  P  L  V  H  Q  I  H  S  I  P  L  L  K  L  S  C  L  Y  I  E  L  G  N  T  F  V  *  *  L  S  S  G  T  L  I  Y  S  Q  L  S  N  C  I  I  A  T  I  N  *  A  A  K  F  Y  A  V  M  Y  Y  M  A  R  *  I  H  L </second_frame>
            <third_frame>   D  F  L  F  G  C  K  P  I  L  T  T  N  F  K  L  K  T  P  H  Y  C  K  S  N  K  *  F  D  S  A  Q  L  L  I  H  L  T  P  H  C  I  T  K  F  V  Y  I  S  S  F  E  L  R  Q  W  Q  Q  F  C  T  K  N  S  L  I  L  E  *  M  N  A  N  C  C  Y  I  I  H  L  D  K  S  E  T  Y  P  F  H  F  T  L  F  S  C  S  F  P  P  P  Q  G  T  G  *  *  S  L  P  L  F  G  T  E  A  A  C  T  L  S  V  L  L  F  L  S  F  W  N  L  C  S  G  D  L  K  F  L  W  C  L  R  L  F  L  I  W  V  Q  L  N  C  S  :  L  M  N  L  F  K  E  G  *  S  *  V  V  *  K  P  M  G  F  P  P  L  L  L  I  F  L  A  L  C  P  A  F  L  A  Q  I  V  E  E  T  E  F  L  I  D  G  T  V  K  I  A  E  T  D  N  N  Y  V  C  A  T  L  D  W  W  P  K  E  K  C  N  H  N  D  C  P  W  G  S  T  S  L  I  N  L  :  D  L  S  H  P  F  L  A  N  S  I  Q   : A  F  N  H  L  R  L  R  L  G  G  S  L  Q  N  R  I  I  Y  D  V  G  N  L  E  S  P  C  H  P  F  T  K  Q  G  D  E  L  F  G  F  S  N  G  C  L  R  M  D  R  W  D  E  L  N  S  F  F  N  K  T  G :   A  L  V  T  F  G  L  N  A  L  R  G  R  Q  R  T  S  K  R  V  W  E  G  N  W  D  S  S  N  A  H  D  F  I  D  Y  T  V  S  K  G  Y  Q  I  H  S  W  E  F   : G  N  E  L  S  G  K  G  I  G  A  K  V  D  A  E  Q  Y  G  E  D  V  I  H  L  N  N  L  I  D  Q  L  Y  K  H  F  Q  P  R  P  L  L  L  A  P  G  G  F  Y  D  K  E  W  F  E  T  F  L  E  M  S  G  P  G  T  V  D  A  L  T  H  H  I  Y  N  L  G  A   : G  S  D  L  N  L  V  N  K  I  L  N  P  L  H  L  N  K  I  A  D  T  F  S  N  L  S  Q  T  I  E  M  N  G  P  W  S  S  A  W  V  G  E  S  G  G  A  F  N  N  G  G  P  N  V  S  N  T  F  V  N  S  F  W :   Y  L  D  Q  L  G  M  A  A  T  Y  H  T  K  V  Y  C  R  Q  T  F  I  G  G  N  Y  G  L  L  D  T  S  T  F  V  P  N  P  D  Y  Y  S :   A  L  L  W  H  R  L  M  G  K  G  V  L  A  V  S  N  N  A  S  S  Y  L  R  S  Y  A  H  C  T  R  H  R  :  A  G  V  T  L  L  L  I  N  L  S  N  Q  T  H  Y  G  V  N  I  E  S  S  V  S  I  T  S  H  V  K  E  K  S  N  H  K  S  S  F  V  Q  R  L  K  K  T  I  S  W  V  G  R  K  S  S  D  V  T  L  S  R  E  E  Y  H  L  T  P  L  D  G  N  L  Q  S  R  T  M  L  L  N  G  K  P  L  Q  L  A  E  N  G  N  I  P  S  L  S  P  V  L  V  K  L  K  S  P  I  S  I  S  P  L  S  I  K  F  I  V  F  P  Y  L  S  S  P  V  C  T  *  N  *  E  I  L  L  S  D  S  Y  H  L  A  L  L  S  I  H  N  L  V  I  V  *  L  L  Q  *  T  E  L  P  N  F  M  Q  L  C  I  I  W  L  G  K  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18201" stop="18416"/>
                    <exon start="18511" stop="18547"/>
                    <exon start="18762" stop="18945"/>
                    <exon start="19363" stop="19511"/>
                    <exon start="19609" stop="19842"/>
                    <exon start="20364" stop="20553"/>
                    <exon start="20642" stop="20767"/>
                    <exon start="20893" stop="20992"/>
                    <exon start="22060" stop="22449"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1623</number_coding_nucleotides>
                  <number_encoded_amino_acids>541</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPMGFPPLLLIFLALCPAFLAQIVEETEFLIDGTVKIAETDNNYVCATLDWWPKEKCNHNDCPWGSTSLINLDLSHPFLANSIQAFNHLRLRLGGSLQNRIIYDVGNLESPCHPFTKQGDELFGFSNGCLRMDRWDELNSFFNKTGALVTFGLNALRGRQRTSKRVWEGNWDSSNAHDFIDYTVSKGYQIHSWEFGNELSGKGIGAKVDAEQYGEDVIHLNNLIDQLYKHFQPRPLLLAPGGFYDKEWFETFLEMSGPGTVDALTHHIYNLGAGSDLNLVNKILNPLHLNKIADTFSNLSQTIEMNGPWSSAWVGESGGAFNNGGPNVSNTFVNSFWYLDQLGMAATYHTKVYCRQTFIGGNYGLLDTSTFVPNPDYYSALLWHRLMGKGVLAVSNNASSYLRSYAHCTRHRAGVTLLLINLSNQTHYGVNIESSVSITSHVKEKSNHKSSFVQRLKKTISWVGRKSSDVTLSREEYHLTPLDGNLQSRTMLLNGKPLQLAENGNIPSLSPVLVKLKSPISISPLSIKFIVFPYLSSPVCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19710" e_stop="19842"/>
            <exon e_start="20364" e_stop="20553"/>
            <exon e_start="20642" e_stop="20767"/>
            <exon e_start="20893" e_stop="20992"/>
            <exon e_start="22060" e_stop="22563"/>
            <exon e_start="24609" e_stop="24640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.972"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19710" e_stop="19842" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.870">
            <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20364" e_stop="20553" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20642" e_stop="20767" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20893" e_stop="20992" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.906" acc_prob="0.991">
            <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="22060" e_stop="22563" e_length="504"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22564" i_stop="24608" i_length="2045"/>
          </intron>
          <exon e_serial="6" e_score="0.750">
            <gDNA_exon_boundary e_start="24609" e_stop="24640" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19710" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19791" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19795" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19795" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19795" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19795" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20942" stop="20992"/>
              <exon start="22060" stop="22563"/>
              <exon start="24609" stop="24640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTCCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTATGATAAAGAGTGGTTTGAGACGTTCCTTGAGATGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG : GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG : GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG : TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGA : GCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCCAAGTTTGTCTCCAGTCCTTGTAAAGCTGAAGTCTCCAATATCAATTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCTACTTAAGCTCTCCTGTTTGTACATAGAATTAGGAAATACTTTTGTCTGATAGTTATCATCTGGCACTCTTATCTATTCACAACTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCCAAATTTTATGCAGTTATGT : TAAATGAAAAAGAAGAACAAAAATAAAATGAA</gDNA_template>
            <first_frame> H  F  Q  P  R  P  L  L  L  A  P  G  G  F  Y  D  K  E  W  F  E  T  F  L  E  M  S  G  P  G  T  V  D  A  L  T  H  H  I  Y  N  L  G  A   : G  S  D  L  N  L  V  N  K  I  L  N  P  L  H  L  N  K  I  A  D  T  F  S  N  L  S  Q  T  I  E  M  N  G  P  W  S  S  A  W  V  G  E  S  G  G  A  F  N  N  G  G  P  N  V  S  N  T  F  V  N  S  F  W :   Y  L  D  Q  L  G  M  A  A  T  Y  H  T  K  V  Y  C  R  Q  T  F  I  G  G  N  Y  G  L  L  D  T  S  T  F  V  P  N  P  D  Y  Y  S :   A  L  L  W  H  R  L  M  G  K  G  V  L  A  V  S  N  N  A  S  S  Y  L  R  S  Y  A  H  C  T  R  H  R  :  A  G  V  T  L  L  L  I  N  L  S  N  Q  T  H  Y  G  V  N  I  E  S  S  V  S  I  T  S  H  V  K  E  K  S  N  H  K  S  S  F  V  Q  R  L  K  K  T  I  S  W  V  G  R  K  S  S  D  V  T  L  S  R  E  E  Y  H  L  T  P  L  D  G  N  L  Q  S  R  T  M  L  L  N  G  K  P  L  Q  L  A  E  N  G  N  I  P  S  L  S  P  V  L  V  K  L  K  S  P  I  S  I  S  P  L  S  I  K  F  I  V  F  P  Y  L  S  S  P  V  C  T  *  N  *  E  I  L  L  S  D  S  Y  H  L  A  L  L  S  I  H  N  L  V  I  V  *  L  L  Q  *  T  E  L  P  N  F  M  Q  L  C  :  *  M  K  K  K  N  K  N  K  M   </first_frame>
            <second_frame>  I  S  N  P  D  H  F  S  *  H  Q  E  D  S  M  I  K  S  G  L  R  R  S  L  R  C  Q  G  Q  A  L  S  M  P  *  L  I  I  Y  I  I  L  V  Q  :  D  L  T  S  I  S  *  T  K  F  *  T  L  C  T  *  I  K  L  L  T  H  S  V  I  L  V  K  P  L  K  *  M  V  L  G  L  Q  L  G  L  E  N  L  V  G  P  S  I  T  E  V  L  M  C  L  T  P  L  *  T  V  F   : G  T  W  I  S  L  G  W  Q  P  H  I  T  L  K  Y  I  A  G  R  L  L  L  V  E  T  M  G  S  L  T  Q  V  H  L  S  Q  I  L  I  I  I   : V  H  F  F  G  I  G  *  W  E  K  E  F  L  L  L  A  T  M  H  H  H  I  C  A  R  M  P  T  V  Q  D  I  E :   Q  V  *  H  Y  F  *  S  I  *  A  T  K  L  I  M  E  S  T  S  N  L  V  *  A  S  P  R  M  S  K  R  N  Q  I  T  R  V  L  S  C  N  V  L  R  K  L  F  H  G  L  E  E  N  H  Q  M  L  H  Y  H  E  K  S  T  I  *  L  H  *  M  G  T  F  K  A  E  P  C  S  *  M  E  N  H  Y  N  S  Q  K  M  G  T  S  Q  V  C  L  Q  S  L  *  S  *  S  L  Q  Y  Q  F  P  P  C  P  S  N  S  *  Y  S  P  T  *  A  L  L  F  V  H  R  I  R  K  Y  F  C  L  I  V  I  I  W  H  S  Y  L  F  T  T  *  *  L  Y  N  C  Y  N  K  L  S  C  Q  I  L  C  S  Y  V :   K  *  K  R  R  T  K  I  K  *  </second_frame>
            <third_frame>   F  P  T  P  T  T  S  L  S  T  R  R  I  L  *  *  R  V  V  *  D  V  P  *  D  V  R  A  R  H  C  R  C  L  D  S  S  Y  I  *  S  W  C  R :   I  *  P  Q  S  R  K  Q  N  F  K  P  S  A  L  E  *  N  C  *  H  I  Q  *  S  *  S  N  H  *  N  E  W  S  L  V  F  S  L  G  W  R  I  W  W  G  L  Q  *  R  R  S  *  C  V  *  H  L  C  E  Q  F  L  :  V  L  G  S  A  W  D  G  S  H  I  S  H  *  S  I  L  Q  A  D  F  Y  W  W  K  L  W  A  P  *  H  K  Y  I  C  P  K  S  *  L  L  *  :  C  T  S  L  A  S  A  D  G  K  R  S  S  C  C  *  Q  Q  C  I  I  I  S  A  L  V  C  P  L  Y  K  T  *   : S  R  C  N  I  T  F  D  Q  S  K  Q  P  N  S  L  W  S  Q  H  R  I  *  C  K  H  H  L  A  C  Q  R  E  I  K  S  Q  E  F  F  R  A  T  S  *  E  N  Y  F  M  G  W  K  K  I  I  R  C  Y  I  I  T  R  R  V  P  S  D  S  T  R  W  E  P  S  K  Q  N  H  A  L  E  W  K  T  I  T  T  R  R  K  W  E  H  P  K  F  V  S  S  P  C  K  A  E  V  S  N  I  N  F  P  L  V  H  Q  I  H  S  I  P  L  L  K  L  S  C  L  Y  I  E  L  G  N  T  F  V  *  *  L  S  S  G  T  L  I  Y  S  Q  L  S  N  C  I  I  A  T  I  N  *  A  A  K  F  Y  A  V  M   : L  N  E  K  E  E  Q  K  *  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19710" stop="19842"/>
                    <exon start="20364" stop="20553"/>
                    <exon start="20642" stop="20767"/>
                    <exon start="20893" stop="20992"/>
                    <exon start="22060" stop="22449"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>936</number_coding_nucleotides>
                  <number_encoded_amino_acids>312</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFQPRPLLLAPGGFYDKEWFETFLEMSGPGTVDALTHHIYNLGAGSDLNLVNKILNPLHLNKIADTFSNLSQTIEMNGPWSSAWVGESGGAFNNGGPNVSNTFVNSFWYLDQLGMAATYHTKVYCRQTFIGGNYGLLDTSTFVPNPDYYSALLWHRLMGKGVLAVSNNASSYLRSYAHCTRHRAGVTLLLINLSNQTHYGVNIESSVSITSHVKEKSNHKSSFVQRLKKTISWVGRKSSDVTLSREEYHLTPLDGNLQSRTMLLNGKPLQLAENGNIPSLSPVLVKLKSPISISPLSIKFIVFPYLSSPVCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16980" e_stop="17440"/>
            <exon e_start="18159" e_stop="18416"/>
            <exon e_start="18511" e_stop="18704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.986" e_score="0.995"/>
          <exon-intron don_prob="0.993" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="16980" e_stop="17440" e_length="461"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.986">
            <gDNA_intron_boundary i_start="17441" i_stop="18158" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18159" e_stop="18416" e_length="258"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.937">
            <gDNA_intron_boundary i_start="18417" i_stop="18510" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18511" e_stop="18704" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16980" stop="17420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17108" stop="17440"/>
              <exon start="18159" stop="18414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17108" stop="17440"/>
              <exon start="18159" stop="18190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17341" stop="17440"/>
              <exon start="18159" stop="18416"/>
              <exon start="18511" stop="18704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323606" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTTCCTTTTCGGCTGTAAGCCAATATTAACGACAAATTTTAAGCTTAAGACACCTCACTACTGCAAATCCAACAAATAATTTGACTCTGCTCAATTGCTCATACATTTGACACCTCATTGTATTACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCG : CTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATCTG : GATTTATCTCACCCCTTTCTGGCAAATTCTATTCAAGGTCAGCTTGTTCCCGTCATGTGATAACTTTACCTTAGTATTTGAGATCTTGTTGTTCTTACTTTAATTAACAAACTTTGACTGGTAAACTCCATAACTTCACCTTAAACATCAAATGAACCATCTATTTACAACAGTGAGCAAATCAGACTTGATGC</gDNA_template>
            <first_frame> L  I  S  F  S  A  V  S  Q  Y  *  R  Q  I  L  S  L  R  H  L  T  T  A  N  P  T  N  N  L  T  L  L  N  C  S  Y  I  *  H  L  I  V  L  Q  S  L  S  I  F  P  L  S  N  F  D  N  G  N  S  F  V  P  K  I  P  *  F  L  N  E  *  T  L  I  V  A  I  *  Y  T  *  T  N  L  K  L  T  L  F  I  S  H  S  F  L  V  L  F  P  H  H  K  V  L  A  D  K  A  C  P  F  L  A  Q  R  L  P  A  H  Y  Q  C  C  F  F  F  L  F  G  T  C  A  L  V  I  S  N  S  C  G  V  *  G  Y  F  S  S  G  F  S  S  I  V  R :   L  *  I  C  S  K  R  G  E  A  E  *  F  K  S  Q  W  A  S  H  P  Y  C  *  S  F  W  H  C  V  L  H  F  W  H  K  *  L  K  K  Q  N  F  *  L  M  E  L  *  K  L  L  R  Q  I  I  I  M  F  A  L  L  L  T  G  G  L  K  K  S  V  T  T  T  I  A  L  G  A  R  H  L  *  *  I  W :   I  Y  L  T  P  F  W  Q  I  L  F  K  V  S  L  F  P  S  C  D  N  F  T  L  V  F  E  I  L  L  F  L  L  *  L  T  N  F  D  W  *  T  P  *  L  H  L  K  H  Q  M  N  H  L  F  T  T  V  S  K  S  D  L  M  </first_frame>
            <second_frame>  *  F  P  F  R  L  *  A  N  I  N  D  K  F  *  A  *  D  T  S  L  L  Q  I  Q  Q  I  I  *  L  C  S  I  A  H  T  F  D  T  S  L  Y  Y  K  V  C  L  Y  F  L  F  R  T  S  T  M  A  T  V  L  Y  Q  K  F  L  N  S  *  M  N  E  R  *  L  L  L  Y  N  T  L  R  Q  I  *  N  L  P  F  S  F  H  T  L  F  L  F  F  S  P  T  T  R  Y  W  L  I  K  L  A  P  F  W  H  R  G  C  L  H  I  I  S  V  A  F  S  F  F  L  E  L  V  L  W  *  S  Q  I  L  V  V  F  K  V  I  S  H  L  G  S  A  Q  L  F   : A  Y  E  S  V  Q  R  G  V  K  L  S  S  L  K  A  N  G  L  P  T  L  I  V  N  L  F  G  T  V  S  C  I  S  G  T  N  S  *  R  N  R  I  S  D  *  W  N  C  K  N  C  *  D  R  *  *  L  C  L  R  Y  S  *  L  V  A  *  R  K  V  *  P  Q  R  L  P  L  G  L  D  I  S  D  K  S   : G  F  I  S  P  L  S  G  K  F  Y  S  R  S  A  C  S  R  H  V  I  T  L  P  *  Y  L  R  S  C  C  S  Y  F  N  *  Q  T  L  T  G  K  L  H  N  F  T  L  N  I  K  *  T  I  Y  L  Q  Q  *  A  N  Q  T  *  C </second_frame>
            <third_frame>   D  F  L  F  G  C  K  P  I  L  T  T  N  F  K  L  K  T  P  H  Y  C  K  S  N  K  *  F  D  S  A  Q  L  L  I  H  L  T  P  H  C  I  T  K  F  V  Y  I  S  S  F  E  L  R  Q  W  Q  Q  F  C  T  K  N  S  L  I  L  E  *  M  N  A  N  C  C  Y  I  I  H  L  D  K  S  E  T  Y  P  F  H  F  T  L  F  S  C  S  F  P  P  P  Q  G  T  G  *  *  S  L  P  L  F  G  T  E  A  A  C  T  L  S  V  L  L  F  L  S  F  W  N  L  C  S  G  D  L  K  F  L  W  C  L  R  L  F  L  I  W  V  Q  L  N  C  S  :  L  M  N  L  F  K  E  G  *  S  *  V  V  *  K  P  M  G  F  P  P  L  L  L  I  F  L  A  L  C  P  A  F  L  A  Q  I  V  E  E  T  E  F  L  I  D  G  T  V  K  I  A  E  T  D  N  N  Y  V  C  A  T  L  D  W  W  P  K  E  K  C  N  H  N  D  C  P  W  G  S  T  S  L  I  N  L  :  D  L  S  H  P  F  L  A  N  S  I  Q  G  Q  L  V  P  V  M  *  *  L  Y  L  S  I  *  D  L  V  V  L  T  L  I  N  K  L  *  L  V  N  S  I  T  S  P  *  T  S  N  E  P  S  I  Y  N  S  E  Q  I  R  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18201" stop="18416"/>
                    <exon start="18511" stop="18570"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPMGFPPLLLIFLALCPAFLAQIVEETEFLIDGTVKIAETDNNYVCATLDWWPKEKCNHNDCPWGSTSLINLDLSHPFLANSIQGQLVPVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="26845" PGL_stop="22844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26835" e_stop="26793"/>
            <exon e_start="25580" e_stop="25032"/>
            <exon e_start="24738" e_stop="24645"/>
            <exon e_start="24520" e_stop="24384"/>
            <exon e_start="23628" e_stop="23531"/>
            <exon e_start="23270" e_stop="22844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.724" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26835" e_stop="26793" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.724" acc_prob="0.785">
            <gDNA_intron_boundary i_start="26792" i_stop="25581" i_length="1212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25580" e_stop="25032" e_length="549"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24738" e_stop="24645" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24520" e_stop="24384" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23628" e_stop="23531" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23270" e_stop="22844" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26835" stop="26793"/>
              <exon start="25580" stop="25096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26826" stop="26793"/>
              <exon start="25580" stop="25037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25580" stop="25168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25577" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="23180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="23244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25213" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="22844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="22918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23623" stop="23531"/>
              <exon start="23270" stop="22844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAG : ATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG : GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA : TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG : GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG : GCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGATCAGTGAAGACATGGTTGAATGTACTTTATGCTAACATCCATTTTTTTTATAAATTCCAATCAACCATTCATCGA</gDNA_template>
            <first_frame> F  L  R  F  F  L  Q  F  I  F  F  G  F  S   : D  N  F  L  I  Y  Q  V  H  P  R  G  I  T  F  Y  L  S  K  N  A  W  S  *  E  V  S  F  T  S  E  C  *  K  K  I  C  G  S  C  G  P  *  *  F  W  I  K  S  L  *  F  *  Q  *  V  R  Q  E  A  N  C  K  T  I  Q  E  N  I  I  G  A  F  C  S  C  P  K  F  E  Y  K  P  F  *  *  *  *  N  *  R  D  S  F  T  C  L  L  N  F  D  G  K  K  *  I  Q  E  *  F  P  G  V  W  W  I  *  E  P  N  C  R  G  V  G  K  L  C  R  L  Q  V  R  R  D  Y  K  I  C  *  *  L  P  E  D  C  T  R  H  A  R  G  C  N  K  N  F  D  N  F  T  S  T  G  R  T  N  Y  K  N  P  Y  D  C  S  R  Y  R  S  *  S  *  Q   : G  *  K  T  L  G  E  S  W  R  H  I  F  E  D  L  E  A  K  D  E  S  P  D  Y  R  A  R  Y  H  K  N :   V  R  *  S  S  S  K  K  G  Q  P  L  G  A  E  G  E  I  R  I  E  L  C  T  Q  G  K  V  K  F  K  D  T  T  P  R  A  Y  K  C  N  A  E  S  *   : G  *  E  S  Q  A  R  *  W  T  V  R  T  Q  R  S  V  G  G  A  Q  E  Y  G  C  *  H  G  I  *  N  *  E  :  A  *  R  C  I  G  S  Y  *  T  G  C  *  *  A  W  H  Q  S  S  R  G  Q  P  E  D  S  A  L  A  W  K  V  N  Q  *  T  S  V  V  G  T  Y  *  *  A  F  R  R  *  L  Q  F  I  I  S  A  I  L  E  F  F  T  N  A  S  L  C  N  F  M  L  L  C  I  I  I  L  Q  Y  S  M  T  V  N  Q  V  N  C  M  V  F  G  R  Q  D  D  K  I  T  T  R  P  L  *  R  N  N  V  Q  H  K  *  D  Y  C  L  I  S  E  D  M  V  E  C  T  L  C  *  H  P  F  F  L  *  I  P  I  N  H  S  S  </first_frame>
            <second_frame>  F  L  D  F  F  Y  N  L  S  S  S  D  F  Q  :  I  I  S  *  S  T  R  S  I  P  V  G  L  L  S  I  Y  Q  K  M  H  G  L  K  K  S  P  L  H  R  S  A  R  K  K  S  A  D  P  V  A  H  S  N  S  G  S  N  P  F  D  S  D  N  E  S  D  K  K  Q  T  V  K  P  S  R  K  I  S  S  E  P  S  A  A  A  P  N  L  S  T  N  P  F  D  D  D  E  I  K  E  T  P  S  H  A  Y  S  T  S  T  A  R  N  K  Y  K  N  D  F  R  E  S  G  G  F  E  N  Q  T  V  E  E  L  E  N  Y  A  V  Y  R  S  E  E  T  T  K  S  V  N  S  C  L  K  I  A  Q  D  M  R  E  D  A  T  K  T  L  I  T  L  H  Q  Q  G  E  Q  I  T  R  T  H  M  T  A  A  D  I  D  H  D  L  S  R  :  G  E  K  L  L  G  S  L  G  G  I  F  S  K  T  W  K  P  K  T  S  R  P  I  T  G  P  V  I  T  R   : M  S  D  D  P  V  Q  R  R  G  N  H  L  E  Q  R  E  K  L  G  L  N  S  A  P  K  A  R  S  S  S  R  T  P  H  P  E  P  T  N  A  M  Q  K  V  E  :  A  E  K  A  K  Q  D  D  G  L  S  E  L  S  D  L  L  G  E  L  K  N  M  A  V  D  M  G  S  E  I  E  R :   H  K  D  A  L  D  H  T  E  Q  D  V  D  E  L  G  T  R  V  Q  G  A  N  R  R  I  R  R  L  L  G  K  *  T  S  R  H  L  L  W  E  P  I  N  E  L  S  D  V  N  F  S  L  S  F  Q  L  F  L  S  F  S  Q  M  L  L  S  V  I  L  C  Y  F  V  L  *  F  Y  N  I  L  *  Q  *  T  K  L  I  V  W  Y  L  E  G  R  T  T  K  L  L  L  D  H  C  R  E  I  T  C  N  T  N  K  I  T  V  *  S  V  K  T  W  L  N  V  L  Y  A  N  I  H  F  F  Y  K  F  Q  S  T  I  H  R </second_frame>
            <third_frame>   S  *  I  F  S  T  I  Y  L  L  R  I  F  R :   *  F  L  N  L  P  G  P  S  P  W  D  Y  F  L  S  I  K  K  C  M  V  L  R  S  L  L  Y  I  G  V  L  E  K  N  L  R  I  L  W  P  I  V  I  L  D  Q  I  P  L  I  L  T  M  S  Q  T  R  S  K  L  *  N  H  P  G  K  Y  H  R  S  L  L  Q  L  P  Q  I  *  V  Q  T  L  L  M  M  M  K  L  K  R  L  L  H  M  L  T  Q  L  R  R  Q  E  I  N  T  R  M  I  S  G  S  L  V  D  L  R  T  K  L  *  R  S  W  K  T  M  P  S  T  G  Q  K  R  L  Q  N  L  L  I  A  A  *  R  L  H  K  T  C  E  R  M  Q  Q  K  L  *  *  L  Y  I  N  R  E  N  K  L  Q  E  P  I  *  L  Q  Q  I  S  I  M  I  L  A  G :   V  K  N  S  W  G  V  L  E  A  Y  F  R  R  L  G  S  Q  R  R  V  A  R  L  Q  G  P  L  S  Q  E  :  C  Q  M  I  Q  F  K  E  G  A  T  T  W  S  R  G  R  N  *  D  *  T  L  H  P  R  Q  G  Q  V  Q  G  H  H  T  Q  S  L  Q  M  Q  C  R  K  L  R :   L  R  K  P  S  K  M  M  D  C  Q  N  S  A  I  C  W  G  S  S  R  I  W  L  L  T  W  D  L  K  L  R   : G  I  K  M  H  W  I  I  L  N  R  M  L  M  S  L  A  P  E  F  K  G  P  T  G  G  F  G  A  C  L  E  S  K  P  V  D  I  C  C  G  N  L  L  M  S  F  Q  T  L  T  S  V  Y  H  F  S  Y  S  *  V  F  H  K  C  F  S  L  *  F  Y  V  T  L  Y  Y  N  F  T  I  F  Y  D  S  K  P  S  *  L  Y  G  I  W  K  A  G  R  Q  N  Y  Y  S  T  I  V  E  K  *  R  A  T  Q  I  R  L  L  F  D  Q  *  R  H  G  *  M  Y  F  M  L  T  S  I  F  F  I  N  S  N  Q  P  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25568" stop="25032"/>
                    <exon start="24738" stop="24645"/>
                    <exon start="24520" stop="24384"/>
                    <exon start="23628" stop="23531"/>
                    <exon start="23270" stop="23171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STRSIPVGLLSIYQKMHGLKKSPLHRSARKKSADPVAHSNSGSNPFDSDNESDKKQTVKPSRKISSEPSAAAPNLSTNPFDDDEIKETPSHAYSTSTARNKYKNDFRESGGFENQTVEELENYAVYRSEETTKSVNSCLKIAQDMREDATKTLITLHQQGEQITRTHMTAADIDHDLSRGEKLLGSLGGIFSKTWKPKTSRPITGPVITRMSDDPVQRRGNHLEQREKLGLNSAPKARSSSRTPHPEPTNAMQKVEAEKAKQDDGLSELSDLLGELKNMAVDMGSEIERHKDALDHTEQDVDELGTRVQGANRRIRRLLGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26845" e_stop="26793"/>
            <exon e_start="25593" e_stop="25032"/>
            <exon e_start="24738" e_stop="24645"/>
            <exon e_start="24520" e_stop="24384"/>
            <exon e_start="23628" e_stop="23531"/>
            <exon e_start="23270" e_stop="22844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.724" acc_prob="0.000" e_score="0.981"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="26845" e_stop="26793" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.724" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26792" i_stop="25594" i_length="1199"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="25593" e_stop="25032" e_length="562"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24738" e_stop="24645" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24520" e_stop="24384" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23628" e_stop="23531" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23270" e_stop="22844" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26845" stop="26793"/>
              <exon start="25593" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="23001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25580" stop="25168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25577" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="23180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="23244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25032"/>
              <exon start="24738" stop="24703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25213" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="22844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="22918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23623" stop="23531"/>
              <exon start="23270" stop="22844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATTATAGTTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAG : TCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG : GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA : TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG : GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG : GCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGATCAGTGAAGACATGGTTGAATGTACTTTATGCTAACATCCATTTTTTTTATAAATTCCAATCAACCATTCATCGA</gDNA_template>
            <first_frame> H  I  I  V  S  *  I  F  S  T  I  Y  L  L  R  I  F  S :   L  F  L  Q  I  I  S  *  S  T  R  S  I  P  V  G  L  L  S  I  Y  Q  K  M  H  G  L  K  K  S  P  L  H  R  S  A  R  K  K  S  A  D  P  V  A  H  S  N  S  G  S  N  P  F  D  S  D  N  E  S  D  K  K  Q  T  V  K  P  S  R  K  I  S  S  E  P  S  A  A  A  P  N  L  S  T  N  P  F  D  D  D  E  I  K  E  T  P  S  H  A  Y  S  T  S  T  A  R  N  K  Y  K  N  D  F  R  E  S  G  G  F  E  N  Q  T  V  E  E  L  E  N  Y  A  V  Y  R  S  E  E  T  T  K  S  V  N  S  C  L  K  I  A  Q  D  M  R  E  D  A  T  K  T  L  I  T  L  H  Q  Q  G  E  Q  I  T  R  T  H  M  T  A  A  D  I  D  H  D  L  S  R  :  G  E  K  L  L  G  S  L  G  G  I  F  S  K  T  W  K  P  K  T  S  R  P  I  T  G  P  V  I  T  R   : M  S  D  D  P  V  Q  R  R  G  N  H  L  E  Q  R  E  K  L  G  L  N  S  A  P  K  A  R  S  S  S  R  T  P  H  P  E  P  T  N  A  M  Q  K  V  E  :  A  E  K  A  K  Q  D  D  G  L  S  E  L  S  D  L  L  G  E  L  K  N  M  A  V  D  M  G  S  E  I  E  R :   H  K  D  A  L  D  H  T  E  Q  D  V  D  E  L  G  T  R  V  Q  G  A  N  R  R  I  R  R  L  L  G  K  *  T  S  R  H  L  L  W  E  P  I  N  E  L  S  D  V  N  F  S  L  S  F  Q  L  F  L  S  F  S  Q  M  L  L  S  V  I  L  C  Y  F  V  L  *  F  Y  N  I  L  *  Q  *  T  K  L  I  V  W  Y  L  E  G  R  T  T  K  L  L  L  D  H  C  R  E  I  T  C  N  T  N  K  I  T  V  *  S  V  K  T  W  L  N  V  L  Y  A  N  I  H  F  F  Y  K  F  Q  S  T  I  H  R </first_frame>
            <second_frame>  T  L  *  F  L  R  F  F  L  Q  F  I  F  F  G  F  S   : V  S  F  C  R  *  F  L  N  L  P  G  P  S  P  W  D  Y  F  L  S  I  K  K  C  M  V  L  R  S  L  L  Y  I  G  V  L  E  K  N  L  R  I  L  W  P  I  V  I  L  D  Q  I  P  L  I  L  T  M  S  Q  T  R  S  K  L  *  N  H  P  G  K  Y  H  R  S  L  L  Q  L  P  Q  I  *  V  Q  T  L  L  M  M  M  K  L  K  R  L  L  H  M  L  T  Q  L  R  R  Q  E  I  N  T  R  M  I  S  G  S  L  V  D  L  R  T  K  L  *  R  S  W  K  T  M  P  S  T  G  Q  K  R  L  Q  N  L  L  I  A  A  *  R  L  H  K  T  C  E  R  M  Q  Q  K  L  *  *  L  Y  I  N  R  E  N  K  L  Q  E  P  I  *  L  Q  Q  I  S  I  M  I  L  A  G :   V  K  N  S  W  G  V  L  E  A  Y  F  R  R  L  G  S  Q  R  R  V  A  R  L  Q  G  P  L  S  Q  E  :  C  Q  M  I  Q  F  K  E  G  A  T  T  W  S  R  G  R  N  *  D  *  T  L  H  P  R  Q  G  Q  V  Q  G  H  H  T  Q  S  L  Q  M  Q  C  R  K  L  R :   L  R  K  P  S  K  M  M  D  C  Q  N  S  A  I  C  W  G  S  S  R  I  W  L  L  T  W  D  L  K  L  R   : G  I  K  M  H  W  I  I  L  N  R  M  L  M  S  L  A  P  E  F  K  G  P  T  G  G  F  G  A  C  L  E  S  K  P  V  D  I  C  C  G  N  L  L  M  S  F  Q  T  L  T  S  V  Y  H  F  S  Y  S  *  V  F  H  K  C  F  S  L  *  F  Y  V  T  L  Y  Y  N  F  T  I  F  Y  D  S  K  P  S  *  L  Y  G  I  W  K  A  G  R  Q  N  Y  Y  S  T  I  V  E  K  *  R  A  T  Q  I  R  L  L  F  D  Q  *  R  H  G  *  M  Y  F  M  L  T  S  I  F  F  I  N  S  N  Q  P  F  I   </second_frame>
            <third_frame>   H  Y  S  F  L  D  F  F  Y  N  L  S  S  S  D  F  Q  :  S  L  S  A  D  N  F  L  I  Y  Q  V  H  P  R  G  I  T  F  Y  L  S  K  N  A  W  S  *  E  V  S  F  T  S  E  C  *  K  K  I  C  G  S  C  G  P  *  *  F  W  I  K  S  L  *  F  *  Q  *  V  R  Q  E  A  N  C  K  T  I  Q  E  N  I  I  G  A  F  C  S  C  P  K  F  E  Y  K  P  F  *  *  *  *  N  *  R  D  S  F  T  C  L  L  N  F  D  G  K  K  *  I  Q  E  *  F  P  G  V  W  W  I  *  E  P  N  C  R  G  V  G  K  L  C  R  L  Q  V  R  R  D  Y  K  I  C  *  *  L  P  E  D  C  T  R  H  A  R  G  C  N  K  N  F  D  N  F  T  S  T  G  R  T  N  Y  K  N  P  Y  D  C  S  R  Y  R  S  *  S  *  Q   : G  *  K  T  L  G  E  S  W  R  H  I  F  E  D  L  E  A  K  D  E  S  P  D  Y  R  A  R  Y  H  K  N :   V  R  *  S  S  S  K  K  G  Q  P  L  G  A  E  G  E  I  R  I  E  L  C  T  Q  G  K  V  K  F  K  D  T  T  P  R  A  Y  K  C  N  A  E  S  *   : G  *  E  S  Q  A  R  *  W  T  V  R  T  Q  R  S  V  G  G  A  Q  E  Y  G  C  *  H  G  I  *  N  *  E  :  A  *  R  C  I  G  S  Y  *  T  G  C  *  *  A  W  H  Q  S  S  R  G  Q  P  E  D  S  A  L  A  W  K  V  N  Q  *  T  S  V  V  G  T  Y  *  *  A  F  R  R  *  L  Q  F  I  I  S  A  I  L  E  F  F  T  N  A  S  L  C  N  F  M  L  L  C  I  I  I  L  Q  Y  S  M  T  V  N  Q  V  N  C  M  V  F  G  R  Q  D  D  K  I  T  T  R  P  L  *  R  N  N  V  Q  H  K  *  D  Y  C  L  I  S  E  D  M  V  E  C  T  L  C  *  H  P  F  F  L  *  I  P  I  N  H  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25568" stop="25032"/>
                    <exon start="24738" stop="24645"/>
                    <exon start="24520" stop="24384"/>
                    <exon start="23628" stop="23531"/>
                    <exon start="23270" stop="23171"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STRSIPVGLLSIYQKMHGLKKSPLHRSARKKSADPVAHSNSGSNPFDSDNESDKKQTVKPSRKISSEPSAAAPNLSTNPFDDDEIKETPSHAYSTSTARNKYKNDFRESGGFENQTVEELENYAVYRSEETTKSVNSCLKIAQDMREDATKTLITLHQQGEQITRTHMTAADIDHDLSRGEKLLGSLGGIFSKTWKPKTSRPITGPVITRMSDDPVQRRGNHLEQREKLGLNSAPKARSSSRTPHPEPTNAMQKVEAEKAKQDDGLSELSDLLGELKNMAVDMGSEIERHKDALDHTEQDVDELGTRVQGANRRIRRLLGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="42910" PGL_stop="41684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42910" e_stop="41684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="42910" e_stop="41684" e_length="1227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="42293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42906" stop="42188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42375" stop="41684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42073" stop="41684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTCAGATACACCACAGGTAAAAACTGATGATTGTAAACACTGGGCAAGTCATTTTGCTGGTGTTGGCATTGACAGTGGGCATGATTTTGTGATGGAGCCATCTAATGGTAAAGAATGGGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</gDNA_template>
            <first_frame> K  N  W  V  L  L  W  R  C  W  F  L  W  M  C  S  V  A  H  H  G  S  K  G  E  T  *  G  G  L  G  *  G  N  I  C  *  V  G  C  L  *  Y  G  R  D  S  G  R  E  M  E  *  R  G  R  G  I  I  S  *  S  C  I  F  Q  S  C  S  I  R  Q  E  F  L  G  P  P  C  C  *  I  S  F  T  E  Q  E  R  S  C  *  L  L  L  Q  C  L  Y  F  A  E  A  C  Q  A  E  *  V  *  P  I  K  Y  R  Q  *  *  R  *  M  A  G  D  *  *  *  C  C  C  Y  G  S  S  N  D  R  *  R  R  G  F  C  G  *  I  T  N  I  S  K  L  S  W  S  Q  *  D  I  C  D  *  K  T  S  I  *  *  R  S  W  C  C  N  L  G  R  L  S  D  D  K  F  L  Q  E  E  G  L  E  *  C  V  K  S  M  S  *  *  I  D  *  *  *  Q  *  L  W  S  Q  Y  S  A  S  R  Q  T  S  F  K  *  S  G  *  P  *  C  *  R  *  L  L  Y  H  *  C  S  W  G  F  F  R  Y  T  T  G  K  N  *  *  L  *  T  L  G  K  S  F  C  W  C  W  H  *  Q  W  A  *  F  C  D  G  A  I  *  W  *  R  M  G  Y  G  R  V  L  E  L  S  *  E  *  S  *  F  V  T  N  L  L  Y  D  *  G  S  V  W  R  R  S  L  E  F  Q  A  Q  R  W  S  Q  F  K  Q  A  L  T  C  C  I  *  Y  P  F  I  F  C  R  W  I  I  L  G  T  L  L  A  K  V  R  S  I  F  T  C  I  L  F  S  G  E  R  T  E  H  V  R  D  K  S  *  D  F  R  P  C  S  W  L  L  V  G  S  C  F  E  V  G  G  *  D  *  F  I  C  K  L  Y  G  R  V  E  P  S  F  D  K  *  K  K  K </first_frame>
            <second_frame>  R  I  G  C  S  C  G  D  A  G  S  F  G  C  V  R  L  H  I  M  E  A  R  E  K  L  K  A  A  L  G  E  E  T  F  V  R  L  G  V  Y  D  M  G  E  I  V  A  E  K  W  S  E  E  E  E  E  L  F  H  E  V  V  F  S  N  P  A  A  L  G  K  N  F  W  D  H  L  A  V  E  F  P  S  R  S  K  R  D  L  V  S  Y  Y  F  N  V  F  I  L  R  K  R  A  K  Q  N  R  F  D  P  S  N  I  D  S  D  N  D  E  W  Q  E  I  D  D  D  V  V  A  T  G  A  Q  M  T  D  D  D  E  D  S  V  V  E  S  P  I  Y  Q  N  Y  P  G  H  N  E  I  Y  V  T  E  K  Q  A  Y  D  E  E  A  G  V  A  T  L  E  D  Y  Q  T  I  N  F  C  R  R  K  V  L  S  D  V  S  K  A  C  P  D  E  L  I  D  N  N  S  S  C  G  H  N  I  Q  P  L  D  R  H  H  S  N  E  V  G  N  H  D  V  E  D  N  S  C  T  T  D  A  A  G  A  S  S  D  T  P  Q  V  K  T  D  D  C  K  H  W  A  S  H  F  A  G  V  G  I  D  S  G  H  D  F  V  M  E  P  S  N  G  K  E  W  D  M  G  G  Y  L  S  C  P  K  N  E  V  D  L  L  P  T  C  S  M  I  E  E  V  F  G  D  E  A  W  S  S  K  H  R  D  G  H  S  L  S  K  H  *  P  V  A  Y  D  T  R  L  F  F  A  V  G  S  S  L  E  H  F  L  Q  K  *  D  P  F  L  L  V  Y  Y  L  V  V  K  G  Q  S  M  L  G  I  K  V  E  I  F  D  L  A  L  G  C  *  *  E  A  V  L  R  *  A  V  R  I  N  L  Y  V  N  Y  M  A  E  L  S  H  L  S  T  N  E  K  K   </second_frame>
            <third_frame>   E  L  G  A  P  V  E  M  L  V  P  L  D  V  F  G  C  T  S  W  K  Q  G  R  N  L  R  R  P  W  V  R  K  H  L  L  G  W  V  F  M  I  W  E  R  *  W  Q  R  N  G  V  K  R  K  R  N  Y  F  M  K  L  Y  F  P  I  L  Q  H  *  A  R  I  S  G  T  T  L  L  L  N  F  L  H  G  A  R  E  I  L  L  A  I  T  S  M  S  L  F  C  G  S  V  P  S  R  I  G  L  T  H  Q  I  *  T  V  I  T  M  N  G  R  R  L  M  M  M  L  L  L  R  E  L  K  *  Q  M  T  T  R  I  L  W  L  N  H  Q  Y  I  K  I  I  L  V  T  M  R  Y  M  *  L  K  N  K  H  M  M  K  K  L  V  L  Q  P  W  K  I  I  R  R  *  I  F  A  G  G  R  S  *  V  M  C  Q  K  H  V  L  M  N  *  L  I  I  T  V  V  V  V  T  I  F  S  L  *  T  D  I  I  Q  M  K  W  V  T  M  M  L  K  I  T  L  V  P  L  M  Q  L  G  L  L  Q  I  H  H  R  *  K  L  M  I  V  N  T  G  Q  V  I  L  L  V  L  A  L  T  V  G  M  I  L  *  W  S  H  L  M  V  K  N  G  I  W  E  G  T  *  A  V  L  R  M  K  L  I  C  Y  Q  L  A  L  *  L  R  K  C  L  E  T  K  P  G  V  P  S  T  E  M  V  T  V  *  A  S  I  D  L  L  H  M  I  P  V  Y  F  L  P  L  D  H  P  W  N  T  S  C  K  S  E  I  H  F  Y  L  Y  I  I  *  W  *  K  D  R  A  C  *  G  *  K  L  R  F  S  T  L  L  L  V  V  S  R  K  L  F  *  G  R  R  L  G  L  I  Y  M  *  I  I  W  P  S  *  A  I  F  R  Q  M  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42909" stop="41938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIGCSCGDAGSFGCVRLHIMEAREKLKAALGEETFVRLGVYDMGEIVAEKWSEEEEELFHEVVFSNPAALGKNFWDHLAVEFPSRSKRDLVSYYFNVFILRKRAKQNRFDPSNIDSDNDEWQEIDDDVVATGAQMTDDDEDSVVESPIYQNYPGHNEIYVTEKQAYDEEAGVATLEDYQTINFCRRKVLSDVSKACPDELIDNNSSCGHNIQPLDRHHSNEVGNHDVEDNSCTTDAAGASSDTPQVKTDDCKHWASHFAGVGIDSGHDFVMEPSNGKEWDMGGYLSCPKNEVDLLPTCSMIEEVFGDEAWSSKHRDGHSLSKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="45041" PGL_stop="43069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45041" e_stop="44886"/>
            <exon e_start="43800" e_stop="43653"/>
            <exon e_start="43436" e_stop="43069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.687" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45041" e_stop="44886" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.687" acc_prob="0.981">
            <gDNA_intron_boundary i_start="44885" i_stop="43801" i_length="1085"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43800" e_stop="43653" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43652" i_stop="43437" i_length="216"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="43436" e_stop="43069" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45041" stop="44886"/>
              <exon start="43800" stop="43653"/>
              <exon start="43436" stop="43069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45040" stop="44886"/>
              <exon start="43800" stop="43653"/>
              <exon start="43436" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283497" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAG : TTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAG : GTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGGTTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATAGTAAAAATATATCCGTG</gDNA_template>
            <first_frame> F  F  P  K  I  N  F  S  S  S  T  P  L  I  D  L  D  F  S  S  *  R  S  N  Q  P  P  I  L  L  I  R  F  I  L  Y  R  L  V  P  L  L  D  L  S  V  W  K  S  N  S  E  :  L  N  M  V  Q  K  R  P  Y  S  E  E  K  L  Y  E  V  S  S  K  Q  P  R  H  V  E  P  S  T  Q  L  V  S  F  L  Q  F  P  C  E  S  V  A  P  N  S  Y  T  S   : G  G  D  E  E  K  F  S  E  V  R  A  F  S  E  K  R  P  D  S  C  D  V  T  A  V  P  V  S  S  E  K  A  I  E  T  S  I  H  G  S  A  S  N  S  S  W  T  S  S  S  T  S  E  E  D  I  R  S  E  V  P  F  H  V  L  T  A  S  K  Y  Y  S  S  D  P  P  F  R  V  V  I  H  P  M  E  V  Y  S  P  L  F  N  N  P  P  R  K  S  V  P  I  G  P  D  F  Q  A  E  L  P  E  W  G  A  Y  D  S  K  N  I  S  V </first_frame>
            <second_frame>  F  S  P  K  S  I  S  H  L  L  P  L  *  S  T  L  I  F  L  L  E  D  Q  I  N  L  R  Y  F  *  F  V  S  F  S  I  D  W  Y  L  F  W  I  Y  P  S  G  N  R  I  P  S :   *  I  W  C  K  K  D  H  T  V  K  K  S  C  M  R  F  H  L  S  S  R  D  M  *  N  R  V  L  S  *  F  P  F  C  S  F  R  V  N  Q  W  L  P  T  L  T  L  Q  :  V  A  M  R  R  N  F  Q  K  S  E  L  L  V  R  K  D  L  I  V  A  M  *  L  L  S  L  F  L  Q  R  K  Q  L  R  R  A  S  M  A  L  L  Q  T  L  L  G  P  L  V  A  P  A  K  K  T  L  G  P  R  C  L  F  M  Y  *  R  L  L  N  I  T  V  V  I  L  H  S  E  L  L  F  I  Q  W  R  S  I  P  L  F  S  T  I  L  L  G  N  R  F  P  L  D  Q  I  S  K  P  N  Y  Q  N  G  V  H  M  I  V  K  I  Y  P   </second_frame>
            <third_frame>   F  P  Q  N  Q  F  L  I  F  Y  P  F  N  R  P  *  F  F  F  L  K  I  K  S  T  S  D  T  S  N  S  F  H  S  L  S  I  G  T  S  F  G  S  I  R  L  E  I  E  F  R   : V  K  Y  G  A  K  K  T  I  Q  *  R  K  V  V  *  G  F  I  *  A  A  E  T  C  R  T  E  Y  S  A  S  F  L  F  A  V  S  V  *  I  S  G  S  Q  L  L  H  F  R :   W  R  *  G  E  I  F  R  S  Q  S  F  *  *  E  K  T  *  *  L  R  C  D  C  C  P  C  F  F  R  E  S  N  *  D  E  H  P  W  L  C  F  K  L  F  L  D  L  *  *  H  Q  R  R  R  H  *  V  R  G  A  F  S  C  I  D  G  F  *  I  L  Q  *  *  S  S  I  P  S  C  Y  S  S  N  G  G  L  F  P  S  F  Q  Q  S  S  S  E  I  G  S  H  W  T  R  F  P  S  R  I  T  R  M  G  C  I  *  *  *  K  Y  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44978" stop="44886"/>
                    <exon start="43800" stop="43653"/>
                    <exon start="43436" stop="43069"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSNQPPILLIRFILYRLVPLLDLSVWKSNSELNMVQKRPYSEEKLYEVSSKQPRHVEPSTQLVSFLQFPCESVAPNSYTSGGDEEKFSEVRAFSEKRPDSCDVTAVPVSSEKAIETSIHGSASNSSWTSSSTSEEDIRSEVPFHVLTASKYYSSDPPFRVVIHPMEVYSPLFNNPPRKSVPIGPDFQAELPEWGAYDSKNISV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="48698" PGL_stop="47951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48698" e_stop="47951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48698" e_stop="47951" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48698" stop="47975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48698" stop="48047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48634" stop="47951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCATGTTTTTTTTGTGTGTGAACTTCAG</gDNA_template>
            <first_frame> L  *  M  Q  W  S  Q  R  S  C  *  L  L  E  T  S  D  S  G  E  *  L  P  K  E  S  V  C  *  P  S  C  L  L  Y  V  Q  H  S  F  R  Q  E  D  C  Y  P  W  I  C  F  Q  E  R  Y  R  *  H  *  R  D  T  S  N  *  C  V  Q  R  P  I  G  R  Q  C  *  L  E  H  I  *  S  T  G  H  *  G  S  N  P  K  G  S  V  N  E  K  V  *  L  G  *  S  N  S  P  P  A  N  E  P  H  C  D  E  A  T  Q  C  S  M  G  C  L  C  S  H  K  R  R  P  R  P  L  S  F  D  R  V  G  *  V  Q  D  S  *  F  Q  E  D  L  *  *  H  A  K  T  C  I  C  V  *  W  K  E  H  C  *  *  T  E  A  Q  R  N  R  V  H  R  L  L  H  W  E  T  F  R  W  M  A  Q  G  Y  A  C  C  G  I  T  P  L  E  *  A  L  N  M  R  A  K  S  I  Y  I  F  P  V  L  V  F  S  I  Q  A  Y  N  C  C  F  L  V  A  L  L  K  M  L  T  F  I  S  C  F  F  C  V  *  T  S  </first_frame>
            <second_frame>  C  E  C  N  G  L  K  E  V  A  N  Y  W  K  Q  V  I  Q  V  N  D  Y  Q  K  N  R  F  V  N  R  V  V  S  S  M  F  N  T  V  S  G  K  K  I  A  I  L  G  F  A  F  K  K  D  T  G  D  T  R  E  T  P  A  I  D  V  C  K  G  L  L  G  D  N  A  N  L  S  I  Y  D  P  Q  V  T  E  D  Q  I  R  K  D  L  S  M  K  K  F  D  W  D  N  P  I  H  L  Q  P  M  S  P  T  V  M  K  Q  L  N  V  V  W  D  A  Y  A  A  T  K  G  A  H  G  L  C  L  L  T  E  W  D  E  F  K  T  L  D  F  K  K  I  Y  D  N  M  Q  K  P  A  F  V  F  D  G  R  N  I  V  D  E  Q  K  L  R  E  I  G  F  I  V  Y  S  I  G  K  P  L  D  G  W  L  K  D  M  P  A  V  A  *  P  P  W  N  K  H  *  T  *  E  Q  N  L  F  I  F  F  Q  F  L  S  F  P  F  K  L  T  I  V  V  S  *  *  H  C  *  K  C  L  P  L  Y  H  V  F  F  V  C  E  L  Q </second_frame>
            <third_frame>   V  N  A  M  V  S  K  K  L  L  T  T  G  N  K  *  F  R  *  M  T  T  K  R  I  G  L  L  T  E  L  S  P  L  C  S  T  Q  F  Q  A  R  R  L  L  S  L  D  L  L  S  R  K  I  Q  V  T  L  E  R  H  Q  Q  L  M  C  A  K  A  Y  W  E  T  M  L  T  *  A  Y  M  I  H  R  S  L  R  I  K  S  E  R  I  C  Q  *  K  S  L  I  G  I  I  Q  F  T  S  S  Q  *  A  P  L  *  *  S  N  S  M  *  Y  G  M  L  M  Q  P  Q  K  A  P  T  A  S  V  F  *  P  S  G  M  S  S  R  L  L  I  S  R  R  F  M  I  T  C  K  N  L  H  L  C  L  M  E  G  T  L  L  M  N  R  S  S  E  K  S  G  S  S  S  T  P  L  G  N  L  *  M  D  G  S  R  I  C  L  L  W  H  N  P  P  G  I  S  T  E  H  E  S  K  I  Y  L  Y  F  S  S  S  C  L  F  H  S  S  L  Q  L  L  F  P  S  S  I  V  K  N  A  Y  L  Y  I  M  F  F  L  C  V  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48697" stop="48104"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CECNGLKEVANYWKQVIQVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDNANLSIYDPQVTEDQIRKDLSMKKFDWDNPIHLQPMSPTVMKQLNVVWDAYAATKGAHGLCLLTEWDEFKTLDFKKIYDNMQKPAFVFDGRNIVDEQKLREIGFIVYSIGKPLDGWLKDMPAVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="56111" PGL_stop="58789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56111" e_stop="56460"/>
            <exon e_start="56545" e_stop="56598"/>
            <exon e_start="56836" e_stop="56969"/>
            <exon e_start="57063" e_stop="57363"/>
            <exon e_start="57926" e_stop="57997"/>
            <exon e_start="58378" e_stop="58443"/>
            <exon e_start="58528" e_stop="58789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="56111" e_stop="56460" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56545" e_stop="56598" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.919">
            <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56836" e_stop="56969" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.905" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57063" e_stop="57363" e_length="301"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57926" e_stop="57997" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58378" e_stop="58443" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="58528" e_stop="58789" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56111" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57363"/>
              <exon start="57926" stop="57997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56120" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56135" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56139" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56179" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57363"/>
              <exon start="57926" stop="57997"/>
              <exon start="58378" stop="58406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56260" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56279" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57363"/>
              <exon start="57926" stop="57997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56312" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57363"/>
              <exon start="57926" stop="57997"/>
              <exon start="58378" stop="58443"/>
              <exon start="58528" stop="58552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56342" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56355" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57363"/>
              <exon start="57926" stop="57997"/>
              <exon start="58378" stop="58443"/>
              <exon start="58528" stop="58636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56577" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57363"/>
              <exon start="57926" stop="57997"/>
              <exon start="58378" stop="58443"/>
              <exon start="58528" stop="58779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56877" stop="56969"/>
              <exon start="57063" stop="57363"/>
              <exon start="57926" stop="57997"/>
              <exon start="58378" stop="58443"/>
              <exon start="58528" stop="58783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56877" stop="56969"/>
              <exon start="57063" stop="57363"/>
              <exon start="57926" stop="57997"/>
              <exon start="58378" stop="58443"/>
              <exon start="58528" stop="58779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57256" stop="57363"/>
              <exon start="57926" stop="57997"/>
              <exon start="58378" stop="58443"/>
              <exon start="58528" stop="58789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57935" stop="57997"/>
              <exon start="58378" stop="58443"/>
              <exon start="58528" stop="58783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58396" stop="58443"/>
              <exon start="58528" stop="58783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCTTCCATCTGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG : GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG : GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA : GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAG : GTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG : GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG : CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAACCTCTA</gDNA_template>
            <first_frame> N  S  S  I  C  L  C  Q  L  K  S  H  R  P  P  S  P  S  C  V  S  P  P  S  L  F  S  N  F  G  F  S  P  A  K  S  H  Q  F  Y  R  P  I  L  F  Y  K  T  P  H  Q  A  P  N  F  P  H  S  H  T  D  K  I  T  I  F  S  *  K  I  W  Q  W  L  L  S  V  S  L  V  L  R  F  L  S  S  L  L  L  H  H  P  I  *  A  R  P  I  S  P  R  A  P  F  P  S  D  P  V  L  H  C  S  L  V  F  R :   G  P  V  A  S  N  L  R  C  L  R  *  M  P  S  *  M  R :   L  L  L  T  S  R  T  I  Q  N  L  S  L  R  K  A  W  R  K  S  P  R  L  N  T  V  F  Q  M  L  H  P  F  K  H  S  C  L  R  Q  L  I  L  W   : S  L  W  I  Q  G  T  L  W  S  C  S  *  S  K  T  I  V  K  F  L  *  G  R  R  R  H  C  P  S  R  L  F  I  W  P  H  H  L  F  H  R  P  L  F  S  N  S  C  L  L  Q  V  P  L  L  L  Q  L  Q  Q  L  L  H  F  L  H  L  H  L  Q  S  L  N  P  H  I  L  Q  *  N  V  P  W  P  E  H  S  I  D  H  L  P  Q  G  Q  H  L  L  L  R :   *  V  T  R  S  R  K  G  K  W  S  A  L  L  R  L  *  N  *  *  M  K  L  R :   L  I  K  L  E  P  *  L  T  *  L  Q  R  M  V  S  P  L  V  W  T  R :   L  Y  L  S  L  N  H  D  R  K  K  *  S  W  C  A  T  *  V  D  E  A  E  *  N  S  K  V  I  E  S  K  S  V  L  S  S  R  H  I  C  S  E  D  W  F  T  I  T  L  V  E  I  Y  D  H  I  Y  S  L  Y  Y  S  F  S  L  C  C  S  *  I  L  E  L  Y  F  L  Y  K  V  V  T  *  *  *  P  L </first_frame>
            <second_frame>  T  L  P  S  A  S  A  S  L  N  R  I  V  P  L  L  P  R  V  Y  R  P  P  P  F  S  P  I  S  D  F  P  L  L  N  L  I  N  F  T  V  Q  F  S  S  T  K  P  P  I  K  L  P  I  S  L  I  A  I  Q  T  K  L  Q  Y  F  L  E  K  S  G  N  G  F  F  Q  C  P  L  S  *  D  F  C  P  L  C  C  F  I  I  Q  F  K  L  D  P  S  A  P  E  L  P  F  L  Q  I  R  S  C  I  A  P  S  Y  S   : G  V  Q  S  H  P  I  S  G  V  *  G  E  C  P  A  E  *   : G  C  Y  *  Q  V  E  Q  F  K  T  C  L  *  E  K  L  G  G  S  L  Q  D  *  I  Q  Y  S  R  C  F  I  H  S  S  I  H  V  S  G  S  *  S  C  G  :  A  C  G  F  K  G  H  C  G  A  A  A  K  A  K  Q  L  *  N  S  Y  K  E  E  G  G  I  A  P  A  A  C  L  Y  G  L  T  I  C  S  T  G  L  C  S  A  T  V  A  S  C  K  C  P  C  S  C  S  S  S  S  C  C  T  S  S  T  C  T  F  K  A  *  I  L  T  S  S  N  E  M  S  H  G  R  N  I  L  S  I  T  C  P  R  G  S  T  F  C  *   : G  R  *  Q  G  P  E  R  A  S  G  L  H  Y  *  G  Y  E  I  D  E  *  N  *   : G  *  S  S  W  N  H  S  *  H  S  C  R  G  W  *  A  R  *  C  G  H   : A  S  I  C  H  *  T  M  I  E  R  S  N  L  G  V  Q  H  R  W  M  K  Q  S  E  I  Q  K  L  *  R  A  N  L  S  *  A  Q  G  I  S  A  Q  K  I  G  S  L  L  L  L  L  K  S  M  I  I  F  I  A  C  I  T  H  F  P  Y  A  A  H  K  F  W  N  Y  I  F  F  I  K  L  *  L  D  D  N  L   </second_frame>
            <third_frame>   L  F  H  L  P  L  P  A  *  I  A  S  S  P  F  S  L  V  C  I  A  P  L  P  F  L  Q  F  R  I  F  P  C  *  I  S  S  I  L  P  S  N  S  L  L  Q  N  P  P  S  S  S  Q  F  P  S  *  P  Y  R  Q  N  Y  N  I  F  L  K  N  L  A  M  A  S  F  S  V  P  C  P  K  I  S  V  L  S  V  A  S  S  S  N  L  S  S  T  H  Q  P  Q  S  S  L  S  F  R  S  G  P  A  L  L  P  R  I  Q  :  G  S  S  R  I  Q  S  Q  V  F  K  V  N  A  Q  L  N  E  :  V  A  I  D  K  S  N  N  S  K  P  V  S  E  K  S  L  E  E  V  S  K  T  E  Y  S  I  P  D  A  S  S  I  Q  A  F  M  S  Q  A  A  D  L  V  E :   L  V  D  S  R  D  I  V  E  L  Q  L  K  Q  N  N  C  E  I  L  I  R  K  K  A  A  L  P  Q  P  P  V  Y  M  A  S  P  S  V  P  Q  A  F  V  Q  Q  Q  L  P  P  A  S  A  P  A  P  A  A  P  A  V  A  A  L  P  P  P  A  P  S  K  P  K  S  S  H  P  P  M  K  C  P  M  A  G  T  F  Y  R  S  P  A  P  G  A  A  P  F  V  K  :  V  G  D  K  V  Q  K  G  Q  V  V  C  I  I  E  A  M  K  L  M  N  E  I  E  :  A  D  Q  A  G  T  I  V  D  I  V  A  E  D  G  K  P  V  S  V  D  T  :  P  L  F  V  I  E  P  *  *  K  E  V  I  L  V  C  N  I  G  G  *  S  R  V  K  F  K  S  Y  R  E  Q  I  C  L  K  L  K  A  Y  L  L  R  R  L  V  H  Y  Y  S  C  *  N  L  *  S  Y  L  *  L  V  L  L  I  F  L  M  L  L  I  N  F  G  T  I  F  S  L  *  S  C  D  L  M  I  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56284" stop="56460"/>
                    <exon start="56545" stop="56598"/>
                    <exon start="56836" stop="56969"/>
                    <exon start="57063" stop="57363"/>
                    <exon start="57926" stop="57997"/>
                    <exon start="58378" stop="58443"/>
                    <exon start="58528" stop="58551"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYRQNYNIFLKNLAMASFSVPCPKISVLSVASSSNLSSTHQPQSSLSFRSGPALLPRIQGSSRIQSQVFKVNAQLNEVAIDKSNNSKPVSEKSLEEVSKTEYSIPDASSIQAFMSQAADLVELVDSRDIVELQLKQNNCEILIRKKAALPQPPVYMASPSVPQAFVQQQLPPASAPAPAAPAVAALPPPAPSKPKSSHPPMKCPMAGTFYRSPAPGAAPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQAGTIVDIVAEDGKPVSVDTPLFVIEP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56111" stop="56314"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSICLCQLKSHRPPSPSCVSPPSLFSNFGFSPAKSHQFYRPILFYKTPHQAPNFPHSHTDKITIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="62803" PGL_stop="60038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62803" e_stop="62648"/>
            <exon e_start="62320" e_stop="62220"/>
            <exon e_start="60521" e_stop="60162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62803" e_stop="62648" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.779">
            <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62320" e_stop="62220" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60521" e_stop="60162" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62803" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62803" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62802" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371591" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62802" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62802" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62800" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296287" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62800" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62800" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62800" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62800" stop="62648"/>
              <exon start="62320" stop="62247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62799" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62799" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62798" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62798" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62798" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62796" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62796" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62795" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62795" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62792" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62786" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62742" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62740" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62729" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62713" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285461" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62710" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62316" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62311" stop="62220"/>
              <exon start="60521" stop="60188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62309" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62303" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62271" stop="62220"/>
              <exon start="60521" stop="60195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60521" stop="60203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60520" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60520" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60517" stop="60229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA : TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT : GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</gDNA_template>
            <first_frame> E  T  T  A  A  M  S  S  P  A  N  D  P  R  Q  P  S  T  A  K  P  Y  K  P  S  P  V  A  P  Q  D  L  P  I  D  Y  S  G  F  I  A  V  I  C  G  V  F  G  A  M  F  R  :  Y  K  I  C  S  W  L  A  I  I  F  S  A  Q  S  L  A  N  M  R  N  M  E  N  D  L  K  Q  I  S  M  A  M  M :   F  G  I  M  G  L  M  T  N  Y  L  G  V  G  P  R  G  S  K  K  I  *  S  N  C  F  R  H  K  L  I  Y  K  N  I  A  V  K  H  V  D  V  V  L  K  Y  L  H  C  Y  D  V  S  E  L  N  E  V  K  D  *  V  F  G  S  L  S  S  F  Y  R  A  I  Q  F  *  V  V  I  A  L  S  K  N  *  T  I  I  I  V  V  I  L  T  F  C  S  *  I  Q  V  S  L  S  F  Q  L  P  L  Y  F  N  L  C  L  V  I  *  S   </first_frame>
            <second_frame>  K  L  Q  Q  P  C  R  H  Q  R  T  I  H  G  N  R  R  R  Q  S  R  T  S  L  R  R  S  L  H  K  I  F  L  *  I  T  P  A  S  *  P  S  S  A  A  S  L  V  P  C  L  D :   T  R  F  A  R  G  L  L  L  Y  S  V  L  N  P  L  L  T  *  G  I  W  K  M  I  L  S  R  S  Q  W  P  *   : C  L  V  L  W  V  S  *  Q  T  T  W  V  L  V  P  G  E  A  R  K  F  D  R  I  V  S  G  T  N  S  F  I  R  T  L  L  S  N  M  W  M  L  S  *  N  I  C  T  V  M  M  F  L  S  *  M  K  L  K  I  R  F  L  V  V  *  A  L  F  I  G  L  F  S  S  K  L  *  L  L  L  A  K  T  R  Q  L  L  L  W  *  Y  *  R  S  V  R  E  F  R  F  L  Y  P  S  N  F  H  Y  I  S  I  Y  V  L  L  F  S  L  </second_frame>
            <third_frame>   N  Y  S  S  H  V  V  T  S  E  R  S  T  A  T  V  D  G  K  A  V  Q  A  F  A  G  R  S  T  R  S  S  Y  R  L  L  R  L  H  S  R  H  L  R  R  L  W  C  H  V  *   : I  Q  D  L  L  V  A  C  Y  Y  I  Q  C  S  I  P  C  *  H  E  E  Y  G  K  *  S  *  A  D  L  N  G  H  D  :  V  W  Y  Y  G  S  H  D  K  L  L  G  C  W  S  P  G  K  Q  E  N  L  I  E  L  F  Q  A  Q  T  H  L  *  E  H  C  C  Q  T  C  G  C  C  P  E  I  F  A  L  L  *  C  F  *  A  K  *  S  *  R  L  G  F  W  *  F  E  L  F  L  *  G  Y  S  V  L  S  C  N  C  S  *  Q  K  L  D  N  Y  Y  C  G  D  I  N  V  L  F  V  N  S  G  F  S  I  L  P  T  S  T  I  F  Q  F  M  S  C  Y  L  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62803" stop="62648"/>
                    <exon start="62320" stop="62220"/>
                    <exon start="60521" stop="60455"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETTAAMSSPANDPRQPSTAKPYKPSPVAPQDLPIDYSGFIAVICGVFGAMFRYKICSWLAIIFSAQSLANMRNMENDLKQISMAMMFGIMGLMTNYLGVGPRGSKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62803" e_stop="62648"/>
            <exon e_start="62320" e_stop="62220"/>
            <exon e_start="60521" e_stop="60221"/>
            <exon e_start="60074" e_stop="60038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.622"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62803" e_stop="62648" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.779">
            <gDNA_intron_boundary i_start="62647" i_stop="62321" i_length="327"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62320" e_stop="62220" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60521" e_stop="60221" e_length="301"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60220" i_stop="60075" i_length="146"/>
          </intron>
          <exon e_serial="4" e_score="0.622">
            <gDNA_exon_boundary e_start="60074" e_stop="60038" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62803" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62803" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62802" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62802" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62800" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62800" stop="62648"/>
              <exon start="62320" stop="62247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62799" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62798" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62798" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62798" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62796" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62795" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62795" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62792" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62786" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62742" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62740" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62713" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285461" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62710" stop="62648"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60221"/>
              <exon start="60074" stop="60038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62316" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62309" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62303" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60520" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60520" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60517" stop="60229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACTACAGCAGCCATGTCGTCACCAGCGAACGATCCACGGCAACCGTCGACGGCAAAGCCGTACAAGCCTTCGCCGGTCGCTCCACAAGATCTTCCTATAGATTACTCCGGCTTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCATGTTTAGA : TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT : GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAG : AAAGACTAAGAAAAGGCAAAGAGAACTTTAGAAAAAA</gDNA_template>
            <first_frame> E  T  T  A  A  M  S  S  P  A  N  D  P  R  Q  P  S  T  A  K  P  Y  K  P  S  P  V  A  P  Q  D  L  P  I  D  Y  S  G  F  I  A  V  I  C  G  V  F  G  A  M  F  R  :  Y  K  I  C  S  W  L  A  I  I  F  S  A  Q  S  L  A  N  M  R  N  M  E  N  D  L  K  Q  I  S  M  A  M  M :   F  G  I  M  G  L  M  T  N  Y  L  G  V  G  P  R  G  S  K  K  I  *  S  N  C  F  R  H  K  L  I  Y  K  N  I  A  V  K  H  V  D  V  V  L  K  Y  L  H  C  Y  D  V  S  E  L  N  E  V  K  D  *  V  F  G  S  L  S  S  F  Y  R  A  I  Q  F  *  V  V  I  A  L  S  K  N  *  T  I  I  I  V  V  I  L  T  F  C  S  *  I  Q  :  K  D  *  E  K  A  K  R  T  L  E  K  </first_frame>
            <second_frame>  K  L  Q  Q  P  C  R  H  Q  R  T  I  H  G  N  R  R  R  Q  S  R  T  S  L  R  R  S  L  H  K  I  F  L  *  I  T  P  A  S  *  P  S  S  A  A  S  L  V  P  C  L  D :   T  R  F  A  R  G  L  L  L  Y  S  V  L  N  P  L  L  T  *  G  I  W  K  M  I  L  S  R  S  Q  W  P  *   : C  L  V  L  W  V  S  *  Q  T  T  W  V  L  V  P  G  E  A  R  K  F  D  R  I  V  S  G  T  N  S  F  I  R  T  L  L  S  N  M  W  M  L  S  *  N  I  C  T  V  M  M  F  L  S  *  M  K  L  K  I  R  F  L  V  V  *  A  L  F  I  G  L  F  S  S  K  L  *  L  L  L  A  K  T  R  Q  L  L  L  W  *  Y  *  R  S  V  R  E  F  R :   K  T  K  K  R  Q  R  E  L  *  K  K </second_frame>
            <third_frame>   N  Y  S  S  H  V  V  T  S  E  R  S  T  A  T  V  D  G  K  A  V  Q  A  F  A  G  R  S  T  R  S  S  Y  R  L  L  R  L  H  S  R  H  L  R  R  L  W  C  H  V  *   : I  Q  D  L  L  V  A  C  Y  Y  I  Q  C  S  I  P  C  *  H  E  E  Y  G  K  *  S  *  A  D  L  N  G  H  D  :  V  W  Y  Y  G  S  H  D  K  L  L  G  C  W  S  P  G  K  Q  E  N  L  I  E  L  F  Q  A  Q  T  H  L  *  E  H  C  C  Q  T  C  G  C  C  P  E  I  F  A  L  L  *  C  F  *  A  K  *  S  *  R  L  G  F  W  *  F  E  L  F  L  *  G  Y  S  V  L  S  C  N  C  S  *  Q  K  L  D  N  Y  Y  C  G  D  I  N  V  L  F  V  N  S   : E  R  L  R  K  G  K  E  N  F  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62803" stop="62648"/>
                    <exon start="62320" stop="62220"/>
                    <exon start="60521" stop="60455"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETTAAMSSPANDPRQPSTAKPYKPSPVAPQDLPIDYSGFIAVICGVFGAMFRYKICSWLAIIFSAQSLANMRNMENDLKQISMAMMFGIMGLMTNYLGVGPRGSKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62689" e_stop="62655"/>
            <exon e_start="62522" e_stop="62514"/>
            <exon e_start="62320" e_stop="62220"/>
            <exon e_start="60521" e_stop="60162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.456" acc_prob="0.324" e_score="0.914"/>
          <exon-intron don_prob="0.900" acc_prob="0.779" e_score="0.333"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="62689" e_stop="62655" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.456" acc_prob="0.324">
            <gDNA_intron_boundary i_start="62654" i_stop="62523" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="0.333">
            <gDNA_exon_boundary e_start="62522" e_stop="62514" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.779">
            <gDNA_intron_boundary i_start="62513" i_stop="62321" i_length="193"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62320" e_stop="62220" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62219" i_stop="60522" i_length="1698"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="60521" e_stop="60162" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62689" stop="62655"/>
              <exon start="62522" stop="62514"/>
              <exon start="62320" stop="62220"/>
              <exon start="60521" stop="60162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62316" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62311" stop="62220"/>
              <exon start="60521" stop="60188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62309" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62303" stop="62220"/>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62271" stop="62220"/>
              <exon start="60521" stop="60195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60521" stop="60203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60521" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60520" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60520" stop="60221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60517" stop="60229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATAGCCGTCATCTGCGGCGTCTTTGGTGCCAT : AACGAAGGA : TACAAGATTTGCTCGTGGCTTGCTATTATATTCAGTGCTCAATCCCTTGCTAACATGAGGAATATGGAAAATGATCTTAAGCAGATCTCAATGGCCATGAT : GTTTGGTATTATGGGTCTCATGACAAACTACTTGGGTGTTGGTCCCCGGGGAAGCAAGAAAATTTGATCGAATTGTTTCAGGCACAAACTCATTTATAAGAACATTGCTGTCAAACATGTGGATGTTGTCCTGAAATATTTGCACTGTTATGATGTTTCTGAGCTAAATGAAGTTAAAGATTAGGTTTTTGGTAGTTTGAGCTCTTTTTATAGGGCTATTCAGTTCTAAGTTGTAATTGCTCTTAGCAAAAACTAGACAATTATTATTGTGGTGATATTAACGTTCTGTTCGTGAATTCAGGTTTCTCTATCCTTCCAACTTCCACTATATTTCAATTTATGTCTTGTTATTTAGTCTTA</gDNA_template>
            <first_frame> F  I  A  V  I  C  G  V  F  G  A  I :   T  K  D :   T  R  F  A  R  G  L  L  L  Y  S  V  L  N  P  L  L  T  *  G  I  W  K  M  I  L  S  R  S  Q  W  P  *   : C  L  V  L  W  V  S  *  Q  T  T  W  V  L  V  P  G  E  A  R  K  F  D  R  I  V  S  G  T  N  S  F  I  R  T  L  L  S  N  M  W  M  L  S  *  N  I  C  T  V  M  M  F  L  S  *  M  K  L  K  I  R  F  L  V  V  *  A  L  F  I  G  L  F  S  S  K  L  *  L  L  L  A  K  T  R  Q  L  L  L  W  *  Y  *  R  S  V  R  E  F  R  F  L  Y  P  S  N  F  H  Y  I  S  I  Y  V  L  L  F  S  L  </first_frame>
            <second_frame>  S  *  P  S  S  A  A  S  L  V  P   : *  R  R   : I  Q  D  L  L  V  A  C  Y  Y  I  Q  C  S  I  P  C  *  H  E  E  Y  G  K  *  S  *  A  D  L  N  G  H  D  :  V  W  Y  Y  G  S  H  D  K  L  L  G  C  W  S  P  G  K  Q  E  N  L  I  E  L  F  Q  A  Q  T  H  L  *  E  H  C  C  Q  T  C  G  C  C  P  E  I  F  A  L  L  *  C  F  *  A  K  *  S  *  R  L  G  F  W  *  F  E  L  F  L  *  G  Y  S  V  L  S  C  N  C  S  *  Q  K  L  D  N  Y  Y  C  G  D  I  N  V  L  F  V  N  S  G  F  S  I  L  P  T  S  T  I  F  Q  F  M  S  C  Y  L  V  L </second_frame>
            <third_frame>   H  S  R  H  L  R  R  L  W  C  H  :  N  E  G  :  Y  K  I  C  S  W  L  A  I  I  F  S  A  Q  S  L  A  N  M  R  N  M  E  N  D  L  K  Q  I  S  M  A  M  M :   F  G  I  M  G  L  M  T  N  Y  L  G  V  G  P  R  G  S  K  K  I  *  S  N  C  F  R  H  K  L  I  Y  K  N  I  A  V  K  H  V  D  V  V  L  K  Y  L  H  C  Y  D  V  S  E  L  N  E  V  K  D  *  V  F  G  S  L  S  S  F  Y  R  A  I  Q  F  *  V  V  I  A  L  S  K  N  *  T  I  I  I  V  V  I  L  T  F  C  S  *  I  Q  V  S  L  S  F  Q  L  P  L  Y  F  N  L  C  L  V  I  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62687" stop="62655"/>
                    <exon start="62522" stop="62514"/>
                    <exon start="62320" stop="62220"/>
                    <exon start="60521" stop="60455"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSRHLRRLWCHNEGYKICSWLAIIFSAQSLANMRNMENDLKQISMAMMFGIMGLMTNYLGVGPRGSKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="75110" PGL_stop="71191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75110" e_stop="75082"/>
            <exon e_start="75001" e_stop="74754"/>
            <exon e_start="74666" e_stop="74559"/>
            <exon e_start="71747" e_stop="71191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.979" acc_prob="0.992" e_score="0.992"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="75110" e_stop="75082" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75081" i_stop="75002" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="75001" e_stop="74754" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.992">
            <gDNA_intron_boundary i_start="74753" i_stop="74667" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="74666" e_stop="74559" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74558" i_stop="71748" i_length="2811"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="71747" e_stop="71191" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75110" stop="75082"/>
              <exon start="75001" stop="74754"/>
              <exon start="74666" stop="74559"/>
              <exon start="71747" stop="71524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74786" stop="74754"/>
              <exon start="74666" stop="74559"/>
              <exon start="71747" stop="71191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGAGCTGCTAATAGGCTTACTGAAAAG : GTTATAGAAGGCATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGCAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACT : GCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAG : ACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATCAATTACCTCAACTTCCCGTAGACATTTTTGTCCTAGTCATGTACTAGTTCTAGCAAGAGCAAAATAGAACCACACAATCAGTATTGCTGAACATACTCAATTGTCATCTCAGATGGAACGTAGCTGTCCAATCTTTTGCATGTAGGCCATTTATGTCATTATCAAGAAAATATACATGTACATCTCTTCAAACTTAGTGAGGGGAGGTGAAACTAGGGTGCCCCATCATTTTTTGCCAGAAGTGGGGAGAGAATACATACTTCTGTGCTTCTAAGCTGTTGACATACAGTTGGCCATCATTATGTATAAGAGATGCCCAGGCGCTCATAATTG</gDNA_template>
            <first_frame> L  E  L  L  I  G  L  L  K  R :   L  *  K  A  L  V  L  M  R  K  G  P  Q  G  L  K  L  K  E  G  L  Y  *  P  L  S  L  C  S  N  Y  S  P  L  P  L  Q  Q  F  F  L  Q  K  L  I  Q  S  M  R  V  W  V  T  P  S  L  D  R  H  W  G  M  H  A  A  C  F  L  A  Q  M  L  I  V  I  C  L  V  M  T  K  N   : C  F  P  K  G  A  L  L  L  R  G  L  I  N  M  I  L  P  K  H  *  K  S  Y  R  E  E  R  G  D  W  K  V  I  L  *   : D  W  T  R  E  H  R  Y  *  M  *  Q  W  M  G  K  T  K  R  S  S  A  L  L  I  G  M  L  G  F  L  V  G  R  N  M  M  V  F  L  R  D  T  S  Q  R  F  Q  Y  Q  K  I  C  L  V  G  C  T  V  F  L  Y  N  H  K  S  I  E  S  F  L  C  S  V  I  N  Y  L  N  F  P  *  T  F  L  S  *  S  C  T  S  S  S  K  S  K  I  E  P  H  N  Q  Y  C  *  T  Y  S  I  V  I  S  D  G  T  *  L  S  N  L  L  H  V  G  H  L  C  H  Y  Q  E  N  I  H  V  H  L  F  K  L  S  E  G  R  *  N  *  G  A  P  S  F  F  A  R  S  G  E  R  I  H  T  S  V  L  L  S  C  *  H  T  V  G  H  H  Y  V  *  E  M  P  R  R  S  *  L </first_frame>
            <second_frame>  *  S  C  *  *  A  Y  *  K   : G  Y  R  R  H  W  F  *  *  G  R  G  P  R  G  *  S  *  K  K  G  Y  I  D  H  S  A  Y  A  A  T  T  P  L  S  P  C  S  N  S  F  C  R  S  *  F  R  V  *  E  C  G  L  L  H  L  *  I  V  I  G  G  C  M  Q  H  A  F  L  L  K  C  *  S  *  Y  A  L  *  *  Q  R  T  :  A  S  Q  R  V  H  Y  F  S  E  D  *  *  T  *  F  C  Q  N  I  R  R  V  T  G  K  S  E  E  I  G  K  *  F  Y  E  :  T  G  Q  E  S  I  G  I  R  C  D  S  G  W  A  R  P  R  E  V  R  R  Y  *  S  V  C  *  V  S  W  S  G  A  I  *  W  Y  S  S  E  I  R  H  S  A  S  N  T  K  R  S  A  *  W  G  A  L  S  F  S  I  I  T  N  Q  L  N  L  F  C  A  L  S  S  I  T  S  T  S  R  R  H  F  C  P  S  H  V  L  V  L  A  R  A  K  *  N  H  T  I  S  I  A  E  H  T  Q  L  S  S  Q  M  E  R  S  C  P  I  F  C  M  *  A  I  Y  V  I  I  K  K  I  Y  M  Y  I  S  S  N  L  V  R  G  G  E  T  R  V  P  H  H  F  L  P  E  V  G  R  E  Y  I  L  L  C  F  *  A  V  D  I  Q  L  A  I  I  M  Y  K  R  C  P  G  A  H  N   </second_frame>
            <third_frame>   R  A  A  N  R  L  T  E  K  :  V  I  E  G  I  G  F  N  E  E  G  A  P  G  V  K  A  K  R  R  A  I  L  T  T  Q  L  M  Q  Q  L  L  P  S  P  P  A  A  I  L  S  A  E  A  N  S  E  Y  E  S  V  G  Y  S  I  S  R  S  S  L  G  D  A  C  S  M  L  S  C  S  N  A  D  R  N  M  P  C  D  D  K  E  L :   L  P  K  G  C  I  T  S  Q  R  I  N  K  H  D  F  A  K  T  L  E  E  L  Q  G  R  A  R  R  L  E  S  D  F  M  R :   L  D  K  R  A  S  V  L  D  V  T  V  D  G  Q  D  Q  E  K  F  G  V  I  N  R  Y  A  R  F  L  G  R  A  Q  Y  D  G  I  P  Q  R  Y  V  T  A  L  P  I  P  K  D  L  P  S  G  V  H  C  L  S  L  *  S  Q  I  N  *  I  F  S  V  L  C  H  Q  L  P  Q  L  P  V  D  I  F  V  L  V  M  Y  *  F  *  Q  E  Q  N  R  T  T  Q  S  V  L  L  N  I  L  N  C  H  L  R  W  N  V  A  V  Q  S  F  A  C  R  P  F  M  S  L  S  R  K  Y  T  C  T  S  L  Q  T  *  *  G  E  V  K  L  G  C  P  I  I  F  C  Q  K  W  G  E  N  T  Y  F  C  A  S  K  L  L  T  Y  S  W  P  S  L  C  I  R  D  A  Q  A  L  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75108" stop="75082"/>
                    <exon start="75001" stop="74754"/>
                    <exon start="74666" stop="74559"/>
                    <exon start="71747" stop="71561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAANRLTEKVIEGIGFNEEGAPGVKAKRRAILTTQLMQQLLPSPPAAILSAEANSEYESVGYSISRSSLGDACSMLSCSNADRNMPCDDKELLPKGCITSQRINKHDFAKTLEELQGRARRLESDFMRLDKRASVLDVTVDGQDQEKFGVINRYARFLGRAQYDGIPQRYVTALPIPKDLPSGVHCLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="77442" PGL_stop="75747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77442" e_stop="77403"/>
            <exon e_start="77201" e_stop="75747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.996" e_score="0.950"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="77442" e_stop="77403" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77402" i_stop="77202" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="77201" e_stop="75747" e_length="1455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77442" stop="77403"/>
              <exon start="77201" stop="76357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76802" stop="76165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76465" stop="75747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76465" stop="75983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTGACTCACATTCACCTAATAAAGCTGCGGAATCTAG : TCCAAACATGCTACAGCTTATTCAGAAGGTGGACCAGTCGAGAGAGTGTGGTTCCGGGGCAGAGTTAGGTCATTCTGAAAAAAAAGCATCATCTAGGATGCCTGAAGCAGCAGAGAATTCTGATGAGTCTGTTGGTCATCACCTGAGGAGTCAGTCTGCTTTCTCTCAAGGCTATGGTCTACAACTTGGCCCTCCATCCCGACGTGCATCAGTCCGAACCCATTCTTTGACATCTCAGCGCCCGATCCAAGCTTTTAGCTCTTCACATTATAGTCATGCTACTGTTGACACTGGTGAGAAGAATCAAGGACCAATGCACCCCCCTCATCAGGCTCCATCCGTACTTTCACCTTCTGATCCATCCCAGGAAGGATTGAAGAATATAGGATTTGGTATTGCAGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTGAAGCCCAACCTTTCAAATCAGAACTATTCCCTATTAAACCAAGTGCAGGCTATCAAACATGTGGAGGTCGATCCAAGCAATAGGGACTTCAAGAGAATGAAAGTAGCAGACAGCAGTACAGGTGCTCCACAATTTTCTTCTGGGGACACTGAAATGTTGGGAGTCTCTGTGCCAGAGGATTTGCAAAGAAGCATTTCATCTCAACAAGGGAGAAAAATGTCTCCTCATGATGTACT</gDNA_template>
            <first_frame> L  L  T  H  I  H  L  I  K  L  R  N  L   : V  Q  T  C  Y  S  L  F  R  R  W  T  S  R  E  S  V  V  P  G  Q  S  *  V  I  L  K  K  K  H  H  L  G  C  L  K  Q  Q  R  I  L  M  S  L  L  V  I  T  *  G  V  S  L  L  S  L  K  A  M  V  Y  N  L  A  L  H  P  D  V  H  Q  S  E  P  I  L  *  H  L  S  A  R  S  K  L  L  A  L  H  I  I  V  M  L  L  L  T  L  V  R  R  I  K  D  Q  C  T  P  L  I  R  L  H  P  Y  F  H  L  L  I  H  P  R  K  D  *  R  I  *  D  L  V  L  Q  E  V  P  I  M  *  L  L  C  M  Q  C  P  E  T  F  L  Q  R  L  I  L  I  L  V  F  P  I  G  E  V  S  L  K  F  Q  M  W  L  G  L  L  H  N  S  Q  Q  I  N  P  *  V  Y  P  L  I  S  M  L  P  L  I  Q  R  K  V  T  L  A  E  D  L  Q  M  V  S  L  W  R  L  P  C  W  L  G  L  T  S  C  K  I  S  L  F  S  P  Q  T  S  L  N  *  V  T  P  I  V  Q  W  K  V  S  L  P  I  K  L  H  P  K  S  Q  Y  Q  F  L  R  R  *  C  L  A  S  V  S  R  V  R  I  Q  K  C  H  P  V  Y  G  V  L  F  H  H  L  S  K  L  L  A  L  S  I  A  R  I  L  L  I  F  S  N  H  I  K  *  I  L  W  S  R  H  Y  L  L  L  G  G  K  V  I  N  T  *  I  E  V  V  L  H  P  R  L  V  L  A  Q  *  I  P  W  F  L  L  K  G  K  N  S  D  Q  R  K  V  I  L  S  K  Y  Q  *  Q  M  L  T  T  S  R  R  *  M  I  H  R  V  E  N  L  L  S  S  I  S  W  E  D  L  L  Q  M  L  H  L  C  R  E  I  L  K  P  L  A  E  L  *  S  P  T  F  Q  I  R  T  I  P  Y  *  T  K  C  R  L  S  N  M  W  R  S  I  Q  A  I  G  T  S  R  E  *  K  *  Q  T  A  V  Q  V  L  H  N  F  L  L  G  T  L  K  C  W  E  S  L  C  Q  R  I  C  K  E  A  F  H  L  N  K  G  E  K  C  L  L  M  M  Y  </first_frame>
            <second_frame>  S  *  L  T  F  T  *  *  S  C  G  I  *  :  S  K  H  A  T  A  Y  S  E  G  G  P  V  E  R  V  W  F  R  G  R  V  R  S  F  *  K  K  S  I  I  *  D  A  *  S  S  R  E  F  *  *  V  C  W  S  S  P  E  E  S  V  C  F  L  S  R  L  W  S  T  T  W  P  S  I  P  T  C  I  S  P  N  P  F  F  D  I  S  A  P  D  P  S  F  *  L  F  T  L  *  S  C  Y  C  *  H  W  *  E  E  S  R  T  N  A  P  P  S  S  G  S  I  R  T  F  T  F  *  S  I  P  G  R  I  E  E  Y  R  I  W  Y  C  R  K  Y  Q  *  C  N  F  Y  V  C  N  A  R  K  P  F  S  S  V  *  F  S  F  W  F  S  L  *  G  R  S  A  *  N  S  K  C  G  *  D  Y  C  T  T  P  N  K  S  I  L  E  C  I  L  *  *  A  C  F  L  S  Y  R  E  R  *  L  L  Q  R  I  C  K  W  S  V  C  G  G  F  L  A  G  W  G  *  Q  V  A  R  *  A  Y  S  L  R  R  Q  V  S  I  E  *  H  Q  S  Y  S  G  K  Y  L  Y  Q  S  S  Y  I  P  R  A  S  I  S  F  S  G  V  S  V  W  H  R  S  A  G  Y  V  F  K  N  V  I  R  Y  M  G  Y  F  S  T  T  S  A  S  F  W  L  S  V  *  Q  G  F  F  S  Y  F  P  I  T  S  N  E  Y  C  G  V  V  I  I  C  S  W  E  A  K  *  S  I  L  E  *  R  *  F  C  I  P  D  W  Y  *  L  S  E  F  P  G  F  F  *  R  G  R  T  A  T  K  G  K  S  F  S  A  N  I  S  D  K  C  *  P  H  P  E  D  E  *  F  T  G  *  R  T  F  Y  Q  V  Y  L  G  R  I  C  C  K  C  C  I  Y  A  E  R  Y  *  S  L  W  P  N  F  E  A  Q  P  F  K  S  E  L  F  P  I  K  P  S  A  G  Y  Q  T  C  G  G  R  S  K  Q  *  G  L  Q  E  N  E  S  S  R  Q  Q  Y  R  C  S  T  I  F  F  W  G  H  *  N  V  G  S  L  C  A  R  G  F  A  K  K  H  F  I  S  T  R  E  K  N  V  S  S  *  C  T </second_frame>
            <third_frame>   L  D  S  H  S  P  N  K  A  A  E  S  S :   P  N  M  L  Q  L  I  Q  K  V  D  Q  S  R  E  C  G  S  G  A  E  L  G  H  S  E  K  K  A  S  S  R  M  P  E  A  A  E  N  S  D  E  S  V  G  H  H  L  R  S  Q  S  A  F  S  Q  G  Y  G  L  Q  L  G  P  P  S  R  R  A  S  V  R  T  H  S  L  T  S  Q  R  P  I  Q  A  F  S  S  S  H  Y  S  H  A  T  V  D  T  G  E  K  N  Q  G  P  M  H  P  P  H  Q  A  P  S  V  L  S  P  S  D  P  S  Q  E  G  L  K  N  I  G  F  G  I  A  G  S  T  N  N  V  T  S  M  Y  A  M  P  G  N  L  S  P  A  F  D  S  H  S  G  F  P  Y  R  G  G  Q  L  K  I  P  N  V  A  R  T  T  A  Q  L  P  T  N  Q  S  L  S  V  S  F  D  K  H  A  S  S  H  T  E  K  G  D  S  C  R  G  S  A  N  G  Q  S  V  E  A  S  L  L  A  G  A  D  K  L  Q  D  K  P  I  L  S  A  D  K  S  Q  L  S  N  T  N  R  T  V  E  S  I  F  T  N  Q  V  T  S  Q  E  P  V  S  V  S  Q  A  L  V  S  G  I  G  Q  Q  G  T  Y  S  K  M  S  S  G  I  W  G  T  F  P  P  P  Q  Q  A  F  G  S  Q  Y  S  K  D  S  S  H  I  F  Q  S  H  Q  M  N  I  V  E  S  S  L  S  A  P  G  R  Q  S  D  Q  Y  L  N  R  G  S  F  A  S  Q  I  G  T  S  S  V  N  S  L  V  S  S  E  G  E  E  Q  R  P  K  E  S  H  S  Q  Q  I  S  V  T  N  V  D  H  I  Q  K  M  N  D  S  Q  G  R  E  P  F  I  K  Y  I  L  G  G  S  A  A  N  A  A  S  M  Q  R  D  I  E  A  F  G  R  T  L  K  P  N  L  S  N  Q  N  Y  S  L  L  N  Q  V  Q  A  I  K  H  V  E  V  D  P  S  N  R  D  F  K  R  M  K  V  A  D  S  S  T  G  A  P  Q  F  S  S  G  D  T  E  M  L  G  V  S  V  P  E  D  L  Q  R  S  I  S  S  Q  Q  G  R  K  M  S  P  H  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77440" stop="77403"/>
                    <exon start="77201" stop="75749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1491</number_coding_nucleotides>
                  <number_encoded_amino_acids>497</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDSHSPNKAAESSPNMLQLIQKVDQSRECGSGAELGHSEKKASSRMPEAAENSDESVGHHLRSQSAFSQGYGLQLGPPSRRASVRTHSLTSQRPIQAFSSSHYSHATVDTGEKNQGPMHPPHQAPSVLSPSDPSQEGLKNIGFGIAGSTNNVTSMYAMPGNLSPAFDSHSGFPYRGGQLKIPNVARTTAQLPTNQSLSVSFDKHASSHTEKGDSCRGSANGQSVEASLLAGADKLQDKPILSADKSQLSNTNRTVESIFTNQVTSQEPVSVSQALVSGIGQQGTYSKMSSGIWGTFPPPQQAFGSQYSKDSSHIFQSHQMNIVESSLSAPGRQSDQYLNRGSFASQIGTSSVNSLVSSEGEEQRPKESHSQQISVTNVDHIQKMNDSQGREPFIKYILGGSAANAASMQRDIEAFGRTLKPNLSNQNYSLLNQVQAIKHVEVDPSNRDFKRMKVADSSTGAPQFSSGDTEMLGVSVPEDLQRSISSQQGRKMSPHDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="93134" PGL_stop="97496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93134" e_stop="93570"/>
            <exon e_start="94985" e_stop="95176"/>
            <exon e_start="96591" e_stop="96750"/>
            <exon e_start="96850" e_stop="96952"/>
            <exon e_start="97047" e_stop="97128"/>
            <exon e_start="97202" e_stop="97478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.739" acc_prob="0.604" e_score="0.998"/>
          <exon-intron don_prob="0.960" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.438" e_score="1.000"/>
          <exon-intron don_prob="0.088" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="93134" e_stop="93570" e_length="437"/>
          </exon>
          <intron i_serial="1" don_prob="0.739" acc_prob="0.604">
            <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94985" e_stop="95176" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.937">
            <gDNA_intron_boundary i_start="95177" i_stop="96590" i_length="1414"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96591" e_stop="96750" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.899" acc_prob="0.438">
            <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96850" e_stop="96952" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.088" acc_prob="0.695">
            <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97047" e_stop="97128" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.926" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97129" i_stop="97201" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97202" e_stop="97478" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93134" stop="93570"/>
              <exon start="94985" stop="95087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93167" stop="93570"/>
              <exon start="94985" stop="95073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93170" stop="93570"/>
              <exon start="94985" stop="95171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93186" stop="93570"/>
              <exon start="94985" stop="95137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93221" stop="93570"/>
              <exon start="94985" stop="95176"/>
              <exon start="96591" stop="96750"/>
              <exon start="96850" stop="96952"/>
              <exon start="97047" stop="97100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93264" stop="93570"/>
              <exon start="94985" stop="95176"/>
              <exon start="96591" stop="96725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93264" stop="93473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93272" stop="93570"/>
              <exon start="94985" stop="95169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93539" stop="93570"/>
              <exon start="94985" stop="95176"/>
              <exon start="96591" stop="96750"/>
              <exon start="96850" stop="96952"/>
              <exon start="97047" stop="97128"/>
              <exon start="97202" stop="97284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93539" stop="93570"/>
              <exon start="94985" stop="95176"/>
              <exon start="96591" stop="96750"/>
              <exon start="96850" stop="96952"/>
              <exon start="97047" stop="97117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95088" stop="95176"/>
              <exon start="96591" stop="96750"/>
              <exon start="96850" stop="96952"/>
              <exon start="97047" stop="97128"/>
              <exon start="97202" stop="97384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96687" stop="96750"/>
              <exon start="96850" stop="96952"/>
              <exon start="97047" stop="97128"/>
              <exon start="97202" stop="97478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275577" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAACTTCTCCTTCGAAGTTCGATCTACCCTCCTCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG : GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG : GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC : CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG : GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG : GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGA</gDNA_template>
            <first_frame> A  T  S  P  S  K  F  D  L  P  S  S  D  C  F  H  F  T  S  D  L  G  F  R  *  S  H  P  Q  V  F  N  A  F  D  F  L  F  C  E  E  *  Q  I  L  V  E  H  F  P  L  L  K  L  H  L  P  P  K  Q  V  R  P  E  P  E  P  E  L  P  V  E  M  T  S  Y  S  G  C  P  A  Q  Q  L  R  A  M  G  S  G  T  M  *  Y  W  Y  Y  H  R  F  C  S  Y  C  T  *  G  F  M  L  G  A  T  L  R  S  S  V  I  V  G  L  L  *  *  L  D  T  M  D  F  C  G  L  L  F  F  *  T  F  V  G  A  F  F  R :   H  G  S  A  L  Q  G  S  R  W  L  G  I  F  Y  R  C  L  Q  R  L  Q  C  Y  F  W  R  L  A  *  W  H  S  Y  L  R  R  I  M  R  A  V  W  K  L  Y  H  V  L  S  W  F  Q  A  F  L  L  A  W  I  Y  Y  *  R :   Q  F  I  Y  L  D  L  V  F  H  F  S  L  T  W  K  *  L  I  G  G  S  G  V  S  G  A  P  T  S  F  F  L  L  Q  L  M  A  T  Y  C  L  C  I  S  Q  S  G  E  I  S  C  L  :  H  V  Q  P  F  T  I  T  S  S  S  C  L  *  Q  V  L  *  C  Y  L  P  V  G  L  Q  A  L  G  V  A  L  D  F   : G  C  I  I  *  L  *  F  V  I  T  R  F  I  F  H  F  F  T  *  R  S  W  L  I  F  S  R :   R  K  I  G  F  W  T  A  H  I  T  Q  R  *  K  M  Q  G  F  L  M  Q  T  G  S  K  L  V  K  L  *  T  N  K  Q  S  Q  H  V  I  V  N  I  D  W  L  V  L  *  E  T  K  L  I  V  I  Q  V  I  A  L  S  S  L  F  A  G  *  D  H  *  S  T  W  Q  K  Y  K  K  E  Q  L  K  C  Y  C  K  D  M  Y  F  * </first_frame>
            <second_frame>  Q  L  L  L  R  S  S  I  Y  P  P  P  I  A  S  I  S  R  R  T  *  G  S  D  D  L  I  H  K  F  S  M  P  L  I  F  Y  S  A  K  N  D  K  F  *  W  S  I  F  H  Y  *  S  F  I  S  H  R  S  R  S  G  P  N  R  N  R  N  C  R  *  R  *  L  H  I  P  V  V  Q  L  S  N  C  V  P  W  V  L  A  R  C  D  T  G  I  T  I  G  F  V  R  T  V  L  R  V  S  C  *  E  Q  H  *  E  A  Q  S  S  S  V  F  C  N  D  W  I  L  W  T  F  V  V  C  C  S  F  K  P  L  L  V  L  S  S   : G  M  A  V  H  S  R  E  A  G  G  L  E  S  F  I  V  V  C  N  V  C  N  A  I  S  G  D  *  H  S  G  I  L  T  *  G  E  L  C  E  L  F  G  N  F  I  T  Y  F  H  G  F  R  P  F  C  W  R  G  F  T  I  K   : G  N  L  Y  I  W  T  W  Y  S  T  F  P  *  H  G  N  S  *  *  G  E  V  A  C  L  E  H  Q  Q  A  S  S  Y  C  S  L  W  L  H  I  V  C  A  F  L  K  V  E  R  *  A  A  S :   T  S  S  L  L  Q  L  R  H  R  H  V  C  D  K  C  C  N  V  I  C  L  W  A  C  R  H  *  G  W  L  W  T  L  :  V  V  *  F  D  C  S  L  L  S  L  A  L  S  S  I  S  L  R  D  V  P  G  *  F  F  Q   : G  G  R  L  A  S  G  Q  R  I  L  L  R  D  E  R  C  R  V  F  *  C  R  R  G  V  S  L  *  N  C  R  Q  I  S  S  P  N  M  *  L  *  I  L  T  G  W  Y  Y  E  K  Q  N  *  *  L  F  K  *  L  H  C  L  A  Y  L  L  V  E  I  I  D  P  L  G  K  S  I  R  K  N  N  *  N  V  I  V  K  I  C  I  F   </second_frame>
            <third_frame>   N  F  S  F  E  V  R  S  T  L  L  R  L  L  P  F  H  V  G  P  R  V  P  M  I  S  S  T  S  F  Q  C  L  *  F  S  I  L  R  R  M  T  N  F  S  G  A  F  S  I  T  E  A  S  S  P  T  E  A  G  P  A  R  T  G  T  G  T  A  G  R  D  D  F  I  F  R  L  S  S  S  A  T  A  C  H  G  F  W  H  D  V  I  L  V  L  P  S  V  L  F  V  L  Y  L  G  F  H  A  R  S  N  I  K  K  L  S  H  R  R  S  F  V  M  I  G  Y  Y  G  L  L  W  F  A  V  L  L  N  L  C  W  C  F  L  Q  :  A  W  Q  C  T  P  G  K  Q  V  A  W  N  L  L  S  L  F  A  T  S  A  M  L  F  L  E  I  S  I  V  A  F  L  L  K  E  N  Y  A  S  C  L  E  T  L  S  R  T  F  M  V  S  G  L  F  V  G  V  D  L  L  L  K  :  A  I  Y  I  F  G  L  G  I  P  L  F  L  D  M  E  I  A  D  R  G  K  W  R  V  W  S  T  N  K  L  L  L  T  A  A  Y  G  Y  I  L  F  V  H  F  S  K  W  R  D  K  L  P   : P  R  P  A  F  Y  N  Y  V  I  V  M  F  V  T  S  A  V  M  L  F  A  C  G  L  A  G  I  R  G  G  F  G  L  W :   L  Y  N  L  T  V  V  C  Y  H  S  L  Y  L  P  F  L  Y  V  T  F  L  A  D  F  F  K  :  E  E  D  W  L  L  D  S  A  Y  Y  S  E  M  K  D  A  G  F  F  D  A  D  G  E  *  A  C  K  T  V  D  K  *  A  V  P  T  C  N  C  K  Y  *  L  A  G  I  M  R  N  K  T  N  S  Y  S  S  D  C  I  V  *  L  I  C  W  L  R  S  L  I  H  L  A  K  V  *  E  R  T  T  K  M  L  L  *  R  Y  V  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93238" stop="93570"/>
                    <exon start="94985" stop="95176"/>
                    <exon start="96591" stop="96750"/>
                    <exon start="96850" stop="96952"/>
                    <exon start="97047" stop="97128"/>
                    <exon start="97202" stop="97279"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSILRRMTNFSGAFSITEASSPTEAGPARTGTGTAGRDDFIFRLSSSATACHGFWHDVILVLPSVLFVLYLGFHARSNIKKLSHRRSFVMIGYYGLLWFAVLLNLCWCFLQAWQCTPGKQVAWNLLSLFATSAMLFLEISIVAFLLKENYASCLETLSRTFMVSGLFVGVDLLLKAIYIFGLGIPLFLDMEIADRGKWRVWSTNKLLLTAAYGYILFVHFSKWRDKLPPRPAFYNYVIVMFVTSAVMLFACGLAGIRGGFGLWLYNLTVVCYHSLYLPFLYVTFLADFFKEEDWLLDSAYYSEMKDAGFFDADGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96501" e_stop="96506"/>
            <exon e_start="96591" e_stop="96750"/>
            <exon e_start="96850" e_stop="96952"/>
            <exon e_start="97047" e_stop="97128"/>
            <exon e_start="97202" e_stop="97496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.742" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.438" e_score="0.994"/>
          <exon-intron don_prob="0.088" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96501" e_stop="96506" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.742" acc_prob="0.937">
            <gDNA_intron_boundary i_start="96507" i_stop="96590" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="96591" e_stop="96750" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.438">
            <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96850" e_stop="96952" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.088" acc_prob="0.695">
            <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97047" e_stop="97128" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97129" i_stop="97201" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97202" e_stop="97496" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96501" stop="96506"/>
              <exon start="96591" stop="96750"/>
              <exon start="96850" stop="96952"/>
              <exon start="97047" stop="97128"/>
              <exon start="97202" stop="97496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96687" stop="96750"/>
              <exon start="96850" stop="96952"/>
              <exon start="97047" stop="97128"/>
              <exon start="97202" stop="97478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275577" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAGG : GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC : CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG : GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG : GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGAATAGACCATGCTGGCTAA</gDNA_template>
            <first_frame> *  R  :  A  I  Y  I  F  G  L  G  I  P  L  F  L  D  M  E  I  A  D  R  G  K  W  R  V  W  S  T  N  K  L  L  L  T  A  A  Y  G  Y  I  L  F  V  H  F  S  K  W  R  D  K  L  P   : P  R  P  A  F  Y  N  Y  V  I  V  M  F  V  T  S  A  V  M  L  F  A  C  G  L  A  G  I  R  G  G  F  G  L  W :   L  Y  N  L  T  V  V  C  Y  H  S  L  Y  L  P  F  L  Y  V  T  F  L  A  D  F  F  K  :  E  E  D  W  L  L  D  S  A  Y  Y  S  E  M  K  D  A  G  F  F  D  A  D  G  E  *  A  C  K  T  V  D  K  *  A  V  P  T  C  N  C  K  Y  *  L  A  G  I  M  R  N  K  T  N  S  Y  S  S  D  C  I  V  *  L  I  C  W  L  R  S  L  I  H  L  A  K  V  *  E  R  T  T  K  M  L  L  *  R  Y  V  F  L  N  R  P  C  W  L  </first_frame>
            <second_frame>  K  G :   Q  F  I  Y  L  D  L  V  F  H  F  S  L  T  W  K  *  L  I  G  G  S  G  V  S  G  A  P  T  S  F  F  L  L  Q  L  M  A  T  Y  C  L  C  I  S  Q  S  G  E  I  S  C  L  :  H  V  Q  P  F  T  I  T  S  S  S  C  L  *  Q  V  L  *  C  Y  L  P  V  G  L  Q  A  L  G  V  A  L  D  F   : G  C  I  I  *  L  *  F  V  I  T  R  F  I  F  H  F  F  T  *  R  S  W  L  I  F  S  R :   R  K  I  G  F  W  T  A  H  I  T  Q  R  *  K  M  Q  G  F  L  M  Q  T  G  S  K  L  V  K  L  *  T  N  K  Q  S  Q  H  V  I  V  N  I  D  W  L  V  L  *  E  T  K  L  I  V  I  Q  V  I  A  L  S  S  L  F  A  G  *  D  H  *  S  T  W  Q  K  Y  K  K  E  Q  L  K  C  Y  C  K  D  M  Y  F  *  I  D  H  A  G  * </second_frame>
            <third_frame>   K   : G  N  L  Y  I  W  T  W  Y  S  T  F  P  *  H  G  N  S  *  *  G  E  V  A  C  L  E  H  Q  Q  A  S  S  Y  C  S  L  W  L  H  I  V  C  A  F  L  K  V  E  R  *  A  A  S :   T  S  S  L  L  Q  L  R  H  R  H  V  C  D  K  C  C  N  V  I  C  L  W  A  C  R  H  *  G  W  L  W  T  L  :  V  V  *  F  D  C  S  L  L  S  L  A  L  S  S  I  S  L  R  D  V  P  G  *  F  F  Q   : G  G  R  L  A  S  G  Q  R  I  L  L  R  D  E  R  C  R  V  F  *  C  R  R  G  V  S  L  *  N  C  R  Q  I  S  S  P  N  M  *  L  *  I  L  T  G  W  Y  Y  E  K  Q  N  *  *  L  F  K  *  L  H  C  L  A  Y  L  L  V  E  I  I  D  P  L  G  K  S  I  R  K  N  N  *  N  V  I  V  K  I  C  I  F  E  *  T  M  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96504" stop="96506"/>
                    <exon start="96591" stop="96750"/>
                    <exon start="96850" stop="96952"/>
                    <exon start="97047" stop="97128"/>
                    <exon start="97202" stop="97279"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAIYIFGLGIPLFLDMEIADRGKWRVWSTNKLLLTAAYGYILFVHFSKWRDKLPPRPAFYNYVIVMFVTSAVMLFACGLAGIRGGFGLWLYNLTVVCYHSLYLPFLYVTFLADFFKEEDWLLDSAYYSEMKDAGFFDADGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="105335" PGL_stop="97914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105335" e_stop="105214"/>
            <exon e_start="103658" e_stop="103591"/>
            <exon e_start="103512" e_stop="103347"/>
            <exon e_start="103244" e_stop="103182"/>
            <exon e_start="102832" e_stop="102737"/>
            <exon e_start="102470" e_stop="102303"/>
            <exon e_start="100140" e_stop="99970"/>
            <exon e_start="99024" e_stop="98875"/>
            <exon e_start="98809" e_stop="98678"/>
            <exon e_start="98269" e_stop="97914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.308" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105335" e_stop="105214" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.308" acc_prob="0.973">
            <gDNA_intron_boundary i_start="105213" i_stop="103659" i_length="1555"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103658" e_stop="103591" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.997">
            <gDNA_intron_boundary i_start="103590" i_stop="103513" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103512" e_stop="103347" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.981">
            <gDNA_intron_boundary i_start="103346" i_stop="103245" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103244" e_stop="103182" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="103181" i_stop="102833" i_length="349"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102832" e_stop="102737" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="102736" i_stop="102471" i_length="266"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102470" e_stop="102303" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102302" i_stop="100141" i_length="2162"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="100140" e_stop="99970" e_length="171"/>
          </exon>
          <intron i_serial="7" don_prob="0.887" acc_prob="0.982">
            <gDNA_intron_boundary i_start="99969" i_stop="99025" i_length="945"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99024" e_stop="98875" e_length="150"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.967">
            <gDNA_intron_boundary i_start="98874" i_stop="98810" i_length="65"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="98809" e_stop="98678" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.943">
            <gDNA_intron_boundary i_start="98677" i_stop="98270" i_length="408"/>
          </intron>
          <exon e_serial="10" e_score="0.986">
            <gDNA_exon_boundary e_start="98269" e_stop="97914" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105335" stop="105214"/>
              <exon start="103658" stop="103611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105334" stop="105214"/>
              <exon start="103658" stop="103591"/>
              <exon start="103512" stop="103347"/>
              <exon start="103244" stop="103182"/>
              <exon start="102832" stop="102737"/>
              <exon start="102470" stop="102421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103405" stop="103347"/>
              <exon start="103244" stop="103182"/>
              <exon start="102832" stop="102737"/>
              <exon start="102470" stop="102303"/>
              <exon start="100140" stop="100062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102791" stop="102737"/>
              <exon start="102470" stop="102303"/>
              <exon start="100140" stop="99970"/>
              <exon start="99024" stop="98875"/>
              <exon start="98809" stop="98800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102318" stop="102303"/>
              <exon start="100140" stop="99970"/>
              <exon start="99024" stop="98875"/>
              <exon start="98809" stop="98678"/>
              <exon start="98269" stop="98114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102318" stop="102303"/>
              <exon start="100140" stop="99970"/>
              <exon start="99024" stop="98875"/>
              <exon start="98809" stop="98678"/>
              <exon start="98269" stop="98173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100120" stop="99970"/>
              <exon start="99024" stop="98875"/>
              <exon start="98809" stop="98747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100031" stop="99970"/>
              <exon start="99024" stop="98875"/>
              <exon start="98809" stop="98678"/>
              <exon start="98269" stop="97914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG : ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG : CTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG : GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG : GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG : GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG : GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG : GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG : GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG : GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAATGTCCA</gDNA_template>
            <first_frame> L  K  V  A  *  E  S  N  F  M  T  T  S  T  L  R  L  L  L  E  Q  S  L  I  K  R  T  L  C  I  I  S  L  G  P  T  C  F  V  D  * :   W  L  T  Q  L  T  M  A  *  S  M  Q  N  L  G  F  *  I  L  I  C  L   : A  W  C  K  A  H  L  R  I  L  K  T  L  D  A  S  R  L  P  R  T  V  L  N  H  *  C  W  A  Q  *  H  L  S  I  I  *  S  T  P  L  Y  Q  C  L  A  Q  K  *  D  L  I  H  H  L  R :   F  S  Y  K  Y  C  L  V  L  L  N  M  M  S  S  R  *  G  I  M  R :   K  T  T  M  K  N  *  L  R  K  F  H  M  L  S  T  T  I  A  W  M  I  L  M  *  K  Q  I  C  S  F  R :   L  I  F  P  N  Q  S  C  Q  S  A  I  M  S  Q  T  *  S  L  C  W  I  K  V  Y  V  L  S  R  L  *  *  I  F  V  P  T  V  D  G  S  Q  V  P  L  P  V  C  I  C  C  K  W  S  C  R :   A  C  G  L  I  E  T  L  L  F  G  C  Y  H  A  *  L  M  I  Y  S  T  H  C  K  K  K  E  L  L  V  S  S  S  C  W  I  A  L  Q  N  H  Y  G  L  S  L  E  V  Q  L  P  R  N  C  I  R :   I  C  G  I  S  L  G  F  K  F  D  L  K  F  S  Q  R  N  L  M  V  E  R  F  *  P  *  T  L  D  W  K  M  Q  I  L  S  E  E  Q  Q  K  L  L  S  H  D  I  Q  R :   *  K  M  K  L  G  G  *  S  F  V  I  L  P  Q  V  N  C  M  L  *  R  E  C  L  S  L  V  V  C  R  H  T  W  I  C  H  P  L  *  P  I  S  R :   G  *  S  S  F  *  Y  R  I  L  T  L  G  L  N  K  N  T  L  L  K  D  *  L  N  L  E  E  T  I  P  T  P  D  C  N  A  M  L  P  K  S  G  F  D  F  V  *  H  K  G  S  L  F  H  N  Q  L  *  K  L  C  Y  G  L  H  L  *  *  D  I  A  L  *  F  S  *  V  I  D  R  H  P  S  F  F  F  V  M  *  I  Q  L  Y  I  C  I  R  V  L  L  K  V  L  Y  T  H  P  N  Q  Y  R  A  F  H  S  M  S  </first_frame>
            <second_frame>  *  K  *  P  E  R  A  T  S  *  P  H  Q  R  *  D  C  Y  W  N  N  L  S  *  R  G  R  Y  A  L  S  H  L  D  L  L  V  S  *  I   : D  G  *  P  S  L  L  W  P  R  A  C  R  T  W  D  S  K  F  L  F  V  *  :  L  G  A  K  H  I  *  G  S  *  R  L  W  M  H  Q  G  Y  R  G  Q  C  *  T  T  D  V  G  L  N  S  I  S  V  L  S  E  V  H  H  C  I  N  V  W  L  K  N  R  I  *  Y  I  T  *   : G  F  P  T  N  T  V  W  C  F  *  I  *  *  A  P  G  E  A  *  *   : G  K  L  Q  *  K  I  S  *  E  S  S  I  C  C  R  P  Q  S  P  G  *  S  S  C  E  S  K  S  A  L  S   : G  S  F  F  P  I  R  V  A  N  Q  R  L  C  H  R  L  K  V  C  A  G  S  K  Y  T  C  Y  P  G  Y  D  R  Y  L  C  Q  Q  W  M  A  L  K  Y  H  Y  L  Y  A  S  V  A  N  G  H  A   : G  L  V  V  *  *  R  L  S  S  L  D  V  T  M  H  D  *  *  S  T  Q  L  I  A  K  K  R  N  C  *  Y  P  A  A  V  G  L  P  F  R  I  I  T  G  Y  H  W  K  F  S  C  L  E  T  V  S   : G  Y  A  A  F  P  S  D  S  S  S  T  *  N  S  A  K  G  I  *  W  W  K  D  F  N  L  E  H  *  I  G  R  C  K  Y  S  A  K  N  S  K  S  F  Y  P  T  I  S  K   : G  K  R  *  S  L  V  V  S  P  L  *  Y  F  R  K  *  T  V  C  S  E  E  S  V  F  L  W  S  F  A  D  T  H  G  F  A  I  H  S  D  Q  F  P   : G  D  K  A  H  S  S  I  G  F  L  H  W  V  *  T  R  T  L  Y  *  R  I  D  L  I  W  K  K  L  Y  Q  L  Q  I  V  M  Q  C  S  Q  N  Q  D  L  T  L  Y  S  T  K  A  H  F  F  T  I  S  Y  R  S  C  V  T  V  Y  I  C  N  E  I  L  L  C  N  F  L  E  *  L  I  G  I  L  H  F  S  L  S  C  R  S  N  C  I  Y  A  S  G  Y  C  *  K  S  Y  T  H  T  L  I  N  I  E  L  S  I  Q  C  P </second_frame>
            <third_frame>   E  S  S  L  R  E  Q  L  H  D  H  I  N  A  E  I  V  T  G  T  I  S  H  K  E  D  A  M  H  Y  L  T  W  T  Y  L  F  R  R  L  :  M  V  N  P  A  Y  Y  G  L  E  H  A  E  P  G  I  L  N  S  Y  L  S  S :   L  V  Q  S  T  F  E  D  L  E  D  S  G  C  I  K  V  T  E  D  S  V  E  P  L  M  L  G  S  I  A  S  Q  Y  Y  L  K  Y  T  T  V  S  M  F  G  S  K  I  G  S  D  T  S  L  E  :  V  F  L  Q  I  L  S  G  A  S  E  Y  D  E  L  P  V  R  H  N  E  :  E  N  Y  N  E  K  L  A  E  K  V  P  Y  A  V  D  H  N  R  L  D  D  P  H  V  K  A  N  L  L  F  Q  :  A  H  F  S  Q  S  E  L  P  I  S  D  Y  V  T  D  L  K  S  V  L  D  Q  S  I  R  V  I  Q  A  M  I  D  I  C  A  N  S  G  W  L  S  S  T  I  T  C  M  H  L  L  Q  M  V  M  Q  :  G  L  W  F  D  R  D  S  P  L  W  M  L  P  C  M  T  D  D  L  L  N  S  L  Q  K  K  G  I  A  S  I  Q  Q  L  L  D  C  P  S  E  S  L  R  A  I  T  G  S  S  A  A  S  K  L  Y  Q  :  D  M  R  H  F  P  R  I  Q  V  R  L  K  I  Q  P  K  E  S  N  G  G  K  I  L  T  L  N  I  R  L  E  D  A  N  T  Q  R  R  T  A  K  A  F  I  P  R  Y  P  K  :  V  K  D  E  A  W  W  L  V  L  C  N  T  S  A  S  E  L  Y  A  L  K  R  V  S  F  S  G  R  L  Q  T  H  M  D  L  P  S  T  L  T  N  F  Q  :  G  I  K  L  I  L  V  S  D  S  Y  I  G  F  E  Q  E  H  S  I  E  G  L  T  *  S  G  R  N  Y  T  N  S  R  L  *  C  N  A  P  K  I  R  I  *  L  C  I  A  Q  R  L  T  F  S  Q  S  V  I  E  V  V  L  R  S  T  F  V  M  R  Y  C  F  V  I  F  L  S  N  *  S  A  S  F  I  F  L  C  H  V  D  P  I  V  Y  M  H  Q  G  T  V  E  S  L  I  H  T  P  *  S  I  *  S  F  P  F  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105333" stop="105214"/>
                    <exon start="103658" stop="103591"/>
                    <exon start="103512" stop="103347"/>
                    <exon start="103244" stop="103182"/>
                    <exon start="102832" stop="102737"/>
                    <exon start="102470" stop="102303"/>
                    <exon start="100140" stop="99970"/>
                    <exon start="99024" stop="98875"/>
                    <exon start="98809" stop="98678"/>
                    <exon start="98269" stop="98195"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESSLREQLHDHINAEIVTGTISHKEDAMHYLTWTYLFRRLMVNPAYYGLEHAEPGILNSYLSSLVQSTFEDLEDSGCIKVTEDSVEPLMLGSIASQYYLKYTTVSMFGSKIGSDTSLEVFLQILSGASEYDELPVRHNEENYNEKLAEKVPYAVDHNRLDDPHVKANLLFQAHFSQSELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSTITCMHLLQMVMQGLWFDRDSPLWMLPCMTDDLLNSLQKKGIASIQQLLDCPSESLRAITGSSAASKLYQDMRHFPRIQVRLKIQPKESNGGKILTLNIRLEDANTQRRTAKAFIPRYPKVKDEAWWLVLCNTSASELYALKRVSFSGRLQTHMDLPSTLTNFQGIKLILVSDSYIGFEQEHSIEGLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 175 chains have been computed
$ 
$ memory statistics:
$ 286224 bytes spliced alignments in total
$ 118 spliced alignments have been stored
$ 2425 bytes was the average size of a spliced alignment
$ 20952 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1904 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 193 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:36:11
-->
