<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:40:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319855" ref_strand="+" ref_description="SGN-U319855        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl hydrolase family 79 N-terminal domain-containing protein, similar to beta-glucuronidase GI:8918740 from (Scutellaria baicalensis) | chr5:24649210-24652505 REVERSE | Aliases: None(evalue: 0, score=652) genbank/nr: Heparanase-like(evalue: 0, score=655)">
      <seq>ttgatttccttttcggctgtaagccaatattaacgacaaaggttaagcttaagacacctcactactgcaaatccaacaaataatttgactctgctcaattgctcatacatttgacacctcattgtattacaaagtttgtctatatttcctctttcgaacttcgacaatggcaacagttttgtaccaaaaattccttaattcttgaatgaatgaacgctaattgttgctatataatacacttagacaaatctgaaacttacccttttcatttcacactcttttcttgttcttttcccccaccacaaggtactggctgataaagcttgcccctttttggcacagaggctgcctgcacattatcagtgttgctttttctttctttttggaacttgtgctctggtgatctcaaattcttgtggtgtttaaggttatttctcatctgggttcagctcaattgttcgcttatgaatctgttcaaagaggggtgaagctgagtagtttaaaagccaatgggcttcccacccttattgttaatctttttggcactgtgtcctgcatttctggcacaaatagttgaagaaacagaatttctgattgatggaactgtaaaaattgctgagacagataataattatgtttgcgctactcttgactggtggcctaaagaaaagtgtaaccacaacgattgcccttggggctcgacatctctgataaatctggatttatctcacccctttctggcaaattctattcaagctttcaaccatctgagattacgacttggaggttctttgcaaaaccgaataatctatgatgtgggcaatttggagtcgccttgccatccgtttaccaagcaaggggatgagttgtttggattttcaaatggatgtttacgtatggatagatgggatgagctaaatagctttttcaataagacaggagcacttgtgacctttggtctgaatgcattgcgagggaggcagaggaccagtaagcgtgtctgggaagggaattgggattccagcaacgcccatgatttcatagattacactgtttccaagggctaccaaatacactcatgggaatttggaaatgagttgagtggtaaggggattggtgcaaaggttgatgctgaacaatatggagaagatgttatacatcttaacaatctcatagaccaattgtataagcatttccaaccccgaccacttctcttagcaccaggaggattctatgataaagagtggtttgagacgttccttgagatgtcagggccaggcactgtcgatgccttgactcatcatatatataatcttggtgcaggatctgacctcaatctcgtaaacaaaattttaaaccctctgcacttgaataaaattgctgacacattcagtaatcttagtcaaaccattgaaatgaatggtccttggtcttcagcttgggttggagaatctggtggggccttcaataacggaggtcctaatgtgtctaacacctttgtgaacagtttttggtacttggatcagcttgggatggcagccacatatcacactaaagtatattgcaggcagacttttattggtggaaactatgggctccttgacacaagtacatttgtcccaaatcctgattattatagtgcacttctttggcatcggctgatgggaaaaggagttcttgctgttagcaacaatgcatcatcatatctgcgctcgtatgcccactgtacaagacatagagcaggtgtaacattacttttgatcaatctaagcaaccaaactcattatggagtcaacatcgaatctagtgtaagcatcacctcgcatgtcaaagagaaatcaaatcacaagagttctttcgtgcaacgtcttaagaaaactatttcatgggttggaaaaaaatcatcagatgttacattatcacgagaagagtaccatctgactccactagatgggaaccttcaaagcagaaccatgctcttgaatggaaaaccattacaactcgcagaaaatgggaacatcccaagtttgtctccagtccttgtaaagctgaagtctccaatatcaatttcccccttgtccatcaaattcatagtattcccctacttaagctctcctgtttgtacataaaattaggaaatacttttgtctgatagttatcatctggcactcttatctattcccaacttagtaattgtataattgctacaataaactgagctgccaaattttatgcagttatgtattatatggctaggtaaatccatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16680" stop="22889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16980" g_stop="17440" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17441" i_stop="18158" i_length="718">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18159" g_stop="18416" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="719" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18417" i_stop="18510" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18511" g_stop="18547" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="756" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18548" i_stop="18761" i_length="214">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18762" g_stop="18945" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="940" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18946" i_stop="19362" i_length="417">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19363" g_stop="19511" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="941" r_stop="1089" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19512" i_stop="19608" i_length="97">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19609" g_stop="19842" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1090" r_stop="1323" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20364" g_stop="20553" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1324" r_stop="1513" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20642" g_stop="20767" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1514" r_stop="1639" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20893" g_stop="20992" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1640" r_stop="1739" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="22060" g_stop="22589" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1740" r_stop="2269" r_length="530" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2270" polyA_stop="2283"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-U319855" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2269</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16980" e_stop="17440"/>
          <exon e_start="18159" e_stop="18416"/>
          <exon e_start="18511" e_stop="18547"/>
          <exon e_start="18762" e_stop="18945"/>
          <exon e_start="19363" e_stop="19511"/>
          <exon e_start="19609" e_stop="19842"/>
          <exon e_start="20364" e_stop="20553"/>
          <exon e_start="20642" e_stop="20767"/>
          <exon e_start="20893" e_stop="20992"/>
          <exon e_start="22060" e_stop="22589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCCTTTTCGGCTGTAAGCCAATATTAACGACAAATTTTAAGCTTAAGACACCTCACTACTGCAAATCCAACAAATAATTTGACTCTGCTCAATTGCTCATACATTTGACACCTCATTGTATTACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCGGTAAGTCTGAAAGATCTTAGCTTTTTGTTGTTTTGTATGCTATTGTCTAAGGGAGTTCTTGTCATTGTTGGATCTAATTCTTGTTTTGCTGATTCTGATTGGTTAATTTTCATTCATCTTTTTAATTAATTCCAAAGTGTAATTAAGTATACGCACTTGTCCAGTTTGGTTTTATAGCTTTTGTAATATCTTACCAAGAAAAGCAATATGCTATGCACCCTCATTTCCTGTTCATGTTTTGTTAATCTACTTTGATTTTTGACATCATGTTAGATTCAGTTACTCTAATCAATAGACATAGATTGATCATAGTTTGGATAAAGGAATATTATGTAATTTGGTCGAGATGTTTTCTTCACTGTTGTTTTTCCTTTTCATTGCTATTTTGTTTTGCTTCACTTGAGCCTAGTATCTCTTGGAAACAACCTCGTGGAGGTAGGGGTAAGGTCTGTGTACACTCACCCCAATACCCCGTTGGGTATGTTGTTGTTGTTGTTATATGCAAATTAGTTGTAGCTACCTCAAGATACTGAAGGAGCCTTAAATATGGAATGACAAGAAGAAGTTTATTTTGCTAAGATGCTTAATCAGAGAATTGCTGCTAGCATTCTGATGAAATGCCATATTTTTCCTCATTATCGTTCATGTAAAAGTTCTTTTATTGCTTGTTAAACTTCTCTTAGACTCTTAACATTTATTATATCCTCGTCTGTTACAGCTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATCTGGTAAAGTTCTACTATTAATTGATATAGTGGCATATATTGCTTTGTAAAAGTCACAGCACAGTTACCATTCATTATTTTCGTTTGATTTTTTCAGGATTTATCTCACCCCTTTCTGGCAAATTCTATTCAAGGTCAGCTTGTTCCCGTCATGTGATAACTTTACCTTAGTATTTGAGATCTTGTTGTTCTTACTTTAATTAACAAACTTTGACTGGTAAACTCCATAACTTCACCTTAAACATCAAATGAACCATCTATTTACAACAGTGAGCAAATCAGACTTGATGCTTCTTCAGAATGCTCATTGATTTCTCGTCTGTTCTGATTGCTAATTTGGTGGACCAGCTTTCAACCATCTGAGATTACGACTTGGAGGTTCTTTGCAAAACCGAATAATCTATGATGTGGGCAATTTGGAGTCGCCTTGCCATCCGTTTACCAAGCAAGGGGATGAGTTGTTTGGATTTTCAAATGGATGTTTACGTATGGATAGATGGGATGAGCTAAATAGCTTTTTCAATAAGACAGGGTGAGTTATTAACTTATAGCTTTTTCAATAAGACAGGGTGAGTTATTAACTTTTGTGCTGCTTTCTTGTTCCAATTTTATTCTCGGAGTATGCCATAACTTACTTAAAATTTTATGAAATTTGTTAAAGACATAAGATGAAATAAATGTAAACGTAATCTCTCTAACGGTACTCACTTCAACATGGTATTAGAGCCAAACAAAGGTCCTGATTTCAAGTCTTTACCATCACTTATTAACATAAACTAGTTCCACATGCCTGGCAAAGAAAAAAAGAGCATTGGGCCTGCATGTGAGGAGTGTGTTAAGGCATAATGAGAAAATAAAAGTGTCCCCTGCCTATTAATCACTCAGCTTTTACATGAGGTGGTCACTCACTTCAACAAAGTTCATTCCAGTTTCACTAATTATGCTGCAGAGCACTTGTGACCTTTGGTCTGAATGCATTGCGAGGGAGGCAGAGGACCAGTAAGCGTGTCTGGGAAGGGAATTGGGATTCCAGCAACGCCCATGATTTCATAGATTACACTGTTTCCAAGGGCTACCAAATACACTCATGGGAATTTGGTATAATTGCTGACAATTTCCCTCTCTCTTTTTTGGTATTTTACCTTGTTTAATAGAAGTTGGATTTCCTTAAACAATGGTTCCACTTGGTTTGCAGGAAATGAGTTGAGTGGTAAGGGGATTGGTGCAAAGGTTGATGCTGAACAATATGGAGAAGATGTTATACATCTTAACAATCTCATAGACCAATTGTATAAGCATTTCCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTATGATAAAGAGTGGTTTGAGACGTTCCTTGAGATGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAGGTAAGCTAGCATTAAATTTTATGGGTAGCTTGATACTGTATGAAAGCCTTTATTAGCTTAGAAAATCTAGTGCTAGGATGATCACATCAAATCTAAGGAGTGACAGCGTTTTCTTGGATCTATTTGTTTCTGTTTAAAGTGTTTTTTGCGTCTACTACAAAAATCATTTGTTACTTGTAATGTGGCACTAGCTATTGACATCATTAGGAGGTTGAGAACCATCTAGTAAAAGAGAACTAGTTGGTGGAACGAAATTAGATAAATTCTAATTTATCAATCAACAGTATCATTGACAGCACATTTCATTAACAAAAATGTTAGTATTTGCTTCTGTTAAATTTGAATTATGAGCAGCTGCTCTGATAGATGTATGATTTACTTTATCTATCTTTTCTTGTAATTGTTAGTGTACTGGTCTATTTGAGTATAAGGTTACATTACTACTTGTGTTCTCTAGATTTGTAAGTCAATTTACTCATGTACTTGCTCCATTGAATAAAACCAGAAAATTTCTGTTTCAGGATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTGGTAAATTTCTTGGCTGACTTGATTTATTTTTTATTCAGTAATCAGTTAATTATTTTTGTTTCATGCTTTATCTTGACATGGAATTTAGGTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAGGTGAGACAATAGATTTACCAATCCAAGGTTGATTCTCTTTGCTATTAAAAGGAGCATTTATCCTAATTCTAGTTTTTACGTCCCTAATAATCTGATCCAAAATCATTATACTTGAACGAGCACAGTGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGAGTAAGAGCCCTTCACAGAAAGTAATTTGATGAGTTCCTGAAAGGATGTCTTAAACTTACATGCGTAATCACCGTTCTATAAACCTTGTTCATCGTCAATAGTAATATCATTTCTTCTTGTGTTTCATTGAGTCCATCCACTTCAGGTCTTCAATCTAATTGTTTGTAGAGAGTAAAACGTCACAGCTTCTTTTAGTTTGGGAGAAAAGATGCAATGATAAACAACTATATTAGCTTTGCATAGTCAGGTCAAGCCCAGATTAAGGAGGGTTGCGGCAGGTTGGTTATTAACATAAGAATAGTCATAATATACTGAAACCTCTAGATATTGAACATGGTATCCATTTTAGTATTAAATAGGCAAGATGTCCCATCACATCCCTGTCTGAGTGTGAGAGTTTATGCTTAGTTCCAACCATGAAAGGCTCATCAGTAGAAAATTATTAGCATTGGCCGAATTGAGCGAAAATGGACCTATCAGATTCGTATAGAACCAAACTAAATAGTTTGAATAGAACGGAGATCGGAATGATATAGGAGATTCATGTAAGATTGAGGTGTACTTAATTGGTTGATTGATTGATAACGAGGCAAGCTGTTTTTCTTGATTATTATAATTTAGACCATAAATTGTAACTTATAAAGTCCATATGCTTAAAACTACTTCAGGAGGAGTAAAAATAGCAAGGTATTGTGTTTAAATGCTTCGATTGTTATAATTAAAGTTGATGCAATTCAGTCTCAACTAGTTTTTTCTTTTATAAGATGATGGCTCTCCCTTGTGCTTAGTTTGGCAATCGAACTTACCACTCTTGGATATGCTTCTTATGTGTTGCTTACGATGAATGAGTCAATCAAAATGGAGGATAGAACACCTTTCTTATACAATTTTGTCGCATTTTGTTGAAGCCAGTTTCAACTCACTTATATTCCCATTTTCTCTTTAGCCATACTGCAGTAATTTGGTTATTCTTGATTAAATATTCGATAAAGCCTTCATATAAACATGCAATGATTTGCATTTCCCTGCTAAAACCTTTCAATGTTACTGGTGTTCCCTTTGTGCAGGCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCCAAGTTTGTCTCCAGTCCTTGTAAAGCTGAAGTCTCCAATATCAATTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCTACTTAAGCTCTCCTGTTTGTACATAGAATTAGGAAATACTTTTGTCTGATAGTTATCATCTGGCACTCTTATCTATTCACAACTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCCAAATTTTATGCAGTTATGTATTATATGGCTAGGTAAATCCATTTA</genome_strand>
        <mrna_strand>TTGATTTCCTTTTCGGCTGTAAGCCAATATTAACGACAAAGGTTAAGCTTAAGACACCTCACTACTGCAAATCCAACAAATAATTTGACTCTGCTCAATTGCTCATACATTTGACACCTCATTGTATTACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATCTG..............................................................................................GATTTATCTCACCCCTTTCTGGCAAATTCTATTCAAG......................................................................................................................................................................................................................CTTTCAACCATCTGAGATTACGACTTGGAGGTTCTTTGCAAAACCGAATAATCTATGATGTGGGCAATTTGGAGTCGCCTTGCCATCCGTTTACCAAGCAAGGGGATGAGTTGTTTGGATTTTCAAATGGATGTTTACGTATGGATAGATGGGATGAGCTAAATAGCTTTTTCAATAAGACAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTTGTGACCTTTGGTCTGAATGCATTGCGAGGGAGGCAGAGGACCAGTAAGCGTGTCTGGGAAGGGAATTGGGATTCCAGCAACGCCCATGATTTCATAGATTACACTGTTTCCAAGGGCTACCAAATACACTCATGGGAATTTG.................................................................................................GAAATGAGTTGAGTGGTAAGGGGATTGGTGCAAAGGTTGATGCTGAACAATATGGAGAAGATGTTATACATCTTAACAATCTCATAGACCAATTGTATAAGCATTTCCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTATGATAAAGAGTGGTTTGAGACGTTCCTTGAGATGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG........................................................................................GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG.............................................................................................................................TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAAAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCCAAGTTTGTCTCCAGTCCTTGTAAAGCTGAAGTCTCCAATATCAATTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCTACTTAAGCTCTCCTGTTTGTACATAAAATTAGGAAATACTTTTGTCTGATAGTTATCATCTGGCACTCTTATCTATTCCCAACTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCCAAATTTTATGCAGTTATGTATTATATGGCTAGGTAAATCCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318618" ref_strand="+" ref_description="SGN-U318618        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | SNAP25 homologous protein SNAP33 (SNAP33) (SNAP33B) / synaptosomal-associated protein SNAP25-like 1 / snap25a, identical to SNAP25 homologous protein SNAP33 (AtSNAP33) (Synaptosomal-associated protein SNAP25-like 1) (SNAP-25 like protein 1) (Snap25a) (Swiss-Prot:Q9S7P9) (Arabidopsis thaliana) | chr5:24640549-24642857 FORWARD | Aliases: MAF19.2, MAF19_2(evalue: 2e-92, score=336) genbank/nr: gi|15240163|ref|NP_200929.1| syntaxin SNAP33 [Arabidopsis thaliana] gi|27805727|sp|Q9S7P9|SN33_ARATH SNAP25 homologous protein SNAP33 (AtSNAP33) (Synaptosomal-associated protein SNAP25-like 1) (SNAP-25 like protein 1) (Snap25a) gi|5731763|emb|CAB52582.1| SNAP33 protein [Arabidopsis thaliana] gi|5731764|emb|CAB52583.1| SNAP33B protein [Arabidopsis thaliana] gi|9759467|dbj|BAB10383.1| SNAP25A protein [Arabidopsis thaliana] gi|16323047|gb|AAL15258.1| AT5g61210/maf19_210 [Arabidopsis thaliana] gi|18072736|emb|CAC79615.1| SNAP-25 like protein [Arabidopsis thaliana] gi|22655332|gb|AAM98258.1| At5g61210/maf19_210 [Arabidopsis thaliana](evalue: 1e-90, score=336)">
      <seq>gacattatagtttcttagattttttctacaatttatcttcttcggattttcagtctctttctgcagataatttcttaatctaccaggtccatccccgtgggattactttctatctatcaaaaaatgcatggtcttaagaagtctcctttacatcggagtgctagaaaaaaatctgcggatcctgtggcccatagtaattctggatcaaatccctttgattctgacaatgagtcagacaagaagcaaactgtaaaaccatccaggaaaatatcatcggagccttctgcagctgccccaaatttgagtacaaacccttttgatgatgatgaaattaaagagactccttcacatgcttactcaacttcgacggcaagaaataaatacaagaatgatttccgggagtctggtggatttgagaaccaaactgtagaggagttggaaaactatgccgtctacaggtcagaagagactacaaaatctgttaatagctgcctgaagattgcacaagacatgcgagaggatgcaacaaaaactttgataactttacatcaacagggagaacaaattacaagaacccatatgactgcagcagatatcgatcatgatcttagcaggggtgaaaaactcttggggagtcttggaggcatattttcgaagacttggaagccaaagacgagtcgcccgattacagggcccgttatcacaagaatgtcagatgatccagttcaaagaaggggcaaccacttggagcagagggagaaattaggattgaactctgcacccaaggcaaggtcaagttcaaggacaccacacccagagcctacaaatgcaatgcagaaagttgaggctgagaaagccaagcaagatgatggactgtcagaactcagcgatctgttgggggagctcaagaatatggctgttgacatgggatctgaaattgagaggcataaagatgcattggatcatactgaacaggatgttgatgagcttggcaccagagttcaaggggccaaccggaggattcggcgcttgcttggaaagtaaaccagtagacatctgttgtgggaacctattaatgagctttcagacgttaacttcagtttatcatttcagctattcttgagtttttcacaaatgcttctctctgtaattttatgttactttgtattataattttacaatattctatgacagtaaaccaagttaattgtatggtatttggaaggcaggacgacaaaattactactcgaccattgtagagaaataacgtgcaacacaaataagattactgtttgatcagtgaagacatggttgaatgtactttatgctaacatccattttttttataaattccaatcaaccattcatcgagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27144" stop="22541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26845" g_stop="26793" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26792" i_stop="25594" i_length="1199">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25593" g_stop="25032" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="615" r_length="562" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24738" g_stop="24645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="709" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24520" g_stop="24384" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="846" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23628" g_stop="23531" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="944" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23270" g_stop="22844" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1371" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1374" polyA_stop="1384"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-U318618" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1371</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26845" e_stop="26793"/>
          <exon e_start="25593" e_stop="25032"/>
          <exon e_start="24738" e_stop="24645"/>
          <exon e_start="24520" e_stop="24384"/>
          <exon e_start="23628" e_stop="23531"/>
          <exon e_start="23270" e_stop="22844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTATAGTTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAGGTACTGCGTATCATCATTTTGATCTATTCTGTTTTTCAGTTATGGAGATTCTGTTTTCTTTCCTGTTTGCTGTACATTGTGGGGTTTTGTACAAGTTCTGAATTTCAATTTTATGAATTTATGAAGGAAAAAATGGATCTTTTTGTTCATATAGGTCGTTTCAAACTTCATTCAGTGATTTGTTTTTGTTCTTCTATTTTTTGTGTATTTTTATGTGAGAAATTATGATTTGGAGCTATCTTATCTACTCTGTAGGAAAACCTTGTTTTCTCGCTATATTCGTGTTTTTTTTTACTATATGATTTGTGGGAATTTGAGAATCAGGATGATAGCGTTAGGAATATCAATCGGGAATATTCTTAAATTTCTGCTTAGTTAAAGGATGATTGTTGGAATTTGCTTCGATAGAAGAAACTTGAAATTCTGGGTTTTGTTAGGACGGAGATGTAAATAGAACTGGACTTGTATATCCCCTAAATTTTCGATATTATTCTTGCTCCTTGTTGGATTTTCTTGATTTTTTCAAGGATTTACTTAGTTTGACTTTGGTAACTAAATTTCTCAACTACCACCAAGCTATCCTCGCTTGCCTGTGTTATGTAAATGAAACCGGTTCAAATAGAGAGATGCTCTTGGGTTTCCTCTTTCATTATCATAGCTAAATTTGAGTAGGATGAATCAACCTGAGGAAAAGTAGGTAAGGTTAGACCCCTCGACTTGATTGAAGTTGACTTCGCTGAGTTCTGAATAAATCAAAAAGTTTATTGATTTGATTCGCCCCATTTCATTTATTTGGGTGAGAGGGAGGCTGTGAGTCACCTGGGCTATGGATCTTTCCGTTGGTTGATTCTCGAGATCACCTCTTCAAAGAAAAAAAAAAGAGGGCCCATGGTTCTGGCCCTGCAAATGAATAGGAAGCACTTGGTACTGAGATGCAGTTGTTTGTTGTTCGTGTTTTTGTTGTAGTATTATATTAGTATTGCATACTTGATTTTAGACTTCTCTTATTAGTGCTACATCTCTGAACAAAGCTTGGTTTGAGTCTTTATTGCTATCTTTTGCGTGTTGTGTGCTCCTAATCTCTTATCTTCTAGCCAATGTTCCTTTGTGATCTGTTACTGAATTGTCTCCTTGTACGTGTCTCACAGTAGCAAACTATCAGTTCTCTGTATGATGAACTTCGCTTAATAGTTTGATAGTCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGGGTATGACTTCTTTAGTTCACTCATATAAGTTTTTTCTAGTTTGCAGAAGCAAACATAATTGCAATTTAACATGTTAGTTTGCTTTTAGATGGAGTTATAGATTTATTTATACATAACTAGTCTGTTTTTACCCTTCCGCCTAGAAGTCGTTACGCCCTTAAAGATGTCTCTTACTCGCTGAACTGCTAAGTTCTTCATTTCATGTACTTGTTACAAAAAATAATAATTCATTACATGTTTTGCAATTGTTACCTGTTATCCTTGTGAGACTTATGTTTGAAACTTAATTTCAGGGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAAGTAATTCATTTTATTTTTGTTCTTCTTTTTCATTTACTATTATTTGAAGAACGTTAGGGAAAAGGGATGGGTTTTGAGTCAACTGACACTGATAGCTAATTTGATACTCTGTTAATGTGCACAGTGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAGGTATGTTCATGTGACTCGGGACAAAATAGAGAATACTGTTACAATTCTCCTCGAAGAAACAAAAAATTTAATAAGGAAGTTCTTCAGATCCAAGTACACCCGGAACCTGCAACTATCAAACATGCAGGACACTATTGATTAATTTTGGTCACCTTTTCTTTTCTGCATCTTTCCTCACTTCACCGTCCACTTTTCTAGCATTTCGACACCTTTTCATCTAATGTTTCTCACTAACGCTCAAGATGCAATTTTCCAGTATGTTTAAGAGTAAATTACAAATTACTCATGTTCATTTCTCTTTTCTTTTTAATTCTAGAGTTACGTCATTATATTCCATTGTTTGTAGGAAGATTTACTTCTAGAAAGAGCCATATTCCATTTTCAAATGTGGCCTAATGTTTGGAGAATTTCTAATAGAAGTTTCCTTTTGGAACACCAAAAGTGAAACAGCAAGAATAGTAAAACACTGTGATCCTTGCAGACTGCATTACCTTAGTGTCCTTGAAAAGTTTGTGTTCTTTGTTATGCTGGGTGTTGGACCTATGAGGCGATTCTTACTGGTTCTGTCATAAATTTTAAGTCCTTGTGGTGATGAAACATTTTCATTCTACACTACCAGATTGAGGATTGAGCATGTGTATTCTCCTCATTTTTTCTCCTCCTTTCTTTATTTGCTCATTTCATGAATATGAATGATATAATATATGACAAATATCAGTTAGCTGATTCTACTGTTTCATTTGAACATTTGACAGGCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAGGTTAGTGTTATAAAATTTATTAAGCAGATTCCAATCTCTCCTTTCTTGTTCTCTCCCTCTTCCACCATCTCCTTATTGAACTGTCACTGTTAAAGTACTGTGCTACTAAGTCGCTTCTTAAAAAATATGTATATGTAACAACTATGCCTCAATCCCAAGCAAGTTGATTTCGACTGTATGAATTCTCACTGTTCATGTCCCTTCATTTAAACCATTCTTGAGCACAATAAGAATTCTGTATACGCTGTTGGATATTACAGGCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGATCAGTGAAGACATGGTTGAATGTACTTTATGCTAACATCCATTTTTTTTATAAATTCCAATCAACCATTCATCGA</genome_strand>
        <mrna_strand>GACATTATAGTTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG.....................................................................................................................................................................................................................................................................................................GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA............................................................................................................................TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG....................................................................................................................................................................................................................................................................GCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGATCAGTGAAGACATGGTTGAATGTACTTTATGCTAACATCCATTTTTTTTATAAATTCCAATCAACCATTCATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326618" ref_strand="+" ref_description="SGN-U326618        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | myb family transcription factor / ELM2 domain-containing protein, contains Pfam profile: PF00249 Myb-like DNA-binding domain; contains Pfam profile: PF01448 ELM2 domain | chr2:1045453-1047678 REVERSE | Aliases: T4M8.10, T4M8_10(evalue: 4e-25, score=102) genbank/nr: expressed(evalue: 2e-26, score=109)">
      <seq>aagaattgggtgctcctgtggagatgctggttcctttggatgtgttcggttgcacatcatggaagcaagggagaaacttaaggcggccttgggtgaggaaacatttgttaggttgggtgtttatgatatgggagagatagtggcagagaaatggagtgaagaggaagaggaattatttcatgaagttgtattttccaatcctgcagcattaggcaagaatttctgggaccaccttgctgttgaatttccttcacggagcaagagagatcttgttagctattacttcaatgtctttattttgcggaagcgtgccaagcagaataggttgacccatcaaatatagacagtgataacgatgaatggcaggagattgatgatgatgttgttgctacgggagctcaaatgacagatgacgacgaggattctgtggttgaatcaccaatatatcaaaattatcctggtcacaatgagatatatgtgactgaaaaacaagcatatgatgaagaagctggtgttgcaaccttggaagattatcagacgataaatttttgcaggaggaaggtcttgagtgatgtgtcaaaagcatgtcctgatgaattgattgataataacagtagttgtggtcacaatattcagcctctagacagacatcattcaaatgaagtgggtaaccatgatgttgaagataactcttgtaccactgatgcagctggggcttcttcagatacaccacaggtaaaaactggatgattgtaaacactgggcaagtcattttgctggtgttggcattgacagtgggcatgattttgtgatggagccatctaatggtaaagaatgggatatgggagggtacttgagctgtcctaagaatgaagttgatttgttaccaacttgctctatgattgaggaagtgtttggagacgaagcctggagttccaagcacagagatggtcacagtttaagcaagcattgacctgttgcatatgatacccgtttattttttgccgttggatcatccttggaacacttcttgcaaaagtgagatccatttttacttgtatattatttagtggtgaaaggacagagcatgttagggataaaagttgagattttcgaccttgctcttggttgttagtaggaagctgttttgaggtaggcggttaggattaatttatatgtaaattatatggccgagttgagccatctttcgacaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43210" stop="41384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42910" g_stop="41684" g_length="1227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1227" r_length="1227" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-U326618" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42910" e_stop="41684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTCAGATACACCACAGGTAAAAACT-GATGATTGTAAACACTGGGCAAGTCATTTTGCTGGTGTTGGCATTGACAGTGGGCATGATTTTGTGATGGAGCCATCTAATGGTAAAGAATGGGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</genome_strand>
        <mrna_strand>AAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGG-TTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTCAGATACACCACAGGTAAAAACTGGATGATTGTAAACACTGGGCAAGTCATTTTGCTGGTGTTGGCATTGACAGTGGGCATGATTTTGTGATGGAGCCATCTAATGGTAAAGAATGGGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333237" ref_strand="+" ref_description="SGN-U333237        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tttttccccaaaatcaatttctcatcttctacccctttaatcgaccttgatttttcttcttgaagatcaaatcaacctccgatacttctaattcgtttcattctctatcgattggtacctcttttggatctatccgtctggaaatcgaattccgagttaaatatggtgcaaaaaagaccatacagtgaagaaaagttgtatgaggtttcatctaagcagccgagacatgtagaaccgagtactcagctagtttcctttttgcagtttccgtgtgaatcagtggctcccaactcttacacttcaggtggcgatgaggagaaattttcagaagtcagagcttttagtgagaaaagacctgatagttgcgatgtgactgctgtccctgtttcttcagagaaagcaattgagacgagcatccatggctctgcttcaaactcttcttggacctctagtagcaccagcgaagaagacattaggtccgaggtgccttttcatgtattgacggcttctaaatattacagtagtgatcctccattccgagttgttattcatccaatggaggtctattcccctcttttcaacaatcctcctcggaaatcggctgcccattggaccagatttccaagccgaattaccagaatgccgtgcatatgatagtaaaaatatatccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45341" stop="42769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45041" g_stop="44886" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44885" i_stop="43801" i_length="1085">
            <donor d_prob="0.687" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43800" g_stop="43653" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="304" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43652" i_stop="43437" i_length="216">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43436" g_stop="43069" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="673" r_length="369" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-U333237" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45041" e_stop="44886"/>
          <exon e_start="43800" e_stop="43653"/>
          <exon e_start="43436" e_stop="43069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAGGTTAGGGTTTCAGATCTATAGGTTTTTTCATCAGATCTGTTCGATCTACCTTTATTTCATGAAATTAATTCAGTTTCTAGCTTGATTTTGTTATCATCTCTTGATTTCTTGAGAAAAAAAAAGATCGATTTTTTTTTTATTTTGAGGATTTTCTTGTTATATCAGCTTTTGTTCGTGCTCGATCTGCGATTCGTCGCTTCATTTCTGATCGATTTGATTATTTTTTGAATTTTTTTACATCGAATTCAAATTTGGGGATCTAGGGTTAGGGTTAGGTTTCTTAATTCATAAAATTGTAATTAAATCATTTTAGGTCACGATTTCCAGAACAAAACCAGTAAAAATACGTCCGATTTCCTGATACGGACTGTCGATTGATAGTAATTAGCTCAAAATCAAAGATCTCATCTTTTTAAAAAAAAAATTGTTTATTAAATAAACAAAAATATATATTTTTTAATATTTTAGATTTTTACTTTCAAAAACTCTGAGCCACTCCATTTTCACTGTACATGTGCCACGTGTTACAAATTAGAAACTTATACAAATGATTACTATGTCCTCTACCTCTTGAGTGGCAACCTTTTCAACTATTACTTTGATTCTTTGCTTGAAACAGAGTGAACTGTGTATCTACTTGAATGTCCAACTGTGCTTTGACAATTTCTAGTCTTGTCTACATTTGTTCTTTATTATATCATATGGGGTGTTCTATGTTGCTACTTCCCTCAACATACTCTCTGAATTTTTTCTCTTGTTCTTTATTAGTATGCTATTGATAGTTTAGTATCTGTTGTTGTGCAGTATTTTGTAAGTATCTTTTTTGGGGGTTATGGAAGTTATATTTCTGTAGTTAGAAAATATCAATTTTGTGGTTAGCTATGACCAAAAAGATTTCATTTTTGTGTTCAATGCTGGATGTTGTGTCTACATCTCTGTCATGTACTTTTTGTGTTTGCAGAATGCTCTGGATACCGTTTGTGTTTTATGGAATTGTTTGCGTTCTTTGAATTCATGGAACTTAATTCTCCTCCACTTTCCCTTTTCTGAATCTGCTTAACACCTTCTTCAACTTCCTTTTGCAGTTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAGGTTAGGAAGAGATTAATCTATCAAATTCCTGAAATGATTTACGTTGTTTTAACTGCTTTGTGGATAATGGTTAGAATGGTTTTATTTACTCAAACTTAAGATACTCTTGGAAAACAGCTTCTCATTAGGAGGTTGCTCTTTTAGCAGCACGTTTGGATGTTGAATTAATTTGTGGATTTTCATCCTTGGATGATCTAAATTTTTGGTCTTTGGTAGGTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGG-TTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATAGTAAAAATATATCCGTG</genome_strand>
        <mrna_strand>TTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAG........................................................................................................................................................................................................................GTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGGCTGCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGCCGTGCATATGATAGTAAAAATATATCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324399" ref_strand="+" ref_description="SGN-U324399        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | UDP-glucose 6-dehydrogenase, putative, very strong similarity to SP:Q96558 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase family NAD binding domain, PF00984: UDP-glucose/GDP-mannose dehydrogenase family central domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase family UDP binding domain | chr3:11268328-11270465 REVERSE | Aliases: MUO10.18(evalue: 3e-98, score=354) genbank/nr: gi|77554940|gb|ABA97736.1| UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain, putative [Oryza sativa (japonica cultivar-group)] (evalue: 2e-99, score=364)">
      <seq>ctgtgaatgcaatggtctcaaagaagttgctaactactggaaacaagtgattcaggtgaatgactaccaaaagaatcggtttgttaaccgagttgtctcctctatgttcaacacagtttcaggcaagaagattgctatccttggatttgctttcaagaaagatacaggtgacactagagagacaccagcaattgatgtgtgcaaaggcctattgggagacaatgctaacttgagcatatatgatccacaggtcactgaggatcaaatccgaaaggatctgtcaatgaaaaagtttgattgggataatccaattcacctccagccaatgagccccactgtgatgaagcaactcaatgtagtatgggatgcttatgcagccacaaaaggcgcccacggcctctgtcttttgaccgagtgggatgagttcaagactcttgatttcaagaagatttatgataacatgcaaaaacctgcatttgtgtttgatggaaggaacattgttgatgaacagaagctcagagaaatcgggttcatcgtctactccattgggaaacctttagatggatggctcaaggatatgcctgctgtggcataacccccctggaataagcactgaacatgagagcaaaatctatttatatttttccagtttttgttttttccattcaagcttacaattgttgtttcctagtagcattgttaaaaatgcttacctttatatcatgttttttttgtgtgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48998" stop="47657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48698" g_stop="47951" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-U324399" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48698" e_stop="47951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCATGTTTTTTTTGTGTGTGAACTTCAG</genome_strand>
        <mrna_strand>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTTTTGTTTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCATGTTTTTTTTGTGTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318489" ref_strand="+" ref_description="SGN-U318489        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | biotin carboxyl carrier protein 1 (BCCP1), identical to biotin carboxyl carrier protein of acetyl-CoA carboxylase precursor (Arabidopsis thaliana) gi:9759121:dbj:BAB09606 | chr5:5360812-5363129 REVERSE | Aliases: MQK4.12, MQK4_12(evalue: 5e-41, score=165) genbank/nr: gi|12006187|gb|AAG44776.1| biotin carboxyl carrier protein subunit [Glycine max](evalue: 3e-45, score=185)">
      <seq>gggcgattggcggcaaatcggccgaattgatctgcctctgccagcttaaatcgcatcgtcccccttctccctcgtgtgtatcgcccccctcccttttctccaatttcggattttcccctgctaaatctcatcaattttaccgtccaattctcttctacaaaaccccccatcaagctcccaatttccctcatagccatacagacaaaattacaatattttcttgaaaaatctggcaatggcttctttcagtgtcccttgtcctaagatttctgtcctctctgttgcttcatcatccaatttaagctcgacccatcagccccagagctccctttccttcagatccggtcctgcattgctccctcgtattcaggggtccagtcgcatccaatctcaggtgtttaaggtgaatgcccagctgaatgaggttgctattgacaagtcgaacaattcaaaacctgtctctgagaaaagcttggaggaagtctccaagactgaatacagtattccagatgcttcatccattcaagcattcatgtctcaggcagctgatcttgtggagcttgtggattcaagggacattgtggagctgcagctaaagcaaaacaattgtgaaattcttataaggaagaaggcggcattgccccagccgcctgtttatatggccccaccatctgttccacaggcctttgttcagcaacagttgcctcctgcaagtgcccctgctcctgcagctccagcagttgctgcacttcctccacctgcaccttcaaagcctaaatcctcacatcctccaatgaaatgtcccatggccggaacattctatcgatcacctgccccaggggcagcaccttttgtaaaggtaggtgacaaggtccagaaagggcaagtcgtctgcattattgaggctatgaaattgatgaatgaaattgaggctgatcaagctggaaccatagttgacatagttgcagaggatggtaagcccgttagtgtggacacgcctctatttgtcattgaaccatgatagaaagaagtaatcttggtgtgcaacataggtggatgaagcagagtgaaattcaaaagttatagagagcaaatctgtcttaagctcaaggcatatctgctcagaagattggttcactattactcttgttgaaatctatgatcatatttatagcttgtattactcattttccttatgctgctcataaattttggaactatattttctttataaagttgtgacttgatgataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55820" stop="59083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56120" g_stop="56460" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="370" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56545" g_stop="56598" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="424" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56836" g_stop="56969" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="558" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57063" g_stop="57363" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="859" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57926" g_stop="57997" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="931" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58378" g_stop="58443" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="932" r_stop="997" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58528" g_stop="58783" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="998" r_stop="1253" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1254" polyA_stop="1271"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-U318489" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1224</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56120" e_stop="56460"/>
          <exon e_start="56545" e_stop="56598"/>
          <exon e_start="56836" e_stop="56969"/>
          <exon e_start="57063" e_stop="57363"/>
          <exon e_start="57926" e_stop="57997"/>
          <exon e_start="58378" e_stop="58443"/>
          <exon e_start="58528" e_stop="58783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAGGTTTGTGTTCCCTTTGAGAGGTTAATCGTAAAGATTGAAGCTTTATCATGCATTTGGCTGAGTTTAGTGTGTTTTGTTTTTCAGGGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAGGTGATTTTATATCTCTTGGTTGTTTCTTGGAATTTTGTGTGTTTAAATTATTAGTTTCATTGTGTGAATTAATAGAGGAGGTTGCTGTGGGATGAAAGATAACTAAGAATAGTTTAGCTATAACGAATCCTTATATGTTCTGATTTGATAGTAAGAAAGAAAATGAGACAGGTGATTTATATATAATTTGATTTGGTATTGAAGCATAGTTGATTGATTGAGTTTTGTGAATTTAAGGTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGAGTGCGTTAAGCCCTCATCACCTATAATTTTGTTTGTTTTCTGGTCTTTTTGTAGAGTTCATTTTTAATTTTTTTTTGCCTTTTTTGTTCTTAGGCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAGGTAAATATATACATTGGTTTCACCTGTGAATACCTTGTGTTCAATCGCTCCATAATCCAAATTTAGTAAATGAGCAATTAAAAAAAAGTGGGGAAATGAAGAATGAAGCAACTATTAACAATTGTTAAGCAATTAAACTTGCACAGTTGATTTTATAGTTTGGAAATGGAGTTAATTTGTCAGAGCGGGATGGATATTTGCTGTTGTTGCCGACTGTTATTTCCTGTTTTTCCCTCTCTTTCTTTCCTTGATTATCATTTTTTGGGAGCAAAAGACTGGGAGGTCTATATGGAGATCAATTTTTTCATGTTTTGCACTCTAGCATGTCCCTGAATTCCTTAAAATTATGTGAAATTTGGCATTAAGTTTTGGGTTAGTCAAGAAATCAGAGAAATATTTAGTTTAGGGCAAATTCAATTTCATGCTGTTCACATCTTCTAGCAATCAAAGTGAGAATGTTTGCCACTGTGTGTTTGCTTGCAGCTTCTCTTTTCTCTTTACCTCTGTATGTTCTTGGTCTTGTTGTTTTCTCATGAGCCTGACTAAACTGGTGAATTACCAGGTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAGGTAATTCTGGATTACGATTTCAGTTCCTTAATGTGCAAACTTAGTTTATTGTTGCTTGCAATATATAGCTTCCTAAATAAAAAGGCGAATATGATAGGGTAGAAACATTTATAATCAGATAATTCGTAGTGCGGAACATGTTTAAGTGTTGTACTTTCAGTTTTCCTTTTCTGTTGCATCCATTCTCATGGTAATAGACGGTAGGAATGACTTAAATAGGCAAGTGATGTGTCATAAAGAGGAGCTCTTCTCAACATTTCCCATCTTGGCGAAGTTAGTGGCGAAATTATCCGATTTGCTTAGGCCACTCTCGCACCATGATGTATTAGTCTTAAGTTCCTTTTATACCTACTGCATTTATTTTTTGAATTCTTTATCAGGCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACGGTATGTCTCTCTTTCTCTAGTTTATATCTTTAGACTAGTTCGGGTCTACTTGTGCTTTATGTGATGTTCAATCTCTTCTTGCAGCCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</genome_strand>
        <mrna_strand>ATCTGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG....................................................................................GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG.............................................................................................................................................................................................................................................GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA.............................................................................................GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCCCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGACAAGGTCCAGAAAGGGCAAGTCGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG............................................................................................................................................................................................................................................................................................................................................................................................GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG....................................................................................CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331862" ref_strand="+" ref_description="SGN-U331862        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:2549433-2554670 REVERSE | Aliases: F13G24.2(evalue: 3e-32, score=135) genbank/nr: gi|15241481|ref|NP_196415.1| expressed protein [Arabidopsis thaliana] gi|11357396|pir||T45623 hypothetical protein F13G24.180 - Arabidopsis thaliana gi|6562312|emb|CAB62610.1| putative protein [Arabidopsis thaliana] gi|10176732|dbj|BAB09962.1| gene_id:MXM12.22~unknown protein [Arabidopsis thaliana](evalue: 2e-30, score=135)">
      <seq>ctagagctgctaatagacttactgaaaaggttatagaagacattggttttaatgaggaaggggccccaggggttaaagctaaaagaagggctatattgaccactcagcttatgcagcaactactcccctctccccctgcagcaattctttctgcagaagctaattcagagtatgagagtgtgggttactccatctctagatcgtcattgggggatgcatgtagcatgctttcttgctcaaatgctgatcgtaatatgccttgtgatgacaaagaactgcttcccaaagggtgcattacttctcagaggattaataaacatgattttgccaaaacattggaagagttacagggaagagcgaggagattggaaagtgattttatgagactggacaagagagcatcggtattagatgtgacagtggatgggcaagaccaagagaagttcggcgttattaatcggtatgctaggtttcttggtcgggcgcaatatgatggtattcctcagagatacgtcacagcgcttccaataccaaaagatctgcctagtggggtgcactgtctttctctataatcacaaatcaattgaatcttttctgtgctctgtcatcaattacctcaacttcccgtagacatttttgtcctagtcatgtactagttctagcaagagcaaaatagaaccacacaatcagtattgctgaacatactcaattgtcatctcagatggaacgtagctgtccaatcttttgcatgtaggccatttatgtcattatcaagaaaatatacatgtacatctcttcaaacttagtgaggggaggtgaaactagggtgccccatcattttttgccagaagtggggagagaatacatacttctgtgcttttaagctgttgacatacagttggccatcattatgtataagagatgcccaggcgctcataattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75410" stop="70890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75110" g_stop="75082" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75081" i_stop="75002" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75001" g_stop="74754" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="277" r_length="248" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74753" i_stop="74667" i_length="87">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74666" g_stop="74559" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="385" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74558" i_stop="71748" i_length="2811">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71747" g_stop="71191" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="942" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-U331862" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75110" e_stop="75082"/>
          <exon e_start="75001" e_stop="74754"/>
          <exon e_start="74666" e_stop="74559"/>
          <exon e_start="71747" e_stop="71191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGCTGCTAATAGGCTTACTGAAAAGGTATAATGAACTGACTGCTATAATCCTCCTGATTTCATTATTAGTTGCCTTACTTTTAACAGCCTGTACTTCTCTCTTAGGTTATAGAAGGCATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGCAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACTGTGAGTTCTCTAGTTGCATGAGATTATTCAACTGTCTTTTGTTTTTTTGTTCTTCTGATCCTAATGATACATTTAATGCAATTGTAGGCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAGGTAATGCTTGATGTTTCAGTTTCAGTTTCTATATTTTTTCTCCAGTTACACCATTTTGCTGAATATTGTTGATTGCGCACGGCTATAGGCCTATAGCAGATGAGTTTCTTTACAGCTTGTTTTGATGGTTGTTACTTATTGTATTGTTTTGTATTATAGAAAATAATAATTAGAGGGGGCATACAAACAAGTGATAACTAATTTTGCAAAAGAGCAATTTTTGTGAGATGCAATGGTAAATAATATTTTAAATTCGATACTTGAAATGAGCTAATGTCCATGTGGGTGCACATGCTAATTCTACAAATTATATTTCATGATGCAAAGTGAGCTGTTGGTTAATGTTATTTATTAAGTAATACCATATTTTTTTTCATTGAGCTAGCTAAATAGGAATATCATTCATTATTTTTGGTAAACTTACACTTTTTTCTTAATCTTTTTCTTTTTGAATTTCATCGATCTATATTTTAAATTTTTGTTTTAAAGTCAAATACATTGTTTTTGATAGTGATACTAATGTAACTTAAAAGAAATTGTGCAGTCATTGATATGGATACTTGAGCTAAATTGACTACCTAAATGGAATTAACATTCATCATTTTTAAGGAACTTAAACTTTTTCATTTGATTTAAGTTTATTTTATAGCACAATACATAGTTCAATATATTTATGAGTTTTTTCAAATATATTCATTAATATAGGGTTCATGTGCAAAGCGATATTGAAAAGCATGAAGGCAGATAACAAAATTTTGTTCATCTTTTTAACCCCTTAAATTTGATCTCACACTTGATAAAATAGTAATTTAATTATAACCCTAATACTTAGGACTTTGAGATCAACTAAAATTTGATATTAAATCATTCCTTATTTGAACTAAGTAAGAACTCCTATTATTTAGAAATTTATGATCATGCAAGAGTTTTACTTGAACAAAAGTTTTCCTTATTTCCTGCTTCACATTTAATTTGCTTTTTAAGTATCTTACGTCTGAGTTATTTATGATTTATTTTATATTAGTTTAGTTTTGGTTTAAAATTAAGATTTGTTGAGTCCAATTTAAAAAGTCACATCATATCTAAAGAATGCATCTTCTAATAAGCTGCTAATTTGGGTATAAACACTGAATATTAATAGTCTCAACCCCTTTCCTAATATGGATATTTATTATTACTCTATTCGTATAATTAGTAAACATTGCTAAATATTTTATTTTTTGTAGTATCTCTCTAATAACATTAAATTCATTTAAAACATTATAAAATATTGATGTTCAAAAGAATTATAATTTGAATTGAATCTCTTGACCTCAACTTCAATTGTGTTGGACCTAAGATTGAGTATTGTTGACTCGCATCAGCTAAGGTAGCCTGCTCGTTAATCACTTTCCCTGCATGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAATTGTATATTTATTCTTACCACTTGCCCTGCGCGGTCAACTCTTGTCAATTTAATGTATTTGAGCTAAATTGTATATTTATTCTTACATTGAGATTACCTATTAATAGTGGTCTGTCCCTGCATTAGCAATTGATACATTATAATTGGATAAGTTATTAGAAATATGATTTGATGAAAGACCAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACACACACATATATATATATATATATATGTATATATGTATATATATATATGTGTGTGTGTGTATATATATATATATATAAATATAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGGATAAGTTATTAGAAATATGATTTGATGAAAGACTAAAGAAAGAAATAAGAATTTTCCTTGTATCTTTTCTTTCCTTAGTTTGACACAATTTACCTCTTTGTCAATAGACTTCATATATATATATATATATATATATATATATATAAAAATTGATATTGATATTGAATTATAACATTCTTATGAGACGCAAAGGAAGAAGCTATAGGTTGACTATTGGGGTCAAATGTTTGTGTTGTTCGAATTTATGTTCTTTGTCAATATTTAATTATAGCATTTCGTCCTATTAGTGCTTGCATAATATGTTGGAGGTTCTGTATGTCATGATTTCTTCTCCTTTATTGATCTAACTAATATGGTAACATTTCTTTTCAATTAATGAAGTTGCATCTACTTAGTGTCATTTTCTATTTTTACATAATTCACTTTTCTTATATACAATCTTTTTAGTTGACGCAATACACCCATGTATACTGAAACTAGTTACTAAATAAAGCTTAATTTGTTAATTATGTAGATACTACATGTAGTGCTAAATTTTAATGATGGATATGTAAATCTAAGATTTACAAAGAACAATTTCAGAAATTCAAGGTTTACTTTGAACTGTGATGGCGCTTTTGCTTCTGATTTTGCACCTCTAAAAATATATACAGCTGATGATAGGTCTTAAACCATGATCTTTCACTCCATTAGAAAATGAGGGCAAAGTGCTAACTGTACTTACTGGTTGGTTACGTATAAACTTGGATTTTTTATTAGGAAATCCACACTTCTCAAGTCTTAAATGTCTACTGTCATTTGACTTGCTATTAGTTTTTGGACATTCATTTTATCTTTTGATGTTTCAGTTTTACACTTCCCATTATATTATATTAATACTGTCTGCTTTACTAGCTTCCTTTTTTACCTGAAAAAGATATGTTAATTCTGCTTGATTAGTTTTGTTTGCTTTCTAATTTGTTCCTTCTCTGATCAGACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATCAATTACCTCAACTTCCCGTAGACATTTTTGTCCTAGTCATGTACTAGTTCTAGCAAGAGCAAAATAGAACCACACAATCAGTATTGCTGAACATACTCAATTGTCATCTCAGATGGAACGTAGCTGTCCAATCTTTTGCATGTAGGCCATTTATGTCATTATCAAGAAAATATACATGTACATCTCTTCAAACTTAGTGAGGGGAGGTGAAACTAGGGTGCCCCATCATTTTTTGCCAGAAGTGGGGAGAGAATACATACTTCTGTGCTTCTAAGCTGTTGACATACAGTTGGCCATCATTATGTATAAGAGATGCCCAGGCGCTCATAATTG</genome_strand>
        <mrna_strand>CTAGAGCTGCTAATAGACTTACTGAAAAG................................................................................GTTATAGAAGACATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGTAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACT.......................................................................................GCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTGGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATCAATTACCTCAACTTCCCGTAGACATTTTTGTCCTAGTCATGTACTAGTTCTAGCAAGAGCAAAATAGAACCACACAATCAGTATTGCTGAACATACTCAATTGTCATCTCAGATGGAACGTAGCTGTCCAATCTTTTGCATGTAGGCCATTTATGTCATTATCAAGAAAATATACATGTACATCTCTTCAAACTTAGTGAGGGGAGGTGAAACTAGGGTGCCCCATCATTTTTTGCCAGAAGTGGGGAGAGAATACATACTTCTGTGCTTTTAAGCTGTTGACATACAGTTGGCCATCATTATGTATAAGAGATGCCCAGGCGCTCATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338170" ref_strand="+" ref_description="SGN-U338170        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-06, score=56.2)">
      <seq>tttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcatcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggtacttttccaccacctcagcaagcttttggctctcagtatagcaaggattcttctcatattttccaatcacatcaaatgaatattgtggagtcgtcattatctgctcctgggaggcaaagtgatcaatacttgaatagaggtagttttgcatcccagattggtactagctcagtgaattccctggtttcttctgaaggggaagaacagcgaccaaaggaaagtcattctcagcaaatatcagtgacaaatgttgaccacatccagaagatgaatgattcacagggtagagaaccttttatcaagtatatcttgggaggatctgctgcaaatgctgcatctatgcagagagatattgaagcctttggccgaactttgaagcccaacctttcaaatcagaactattccctattaaaccaagtgcaggctatcaaacatgtggaggtcgatccaagcaatagggacttcaagagaatgaaagtagcagacagcagtacaggtgctccacaattttcttctggggacactgaaatgttgggagtctctgtgccagaggatttgcaaagaagcatttcatctcaacaagggagaaaaatgtctcctcatgatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76765" stop="75447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76465" g_stop="75747" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-U338170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76465" e_stop="75747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTGAAGCCCAACCTTTCAAATCAGAACTATTCCCTATTAAACCAAGTGCAGGCTATCAAACATGTGGAGGTCGATCCAAGCAATAGGGACTTCAAGAGAATGAAAGTAGCAGACAGCAGTACAGGTGCTCCACAATTTTCTTCTGGGGACACTGAAATGTTGGGAGTCTCTGTGCCAGAGGATTTGCAAAGAAGCATTTCATCTCAACAAGGGAGAAAAATGTCTCCTCATGATGTACT</genome_strand>
        <mrna_strand>TTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTGAAGCCCAACCTTTCAAATCAGAACTATTCCCTATTAAACCAAGTGCAGGCTATCAAACATGTGGAGGTCGATCCAAGCAATAGGGACTTCAAGAGAATGAAAGTAGCAGACAGCAGTACAGGTGCTCCACAATTTTCTTCTGGGGACACTGAAATGTTGGGAGTCTCTGTGCCAGAGGATTTGCAAAGAAGCATTTCATCTCAACAAGGGAGAAAAATGTCTCCTCATGATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325209" ref_strand="+" ref_description="SGN-U325209        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:2533758-2540422 FORWARD | Aliases: F13G24.140(evalue: 8e-09, score=58.5) genbank/nr: gi|15241462|ref|NP_196411.1| expressed protein [Arabidopsis thaliana] gi|10176728|dbj|BAB09958.1| gene_id:MXM12.18~unknown protein [Arabidopsis thaliana](evalue: 6e-07, score=58.5)">
      <seq>tcacattcacctaataaagctgcggaatctagtccaaacatgctacagcttattcagaaggtggaccagtcgagagagtgtggttccggggcagagttaggtcattctgaaaaaaaagcatcatctaggatgcctgaagcagcagagaattctgatgagtctgttggtcatcacctgaggagtcagtctgctttctctcaaggctatggtctacaacttggccctccatcccgacgtgcatcagtccgaacccattctttgacatctcagcgcccgatccaagcttttagctcttcacattatagtcatgctactgttgacactggtgagaagaatcaaggaccaatgcacccccctcatcaggctccatccgtactttcaccttctgatccatcccaggaaggattgaagaatataggatttggtattgcaggaagtaccaataatgtaacttctatgtatgcaatgcccggaaacctttctccagcgtttgattctcattctggttttccctataggggaggtcagcttaaaattccaaatgtggctaggactactgcacaactcccaacaaatcaatccttgagtgtatcctttgataagcatgcttcctctcatacagagaaaggtgactcttgcagaggatctgcaaatggtcagtctgtggaggcttccttgctggctggggctgacaagttgcaagataagcctattctctccgcagacaagtctcaattgagtaacaccaatcgtacagtggaaagtatctttaccaatcaagttacatcccaagagccagtatcagtttctcaggcgttagtgtctggcatcggtcagcagggtacgtattcaaaaatgtcatccggtatatggggtacttttccaccacctcagcaagcttttggctttcagtatagcaaggattcttctcatattttccaatcacatcaaatgaatattgtggagtcgtcattatctgctcctgggaggcaaagtgatcaatacttgaatagaggtagttttgcatcccagattggtactagctcagtgaattccctggtttcttctgaaggggaagaacagcgaccaaaggaaagtcattctcagcaaatatcagtgacaaatgttgaccacatccagaagatgaatgattcacagggtagagaaccttttatcaagtatatcttgggaggatctgctgcaaatgctgcatctatgcagagagatattgaagcctttggccgaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77734" stop="75683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77434" g_stop="77403" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77402" i_stop="77202" i_length="201">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77201" g_stop="75983" g_length="1219"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="1251" r_length="1219" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-U325209" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1251</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77434" e_stop="77403"/>
          <exon e_start="77201" e_stop="75983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTCACCTAATAAAGCTGCGGAATCTAGGTAGTTAATTTGCTGATTCTCAGAACTATTAGCAATGGTTATGGATACATTTTGATAGATCCTGTACGATTTAGATGTTCTTTTGTACGTATCTTTACATGTGTATTAAAACCTTGTTGACGGTCAAGTTGAGCTGTATAAACTACTTTGCGGTGCCTTCTCTTTCTGGCTTCAATGTTTAAACTGTTTCTATTCTTGCAGTCCAAACATGCTACAGCTTATTCAGAAGGTGGACCAGTCGAGAGAGTGTGGTTCCGGGGCAGAGTTAGGTCATTCTGAAAAAAAAGCATCATCTAGGATGCCTGAAGCAGCAGAGAATTCTGATGAGTCTGTTGGTCATCACCTGAGGAGTCAGTCTGCTTTCTCTCAAGGCTATGGTCTACAACTTGGCCCTCCATCCCGACGTGCATCAGTCCGAACCCATTCTTTGACATCTCAGCGCCCGATCCAAGCTTTTAGCTCTTCACATTATAGTCATGCTACTGTTGACACTGGTGAGAAGAATCAAGGACCAATGCACCCCCCTCATCAGGCTCCATCCGTACTTTCACCTTCTGATCCATCCCAGGAAGGATTGAAGAATATAGGATTTGGTATTGCAGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTG</genome_strand>
        <mrna_strand>TCACATTCACCTAATAAAGCTGCGGAATCTAG.........................................................................................................................................................................................................TCCAAACATGCTACAGCTTATTCAGAAGGTGGACCAGTCGAGAGAGTGTGGTTCCGGGGCAGAGTTAGGTCATTCTGAAAAAAAAGCATCATCTAGGATGCCTGAAGCAGCAGAGAATTCTGATGAGTCTGTTGGTCATCACCTGAGGAGTCAGTCTGCTTTCTCTCAAGGCTATGGTCTACAACTTGGCCCTCCATCCCGACGTGCATCAGTCCGAACCCATTCTTTGACATCTCAGCGCCCGATCCAAGCTTTTAGCTCTTCACATTATAGTCATGCTACTGTTGACACTGGTGAGAAGAATCAAGGACCAATGCACCCCCCTCATCAGGCTCCATCCGTACTTTCACCTTCTGATCCATCCCAGGAAGGATTGAAGAATATAGGATTTGGTATTGCAGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTTTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319191" ref_strand="+" ref_description="SGN-U319191        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | transmembrane protein, putative, similar to GB:AAB61079; contains weak similarity to the SAPB protein (TR:E236624) (Arabidopsis thaliana); similar to seven transmembrane domain orphan receptor (GI:4321619) (Mus musculus) contains 7 transmembrane domains; | chr3:1389455-1391681 FORWARD | Aliases: T9J14.4, T9J14_4(evalue: 9e-99, score=357) genbank/nr: gi|18397089|ref|NP_566244.1| expressed protein [Arabidopsis thaliana] gi|15028251|gb|AAK76714.1| unknown protein [Arabidopsis thaliana](evalue: 7e-97, score=357)">
      <seq>gcaacttctccttcgaagttcgatctaccctcctccgattgcttccatttcacgtcggacctagggttccgatgatctcatccacaagttttcaatgcctttgattttctattctgcgaagaatgacaaattttagtggagcattttccattactgaagcttcatctcccaccgaagcaggtccggcccgaaccggaaccggaactgccggtagagatgacttcatattccggttgtccagctcagcaactgcgtgccatgggttctggcacgatgtgatactggtattaccatcggttttgttcgtactgtacttagggtttcatgctaggagcaacattaagaagctcagtcatcgtcggtcttttgtaatgattggatactatggacttttgtggtttgctgttcttttaaacctttgttggtgctttcttcaggcatggcagtgcactccagggaagcaggtggcttggaatcttttatcgttgtttgcaacgtctgcaatgctatttctggagattagcatagtggcattcttacttaaggagaattatgcgagctgtttggaaactttatcacgtactttcatggtttcaggcctttttgttggcgtggatttactattaaaggcaatttatatatttggacttggtattccacttttccttgacatggaaatagctgatagggggaagtggcgtgtctggagcaccaacaagcttcttcttactgcagcttatggctacatattgtttgtgcatttctcaaagtggagagataagctgcctccacgtccagccttttacaattacgtcatcgtcatgtttgtgacaagtgctgtaatgttatttgcctgtgggcttgcaggcattaggggtggctttggactttggttgtataatttgactgtagtttgttatcactcgctttatcttccatttctttacgtgacgttcctggctgattttttcaaggaggaagattggcttctggacagcgcatattactcagagatgaaagatgcagggttttttgatgcagacggggagtaagcttgtaaaactgtagacaaataagcagtcccaacatgtaattgtaaatattgactggctggtattatgagaaacaaaactaatagttattcaagtgattgcattgtctagcttatttgctggttgagatcattgatccacttggcaaaagtataagaaagaacaactaaaatgttattgtaaagatatgtatttttgaatagaccatgctggctaaatatttgggttgaaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="+" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92834" stop="97814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93134" g_stop="93570" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94985" g_stop="95176" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="629" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95177" i_stop="96590" i_length="1414">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96591" g_stop="96750" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="789" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96850" g_stop="96952" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="892" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94">
            <donor d_prob="0.088" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97047" g_stop="97128" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="974" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97129" i_stop="97201" i_length="73">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97202" g_stop="97510" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1283" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1284" polyA_stop="1302"/>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="+" ref_id="SGN-U319191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1283</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93134" e_stop="93570"/>
          <exon e_start="94985" e_stop="95176"/>
          <exon e_start="96591" e_stop="96750"/>
          <exon e_start="96850" e_stop="96952"/>
          <exon e_start="97047" e_stop="97128"/>
          <exon e_start="97202" e_stop="97510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTTCTCCTTCGAAGTTCGATCTACCCTCCTCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAGGTACTTATGACATTAGCTCGACGGTATTTATTTCCATGTTATATTACACTTGATAATTCATTCACTTCTTAGATATTTCATGATTTGTGTGGTAGTATTTGTATGTAGTTTCCAGATATGTGAATCTTATTTTCCTAAAAAAGAGAGGCAAATTTATGTTGGAATTGAGATCCTTCTCTTAAGGCAATATTGTGAAAGTTGACATTGGTTGTCCTGCTGGAGCTATTAAGGAGAGCTGATGGAGAGGAGTTCTCCTTAAGCTGGGGGTCGCTGGCTCTAGTTATTGGTTGGCAGAGGGTGCTTGGAATGATTGGGTATTTCAAAATTTAAAAGGAAGAAGATTTTCTTTTTTGATTACCAAACTCAAGCTACGTCGTGATTGTTACTATTTTGGGTAAGCTAAACATGGTTGTAACCTGACATATCTAATCGATTCTCATCCCAAAATAATGAGAAGTATTGAGGATTTGACTCTGGTTTCTGACTCATCAACTCATGTTGGTGCTACGACTTCCCCACTCAAGGGTGGGGCGTAGCAGTTGATGGATTTGGAAAGAAGACCATGGTTTATCAGGCTTCCAATCCCAGTCAAGGCATTAAAGTTCCATTAGGGTGGGAAGAGTTTCTAGGTAGATGTATTGGCGGAAGGATGCAAATACGTGGTGAAATAGTTAAGGTCCACTCTTATAGAAGAAAATGGTGCTATTGACTAGCTAATAGAGTATTATTTGCATTGTCTTTGAGATAGAGTTGAAAGGATAATTAGAGAATACGTATATCTAAAAAATCATGGTGATCGAACCCTAACTTAATCTAACCTTCGTGTTGTCTTTGTACTCCCTCTGTCCGGATTTATATGACATACTTCCCTTTTTAGTCTATCCCTAAAGAATGACCTATTTCCTTGTCAAACATTTAATGACACTATCAATAATTTACCCATGTTGGGTTCCACTATTTAAAAATTCATTTATTTTATGGTTAGTTTTGGAACATTGCAAAGTCTTCCCCTATTTTGTAAATTCTATGCCCGGTCAAACTACACCACATAAATTGGGTTCGAAGGAGTAATAAAAGACTCAAATCCAATATAGATTCTCTGATTAGCATCATATGTTTCTGTAGTCATGATTTTTGAAATTATGGTACTGTCCTTAAACAAAATCCAGCAGAAAGAGAATTGTGCTTGATTAGTGTGGTCAATCTTTTCCTCGGTCTCTATGTTATGGAATGTGATTGAATGATTGTCATTTCATGGGTGGCTTGTATCAGAATTTGGAACGCATCTTACCTTCTGTATCAATGCTGTTATGATCTACGTTTTCCTAATATTATCGAAGTCGTAAACCATTATGGTTATGTACTTCTGTTCCTTGAAATGCTATTGCATCATCTTTCCAAATTTGCAAAGCAGGCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAGGTGAAGATTTCTTCATCTTGTTTCTTACTGTCTTTTGACTAATAAAGCAGTTTACTTAAACACTAACAAATTGCACGCAGTTACAGAGAACCTGTTATCCATCCAGGGCATAAACTATATCACAAAATTGCCCCCCTGTTCAACCAATTTAAGGAATCCATTAAACTTAGTTTGCCTATAACTGAAGTCTACAGGAAAGAAACACAGAGTATTCAGCACCAGAAATGTGGTTGGATTTGTTAAGTGTGTATTTTTCGGGTAAAACTTTGGCACAGAAGTCTATTTGTTCTCATTTCATATATTCACTGTCTTGAACCATGTTCTCCTTTCTTCTACGTGTGCAGCACCTACAACTGAATTTCTATGACTTTTCCTTTTGTACTTAAGCTTAGATGAAGCAAGTAATGAGTTTGATATTTGACTCAGTTTGCTTGAGCTGATTTTTTATTCAAGGTTCTGCACTGGCTGGAGAAATAGTGTAGTTCTGCATCAGCTGCCACTCTTGTTTTCATCTTTTAAGCTTAATTGAAAATAATGTGGAAACTCTCACAGTATTGGGTGTTGTAGTTTCCAGCTTTAAGTGAGAAGGCCAATTAAATAATACATGCTAAACACACATTCAAGGAGAAGGCGATTGTAGTTTAGAGAGAAGAATTTTGACTCTGCTGTTCTTGTGTATCTTTTATAACGTGATTGATTGGTTTGAGTTTTTTTTACTTGCTACCAGGATAGACATAGGATCAAGATCATGTGCTTTTGCAAGCCATGCTAAATCTGTAGTTGCATTTCATTGGAAACCTTTGGTGCTCTAAAGAGATATTAAAATTATTTATCTCAATGTGATGTGTAATAACTCTTTGTTCAATTCCTCTGAATTTGAGGAAGGCCCTGTTCTGTTAGTTGCTGTAGAAGCTCCTCTTGTAACAAGAGAAATCAGTCTTACAACATAAGTGGCTCTTTATCCTATGAGTAGTCACATCCATCCAGGGACACAGTATTTTTTTAGTTCATCATGATTGACGAAGGTTGGATACAGTACTTCCAGACTGTTGTGCTTTTGGGACATGGATCATGCTAGTTAAACTTACCGTACTAAATAACGCAGTTGCGAGAGAGAAAGGGTGAGACAAGTAACTCATGCGTGCCTGGCTTGGAAATTTGTCCAGATAACTTGGTATATTGTTTTCTAATAATCACTTGGGTATGTTACCTAACCTGCAAAGGTGGAAACAAACAAGTACTATCCAAAAGATGTTCGAGATAGTTCTTCAATTTTACTTAGTTACTGTTTTATGCCCCAGAGTTGTTGCTACTTACGACCAAATAAAGGGTAACCAATTAATTGTAGAGAGCTTATTTCTGATTTCTTTATATGGAAACACTTATGTGCCTTCCCGTCTATTCATTTGATCAGGCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTCGTAAGTTTGATTTTTTATTTTCCCTACTTGACCACTTCCATTTTCCTGGTCCATCTCTTCGTATTAGGTCTAACATACAGTGTTTTCCATTATATGCAGCACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTGGTATAGACAAGTTTGCTTCCGTTACTATTACTCTTCCAAAATCAATAGTGTCTTTTCAACTCAATTGACATATGGGAATCGTTCAACTTTGCAGGTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAGGTAATCTACCCAGACTAGTTATTTGTTGGTCAGAAATGCAAGCATTCTCTTATTTCTTTCCTTACAACTGCAGGAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGAATAGACCATGCTGGCTAAATATTTGGGTTGAA</genome_strand>
        <mrna_strand>GCAACTTCTCCTTCGAAGTTCGATCTACCCTCCTCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC...................................................................................................CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG..............................................................................................GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG.........................................................................GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGAATAGACCATGCTGGCTAAATATTTGGGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322066" ref_strand="+" ref_description="SGN-U322066        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | Encodes a predicted protein with 30% identity with MER3/RCK. | chr5:24607225-24620740 FORWARD | Aliases: MAF19.14, MAF19_14(evalue: 4e-162, score=568) genbank/nr: gi|30697481|ref|NP_200922.2| DEAD box RNA helicase, putative [Arabidopsis thaliana](evalue: 3e-160, score=568)">
      <seq>tgaaagtagcctgagagagcaacttcatgaccacatcaacgctgagattgttactggaacaatctctcataaagaggacgctatgcattatctcacttggacctacttgtttcgtagattgatggttaacccagcttactatggcctagagcatgcagaacctgggattctaaattcttatttgtctagcttggtgcaaagcacatttgaggatcttgaagactctggatgcatcaaggttaccgaggacagtgttgaaccactgatgttgggctcaatagcatctcagtattatctgaagtacaccactgtatcaatgtttggctcaaaaataggatctgatacatcacttgaggttttcctacaaatactgtctggtgcttctgaatatgatgagctcccggtgaggcataatgaggaaaactacaatgaaaaattagctgagaaagttccatatgctgtcgaccacaatcgcctggatgatcctcatgtgaaagcaaatctgctctttcaggctcatttttcccaatcagagttgccaatcagcgattatgtcacagacttaaagtctgtgctggatcaaagtatacgtgttatccaggctatgatagatatttgtgccaacagtggatggctctcaagtaccattacctgtatgcatctgttgcaaatggtcatgcagggcttgtggtttgatagagactctcctctttggatgttaccatgcatgactgatgatctactcaactcattgcaaaaaaaaggaattgctagtatccagcagctgttggattgcccttcagaatcattacgggctatcactggaagttcagctgcctcgaaactgtatcaggatatgcggcatttccctcggattcaagttcgacttaaaattcagccaaaggaatctaatggtggaaagattttaaccttgaacattagattggaagatgcaaatactcagcgaagaacagcaaaagcttttatcccacgatatccaaaggtaaaagatgaagcttggtggttagtcctttgtaatacttccgcaagtgaactgtatgctctgaagagagtgtctttctctggtcgtttgcagacacacatggatttgccatccactctgaccaatttccaggggataaagctcattctagtatcggattcttacattgggtttgaacaagaacactctattgaaggattgacttaatctggaagaaactataccaactccagattgtaatgcaatgctcccaaaatcaggatttgactttgtatagcacaaaggctcactttttcacaatcagttatagaagttgtgttacggtctacatttgtaatgagatattgctttgtaattttcttgagtaattgatcggcatccttcatttttctttgtcatgtagatccaattgtatatatgcatcagggtactgttgaaagtcttatacacacaccctaatcaatatagagctttccattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0065P01-JJJHc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0065P01.1" temp_strand="-" temp_description="C06SLm0065P01.1  AC226016.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0065P01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105634" stop="97620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105334" g_stop="105214" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105213" i_stop="103659" i_length="1555">
            <donor d_prob="0.308" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103658" g_stop="103591" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="189" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103590" i_stop="103513" i_length="78">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103512" g_stop="103347" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="355" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103346" i_stop="103245" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103244" g_stop="103182" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103181" i_stop="102833" i_length="349">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102832" g_stop="102737" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="514" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102736" i_stop="102471" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102470" g_stop="102303" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="682" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102302" i_stop="100141" i_length="2162">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100140" g_stop="99970" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="853" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99969" i_stop="99025" i_length="945">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99024" g_stop="98875" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="1003" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98874" i_stop="98810" i_length="65">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98809" g_stop="98678" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1004" r_stop="1135" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98677" i_stop="98270" i_length="408">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="98269" g_stop="97914" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1136" r_stop="1491" r_length="356" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0065P01.1" gen_strand="-" ref_id="SGN-U322066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1491</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0065P01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105334" e_stop="105214"/>
          <exon e_start="103658" e_stop="103591"/>
          <exon e_start="103512" e_stop="103347"/>
          <exon e_start="103244" e_stop="103182"/>
          <exon e_start="102832" e_stop="102737"/>
          <exon e_start="102470" e_stop="102303"/>
          <exon e_start="100140" e_stop="99970"/>
          <exon e_start="99024" e_stop="98875"/>
          <exon e_start="98809" e_stop="98678"/>
          <exon e_start="98269" e_stop="97914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTGGTATGGTTTTGTGATCCTATGGCAGAGAATTTATTTTGTTGCTCCAAATTTATAGTCTTGCATTACCGATCAAGAAAAAATTTCAATCTTGCAGCAATGGCAATGCTAAGTTAGGAACCACCATCATTATATTAAGAGTGCTTGATGCATGTTTTTCTTTCAGCAAGTAATCATCAGTAATAAGTAGGTTACTTGGTTGCTGATTGATATGGGTTACTCATTTAAGGTAAATATATTAATATGAAATTTCTAAAGAAGATGTAGGTAACTAAGTTGTGTCTCCTACAGTGAAGAACATATAAATGGAAATCCAGTAAAGGAAATGAGTCCTTTATAATAAGGTAACACGGGAGATTTATGAGTTGATTAATTTAGCTTGCAAAAAGAAAAGTTAAGGGAGGCCACAATAGTGCAACCTTGTTCTGATTTTATCTTGCTTATGTTATCTTTTCCGGAAGTCTCAAATTTTATTTTCTAAGTAAGCATTACCAACATGTGACAACTGAAACTGGAAAAAGAAAGTGGTAGGTAAAGGGCTAATTTCAGTTGTACCATAGTGATCTTTATGGTAACATGATTTGTTTCAGATTGTGGTGGACTCCAAAATCTATATTATTGTAATCAACTAGCAGACAAAGGGAACACACTTCAGGCAGCAGCTAAAGTTGCACAAGAAAATATGTGTCTGTTTGATGTGCTTTTACAAGCTTACTGCTGCTAGATACCATCAAAGCATTTTCTATGAAAAAAGTTGGGAGAAAGTGAGGTCTACCCCACGTACCAAAGTCTTGTCAAAGTGCAAGTTGAAATAGCTCGTCAGCTTTAACCAGACCCTAAGGGATAGGAATAGCTAATCCACAAATTATGTGTAGTAATTATCTAACTTGATTGACCCTTGTTTATTTATGTAACATAAGATTATTTTAGATTCAAAATGAGAGAGCTGATTTAAAGCAATAACAATCAGCATTGAGTGGTAAAACAATGGTTTGCTTATGCTATTCATTGTATCCTTCCGCCCCAACAAATGTAGTGCCAACTGTAGGTGTTGATGTTGCATGTGTATTATTTTCCACCTTGTGGGAAAGAACAAAAGAAAAGTTACATTTCTGTGTACTGCCTGTATAGATGCCTTTTATATAGTGAATAATTGATCTATGGGTTAGTCACAATAGGGAATAATTGGTTATTCCGTGGTTCAAATGGAATTCTTGCCCTAGTGGCAAGGTCCCTCCACCTCCAGTCACTAATATGTGGTTCGGGACACTCAGAGGGAAAAGTAGGCGAGCACTGTTTCTCCTGGGAAGGGGAAGCATTGAGGTAAAGAAGGATGTTACCAATTTAAAAAAAAAAAAAAAGATAAAGGAGGAGATGATATGTCACCTAAATGAAAAGGATGAGAAGAAAGTCAATTTTCACCTCAATCTACTAATGTATTTCTGTGGATTGACAATGTCATCAAAGAAAATCTTATATGTTTGAAGAATTACCAAAAATAGTGTACTGTTCTTTCCCTGCTAGTTATTATGTTTATTAACCATAGAAGTTTTTGCAGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAGGTAAAATGAAAGCACTACATAGTCTTGAAATAGCTTTTCTTGTATATTTCTGTGTGTGCTCACATTATTTATGAACAGCTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAGGTTTGTAGAACACCTAACATGGATGTCTAATCCTTATTTCTCTATTTCAATGTTTTTAAATTATATTTCTTGGCATTACTTCCTATTTATCTTTCACCCCAGGTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAGGTAATTTTTTTAGCTAGGCAATATATATATATATATATATATATATATATATATTTGAAGACAGTTGTTGCTGAACAATGGTTTGTTGGTTTTCAACTCTCTTAATTTCTTTACTTTTTTCCCTTAGTTGTATATTACTTGCTAGTTCTAACTAGTAAACCAATAACATTGATGTCCTGGCATTACACCAATTGTTGCAGACACTTCTGAATTATTGTCTGCAAATCTAAATTAGTATCGATAATTCCGCTAAGAAATTGCCTGGATTTTGAAACTATCAAACTATGCATCAACTACTTCTTTATTTGTATGTTGTACACATCATCTGCTTATTGATCACCTATTCCAGGAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAGGTATAGGTTATGGCTTTGTCTGCTAGGTTCTACTTAAAGTCAATATATCTTTCAGGGAACAACCGCAGCCTTCGTAACCTGGGGATGATGCCCCCTCCCCCCCTCTCTTTTATCCTTCTCCACTTAAATACCAAAATTTAGTTTGCATGGCGCAGAGCTTTAACACCCCAAGTCACAAGTCCCTCAAGTTTGCTTCCTGAACTAGGTCCTGGGGTTATAATATTTTTTGCTCTTCTACTCATCCCTTACACATCTCACTTTTGCAGGCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAGGTCTTGCTACTGCTTCCAAAGCTTCCTTTATCTATTCACTGTAAAATGGACTACTATACTGCTTTTATCAACTCTTTTATACTTATTTCTATATTCCTATCATTTTCTTTTCTCATTTTGGGTTGCCAACATGTCCTTGTATGGAATACAAACTTGTTTTTTTTTCAAAAAAAGAAATAAAAGATTCACCTCGTAATGAGAGAGAGTAAAGAAAAACAACTATCAAATTCCAAATTGTTGAATATTATAATTTTTTTGGGTTCGTTTTATCATCAATTCTAACGTACAAAGAGATAAGAGTTGAGCTATGGTGCAACACAACATCACATATTCCCGTTATTTTTTCCCTGTACTTCCTGTTAAGAATAAATCTTATTCAGAGTAGCGTCCAGCTATCTAGATGTGATCTTTATGGATGTATAACATGTTTCTGTTTTGTTGCATTCTGCAAATTACTTGACCATGGAAAATATGTATATCACTATGTAGATGTTTGTTATCCAGCTTATCACTAACTCTTATATCTAGATGAAGTGAAAGTTCTGAAGTATCTGAACAAGAAAGAGCTTCTTTTCAACCTTCTTCTAGAAATTGTTTGTGGTTAGTATTATGCACCAAAATATGCTCCTTGACAAACTTTTCATAACCAACACACTTCATGCGATGTAGAAGTTGTCAGCCTAGTAATGACATATGGGAGTGAATGTTCGTCCTCCAAGTCCAATTTCAACAAGATAAATATCATAGAAATGAAGATATTAAGATGGATGTGCAGTTACAATATATAAATCAGCGTATTAAGATGAATGTATATTCCTACAAAATTTTGGATAGGATTATATAATGATAACACCAAACGAAGGGTGTAAGTAGCACATATGGAAATTAAATGAGAGGCTGCATGAAATGGTTTTGCTATGTCATGCTAAACCTCCATATGCACCAATATATAGATGTGTACCTATGAAAGGTGTGAATTGGATATATGGAAGGCCTAAAATAATGTTTTAGCAAAAAATACTGGCCCCGGCGAGGTTAAAGTGGCCCGTGACATTGGGAGGGCCATGTGACTGTTGTTTCAGATCTCGAGTCCTAGATGTGAAATCCTTGAAATTCAAGAATGGACTGGGACGACTGAAGATTCCTGAGTAAGGCTGTTTTGAACCAAGCTCCATCACAATTAGGTCAAAACCGCATATAATGGAGCTAACTCAAGTCATGGGCGCTTGGATATGTTAGAATAGGATTGTACATAGTATCATATATGGAAAAGGATTCTAGTGTAATATAAATATGGCTCAGTGCAGTAATTCAGTTCTTACATTAATTCAATATGATTTTTCCCATGATTTTACTTCTCCCAAATGGTATCAGAGCATGAGCCATCTCAATTGTCATTTCCAATGTTGGGCCTCTAATAAATTACCCAGGCACTGGCAGTTCATTCAGGATGTTAAACTTCGTATTCTATCGGGAAACCTTTAATATATTCTTTTTTTCTCTCTCTATTTATGACCATTCTCACTTCAAAGTCAAAGATTAGGAAATTCTCTTGATTTTGGATATTATGGCCTCCTAGAAAACTAGAAACGATTTAGCATAGCTCTCGCAACTATCGGCGAAGGAGAAAGTTGTCCGTAATTCATTGCCTATTTTGAGGCTACAACTGTTATGAAAATATCAGATGGGAGAAGGAGAACTAGTTCGGCAATTAGACTGATGTTCATCCCTAGGCATGAGGGGTGTGTAAAGAGTCCCTCATTGGTTGGTTGTCTGATTATGCAATCAAAGTTTTTCAGTGTTTGCGAGTATTTTATTCGGGTAAAGACTTTTTTGTCAACATAGGAATAAGTTTAAGATTTAGAGTATCTTTGTGATTTGAAAATCACTATTCTGTTTTCGAAGACAATTGTTCTAGTATTAAAACATAATTGGCCCGAATAGAGGTGAAAAGATGCAGATGATTTACACAGATCCAACTAGTTTTGGATTAATGCTAGTTGGTTGATTTGGTTGATCATTTAGAATATCTTTAAAATGATGGTTTTGAACAAGTTTTTGGTATTTTTACTAGATTTTACCCTTTATTATAAACTAGGTCATTAGCAACTGAACTTTGTCCTTGAGCATCATTTGATTATTCGTCTTTGTTTAATCTACAGGGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAGGTGTTCTAATTAGTTTTAGTAGTTGATTACGTTTTGGATAAATCATCTCTCCTGTCACTGCAATTTTTGTTGATGTATTGCATCCTAAGAATGTTTGTTTTGAACAAGCGTCAAACATCTATGAGTAGAACTTACTCCACATGGTTAGGAGGTTAGTGTGAACGGTTATGTTCTAATAAAGTTATTGCATAATGCATGTGTACCAGTATCTTACTATTTTTGTCGGCACTAAGCTATAAATCACATGTGGATTTCTTTGTAAATCAAGTTTGTATAATGATAAATGGGGAATATCGATAAGGACGAGCATATGGAGGGATATTCTTAAATTTATGATCATCTCTTCTAAAAGCTTAATCTATTAGAGAGTCACTTTTATTTACTTACGATTTCAACATGCTCCCATAATGTGGGCCTAATTATTTTTTATGGGTCGAACACGTTGATTTCCTTTTCTGATAATGGGTGACAGTGAGACTCGAACCCAAAACCTTTGTTTGCTCTGATGACATGTTAAGTTATATCTCATTTAAAAGCTTAAAGATGTTAGAGAGAGTGCATTTGTATTTGCTTAATTATATCTTCAACAGAATTGATTGTCTTCAGCAGAACCTTGTTGATGTAGCATTCCCGACTTCTTGTCCCAGCTTGACGTCGAAAGACCTATTTTTGTACATACTTTTTATGAGTTCTAAAATTTCCTTCCTTCCTCACACATCATTCCCGGGGTATTTATTCCATGTTTTTTGGGGCCTCCCATTTCCTCTCTTGAAGGATCTCTTGATTTTATGCTAGGGAGAGCTTGTAATGATGCTCTTTATCATTGTATGTGCTAATATTTATTGTCAAAAGCCACTTTTGTACTGTGCATGGTAAGTACATCTCTGCTTCTGGAACACGTATACTAATTGAGATCTGATTTGCGTAATTCTACTTTTTGGACAGGATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAGGTATTTTCATCTGCTAGTTTTGTAATCTGGAGCAAGTCAAACACTTGACATTTTGCTCTTTTCAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAGGTTGATATCTGATGATATTGTATATACATATACTTATTTGGTATTAAACTTAACCTGACATTTTTTTGTACACCAGTTAGCTGGTGTTTCCCCCTCTTCTAGATGAATCAGTGTCCCAGTAGCAGTCATTTTCTTTTTATGATGGTCTCTGAGAAATTAAACACCTACTCTCCCCCAGCACACACACACAAACAAACAAAATTAAATTAAAAATAGAAGTTAATAACAGATCAGCTTTTAGAAGATAGAGTATGACATATTTGTCTTCTTATCTTGGAGTCAAGATTCAGTCCTCCCAGCTACCCACCCACTCCAGGAAGGGGAAAAAAACATGTTTTCATTCTGTGCATGTAAAAGATGTTACACCTTCTATGTTGGGACTGAAAAGTTGAGATGTTTCTATTTCAGGGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAATGTCCA</genome_strand>
        <mrna_strand>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG..............................................................................CTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG......................................................................................................GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG.............................................................................................................................................................................................................................................................................................................................................................GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG..........................................................................................................................................................................................................................................................................GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG.................................................................GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="16980" PGL_stop="22589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16980" e_stop="17440"/>
            <exon e_start="18159" e_stop="18416"/>
            <exon e_start="18511" e_stop="18547"/>
            <exon e_start="18762" e_stop="18945"/>
            <exon e_start="19363" e_stop="19511"/>
            <exon e_start="19609" e_stop="19842"/>
            <exon e_start="20364" e_stop="20553"/>
            <exon e_start="20642" e_stop="20767"/>
            <exon e_start="20893" e_stop="20992"/>
            <exon e_start="22060" e_stop="22589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.986" e_score="0.996"/>
          <exon-intron don_prob="0.993" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="16980" e_stop="17440" e_length="461"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.986">
            <gDNA_intron_boundary i_start="17441" i_stop="18158" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18159" e_stop="18416" e_length="258"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.937">
            <gDNA_intron_boundary i_start="18417" i_stop="18510" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18511" e_stop="18547" e_length="37"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.687">
            <gDNA_intron_boundary i_start="18548" i_stop="18761" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18762" e_stop="18945" e_length="184"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.932">
            <gDNA_intron_boundary i_start="18946" i_stop="19362" i_length="417"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19363" e_stop="19511" e_length="149"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19512" i_stop="19608" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19609" e_stop="19842" e_length="234"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.870">
            <gDNA_intron_boundary i_start="19843" i_stop="20363" i_length="521"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20364" e_stop="20553" e_length="190"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20554" i_stop="20641" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20642" e_stop="20767" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20768" i_stop="20892" i_length="125"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20893" e_stop="20992" e_length="100"/>
          </exon>
          <intron i_serial="9" don_prob="0.906" acc_prob="0.991">
            <gDNA_intron_boundary i_start="20993" i_stop="22059" i_length="1067"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="22060" e_stop="22589" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16980" stop="17440"/>
              <exon start="18159" stop="18416"/>
              <exon start="18511" stop="18547"/>
              <exon start="18762" stop="18945"/>
              <exon start="19363" stop="19511"/>
              <exon start="19609" stop="19842"/>
              <exon start="20364" stop="20553"/>
              <exon start="20642" stop="20767"/>
              <exon start="20893" stop="20992"/>
              <exon start="22060" stop="22589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTTCCTTTTCGGCTGTAAGCCAATATTAACGACAAATTTTAAGCTTAAGACACCTCACTACTGCAAATCCAACAAATAATTTGACTCTGCTCAATTGCTCATACATTTGACACCTCATTGTATTACAAAGTTTGTCTATATTTCCTCTTTCGAACTTCGACAATGGCAACAGTTTTGTACCAAAAATTCCTTAATTCTTGAATGAATGAACGCTAATTGTTGCTATATAATACACTTAGACAAATCTGAAACTTACCCTTTTCATTTCACACTCTTTTCTTGTTCTTTTCCCCCACCACAAGGTACTGGCTGATAAAGCTTGCCCCTTTTTGGCACAGAGGCTGCCTGCACATTATCAGTGTTGCTTTTTCTTTCTTTTTGGAACTTGTGCTCTGGTGATCTCAAATTCTTGTGGTGTTTAAGGTTATTTCTCATCTGGGTTCAGCTCAATTGTTCG : CTTATGAATCTGTTCAAAGAGGGGTGAAGCTGAGTAGTTTAAAAGCCAATGGGCTTCCCACCCTTATTGTTAATCTTTTTGGCACTGTGTCCTGCATTTCTGGCACAAATAGTTGAAGAAACAGAATTTCTGATTGATGGAACTGTAAAAATTGCTGAGACAGATAATAATTATGTTTGCGCTACTCTTGACTGGTGGCCTAAAGAAAAGTGTAACCACAACGATTGCCCTTGGGGCTCGACATCTCTGATAAATCTG : GATTTATCTCACCCCTTTCTGGCAAATTCTATTCAAG : CTTTCAACCATCTGAGATTACGACTTGGAGGTTCTTTGCAAAACCGAATAATCTATGATGTGGGCAATTTGGAGTCGCCTTGCCATCCGTTTACCAAGCAAGGGGATGAGTTGTTTGGATTTTCAAATGGATGTTTACGTATGGATAGATGGGATGAGCTAAATAGCTTTTTCAATAAGACAGG : AGCACTTGTGACCTTTGGTCTGAATGCATTGCGAGGGAGGCAGAGGACCAGTAAGCGTGTCTGGGAAGGGAATTGGGATTCCAGCAACGCCCATGATTTCATAGATTACACTGTTTCCAAGGGCTACCAAATACACTCATGGGAATTTG : GAAATGAGTTGAGTGGTAAGGGGATTGGTGCAAAGGTTGATGCTGAACAATATGGAGAAGATGTTATACATCTTAACAATCTCATAGACCAATTGTATAAGCATTTCCAACCCCGACCACTTCTCTTAGCACCAGGAGGATTCTATGATAAAGAGTGGTTTGAGACGTTCCTTGAGATGTCAGGGCCAGGCACTGTCGATGCCTTGACTCATCATATATATAATCTTGGTGCAG : GATCTGACCTCAATCTCGTAAACAAAATTTTAAACCCTCTGCACTTGAATAAAATTGCTGACACATTCAGTAATCTTAGTCAAACCATTGAAATGAATGGTCCTTGGTCTTCAGCTTGGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTTTTG : GTACTTGGATCAGCTTGGGATGGCAGCCACATATCACACTAAAGTATATTGCAGGCAGACTTTTATTGGTGGAAACTATGGGCTCCTTGACACAAGTACATTTGTCCCAAATCCTGATTATTATAG : TGCACTTCTTTGGCATCGGCTGATGGGAAAAGGAGTTCTTGCTGTTAGCAACAATGCATCATCATATCTGCGCTCGTATGCCCACTGTACAAGACATAGA : GCAGGTGTAACATTACTTTTGATCAATCTAAGCAACCAAACTCATTATGGAGTCAACATCGAATCTAGTGTAAGCATCACCTCGCATGTCAAAGAGAAATCAAATCACAAGAGTTCTTTCGTGCAACGTCTTAAGAAAACTATTTCATGGGTTGGAAGAAAATCATCAGATGTTACATTATCACGAGAAGAGTACCATCTGACTCCACTAGATGGGAACCTTCAAAGCAGAACCATGCTCTTGAATGGAAAACCATTACAACTCGCAGAAAATGGGAACATCCCAAGTTTGTCTCCAGTCCTTGTAAAGCTGAAGTCTCCAATATCAATTTCCCCCTTGTCCATCAAATTCATAGTATTCCCCTACTTAAGCTCTCCTGTTTGTACATAGAATTAGGAAATACTTTTGTCTGATAGTTATCATCTGGCACTCTTATCTATTCACAACTTAGTAATTGTATAATTGCTACAATAAACTGAGCTGCCAAATTTTATGCAGTTATGTATTATATGGCTAGGTAAATCCATTTA</gDNA_template>
            <first_frame> L  I  S  F  S  A  V  S  Q  Y  *  R  Q  I  L  S  L  R  H  L  T  T  A  N  P  T  N  N  L  T  L  L  N  C  S  Y  I  *  H  L  I  V  L  Q  S  L  S  I  F  P  L  S  N  F  D  N  G  N  S  F  V  P  K  I  P  *  F  L  N  E  *  T  L  I  V  A  I  *  Y  T  *  T  N  L  K  L  T  L  F  I  S  H  S  F  L  V  L  F  P  H  H  K  V  L  A  D  K  A  C  P  F  L  A  Q  R  L  P  A  H  Y  Q  C  C  F  F  F  L  F  G  T  C  A  L  V  I  S  N  S  C  G  V  *  G  Y  F  S  S  G  F  S  S  I  V  R :   L  *  I  C  S  K  R  G  E  A  E  *  F  K  S  Q  W  A  S  H  P  Y  C  *  S  F  W  H  C  V  L  H  F  W  H  K  *  L  K  K  Q  N  F  *  L  M  E  L  *  K  L  L  R  Q  I  I  I  M  F  A  L  L  L  T  G  G  L  K  K  S  V  T  T  T  I  A  L  G  A  R  H  L  *  *  I  W :   I  Y  L  T  P  F  W  Q  I  L  F  K  :  L  S  T  I  *  D  Y  D  L  E  V  L  C  K  T  E  *  S  M  M  W  A  I  W  S  R  L  A  I  R  L  P  S  K  G  M  S  C  L  D  F  Q  M  D  V  Y  V  W  I  D  G  M  S  *  I  A  F  S  I  R  Q   : E  H  L  *  P  L  V  *  M  H  C  E  G  G  R  G  P  V  S  V  S  G  K  G  I  G  I  P  A  T  P  M  I  S  *  I  T  L  F  P  R  A  T  K  Y  T  H  G  N  L  :  E  M  S  *  V  V  R  G  L  V  Q  R  L  M  L  N  N  M  E  K  M  L  Y  I  L  T  I  S  *  T  N  C  I  S  I  S  N  P  D  H  F  S  *  H  Q  E  D  S  M  I  K  S  G  L  R  R  S  L  R  C  Q  G  Q  A  L  S  M  P  *  L  I  I  Y  I  I  L  V  Q  :  D  L  T  S  I  S  *  T  K  F  *  T  L  C  T  *  I  K  L  L  T  H  S  V  I  L  V  K  P  L  K  *  M  V  L  G  L  Q  L  G  L  E  N  L  V  G  P  S  I  T  E  V  L  M  C  L  T  P  L  *  T  V  F   : G  T  W  I  S  L  G  W  Q  P  H  I  T  L  K  Y  I  A  G  R  L  L  L  V  E  T  M  G  S  L  T  Q  V  H  L  S  Q  I  L  I  I  I   : V  H  F  F  G  I  G  *  W  E  K  E  F  L  L  L  A  T  M  H  H  H  I  C  A  R  M  P  T  V  Q  D  I  E :   Q  V  *  H  Y  F  *  S  I  *  A  T  K  L  I  M  E  S  T  S  N  L  V  *  A  S  P  R  M  S  K  R  N  Q  I  T  R  V  L  S  C  N  V  L  R  K  L  F  H  G  L  E  E  N  H  Q  M  L  H  Y  H  E  K  S  T  I  *  L  H  *  M  G  T  F  K  A  E  P  C  S  *  M  E  N  H  Y  N  S  Q  K  M  G  T  S  Q  V  C  L  Q  S  L  *  S  *  S  L  Q  Y  Q  F  P  P  C  P  S  N  S  *  Y  S  P  T  *  A  L  L  F  V  H  R  I  R  K  Y  F  C  L  I  V  I  I  W  H  S  Y  L  F  T  T  *  *  L  Y  N  C  Y  N  K  L  S  C  Q  I  L  C  S  Y  V  L  Y  G  *  V  N  P  F  </first_frame>
            <second_frame>  *  F  P  F  R  L  *  A  N  I  N  D  K  F  *  A  *  D  T  S  L  L  Q  I  Q  Q  I  I  *  L  C  S  I  A  H  T  F  D  T  S  L  Y  Y  K  V  C  L  Y  F  L  F  R  T  S  T  M  A  T  V  L  Y  Q  K  F  L  N  S  *  M  N  E  R  *  L  L  L  Y  N  T  L  R  Q  I  *  N  L  P  F  S  F  H  T  L  F  L  F  F  S  P  T  T  R  Y  W  L  I  K  L  A  P  F  W  H  R  G  C  L  H  I  I  S  V  A  F  S  F  F  L  E  L  V  L  W  *  S  Q  I  L  V  V  F  K  V  I  S  H  L  G  S  A  Q  L  F   : A  Y  E  S  V  Q  R  G  V  K  L  S  S  L  K  A  N  G  L  P  T  L  I  V  N  L  F  G  T  V  S  C  I  S  G  T  N  S  *  R  N  R  I  S  D  *  W  N  C  K  N  C  *  D  R  *  *  L  C  L  R  Y  S  *  L  V  A  *  R  K  V  *  P  Q  R  L  P  L  G  L  D  I  S  D  K  S   : G  F  I  S  P  L  S  G  K  F  Y  S  S :   F  Q  P  S  E  I  T  T  W  R  F  F  A  K  P  N  N  L  *  C  G  Q  F  G  V  A  L  P  S  V  Y  Q  A  R  G  *  V  V  W  I  F  K  W  M  F  T  Y  G  *  M  G  *  A  K  *  L  F  Q  *  D  R  :  S  T  C  D  L  W  S  E  C  I  A  R  E  A  E  D  Q  *  A  C  L  G  R  E  L  G  F  Q  Q  R  P  *  F  H  R  L  H  C  F  Q  G  L  P  N  T  L  M  G  I  W :   K  *  V  E  W  *  G  D  W  C  K  G  *  C  *  T  I  W  R  R  C  Y  T  S  *  Q  S  H  R  P  I  V  *  A  F  P  T  P  T  T  S  L  S  T  R  R  I  L  *  *  R  V  V  *  D  V  P  *  D  V  R  A  R  H  C  R  C  L  D  S  S  Y  I  *  S  W  C  R :   I  *  P  Q  S  R  K  Q  N  F  K  P  S  A  L  E  *  N  C  *  H  I  Q  *  S  *  S  N  H  *  N  E  W  S  L  V  F  S  L  G  W  R  I  W  W  G  L  Q  *  R  R  S  *  C  V  *  H  L  C  E  Q  F  L  :  V  L  G  S  A  W  D  G  S  H  I  S  H  *  S  I  L  Q  A  D  F  Y  W  W  K  L  W  A  P  *  H  K  Y  I  C  P  K  S  *  L  L  *  :  C  T  S  L  A  S  A  D  G  K  R  S  S  C  C  *  Q  Q  C  I  I  I  S  A  L  V  C  P  L  Y  K  T  *   : S  R  C  N  I  T  F  D  Q  S  K  Q  P  N  S  L  W  S  Q  H  R  I  *  C  K  H  H  L  A  C  Q  R  E  I  K  S  Q  E  F  F  R  A  T  S  *  E  N  Y  F  M  G  W  K  K  I  I  R  C  Y  I  I  T  R  R  V  P  S  D  S  T  R  W  E  P  S  K  Q  N  H  A  L  E  W  K  T  I  T  T  R  R  K  W  E  H  P  K  F  V  S  S  P  C  K  A  E  V  S  N  I  N  F  P  L  V  H  Q  I  H  S  I  P  L  L  K  L  S  C  L  Y  I  E  L  G  N  T  F  V  *  *  L  S  S  G  T  L  I  Y  S  Q  L  S  N  C  I  I  A  T  I  N  *  A  A  K  F  Y  A  V  M  Y  Y  M  A  R  *  I  H  L </second_frame>
            <third_frame>   D  F  L  F  G  C  K  P  I  L  T  T  N  F  K  L  K  T  P  H  Y  C  K  S  N  K  *  F  D  S  A  Q  L  L  I  H  L  T  P  H  C  I  T  K  F  V  Y  I  S  S  F  E  L  R  Q  W  Q  Q  F  C  T  K  N  S  L  I  L  E  *  M  N  A  N  C  C  Y  I  I  H  L  D  K  S  E  T  Y  P  F  H  F  T  L  F  S  C  S  F  P  P  P  Q  G  T  G  *  *  S  L  P  L  F  G  T  E  A  A  C  T  L  S  V  L  L  F  L  S  F  W  N  L  C  S  G  D  L  K  F  L  W  C  L  R  L  F  L  I  W  V  Q  L  N  C  S  :  L  M  N  L  F  K  E  G  *  S  *  V  V  *  K  P  M  G  F  P  P  L  L  L  I  F  L  A  L  C  P  A  F  L  A  Q  I  V  E  E  T  E  F  L  I  D  G  T  V  K  I  A  E  T  D  N  N  Y  V  C  A  T  L  D  W  W  P  K  E  K  C  N  H  N  D  C  P  W  G  S  T  S  L  I  N  L  :  D  L  S  H  P  F  L  A  N  S  I  Q   : A  F  N  H  L  R  L  R  L  G  G  S  L  Q  N  R  I  I  Y  D  V  G  N  L  E  S  P  C  H  P  F  T  K  Q  G  D  E  L  F  G  F  S  N  G  C  L  R  M  D  R  W  D  E  L  N  S  F  F  N  K  T  G :   A  L  V  T  F  G  L  N  A  L  R  G  R  Q  R  T  S  K  R  V  W  E  G  N  W  D  S  S  N  A  H  D  F  I  D  Y  T  V  S  K  G  Y  Q  I  H  S  W  E  F   : G  N  E  L  S  G  K  G  I  G  A  K  V  D  A  E  Q  Y  G  E  D  V  I  H  L  N  N  L  I  D  Q  L  Y  K  H  F  Q  P  R  P  L  L  L  A  P  G  G  F  Y  D  K  E  W  F  E  T  F  L  E  M  S  G  P  G  T  V  D  A  L  T  H  H  I  Y  N  L  G  A   : G  S  D  L  N  L  V  N  K  I  L  N  P  L  H  L  N  K  I  A  D  T  F  S  N  L  S  Q  T  I  E  M  N  G  P  W  S  S  A  W  V  G  E  S  G  G  A  F  N  N  G  G  P  N  V  S  N  T  F  V  N  S  F  W :   Y  L  D  Q  L  G  M  A  A  T  Y  H  T  K  V  Y  C  R  Q  T  F  I  G  G  N  Y  G  L  L  D  T  S  T  F  V  P  N  P  D  Y  Y  S :   A  L  L  W  H  R  L  M  G  K  G  V  L  A  V  S  N  N  A  S  S  Y  L  R  S  Y  A  H  C  T  R  H  R  :  A  G  V  T  L  L  L  I  N  L  S  N  Q  T  H  Y  G  V  N  I  E  S  S  V  S  I  T  S  H  V  K  E  K  S  N  H  K  S  S  F  V  Q  R  L  K  K  T  I  S  W  V  G  R  K  S  S  D  V  T  L  S  R  E  E  Y  H  L  T  P  L  D  G  N  L  Q  S  R  T  M  L  L  N  G  K  P  L  Q  L  A  E  N  G  N  I  P  S  L  S  P  V  L  V  K  L  K  S  P  I  S  I  S  P  L  S  I  K  F  I  V  F  P  Y  L  S  S  P  V  C  T  *  N  *  E  I  L  L  S  D  S  Y  H  L  A  L  L  S  I  H  N  L  V  I  V  *  L  L  Q  *  T  E  L  P  N  F  M  Q  L  C  I  I  W  L  G  K  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18201" stop="18416"/>
                    <exon start="18511" stop="18547"/>
                    <exon start="18762" stop="18945"/>
                    <exon start="19363" stop="19511"/>
                    <exon start="19609" stop="19842"/>
                    <exon start="20364" stop="20553"/>
                    <exon start="20642" stop="20767"/>
                    <exon start="20893" stop="20992"/>
                    <exon start="22060" stop="22449"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1623</number_coding_nucleotides>
                  <number_encoded_amino_acids>541</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPMGFPPLLLIFLALCPAFLAQIVEETEFLIDGTVKIAETDNNYVCATLDWWPKEKCNHNDCPWGSTSLINLDLSHPFLANSIQAFNHLRLRLGGSLQNRIIYDVGNLESPCHPFTKQGDELFGFSNGCLRMDRWDELNSFFNKTGALVTFGLNALRGRQRTSKRVWEGNWDSSNAHDFIDYTVSKGYQIHSWEFGNELSGKGIGAKVDAEQYGEDVIHLNNLIDQLYKHFQPRPLLLAPGGFYDKEWFETFLEMSGPGTVDALTHHIYNLGAGSDLNLVNKILNPLHLNKIADTFSNLSQTIEMNGPWSSAWVGESGGAFNNGGPNVSNTFVNSFWYLDQLGMAATYHTKVYCRQTFIGGNYGLLDTSTFVPNPDYYSALLWHRLMGKGVLAVSNNASSYLRSYAHCTRHRAGVTLLLINLSNQTHYGVNIESSVSITSHVKEKSNHKSSFVQRLKKTISWVGRKSSDVTLSREEYHLTPLDGNLQSRTMLLNGKPLQLAENGNIPSLSPVLVKLKSPISISPLSIKFIVFPYLSSPVCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="26845" PGL_stop="22844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26845" e_stop="26793"/>
            <exon e_start="25593" e_stop="25032"/>
            <exon e_start="24738" e_stop="24645"/>
            <exon e_start="24520" e_stop="24384"/>
            <exon e_start="23628" e_stop="23531"/>
            <exon e_start="23270" e_stop="22844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.724" acc_prob="0.000" e_score="0.981"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="26845" e_stop="26793" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.724" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26792" i_stop="25594" i_length="1199"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25593" e_stop="25032" e_length="562"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="25031" i_stop="24739" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24738" e_stop="24645" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24644" i_stop="24521" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24520" e_stop="24384" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24383" i_stop="23629" i_length="755"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23628" e_stop="23531" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="23530" i_stop="23271" i_length="260"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23270" e_stop="22844" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26845" stop="26793"/>
              <exon start="25593" stop="25032"/>
              <exon start="24738" stop="24645"/>
              <exon start="24520" stop="24384"/>
              <exon start="23628" stop="23531"/>
              <exon start="23270" stop="22844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATTATAGTTTCTTAGATTTTTTCTACAATTTATCTTCTTCGGATTTTCAG : TCTCTTTCTGCAGATAATTTCTTAATCTACCAGGTCCATCCCCGTGGGATTACTTTCTATCTATCAAAAAATGCATGGTCTTAAGAAGTCTCCTTTACATCGGAGTGCTAGAAAAAAATCTGCGGATCCTGTGGCCCATAGTAATTCTGGATCAAATCCCTTTGATTCTGACAATGAGTCAGACAAGAAGCAAACTGTAAAACCATCCAGGAAAATATCATCGGAGCCTTCTGCAGCTGCCCCAAATTTGAGTACAAACCCTTTTGATGATGATGAAATTAAAGAGACTCCTTCACATGCTTACTCAACTTCGACGGCAAGAAATAAATACAAGAATGATTTCCGGGAGTCTGGTGGATTTGAGAACCAAACTGTAGAGGAGTTGGAAAACTATGCCGTCTACAGGTCAGAAGAGACTACAAAATCTGTTAATAGCTGCCTGAAGATTGCACAAGACATGCGAGAGGATGCAACAAAAACTTTGATAACTTTACATCAACAGGGAGAACAAATTACAAGAACCCATATGACTGCAGCAGATATCGATCATGATCTTAGCAGG : GGTGAAAAACTCTTGGGGAGTCTTGGAGGCATATTTTCGAAGACTTGGAAGCCAAAGACGAGTCGCCCGATTACAGGGCCCGTTATCACAAGAA : TGTCAGATGATCCAGTTCAAAGAAGGGGCAACCACTTGGAGCAGAGGGAGAAATTAGGATTGAACTCTGCACCCAAGGCAAGGTCAAGTTCAAGGACACCACACCCAGAGCCTACAAATGCAATGCAGAAAGTTGAG : GCTGAGAAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTGACATGGGATCTGAAATTGAGAG : GCATAAAGATGCATTGGATCATACTGAACAGGATGTTGATGAGCTTGGCACCAGAGTTCAAGGGGCCAACCGGAGGATTCGGCGCTTGCTTGGAAAGTAAACCAGTAGACATCTGTTGTGGGAACCTATTAATGAGCTTTCAGACGTTAACTTCAGTTTATCATTTCAGCTATTCTTGAGTTTTTCACAAATGCTTCTCTCTGTAATTTTATGTTACTTTGTATTATAATTTTACAATATTCTATGACAGTAAACCAAGTTAATTGTATGGTATTTGGAAGGCAGGACGACAAAATTACTACTCGACCATTGTAGAGAAATAACGTGCAACACAAATAAGATTACTGTTTGATCAGTGAAGACATGGTTGAATGTACTTTATGCTAACATCCATTTTTTTTATAAATTCCAATCAACCATTCATCGA</gDNA_template>
            <first_frame> H  I  I  V  S  *  I  F  S  T  I  Y  L  L  R  I  F  S :   L  F  L  Q  I  I  S  *  S  T  R  S  I  P  V  G  L  L  S  I  Y  Q  K  M  H  G  L  K  K  S  P  L  H  R  S  A  R  K  K  S  A  D  P  V  A  H  S  N  S  G  S  N  P  F  D  S  D  N  E  S  D  K  K  Q  T  V  K  P  S  R  K  I  S  S  E  P  S  A  A  A  P  N  L  S  T  N  P  F  D  D  D  E  I  K  E  T  P  S  H  A  Y  S  T  S  T  A  R  N  K  Y  K  N  D  F  R  E  S  G  G  F  E  N  Q  T  V  E  E  L  E  N  Y  A  V  Y  R  S  E  E  T  T  K  S  V  N  S  C  L  K  I  A  Q  D  M  R  E  D  A  T  K  T  L  I  T  L  H  Q  Q  G  E  Q  I  T  R  T  H  M  T  A  A  D  I  D  H  D  L  S  R  :  G  E  K  L  L  G  S  L  G  G  I  F  S  K  T  W  K  P  K  T  S  R  P  I  T  G  P  V  I  T  R   : M  S  D  D  P  V  Q  R  R  G  N  H  L  E  Q  R  E  K  L  G  L  N  S  A  P  K  A  R  S  S  S  R  T  P  H  P  E  P  T  N  A  M  Q  K  V  E  :  A  E  K  A  K  Q  D  D  G  L  S  E  L  S  D  L  L  G  E  L  K  N  M  A  V  D  M  G  S  E  I  E  R :   H  K  D  A  L  D  H  T  E  Q  D  V  D  E  L  G  T  R  V  Q  G  A  N  R  R  I  R  R  L  L  G  K  *  T  S  R  H  L  L  W  E  P  I  N  E  L  S  D  V  N  F  S  L  S  F  Q  L  F  L  S  F  S  Q  M  L  L  S  V  I  L  C  Y  F  V  L  *  F  Y  N  I  L  *  Q  *  T  K  L  I  V  W  Y  L  E  G  R  T  T  K  L  L  L  D  H  C  R  E  I  T  C  N  T  N  K  I  T  V  *  S  V  K  T  W  L  N  V  L  Y  A  N  I  H  F  F  Y  K  F  Q  S  T  I  H  R </first_frame>
            <second_frame>  T  L  *  F  L  R  F  F  L  Q  F  I  F  F  G  F  S   : V  S  F  C  R  *  F  L  N  L  P  G  P  S  P  W  D  Y  F  L  S  I  K  K  C  M  V  L  R  S  L  L  Y  I  G  V  L  E  K  N  L  R  I  L  W  P  I  V  I  L  D  Q  I  P  L  I  L  T  M  S  Q  T  R  S  K  L  *  N  H  P  G  K  Y  H  R  S  L  L  Q  L  P  Q  I  *  V  Q  T  L  L  M  M  M  K  L  K  R  L  L  H  M  L  T  Q  L  R  R  Q  E  I  N  T  R  M  I  S  G  S  L  V  D  L  R  T  K  L  *  R  S  W  K  T  M  P  S  T  G  Q  K  R  L  Q  N  L  L  I  A  A  *  R  L  H  K  T  C  E  R  M  Q  Q  K  L  *  *  L  Y  I  N  R  E  N  K  L  Q  E  P  I  *  L  Q  Q  I  S  I  M  I  L  A  G :   V  K  N  S  W  G  V  L  E  A  Y  F  R  R  L  G  S  Q  R  R  V  A  R  L  Q  G  P  L  S  Q  E  :  C  Q  M  I  Q  F  K  E  G  A  T  T  W  S  R  G  R  N  *  D  *  T  L  H  P  R  Q  G  Q  V  Q  G  H  H  T  Q  S  L  Q  M  Q  C  R  K  L  R :   L  R  K  P  S  K  M  M  D  C  Q  N  S  A  I  C  W  G  S  S  R  I  W  L  L  T  W  D  L  K  L  R   : G  I  K  M  H  W  I  I  L  N  R  M  L  M  S  L  A  P  E  F  K  G  P  T  G  G  F  G  A  C  L  E  S  K  P  V  D  I  C  C  G  N  L  L  M  S  F  Q  T  L  T  S  V  Y  H  F  S  Y  S  *  V  F  H  K  C  F  S  L  *  F  Y  V  T  L  Y  Y  N  F  T  I  F  Y  D  S  K  P  S  *  L  Y  G  I  W  K  A  G  R  Q  N  Y  Y  S  T  I  V  E  K  *  R  A  T  Q  I  R  L  L  F  D  Q  *  R  H  G  *  M  Y  F  M  L  T  S  I  F  F  I  N  S  N  Q  P  F  I   </second_frame>
            <third_frame>   H  Y  S  F  L  D  F  F  Y  N  L  S  S  S  D  F  Q  :  S  L  S  A  D  N  F  L  I  Y  Q  V  H  P  R  G  I  T  F  Y  L  S  K  N  A  W  S  *  E  V  S  F  T  S  E  C  *  K  K  I  C  G  S  C  G  P  *  *  F  W  I  K  S  L  *  F  *  Q  *  V  R  Q  E  A  N  C  K  T  I  Q  E  N  I  I  G  A  F  C  S  C  P  K  F  E  Y  K  P  F  *  *  *  *  N  *  R  D  S  F  T  C  L  L  N  F  D  G  K  K  *  I  Q  E  *  F  P  G  V  W  W  I  *  E  P  N  C  R  G  V  G  K  L  C  R  L  Q  V  R  R  D  Y  K  I  C  *  *  L  P  E  D  C  T  R  H  A  R  G  C  N  K  N  F  D  N  F  T  S  T  G  R  T  N  Y  K  N  P  Y  D  C  S  R  Y  R  S  *  S  *  Q   : G  *  K  T  L  G  E  S  W  R  H  I  F  E  D  L  E  A  K  D  E  S  P  D  Y  R  A  R  Y  H  K  N :   V  R  *  S  S  S  K  K  G  Q  P  L  G  A  E  G  E  I  R  I  E  L  C  T  Q  G  K  V  K  F  K  D  T  T  P  R  A  Y  K  C  N  A  E  S  *   : G  *  E  S  Q  A  R  *  W  T  V  R  T  Q  R  S  V  G  G  A  Q  E  Y  G  C  *  H  G  I  *  N  *  E  :  A  *  R  C  I  G  S  Y  *  T  G  C  *  *  A  W  H  Q  S  S  R  G  Q  P  E  D  S  A  L  A  W  K  V  N  Q  *  T  S  V  V  G  T  Y  *  *  A  F  R  R  *  L  Q  F  I  I  S  A  I  L  E  F  F  T  N  A  S  L  C  N  F  M  L  L  C  I  I  I  L  Q  Y  S  M  T  V  N  Q  V  N  C  M  V  F  G  R  Q  D  D  K  I  T  T  R  P  L  *  R  N  N  V  Q  H  K  *  D  Y  C  L  I  S  E  D  M  V  E  C  T  L  C  *  H  P  F  F  L  *  I  P  I  N  H  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25568" stop="25032"/>
                    <exon start="24738" stop="24645"/>
                    <exon start="24520" stop="24384"/>
                    <exon start="23628" stop="23531"/>
                    <exon start="23270" stop="23171"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STRSIPVGLLSIYQKMHGLKKSPLHRSARKKSADPVAHSNSGSNPFDSDNESDKKQTVKPSRKISSEPSAAAPNLSTNPFDDDEIKETPSHAYSTSTARNKYKNDFRESGGFENQTVEELENYAVYRSEETTKSVNSCLKIAQDMREDATKTLITLHQQGEQITRTHMTAADIDHDLSRGEKLLGSLGGIFSKTWKPKTSRPITGPVITRMSDDPVQRRGNHLEQREKLGLNSAPKARSSSRTPHPEPTNAMQKVEAEKAKQDDGLSELSDLLGELKNMAVDMGSEIERHKDALDHTEQDVDELGTRVQGANRRIRRLLGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="42910" PGL_stop="41684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42910" e_stop="41684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="42910" e_stop="41684" e_length="1227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42910" stop="41684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATTGGGTGCTCCTGTGGAGATGCTGGTTCCTTTGGATGTGTTCGGTTGCACATCATGGAAGCAAGGGAGAAACTTAAGGCGGCCTTGGGTGAGGAAACATTTGTTAGGTTGGGTGTTTATGATATGGGAGAGATAGTGGCAGAGAAATGGAGTGAAGAGGAAGAGGAATTATTTCATGAAGTTGTATTTTCCAATCCTGCAGCATTAGGCAAGAATTTCTGGGACCACCTTGCTGTTGAATTTCCTTCACGGAGCAAGAGAGATCTTGTTAGCTATTACTTCAATGTCTTTATTTTGCGGAAGCGTGCCAAGCAGAATAGGTTTGACCCATCAAATATAGACAGTGATAACGATGAATGGCAGGAGATTGATGATGATGTTGTTGCTACGGGAGCTCAAATGACAGATGACGACGAGGATTCTGTGGTTGAATCACCAATATATCAAAATTATCCTGGTCACAATGAGATATATGTGACTGAAAAACAAGCATATGATGAAGAAGCTGGTGTTGCAACCTTGGAAGATTATCAGACGATAAATTTTTGCAGGAGGAAGGTCTTGAGTGATGTGTCAAAAGCATGTCCTGATGAATTGATTGATAATAACAGTAGTTGTGGTCACAATATTCAGCCTCTAGACAGACATCATTCAAATGAAGTGGGTAACCATGATGTTGAAGATAACTCTTGTACCACTGATGCAGCTGGGGCTTCTTCAGATACACCACAGGTAAAAACTGATGATTGTAAACACTGGGCAAGTCATTTTGCTGGTGTTGGCATTGACAGTGGGCATGATTTTGTGATGGAGCCATCTAATGGTAAAGAATGGGATATGGGAGGGTACTTGAGCTGTCCTAAGAATGAAGTTGATTTGTTACCAACTTGCTCTATGATTGAGGAAGTGTTTGGAGACGAAGCCTGGAGTTCCAAGCACAGAGATGGTCACAGTTTAAGCAAGCATTGACCTGTTGCATATGATACCCGTTTATTTTTTGCCGTTGGATCATCCTTGGAACACTTCTTGCAAAAGTGAGATCCATTTTTACTTGTATATTATTTAGTGGTGAAAGGACAGAGCATGTTAGGGATAAAAGTTGAGATTTTCGACCTTGCTCTTGGTTGTTAGTAGGAAGCTGTTTTGAGGTAGGCGGTTAGGATTAATTTATATGTAAATTATATGGCCGAGTTGAGCCATCTTTCGACAAATGAAAAAAAAAA</gDNA_template>
            <first_frame> K  N  W  V  L  L  W  R  C  W  F  L  W  M  C  S  V  A  H  H  G  S  K  G  E  T  *  G  G  L  G  *  G  N  I  C  *  V  G  C  L  *  Y  G  R  D  S  G  R  E  M  E  *  R  G  R  G  I  I  S  *  S  C  I  F  Q  S  C  S  I  R  Q  E  F  L  G  P  P  C  C  *  I  S  F  T  E  Q  E  R  S  C  *  L  L  L  Q  C  L  Y  F  A  E  A  C  Q  A  E  *  V  *  P  I  K  Y  R  Q  *  *  R  *  M  A  G  D  *  *  *  C  C  C  Y  G  S  S  N  D  R  *  R  R  G  F  C  G  *  I  T  N  I  S  K  L  S  W  S  Q  *  D  I  C  D  *  K  T  S  I  *  *  R  S  W  C  C  N  L  G  R  L  S  D  D  K  F  L  Q  E  E  G  L  E  *  C  V  K  S  M  S  *  *  I  D  *  *  *  Q  *  L  W  S  Q  Y  S  A  S  R  Q  T  S  F  K  *  S  G  *  P  *  C  *  R  *  L  L  Y  H  *  C  S  W  G  F  F  R  Y  T  T  G  K  N  *  *  L  *  T  L  G  K  S  F  C  W  C  W  H  *  Q  W  A  *  F  C  D  G  A  I  *  W  *  R  M  G  Y  G  R  V  L  E  L  S  *  E  *  S  *  F  V  T  N  L  L  Y  D  *  G  S  V  W  R  R  S  L  E  F  Q  A  Q  R  W  S  Q  F  K  Q  A  L  T  C  C  I  *  Y  P  F  I  F  C  R  W  I  I  L  G  T  L  L  A  K  V  R  S  I  F  T  C  I  L  F  S  G  E  R  T  E  H  V  R  D  K  S  *  D  F  R  P  C  S  W  L  L  V  G  S  C  F  E  V  G  G  *  D  *  F  I  C  K  L  Y  G  R  V  E  P  S  F  D  K  *  K  K  K </first_frame>
            <second_frame>  R  I  G  C  S  C  G  D  A  G  S  F  G  C  V  R  L  H  I  M  E  A  R  E  K  L  K  A  A  L  G  E  E  T  F  V  R  L  G  V  Y  D  M  G  E  I  V  A  E  K  W  S  E  E  E  E  E  L  F  H  E  V  V  F  S  N  P  A  A  L  G  K  N  F  W  D  H  L  A  V  E  F  P  S  R  S  K  R  D  L  V  S  Y  Y  F  N  V  F  I  L  R  K  R  A  K  Q  N  R  F  D  P  S  N  I  D  S  D  N  D  E  W  Q  E  I  D  D  D  V  V  A  T  G  A  Q  M  T  D  D  D  E  D  S  V  V  E  S  P  I  Y  Q  N  Y  P  G  H  N  E  I  Y  V  T  E  K  Q  A  Y  D  E  E  A  G  V  A  T  L  E  D  Y  Q  T  I  N  F  C  R  R  K  V  L  S  D  V  S  K  A  C  P  D  E  L  I  D  N  N  S  S  C  G  H  N  I  Q  P  L  D  R  H  H  S  N  E  V  G  N  H  D  V  E  D  N  S  C  T  T  D  A  A  G  A  S  S  D  T  P  Q  V  K  T  D  D  C  K  H  W  A  S  H  F  A  G  V  G  I  D  S  G  H  D  F  V  M  E  P  S  N  G  K  E  W  D  M  G  G  Y  L  S  C  P  K  N  E  V  D  L  L  P  T  C  S  M  I  E  E  V  F  G  D  E  A  W  S  S  K  H  R  D  G  H  S  L  S  K  H  *  P  V  A  Y  D  T  R  L  F  F  A  V  G  S  S  L  E  H  F  L  Q  K  *  D  P  F  L  L  V  Y  Y  L  V  V  K  G  Q  S  M  L  G  I  K  V  E  I  F  D  L  A  L  G  C  *  *  E  A  V  L  R  *  A  V  R  I  N  L  Y  V  N  Y  M  A  E  L  S  H  L  S  T  N  E  K  K   </second_frame>
            <third_frame>   E  L  G  A  P  V  E  M  L  V  P  L  D  V  F  G  C  T  S  W  K  Q  G  R  N  L  R  R  P  W  V  R  K  H  L  L  G  W  V  F  M  I  W  E  R  *  W  Q  R  N  G  V  K  R  K  R  N  Y  F  M  K  L  Y  F  P  I  L  Q  H  *  A  R  I  S  G  T  T  L  L  L  N  F  L  H  G  A  R  E  I  L  L  A  I  T  S  M  S  L  F  C  G  S  V  P  S  R  I  G  L  T  H  Q  I  *  T  V  I  T  M  N  G  R  R  L  M  M  M  L  L  L  R  E  L  K  *  Q  M  T  T  R  I  L  W  L  N  H  Q  Y  I  K  I  I  L  V  T  M  R  Y  M  *  L  K  N  K  H  M  M  K  K  L  V  L  Q  P  W  K  I  I  R  R  *  I  F  A  G  G  R  S  *  V  M  C  Q  K  H  V  L  M  N  *  L  I  I  T  V  V  V  V  T  I  F  S  L  *  T  D  I  I  Q  M  K  W  V  T  M  M  L  K  I  T  L  V  P  L  M  Q  L  G  L  L  Q  I  H  H  R  *  K  L  M  I  V  N  T  G  Q  V  I  L  L  V  L  A  L  T  V  G  M  I  L  *  W  S  H  L  M  V  K  N  G  I  W  E  G  T  *  A  V  L  R  M  K  L  I  C  Y  Q  L  A  L  *  L  R  K  C  L  E  T  K  P  G  V  P  S  T  E  M  V  T  V  *  A  S  I  D  L  L  H  M  I  P  V  Y  F  L  P  L  D  H  P  W  N  T  S  C  K  S  E  I  H  F  Y  L  Y  I  I  *  W  *  K  D  R  A  C  *  G  *  K  L  R  F  S  T  L  L  L  V  V  S  R  K  L  F  *  G  R  R  L  G  L  I  Y  M  *  I  I  W  P  S  *  A  I  F  R  Q  M  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42909" stop="41938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIGCSCGDAGSFGCVRLHIMEAREKLKAALGEETFVRLGVYDMGEIVAEKWSEEEEELFHEVVFSNPAALGKNFWDHLAVEFPSRSKRDLVSYYFNVFILRKRAKQNRFDPSNIDSDNDEWQEIDDDVVATGAQMTDDDEDSVVESPIYQNYPGHNEIYVTEKQAYDEEAGVATLEDYQTINFCRRKVLSDVSKACPDELIDNNSSCGHNIQPLDRHHSNEVGNHDVEDNSCTTDAAGASSDTPQVKTDDCKHWASHFAGVGIDSGHDFVMEPSNGKEWDMGGYLSCPKNEVDLLPTCSMIEEVFGDEAWSSKHRDGHSLSKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="45041" PGL_stop="43069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45041" e_stop="44886"/>
            <exon e_start="43800" e_stop="43653"/>
            <exon e_start="43436" e_stop="43069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.687" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45041" e_stop="44886" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.687" acc_prob="0.981">
            <gDNA_intron_boundary i_start="44885" i_stop="43801" i_length="1085"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43800" e_stop="43653" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43652" i_stop="43437" i_length="216"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="43436" e_stop="43069" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45041" stop="44886"/>
              <exon start="43800" stop="43653"/>
              <exon start="43436" stop="43069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCCCCAAAATCAATTTCTCATCTTCTACCCCTTTAATCGACCTTGATTTTTCTTCTTGAAGATCAAATCAACCTCCGATACTTCTAATTCGTTTCATTCTCTATCGATTGGTACCTCTTTTGGATCTATCCGTCTGGAAATCGAATTCCGAG : TTAAATATGGTGCAAAAAAGACCATACAGTGAAGAAAAGTTGTATGAGGTTTCATCTAAGCAGCCGAGACATGTAGAACCGAGTACTCAGCTAGTTTCCTTTTTGCAGTTTCCGTGTGAATCAGTGGCTCCCAACTCTTACACTTCAG : GTGGCGATGAGGAGAAATTTTCAGAAGTCAGAGCTTTTAGTGAGAAAAGACCTGATAGTTGCGATGTGACTGCTGTCCCTGTTTCTTCAGAGAAAGCAATTGAGACGAGCATCCATGGCTCTGCTTCAAACTCTTCTTGGACCTCTAGTAGCACCAGCGAAGAAGACATTAGGTCCGAGGTGCCTTTTCATGTATTGACGGCTTCTAAATATTACAGTAGTGATCCTCCATTCCGAGTTGTTATTCATCCAATGGAGGTCTATTCCCCTCTTTTCAACAATCCTCCTCGGAAATCGGTTCCCATTGGACCAGATTTCCAAGCCGAATTACCAGAATGGGGTGCATATGATAGTAAAAATATATCCGTG</gDNA_template>
            <first_frame> F  F  P  K  I  N  F  S  S  S  T  P  L  I  D  L  D  F  S  S  *  R  S  N  Q  P  P  I  L  L  I  R  F  I  L  Y  R  L  V  P  L  L  D  L  S  V  W  K  S  N  S  E  :  L  N  M  V  Q  K  R  P  Y  S  E  E  K  L  Y  E  V  S  S  K  Q  P  R  H  V  E  P  S  T  Q  L  V  S  F  L  Q  F  P  C  E  S  V  A  P  N  S  Y  T  S   : G  G  D  E  E  K  F  S  E  V  R  A  F  S  E  K  R  P  D  S  C  D  V  T  A  V  P  V  S  S  E  K  A  I  E  T  S  I  H  G  S  A  S  N  S  S  W  T  S  S  S  T  S  E  E  D  I  R  S  E  V  P  F  H  V  L  T  A  S  K  Y  Y  S  S  D  P  P  F  R  V  V  I  H  P  M  E  V  Y  S  P  L  F  N  N  P  P  R  K  S  V  P  I  G  P  D  F  Q  A  E  L  P  E  W  G  A  Y  D  S  K  N  I  S  V </first_frame>
            <second_frame>  F  S  P  K  S  I  S  H  L  L  P  L  *  S  T  L  I  F  L  L  E  D  Q  I  N  L  R  Y  F  *  F  V  S  F  S  I  D  W  Y  L  F  W  I  Y  P  S  G  N  R  I  P  S :   *  I  W  C  K  K  D  H  T  V  K  K  S  C  M  R  F  H  L  S  S  R  D  M  *  N  R  V  L  S  *  F  P  F  C  S  F  R  V  N  Q  W  L  P  T  L  T  L  Q  :  V  A  M  R  R  N  F  Q  K  S  E  L  L  V  R  K  D  L  I  V  A  M  *  L  L  S  L  F  L  Q  R  K  Q  L  R  R  A  S  M  A  L  L  Q  T  L  L  G  P  L  V  A  P  A  K  K  T  L  G  P  R  C  L  F  M  Y  *  R  L  L  N  I  T  V  V  I  L  H  S  E  L  L  F  I  Q  W  R  S  I  P  L  F  S  T  I  L  L  G  N  R  F  P  L  D  Q  I  S  K  P  N  Y  Q  N  G  V  H  M  I  V  K  I  Y  P   </second_frame>
            <third_frame>   F  P  Q  N  Q  F  L  I  F  Y  P  F  N  R  P  *  F  F  F  L  K  I  K  S  T  S  D  T  S  N  S  F  H  S  L  S  I  G  T  S  F  G  S  I  R  L  E  I  E  F  R   : V  K  Y  G  A  K  K  T  I  Q  *  R  K  V  V  *  G  F  I  *  A  A  E  T  C  R  T  E  Y  S  A  S  F  L  F  A  V  S  V  *  I  S  G  S  Q  L  L  H  F  R :   W  R  *  G  E  I  F  R  S  Q  S  F  *  *  E  K  T  *  *  L  R  C  D  C  C  P  C  F  F  R  E  S  N  *  D  E  H  P  W  L  C  F  K  L  F  L  D  L  *  *  H  Q  R  R  R  H  *  V  R  G  A  F  S  C  I  D  G  F  *  I  L  Q  *  *  S  S  I  P  S  C  Y  S  S  N  G  G  L  F  P  S  F  Q  Q  S  S  S  E  I  G  S  H  W  T  R  F  P  S  R  I  T  R  M  G  C  I  *  *  *  K  Y  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44978" stop="44886"/>
                    <exon start="43800" stop="43653"/>
                    <exon start="43436" stop="43069"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSNQPPILLIRFILYRLVPLLDLSVWKSNSELNMVQKRPYSEEKLYEVSSKQPRHVEPSTQLVSFLQFPCESVAPNSYTSGGDEEKFSEVRAFSEKRPDSCDVTAVPVSSEKAIETSIHGSASNSSWTSSSTSEEDIRSEVPFHVLTASKYYSSDPPFRVVIHPMEVYSPLFNNPPRKSVPIGPDFQAELPEWGAYDSKNISV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="48698" PGL_stop="47951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48698" e_stop="47951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="48698" e_stop="47951" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48698" stop="47951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTGAATGCAATGGTCTCAAAGAAGTTGCTAACTACTGGAAACAAGTGATTCAGGTGAATGACTACCAAAAGAATCGGTTTGTTAACCGAGTTGTCTCCTCTATGTTCAACACAGTTTCAGGCAAGAAGATTGCTATCCTTGGATTTGCTTTCAAGAAAGATACAGGTGACACTAGAGAGACACCAGCAATTGATGTGTGCAAAGGCCTATTGGGAGACAATGCTAACTTGAGCATATATGATCCACAGGTCACTGAGGATCAAATCCGAAAGGATCTGTCAATGAAAAAGTTTGATTGGGATAATCCAATTCACCTCCAGCCAATGAGCCCCACTGTGATGAAGCAACTCAATGTAGTATGGGATGCTTATGCAGCCACAAAAGGCGCCCACGGCCTCTGTCTTTTGACCGAGTGGGATGAGTTCAAGACTCTTGATTTCAAGAAGATTTATGATAACATGCAAAAACCTGCATTTGTGTTTGATGGAAGGAACATTGTTGATGAACAGAAGCTCAGAGAAATCGGGTTCATCGTCTACTCCATTGGGAAACCTTTAGATGGATGGCTCAAGGATATGCCTGCTGTGGCATAACCCCCCTGGAATAAGCACTGAACATGAGAGCAAAATCTATTTATATTTTTCCAGTTCTTGTCTTTTCCATTCAAGCTTACAATTGTTGTTTCCTAGTAGCATTGTTAAAAATGCTTACCTTTATATCATGTTTTTTTTGTGTGTGAACTTCAG</gDNA_template>
            <first_frame> L  *  M  Q  W  S  Q  R  S  C  *  L  L  E  T  S  D  S  G  E  *  L  P  K  E  S  V  C  *  P  S  C  L  L  Y  V  Q  H  S  F  R  Q  E  D  C  Y  P  W  I  C  F  Q  E  R  Y  R  *  H  *  R  D  T  S  N  *  C  V  Q  R  P  I  G  R  Q  C  *  L  E  H  I  *  S  T  G  H  *  G  S  N  P  K  G  S  V  N  E  K  V  *  L  G  *  S  N  S  P  P  A  N  E  P  H  C  D  E  A  T  Q  C  S  M  G  C  L  C  S  H  K  R  R  P  R  P  L  S  F  D  R  V  G  *  V  Q  D  S  *  F  Q  E  D  L  *  *  H  A  K  T  C  I  C  V  *  W  K  E  H  C  *  *  T  E  A  Q  R  N  R  V  H  R  L  L  H  W  E  T  F  R  W  M  A  Q  G  Y  A  C  C  G  I  T  P  L  E  *  A  L  N  M  R  A  K  S  I  Y  I  F  P  V  L  V  F  S  I  Q  A  Y  N  C  C  F  L  V  A  L  L  K  M  L  T  F  I  S  C  F  F  C  V  *  T  S  </first_frame>
            <second_frame>  C  E  C  N  G  L  K  E  V  A  N  Y  W  K  Q  V  I  Q  V  N  D  Y  Q  K  N  R  F  V  N  R  V  V  S  S  M  F  N  T  V  S  G  K  K  I  A  I  L  G  F  A  F  K  K  D  T  G  D  T  R  E  T  P  A  I  D  V  C  K  G  L  L  G  D  N  A  N  L  S  I  Y  D  P  Q  V  T  E  D  Q  I  R  K  D  L  S  M  K  K  F  D  W  D  N  P  I  H  L  Q  P  M  S  P  T  V  M  K  Q  L  N  V  V  W  D  A  Y  A  A  T  K  G  A  H  G  L  C  L  L  T  E  W  D  E  F  K  T  L  D  F  K  K  I  Y  D  N  M  Q  K  P  A  F  V  F  D  G  R  N  I  V  D  E  Q  K  L  R  E  I  G  F  I  V  Y  S  I  G  K  P  L  D  G  W  L  K  D  M  P  A  V  A  *  P  P  W  N  K  H  *  T  *  E  Q  N  L  F  I  F  F  Q  F  L  S  F  P  F  K  L  T  I  V  V  S  *  *  H  C  *  K  C  L  P  L  Y  H  V  F  F  V  C  E  L  Q </second_frame>
            <third_frame>   V  N  A  M  V  S  K  K  L  L  T  T  G  N  K  *  F  R  *  M  T  T  K  R  I  G  L  L  T  E  L  S  P  L  C  S  T  Q  F  Q  A  R  R  L  L  S  L  D  L  L  S  R  K  I  Q  V  T  L  E  R  H  Q  Q  L  M  C  A  K  A  Y  W  E  T  M  L  T  *  A  Y  M  I  H  R  S  L  R  I  K  S  E  R  I  C  Q  *  K  S  L  I  G  I  I  Q  F  T  S  S  Q  *  A  P  L  *  *  S  N  S  M  *  Y  G  M  L  M  Q  P  Q  K  A  P  T  A  S  V  F  *  P  S  G  M  S  S  R  L  L  I  S  R  R  F  M  I  T  C  K  N  L  H  L  C  L  M  E  G  T  L  L  M  N  R  S  S  E  K  S  G  S  S  S  T  P  L  G  N  L  *  M  D  G  S  R  I  C  L  L  W  H  N  P  P  G  I  S  T  E  H  E  S  K  I  Y  L  Y  F  S  S  S  C  L  F  H  S  S  L  Q  L  L  F  P  S  S  I  V  K  N  A  Y  L  Y  I  M  F  F  L  C  V  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48697" stop="48104"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CECNGLKEVANYWKQVIQVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDNANLSIYDPQVTEDQIRKDLSMKKFDWDNPIHLQPMSPTVMKQLNVVWDAYAATKGAHGLCLLTEWDEFKTLDFKKIYDNMQKPAFVFDGRNIVDEQKLREIGFIVYSIGKPLDGWLKDMPAVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="56120" PGL_stop="58783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56120" e_stop="56460"/>
            <exon e_start="56545" e_stop="56598"/>
            <exon e_start="56836" e_stop="56969"/>
            <exon e_start="57063" e_stop="57363"/>
            <exon e_start="57926" e_stop="57997"/>
            <exon e_start="58378" e_stop="58443"/>
            <exon e_start="58528" e_stop="58783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="0.993"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56120" e_stop="56460" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56461" i_stop="56544" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56545" e_stop="56598" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.919">
            <gDNA_intron_boundary i_start="56599" i_stop="56835" i_length="237"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56836" e_stop="56969" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.905" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56970" i_stop="57062" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="57063" e_stop="57363" e_length="301"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="57364" i_stop="57925" i_length="562"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="57926" e_stop="57997" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57998" i_stop="58377" i_length="380"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58378" e_stop="58443" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="58444" i_stop="58527" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58528" e_stop="58783" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56120" stop="56460"/>
              <exon start="56545" stop="56598"/>
              <exon start="56836" stop="56969"/>
              <exon start="57063" stop="57363"/>
              <exon start="57926" stop="57997"/>
              <exon start="58378" stop="58443"/>
              <exon start="58528" stop="58783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTGCCTCTGCCAGCTTAAATCGCATCGTCCCCCTTCTCCCTCGTGTGTATCGCCCCCCTCCCTTTTCTCCAATTTCGGATTTTCCCCTGCTAAATCTCATCAATTTTACCGTCCAATTCTCTTCTACAAAACCCCCCATCAAGCTCCCAATTTCCCTCATAGCCATACAGACAAAATTACAATATTTTCTTGAAAAATCTGGCAATGGCTTCTTTCAGTGTCCCTTGTCCTAAGATTTCTGTCCTCTCTGTTGCTTCATCATCCAATTTAAGCTCGACCCATCAGCCCCAGAGCTCCCTTTCCTTCAGATCCGGTCCTGCATTGCTCCCTCGTATTCAG : GGGTCCAGTCGCATCCAATCTCAGGTGTTTAAGGTGAATGCCCAGCTGAATGAG : GTTGCTATTGACAAGTCGAACAATTCAAAACCTGTCTCTGAGAAAAGCTTGGAGGAAGTCTCCAAGACTGAATACAGTATTCCAGATGCTTCATCCATTCAAGCATTCATGTCTCAGGCAGCTGATCTTGTGGA : GCTTGTGGATTCAAGGGACATTGTGGAGCTGCAGCTAAAGCAAAACAATTGTGAAATTCTTATAAGGAAGAAGGCGGCATTGCCCCAGCCGCCTGTTTATATGGCCTCACCATCTGTTCCACAGGCCTTTGTTCAGCAACAGTTGCCTCCTGCAAGTGCCCCTGCTCCTGCAGCTCCAGCAGTTGCTGCACTTCCTCCACCTGCACCTTCAAAGCCTAAATCCTCACATCCTCCAATGAAATGTCCCATGGCCGGAACATTCTATCGATCACCTGCCCCAGGGGCAGCACCTTTTGTTAAG : GTAGGTGACAAGGTCCAGAAAGGGCAAGTGGTCTGCATTATTGAGGCTATGAAATTGATGAATGAAATTGAG : GCTGATCAAGCTGGAACCATAGTTGACATAGTTGCAGAGGATGGTAAGCCCGTTAGTGTGGACACG : CCTCTATTTGTCATTGAACCATGATAGAAAGAAGTAATCTTGGTGTGCAACATAGGTGGATGAAGCAGAGTGAAATTCAAAAGTTATAGAGAGCAAATCTGTCTTAAGCTCAAGGCATATCTGCTCAGAAGATTGGTTCACTATTACTCTTGTTGAAATCTATGATCATATTTATAGCTTGTATTACTCATTTTCCTTATGCTGCTCATAAATTTTGGAACTATATTTTCTTTATAAAGTTGTGACTTGATGATAA</gDNA_template>
            <first_frame> I  C  L  C  Q  L  K  S  H  R  P  P  S  P  S  C  V  S  P  P  S  L  F  S  N  F  G  F  S  P  A  K  S  H  Q  F  Y  R  P  I  L  F  Y  K  T  P  H  Q  A  P  N  F  P  H  S  H  T  D  K  I  T  I  F  S  *  K  I  W  Q  W  L  L  S  V  S  L  V  L  R  F  L  S  S  L  L  L  H  H  P  I  *  A  R  P  I  S  P  R  A  P  F  P  S  D  P  V  L  H  C  S  L  V  F  R :   G  P  V  A  S  N  L  R  C  L  R  *  M  P  S  *  M  R :   L  L  L  T  S  R  T  I  Q  N  L  S  L  R  K  A  W  R  K  S  P  R  L  N  T  V  F  Q  M  L  H  P  F  K  H  S  C  L  R  Q  L  I  L  W   : S  L  W  I  Q  G  T  L  W  S  C  S  *  S  K  T  I  V  K  F  L  *  G  R  R  R  H  C  P  S  R  L  F  I  W  P  H  H  L  F  H  R  P  L  F  S  N  S  C  L  L  Q  V  P  L  L  L  Q  L  Q  Q  L  L  H  F  L  H  L  H  L  Q  S  L  N  P  H  I  L  Q  *  N  V  P  W  P  E  H  S  I  D  H  L  P  Q  G  Q  H  L  L  L  R :   *  V  T  R  S  R  K  G  K  W  S  A  L  L  R  L  *  N  *  *  M  K  L  R :   L  I  K  L  E  P  *  L  T  *  L  Q  R  M  V  S  P  L  V  W  T  R :   L  Y  L  S  L  N  H  D  R  K  K  *  S  W  C  A  T  *  V  D  E  A  E  *  N  S  K  V  I  E  S  K  S  V  L  S  S  R  H  I  C  S  E  D  W  F  T  I  T  L  V  E  I  Y  D  H  I  Y  S  L  Y  Y  S  F  S  L  C  C  S  *  I  L  E  L  Y  F  L  Y  K  V  V  T  *  *  * </first_frame>
            <second_frame>  S  A  S  A  S  L  N  R  I  V  P  L  L  P  R  V  Y  R  P  P  P  F  S  P  I  S  D  F  P  L  L  N  L  I  N  F  T  V  Q  F  S  S  T  K  P  P  I  K  L  P  I  S  L  I  A  I  Q  T  K  L  Q  Y  F  L  E  K  S  G  N  G  F  F  Q  C  P  L  S  *  D  F  C  P  L  C  C  F  I  I  Q  F  K  L  D  P  S  A  P  E  L  P  F  L  Q  I  R  S  C  I  A  P  S  Y  S   : G  V  Q  S  H  P  I  S  G  V  *  G  E  C  P  A  E  *   : G  C  Y  *  Q  V  E  Q  F  K  T  C  L  *  E  K  L  G  G  S  L  Q  D  *  I  Q  Y  S  R  C  F  I  H  S  S  I  H  V  S  G  S  *  S  C  G  :  A  C  G  F  K  G  H  C  G  A  A  A  K  A  K  Q  L  *  N  S  Y  K  E  E  G  G  I  A  P  A  A  C  L  Y  G  L  T  I  C  S  T  G  L  C  S  A  T  V  A  S  C  K  C  P  C  S  C  S  S  S  S  C  C  T  S  S  T  C  T  F  K  A  *  I  L  T  S  S  N  E  M  S  H  G  R  N  I  L  S  I  T  C  P  R  G  S  T  F  C  *   : G  R  *  Q  G  P  E  R  A  S  G  L  H  Y  *  G  Y  E  I  D  E  *  N  *   : G  *  S  S  W  N  H  S  *  H  S  C  R  G  W  *  A  R  *  C  G  H   : A  S  I  C  H  *  T  M  I  E  R  S  N  L  G  V  Q  H  R  W  M  K  Q  S  E  I  Q  K  L  *  R  A  N  L  S  *  A  Q  G  I  S  A  Q  K  I  G  S  L  L  L  L  L  K  S  M  I  I  F  I  A  C  I  T  H  F  P  Y  A  A  H  K  F  W  N  Y  I  F  F  I  K  L  *  L  D  D   </second_frame>
            <third_frame>   L  P  L  P  A  *  I  A  S  S  P  F  S  L  V  C  I  A  P  L  P  F  L  Q  F  R  I  F  P  C  *  I  S  S  I  L  P  S  N  S  L  L  Q  N  P  P  S  S  S  Q  F  P  S  *  P  Y  R  Q  N  Y  N  I  F  L  K  N  L  A  M  A  S  F  S  V  P  C  P  K  I  S  V  L  S  V  A  S  S  S  N  L  S  S  T  H  Q  P  Q  S  S  L  S  F  R  S  G  P  A  L  L  P  R  I  Q  :  G  S  S  R  I  Q  S  Q  V  F  K  V  N  A  Q  L  N  E  :  V  A  I  D  K  S  N  N  S  K  P  V  S  E  K  S  L  E  E  V  S  K  T  E  Y  S  I  P  D  A  S  S  I  Q  A  F  M  S  Q  A  A  D  L  V  E :   L  V  D  S  R  D  I  V  E  L  Q  L  K  Q  N  N  C  E  I  L  I  R  K  K  A  A  L  P  Q  P  P  V  Y  M  A  S  P  S  V  P  Q  A  F  V  Q  Q  Q  L  P  P  A  S  A  P  A  P  A  A  P  A  V  A  A  L  P  P  P  A  P  S  K  P  K  S  S  H  P  P  M  K  C  P  M  A  G  T  F  Y  R  S  P  A  P  G  A  A  P  F  V  K  :  V  G  D  K  V  Q  K  G  Q  V  V  C  I  I  E  A  M  K  L  M  N  E  I  E  :  A  D  Q  A  G  T  I  V  D  I  V  A  E  D  G  K  P  V  S  V  D  T  :  P  L  F  V  I  E  P  *  *  K  E  V  I  L  V  C  N  I  G  G  *  S  R  V  K  F  K  S  Y  R  E  Q  I  C  L  K  L  K  A  Y  L  L  R  R  L  V  H  Y  Y  S  C  *  N  L  *  S  Y  L  *  L  V  L  L  I  F  L  M  L  L  I  N  F  G  T  I  F  S  L  *  S  C  D  L  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56284" stop="56460"/>
                    <exon start="56545" stop="56598"/>
                    <exon start="56836" stop="56969"/>
                    <exon start="57063" stop="57363"/>
                    <exon start="57926" stop="57997"/>
                    <exon start="58378" stop="58443"/>
                    <exon start="58528" stop="58551"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYRQNYNIFLKNLAMASFSVPCPKISVLSVASSSNLSSTHQPQSSLSFRSGPALLPRIQGSSRIQSQVFKVNAQLNEVAIDKSNNSKPVSEKSLEEVSKTEYSIPDASSIQAFMSQAADLVELVDSRDIVELQLKQNNCEILIRKKAALPQPPVYMASPSVPQAFVQQQLPPASAPAPAAPAVAALPPPAPSKPKSSHPPMKCPMAGTFYRSPAPGAAPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQAGTIVDIVAEDGKPVSVDTPLFVIEP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56120" stop="56314"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICLCQLKSHRPPSPSCVSPPSLFSNFGFSPAKSHQFYRPILFYKTPHQAPNFPHSHTDKITIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="75110" PGL_stop="71191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75110" e_stop="75082"/>
            <exon e_start="75001" e_stop="74754"/>
            <exon e_start="74666" e_stop="74559"/>
            <exon e_start="71747" e_stop="71191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.979" acc_prob="0.992" e_score="0.992"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="75110" e_stop="75082" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75081" i_stop="75002" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="75001" e_stop="74754" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.992">
            <gDNA_intron_boundary i_start="74753" i_stop="74667" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="74666" e_stop="74559" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74558" i_stop="71748" i_length="2811"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="71747" e_stop="71191" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75110" stop="75082"/>
              <exon start="75001" stop="74754"/>
              <exon start="74666" stop="74559"/>
              <exon start="71747" stop="71191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGAGCTGCTAATAGGCTTACTGAAAAG : GTTATAGAAGGCATTGGTTTTAATGAGGAAGGGGCCCCAGGGGTTAAAGCTAAAAGAAGGGCTATATTGACCACTCAGCTTATGCAGCAACTACTCCCCTCTCCCCCTGCAGCAATTCTTTCTGCAGAAGCTAATTCAGAGTATGAGAGTGTGGGTTACTCCATCTCTAGATCGTCATTGGGGGATGCATGCAGCATGCTTTCTTGCTCAAATGCTGATCGTAATATGCCTTGTGATGACAAAGAACT : GCTTCCCAAAGGGTGCATTACTTCTCAGAGGATTAATAAACATGATTTTGCCAAAACATTAGAAGAGTTACAGGGAAGAGCGAGGAGATTGGAAAGTGATTTTATGAG : ACTGGACAAGAGAGCATCGGTATTAGATGTGACAGTGGATGGGCAAGACCAAGAGAAGTTCGGCGTTATTAATCGGTATGCTAGGTTTCTTGGTCGGGCGCAATATGATGGTATTCCTCAGAGATACGTCACAGCGCTTCCAATACCAAAAGATCTGCCTAGTGGGGTGCACTGTCTTTCTCTATAATCACAAATCAATTGAATCTTTTCTGTGCTCTGTCATCAATTACCTCAACTTCCCGTAGACATTTTTGTCCTAGTCATGTACTAGTTCTAGCAAGAGCAAAATAGAACCACACAATCAGTATTGCTGAACATACTCAATTGTCATCTCAGATGGAACGTAGCTGTCCAATCTTTTGCATGTAGGCCATTTATGTCATTATCAAGAAAATATACATGTACATCTCTTCAAACTTAGTGAGGGGAGGTGAAACTAGGGTGCCCCATCATTTTTTGCCAGAAGTGGGGAGAGAATACATACTTCTGTGCTTCTAAGCTGTTGACATACAGTTGGCCATCATTATGTATAAGAGATGCCCAGGCGCTCATAATTG</gDNA_template>
            <first_frame> L  E  L  L  I  G  L  L  K  R :   L  *  K  A  L  V  L  M  R  K  G  P  Q  G  L  K  L  K  E  G  L  Y  *  P  L  S  L  C  S  N  Y  S  P  L  P  L  Q  Q  F  F  L  Q  K  L  I  Q  S  M  R  V  W  V  T  P  S  L  D  R  H  W  G  M  H  A  A  C  F  L  A  Q  M  L  I  V  I  C  L  V  M  T  K  N   : C  F  P  K  G  A  L  L  L  R  G  L  I  N  M  I  L  P  K  H  *  K  S  Y  R  E  E  R  G  D  W  K  V  I  L  *   : D  W  T  R  E  H  R  Y  *  M  *  Q  W  M  G  K  T  K  R  S  S  A  L  L  I  G  M  L  G  F  L  V  G  R  N  M  M  V  F  L  R  D  T  S  Q  R  F  Q  Y  Q  K  I  C  L  V  G  C  T  V  F  L  Y  N  H  K  S  I  E  S  F  L  C  S  V  I  N  Y  L  N  F  P  *  T  F  L  S  *  S  C  T  S  S  S  K  S  K  I  E  P  H  N  Q  Y  C  *  T  Y  S  I  V  I  S  D  G  T  *  L  S  N  L  L  H  V  G  H  L  C  H  Y  Q  E  N  I  H  V  H  L  F  K  L  S  E  G  R  *  N  *  G  A  P  S  F  F  A  R  S  G  E  R  I  H  T  S  V  L  L  S  C  *  H  T  V  G  H  H  Y  V  *  E  M  P  R  R  S  *  L </first_frame>
            <second_frame>  *  S  C  *  *  A  Y  *  K   : G  Y  R  R  H  W  F  *  *  G  R  G  P  R  G  *  S  *  K  K  G  Y  I  D  H  S  A  Y  A  A  T  T  P  L  S  P  C  S  N  S  F  C  R  S  *  F  R  V  *  E  C  G  L  L  H  L  *  I  V  I  G  G  C  M  Q  H  A  F  L  L  K  C  *  S  *  Y  A  L  *  *  Q  R  T  :  A  S  Q  R  V  H  Y  F  S  E  D  *  *  T  *  F  C  Q  N  I  R  R  V  T  G  K  S  E  E  I  G  K  *  F  Y  E  :  T  G  Q  E  S  I  G  I  R  C  D  S  G  W  A  R  P  R  E  V  R  R  Y  *  S  V  C  *  V  S  W  S  G  A  I  *  W  Y  S  S  E  I  R  H  S  A  S  N  T  K  R  S  A  *  W  G  A  L  S  F  S  I  I  T  N  Q  L  N  L  F  C  A  L  S  S  I  T  S  T  S  R  R  H  F  C  P  S  H  V  L  V  L  A  R  A  K  *  N  H  T  I  S  I  A  E  H  T  Q  L  S  S  Q  M  E  R  S  C  P  I  F  C  M  *  A  I  Y  V  I  I  K  K  I  Y  M  Y  I  S  S  N  L  V  R  G  G  E  T  R  V  P  H  H  F  L  P  E  V  G  R  E  Y  I  L  L  C  F  *  A  V  D  I  Q  L  A  I  I  M  Y  K  R  C  P  G  A  H  N   </second_frame>
            <third_frame>   R  A  A  N  R  L  T  E  K  :  V  I  E  G  I  G  F  N  E  E  G  A  P  G  V  K  A  K  R  R  A  I  L  T  T  Q  L  M  Q  Q  L  L  P  S  P  P  A  A  I  L  S  A  E  A  N  S  E  Y  E  S  V  G  Y  S  I  S  R  S  S  L  G  D  A  C  S  M  L  S  C  S  N  A  D  R  N  M  P  C  D  D  K  E  L :   L  P  K  G  C  I  T  S  Q  R  I  N  K  H  D  F  A  K  T  L  E  E  L  Q  G  R  A  R  R  L  E  S  D  F  M  R :   L  D  K  R  A  S  V  L  D  V  T  V  D  G  Q  D  Q  E  K  F  G  V  I  N  R  Y  A  R  F  L  G  R  A  Q  Y  D  G  I  P  Q  R  Y  V  T  A  L  P  I  P  K  D  L  P  S  G  V  H  C  L  S  L  *  S  Q  I  N  *  I  F  S  V  L  C  H  Q  L  P  Q  L  P  V  D  I  F  V  L  V  M  Y  *  F  *  Q  E  Q  N  R  T  T  Q  S  V  L  L  N  I  L  N  C  H  L  R  W  N  V  A  V  Q  S  F  A  C  R  P  F  M  S  L  S  R  K  Y  T  C  T  S  L  Q  T  *  *  G  E  V  K  L  G  C  P  I  I  F  C  Q  K  W  G  E  N  T  Y  F  C  A  S  K  L  L  T  Y  S  W  P  S  L  C  I  R  D  A  Q  A  L  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75108" stop="75082"/>
                    <exon start="75001" stop="74754"/>
                    <exon start="74666" stop="74559"/>
                    <exon start="71747" stop="71561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAANRLTEKVIEGIGFNEEGAPGVKAKRRAILTTQLMQQLLPSPPAAILSAEANSEYESVGYSISRSSLGDACSMLSCSNADRNMPCDDKELLPKGCITSQRINKHDFAKTLEELQGRARRLESDFMRLDKRASVLDVTVDGQDQEKFGVINRYARFLGRAQYDGIPQRYVTALPIPKDLPSGVHCLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="77434" PGL_stop="75747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77434" e_stop="77403"/>
            <exon e_start="77201" e_stop="75747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77434" e_stop="77403" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77402" i_stop="77202" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="77201" e_stop="75747" e_length="1455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77434" stop="77403"/>
              <exon start="77201" stop="75983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76465" stop="75747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACATTCACCTAATAAAGCTGCGGAATCTAG : TCCAAACATGCTACAGCTTATTCAGAAGGTGGACCAGTCGAGAGAGTGTGGTTCCGGGGCAGAGTTAGGTCATTCTGAAAAAAAAGCATCATCTAGGATGCCTGAAGCAGCAGAGAATTCTGATGAGTCTGTTGGTCATCACCTGAGGAGTCAGTCTGCTTTCTCTCAAGGCTATGGTCTACAACTTGGCCCTCCATCCCGACGTGCATCAGTCCGAACCCATTCTTTGACATCTCAGCGCCCGATCCAAGCTTTTAGCTCTTCACATTATAGTCATGCTACTGTTGACACTGGTGAGAAGAATCAAGGACCAATGCACCCCCCTCATCAGGCTCCATCCGTACTTTCACCTTCTGATCCATCCCAGGAAGGATTGAAGAATATAGGATTTGGTATTGCAGGAAGTACCAATAATGTAACTTCTATGTATGCAATGCCCGGAAACCTTTCTCCAGCGTTTGATTCTCATTCTGGTTTTCCCTATAGGGGAGGTCAGCTTAAAATTCCAAATGTGGCTAGGACTACTGCACAACTCCCAACAAATCAATCCTTGAGTGTATCCTTTGATAAGCATGCTTCCTCTCATACAGAGAAAGGTGACTCTTGCAGAGGATCTGCAAATGGTCAGTCTGTGGAGGCTTCCTTGCTGGCTGGGGCTGACAAGTTGCAAGATAAGCCTATTCTCTCCGCAGACAAGTCTCAATTGAGTAACACCAATCGTACAGTGGAAAGTATCTTTACCAATCAAGTTACATCCCAAGAGCCAGTATCAGTTTCTCAGGCGTTAGTGTCTGGCATCGGTCAGCAGGGTACGTATTCAAAAATGTCATCCGGTATATGGGGTACTTTTCCACCACCTCAGCAAGCTTTTGGCTCTCAGTATAGCAAGGATTCTTCTCATATTTTCCAATCACATCAAATGAATATTGTGGAGTCGTCATTATCTGCTCCTGGGAGGCAAAGTGATCAATACTTGAATAGAGGTAGTTTTGCATCCCAGATTGGTACTAGCTCAGTGAATTCCCTGGTTTCTTCTGAAGGGGAAGAACAGCGACCAAAGGAAAGTCATTCTCAGCAAATATCAGTGACAAATGTTGACCACATCCAGAAGATGAATGATTCACAGGGTAGAGAACCTTTTATCAAGTATATCTTGGGAGGATCTGCTGCAAATGCTGCATCTATGCAGAGAGATATTGAAGCCTTTGGCCGAACTTTGAAGCCCAACCTTTCAAATCAGAACTATTCCCTATTAAACCAAGTGCAGGCTATCAAACATGTGGAGGTCGATCCAAGCAATAGGGACTTCAAGAGAATGAAAGTAGCAGACAGCAGTACAGGTGCTCCACAATTTTCTTCTGGGGACACTGAAATGTTGGGAGTCTCTGTGCCAGAGGATTTGCAAAGAAGCATTTCATCTCAACAAGGGAGAAAAATGTCTCCTCATGATGTACT</gDNA_template>
            <first_frame> S  H  S  P  N  K  A  A  E  S  S :   P  N  M  L  Q  L  I  Q  K  V  D  Q  S  R  E  C  G  S  G  A  E  L  G  H  S  E  K  K  A  S  S  R  M  P  E  A  A  E  N  S  D  E  S  V  G  H  H  L  R  S  Q  S  A  F  S  Q  G  Y  G  L  Q  L  G  P  P  S  R  R  A  S  V  R  T  H  S  L  T  S  Q  R  P  I  Q  A  F  S  S  S  H  Y  S  H  A  T  V  D  T  G  E  K  N  Q  G  P  M  H  P  P  H  Q  A  P  S  V  L  S  P  S  D  P  S  Q  E  G  L  K  N  I  G  F  G  I  A  G  S  T  N  N  V  T  S  M  Y  A  M  P  G  N  L  S  P  A  F  D  S  H  S  G  F  P  Y  R  G  G  Q  L  K  I  P  N  V  A  R  T  T  A  Q  L  P  T  N  Q  S  L  S  V  S  F  D  K  H  A  S  S  H  T  E  K  G  D  S  C  R  G  S  A  N  G  Q  S  V  E  A  S  L  L  A  G  A  D  K  L  Q  D  K  P  I  L  S  A  D  K  S  Q  L  S  N  T  N  R  T  V  E  S  I  F  T  N  Q  V  T  S  Q  E  P  V  S  V  S  Q  A  L  V  S  G  I  G  Q  Q  G  T  Y  S  K  M  S  S  G  I  W  G  T  F  P  P  P  Q  Q  A  F  G  S  Q  Y  S  K  D  S  S  H  I  F  Q  S  H  Q  M  N  I  V  E  S  S  L  S  A  P  G  R  Q  S  D  Q  Y  L  N  R  G  S  F  A  S  Q  I  G  T  S  S  V  N  S  L  V  S  S  E  G  E  E  Q  R  P  K  E  S  H  S  Q  Q  I  S  V  T  N  V  D  H  I  Q  K  M  N  D  S  Q  G  R  E  P  F  I  K  Y  I  L  G  G  S  A  A  N  A  A  S  M  Q  R  D  I  E  A  F  G  R  T  L  K  P  N  L  S  N  Q  N  Y  S  L  L  N  Q  V  Q  A  I  K  H  V  E  V  D  P  S  N  R  D  F  K  R  M  K  V  A  D  S  S  T  G  A  P  Q  F  S  S  G  D  T  E  M  L  G  V  S  V  P  E  D  L  Q  R  S  I  S  S  Q  Q  G  R  K  M  S  P  H  D  V   </first_frame>
            <second_frame>  H  I  H  L  I  K  L  R  N  L   : V  Q  T  C  Y  S  L  F  R  R  W  T  S  R  E  S  V  V  P  G  Q  S  *  V  I  L  K  K  K  H  H  L  G  C  L  K  Q  Q  R  I  L  M  S  L  L  V  I  T  *  G  V  S  L  L  S  L  K  A  M  V  Y  N  L  A  L  H  P  D  V  H  Q  S  E  P  I  L  *  H  L  S  A  R  S  K  L  L  A  L  H  I  I  V  M  L  L  L  T  L  V  R  R  I  K  D  Q  C  T  P  L  I  R  L  H  P  Y  F  H  L  L  I  H  P  R  K  D  *  R  I  *  D  L  V  L  Q  E  V  P  I  M  *  L  L  C  M  Q  C  P  E  T  F  L  Q  R  L  I  L  I  L  V  F  P  I  G  E  V  S  L  K  F  Q  M  W  L  G  L  L  H  N  S  Q  Q  I  N  P  *  V  Y  P  L  I  S  M  L  P  L  I  Q  R  K  V  T  L  A  E  D  L  Q  M  V  S  L  W  R  L  P  C  W  L  G  L  T  S  C  K  I  S  L  F  S  P  Q  T  S  L  N  *  V  T  P  I  V  Q  W  K  V  S  L  P  I  K  L  H  P  K  S  Q  Y  Q  F  L  R  R  *  C  L  A  S  V  S  R  V  R  I  Q  K  C  H  P  V  Y  G  V  L  F  H  H  L  S  K  L  L  A  L  S  I  A  R  I  L  L  I  F  S  N  H  I  K  *  I  L  W  S  R  H  Y  L  L  L  G  G  K  V  I  N  T  *  I  E  V  V  L  H  P  R  L  V  L  A  Q  *  I  P  W  F  L  L  K  G  K  N  S  D  Q  R  K  V  I  L  S  K  Y  Q  *  Q  M  L  T  T  S  R  R  *  M  I  H  R  V  E  N  L  L  S  S  I  S  W  E  D  L  L  Q  M  L  H  L  C  R  E  I  L  K  P  L  A  E  L  *  S  P  T  F  Q  I  R  T  I  P  Y  *  T  K  C  R  L  S  N  M  W  R  S  I  Q  A  I  G  T  S  R  E  *  K  *  Q  T  A  V  Q  V  L  H  N  F  L  L  G  T  L  K  C  W  E  S  L  C  Q  R  I  C  K  E  A  F  H  L  N  K  G  E  K  C  L  L  M  M  Y  </second_frame>
            <third_frame>   T  F  T  *  *  S  C  G  I  *  :  S  K  H  A  T  A  Y  S  E  G  G  P  V  E  R  V  W  F  R  G  R  V  R  S  F  *  K  K  S  I  I  *  D  A  *  S  S  R  E  F  *  *  V  C  W  S  S  P  E  E  S  V  C  F  L  S  R  L  W  S  T  T  W  P  S  I  P  T  C  I  S  P  N  P  F  F  D  I  S  A  P  D  P  S  F  *  L  F  T  L  *  S  C  Y  C  *  H  W  *  E  E  S  R  T  N  A  P  P  S  S  G  S  I  R  T  F  T  F  *  S  I  P  G  R  I  E  E  Y  R  I  W  Y  C  R  K  Y  Q  *  C  N  F  Y  V  C  N  A  R  K  P  F  S  S  V  *  F  S  F  W  F  S  L  *  G  R  S  A  *  N  S  K  C  G  *  D  Y  C  T  T  P  N  K  S  I  L  E  C  I  L  *  *  A  C  F  L  S  Y  R  E  R  *  L  L  Q  R  I  C  K  W  S  V  C  G  G  F  L  A  G  W  G  *  Q  V  A  R  *  A  Y  S  L  R  R  Q  V  S  I  E  *  H  Q  S  Y  S  G  K  Y  L  Y  Q  S  S  Y  I  P  R  A  S  I  S  F  S  G  V  S  V  W  H  R  S  A  G  Y  V  F  K  N  V  I  R  Y  M  G  Y  F  S  T  T  S  A  S  F  W  L  S  V  *  Q  G  F  F  S  Y  F  P  I  T  S  N  E  Y  C  G  V  V  I  I  C  S  W  E  A  K  *  S  I  L  E  *  R  *  F  C  I  P  D  W  Y  *  L  S  E  F  P  G  F  F  *  R  G  R  T  A  T  K  G  K  S  F  S  A  N  I  S  D  K  C  *  P  H  P  E  D  E  *  F  T  G  *  R  T  F  Y  Q  V  Y  L  G  R  I  C  C  K  C  C  I  Y  A  E  R  Y  *  S  L  W  P  N  F  E  A  Q  P  F  K  S  E  L  F  P  I  K  P  S  A  G  Y  Q  T  C  G  G  R  S  K  Q  *  G  L  Q  E  N  E  S  S  R  Q  Q  Y  R  C  S  T  I  F  F  W  G  H  *  N  V  G  S  L  C  A  R  G  F  A  K  K  H  F  I  S  T  R  E  K  N  V  S  S  *  C  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77434" stop="77403"/>
                    <exon start="77201" stop="75749"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1485</number_coding_nucleotides>
                  <number_encoded_amino_acids>495</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHSPNKAAESSPNMLQLIQKVDQSRECGSGAELGHSEKKASSRMPEAAENSDESVGHHLRSQSAFSQGYGLQLGPPSRRASVRTHSLTSQRPIQAFSSSHYSHATVDTGEKNQGPMHPPHQAPSVLSPSDPSQEGLKNIGFGIAGSTNNVTSMYAMPGNLSPAFDSHSGFPYRGGQLKIPNVARTTAQLPTNQSLSVSFDKHASSHTEKGDSCRGSANGQSVEASLLAGADKLQDKPILSADKSQLSNTNRTVESIFTNQVTSQEPVSVSQALVSGIGQQGTYSKMSSGIWGTFPPPQQAFGSQYSKDSSHIFQSHQMNIVESSLSAPGRQSDQYLNRGSFASQIGTSSVNSLVSSEGEEQRPKESHSQQISVTNVDHIQKMNDSQGREPFIKYILGGSAANAASMQRDIEAFGRTLKPNLSNQNYSLLNQVQAIKHVEVDPSNRDFKRMKVADSSTGAPQFSSGDTEMLGVSVPEDLQRSISSQQGRKMSPHDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="93134" PGL_stop="97510"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93134" e_stop="93570"/>
            <exon e_start="94985" e_stop="95176"/>
            <exon e_start="96591" e_stop="96750"/>
            <exon e_start="96850" e_stop="96952"/>
            <exon e_start="97047" e_stop="97128"/>
            <exon e_start="97202" e_stop="97510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.739" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.438" e_score="1.000"/>
          <exon-intron don_prob="0.088" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93134" e_stop="93570" e_length="437"/>
          </exon>
          <intron i_serial="1" don_prob="0.739" acc_prob="0.604">
            <gDNA_intron_boundary i_start="93571" i_stop="94984" i_length="1414"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94985" e_stop="95176" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.937">
            <gDNA_intron_boundary i_start="95177" i_stop="96590" i_length="1414"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96591" e_stop="96750" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.899" acc_prob="0.438">
            <gDNA_intron_boundary i_start="96751" i_stop="96849" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96850" e_stop="96952" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.088" acc_prob="0.695">
            <gDNA_intron_boundary i_start="96953" i_stop="97046" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97047" e_stop="97128" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.926" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97129" i_stop="97201" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97202" e_stop="97510" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93134" stop="93570"/>
              <exon start="94985" stop="95176"/>
              <exon start="96591" stop="96750"/>
              <exon start="96850" stop="96952"/>
              <exon start="97047" stop="97128"/>
              <exon start="97202" stop="97510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAACTTCTCCTTCGAAGTTCGATCTACCCTCCTCCGATTGCTTCCATTTCACGTCGGACCTAGGGTTCCGATGATCTCATCCACAAGTTTTCAATGCCTTTGATTTTCTATTCTGCGAAGAATGACAAATTTTAGTGGAGCATTTTCCATTACTGAAGCTTCATCTCCCACCGAAGCAGGTCCGGCCCGAACCGGAACCGGAACTGCCGGTAGAGATGACTTCATATTCCGGTTGTCCAGCTCAGCAACTGCGTGCCATGGGTTCTGGCACGATGTGATACTGGTATTACCATCGGTTTTGTTCGTACTGTACTTAGGGTTTCATGCTAGGAGCAACATTAAGAAGCTCAGTCATCGTCGGTCTTTTGTAATGATTGGATACTATGGACTTTTGTGGTTTGCTGTTCTTTTAAACCTTTGTTGGTGCTTTCTTCAG : GCATGGCAGTGCACTCCAGGGAAGCAGGTGGCTTGGAATCTTTTATCGTTGTTTGCAACGTCTGCAATGCTATTTCTGGAGATTAGCATAGTGGCATTCTTACTTAAGGAGAATTATGCGAGCTGTTTGGAAACTTTATCACGTACTTTCATGGTTTCAGGCCTTTTTGTTGGCGTGGATTTACTATTAAAG : GCAATTTATATATTTGGACTTGGTATTCCACTTTTCCTTGACATGGAAATAGCTGATAGGGGGAAGTGGCGTGTCTGGAGCACCAACAAGCTTCTTCTTACTGCAGCTTATGGCTACATATTGTTTGTGCATTTCTCAAAGTGGAGAGATAAGCTGCCTC : CACGTCCAGCCTTTTACAATTACGTCATCGTCATGTTTGTGACAAGTGCTGTAATGTTATTTGCCTGTGGGCTTGCAGGCATTAGGGGTGGCTTTGGACTTTG : GTTGTATAATTTGACTGTAGTTTGTTATCACTCGCTTTATCTTCCATTTCTTTACGTGACGTTCCTGGCTGATTTTTTCAAG : GAGGAAGATTGGCTTCTGGACAGCGCATATTACTCAGAGATGAAAGATGCAGGGTTTTTTGATGCAGACGGGGAGTAAGCTTGTAAAACTGTAGACAAATAAGCAGTCCCAACATGTAATTGTAAATATTGACTGGCTGGTATTATGAGAAACAAAACTAATAGTTATTCAAGTGATTGCATTGTCTAGCTTATTTGCTGGTTGAGATCATTGATCCACTTGGCAAAAGTATAAGAAAGAACAACTAAAATGTTATTGTAAAGATATGTATTTTTGAATAGACCATGCTGGCTAAATATTTGGGTTGAA</gDNA_template>
            <first_frame> A  T  S  P  S  K  F  D  L  P  S  S  D  C  F  H  F  T  S  D  L  G  F  R  *  S  H  P  Q  V  F  N  A  F  D  F  L  F  C  E  E  *  Q  I  L  V  E  H  F  P  L  L  K  L  H  L  P  P  K  Q  V  R  P  E  P  E  P  E  L  P  V  E  M  T  S  Y  S  G  C  P  A  Q  Q  L  R  A  M  G  S  G  T  M  *  Y  W  Y  Y  H  R  F  C  S  Y  C  T  *  G  F  M  L  G  A  T  L  R  S  S  V  I  V  G  L  L  *  *  L  D  T  M  D  F  C  G  L  L  F  F  *  T  F  V  G  A  F  F  R :   H  G  S  A  L  Q  G  S  R  W  L  G  I  F  Y  R  C  L  Q  R  L  Q  C  Y  F  W  R  L  A  *  W  H  S  Y  L  R  R  I  M  R  A  V  W  K  L  Y  H  V  L  S  W  F  Q  A  F  L  L  A  W  I  Y  Y  *  R :   Q  F  I  Y  L  D  L  V  F  H  F  S  L  T  W  K  *  L  I  G  G  S  G  V  S  G  A  P  T  S  F  F  L  L  Q  L  M  A  T  Y  C  L  C  I  S  Q  S  G  E  I  S  C  L  :  H  V  Q  P  F  T  I  T  S  S  S  C  L  *  Q  V  L  *  C  Y  L  P  V  G  L  Q  A  L  G  V  A  L  D  F   : G  C  I  I  *  L  *  F  V  I  T  R  F  I  F  H  F  F  T  *  R  S  W  L  I  F  S  R :   R  K  I  G  F  W  T  A  H  I  T  Q  R  *  K  M  Q  G  F  L  M  Q  T  G  S  K  L  V  K  L  *  T  N  K  Q  S  Q  H  V  I  V  N  I  D  W  L  V  L  *  E  T  K  L  I  V  I  Q  V  I  A  L  S  S  L  F  A  G  *  D  H  *  S  T  W  Q  K  Y  K  K  E  Q  L  K  C  Y  C  K  D  M  Y  F  *  I  D  H  A  G  *  I  F  G  L   </first_frame>
            <second_frame>  Q  L  L  L  R  S  S  I  Y  P  P  P  I  A  S  I  S  R  R  T  *  G  S  D  D  L  I  H  K  F  S  M  P  L  I  F  Y  S  A  K  N  D  K  F  *  W  S  I  F  H  Y  *  S  F  I  S  H  R  S  R  S  G  P  N  R  N  R  N  C  R  *  R  *  L  H  I  P  V  V  Q  L  S  N  C  V  P  W  V  L  A  R  C  D  T  G  I  T  I  G  F  V  R  T  V  L  R  V  S  C  *  E  Q  H  *  E  A  Q  S  S  S  V  F  C  N  D  W  I  L  W  T  F  V  V  C  C  S  F  K  P  L  L  V  L  S  S   : G  M  A  V  H  S  R  E  A  G  G  L  E  S  F  I  V  V  C  N  V  C  N  A  I  S  G  D  *  H  S  G  I  L  T  *  G  E  L  C  E  L  F  G  N  F  I  T  Y  F  H  G  F  R  P  F  C  W  R  G  F  T  I  K   : G  N  L  Y  I  W  T  W  Y  S  T  F  P  *  H  G  N  S  *  *  G  E  V  A  C  L  E  H  Q  Q  A  S  S  Y  C  S  L  W  L  H  I  V  C  A  F  L  K  V  E  R  *  A  A  S :   T  S  S  L  L  Q  L  R  H  R  H  V  C  D  K  C  C  N  V  I  C  L  W  A  C  R  H  *  G  W  L  W  T  L  :  V  V  *  F  D  C  S  L  L  S  L  A  L  S  S  I  S  L  R  D  V  P  G  *  F  F  Q   : G  G  R  L  A  S  G  Q  R  I  L  L  R  D  E  R  C  R  V  F  *  C  R  R  G  V  S  L  *  N  C  R  Q  I  S  S  P  N  M  *  L  *  I  L  T  G  W  Y  Y  E  K  Q  N  *  *  L  F  K  *  L  H  C  L  A  Y  L  L  V  E  I  I  D  P  L  G  K  S  I  R  K  N  N  *  N  V  I  V  K  I  C  I  F  E  *  T  M  L  A  K  Y  L  G  *  </second_frame>
            <third_frame>   N  F  S  F  E  V  R  S  T  L  L  R  L  L  P  F  H  V  G  P  R  V  P  M  I  S  S  T  S  F  Q  C  L  *  F  S  I  L  R  R  M  T  N  F  S  G  A  F  S  I  T  E  A  S  S  P  T  E  A  G  P  A  R  T  G  T  G  T  A  G  R  D  D  F  I  F  R  L  S  S  S  A  T  A  C  H  G  F  W  H  D  V  I  L  V  L  P  S  V  L  F  V  L  Y  L  G  F  H  A  R  S  N  I  K  K  L  S  H  R  R  S  F  V  M  I  G  Y  Y  G  L  L  W  F  A  V  L  L  N  L  C  W  C  F  L  Q  :  A  W  Q  C  T  P  G  K  Q  V  A  W  N  L  L  S  L  F  A  T  S  A  M  L  F  L  E  I  S  I  V  A  F  L  L  K  E  N  Y  A  S  C  L  E  T  L  S  R  T  F  M  V  S  G  L  F  V  G  V  D  L  L  L  K  :  A  I  Y  I  F  G  L  G  I  P  L  F  L  D  M  E  I  A  D  R  G  K  W  R  V  W  S  T  N  K  L  L  L  T  A  A  Y  G  Y  I  L  F  V  H  F  S  K  W  R  D  K  L  P   : P  R  P  A  F  Y  N  Y  V  I  V  M  F  V  T  S  A  V  M  L  F  A  C  G  L  A  G  I  R  G  G  F  G  L  W :   L  Y  N  L  T  V  V  C  Y  H  S  L  Y  L  P  F  L  Y  V  T  F  L  A  D  F  F  K  :  E  E  D  W  L  L  D  S  A  Y  Y  S  E  M  K  D  A  G  F  F  D  A  D  G  E  *  A  C  K  T  V  D  K  *  A  V  P  T  C  N  C  K  Y  *  L  A  G  I  M  R  N  K  T  N  S  Y  S  S  D  C  I  V  *  L  I  C  W  L  R  S  L  I  H  L  A  K  V  *  E  R  T  T  K  M  L  L  *  R  Y  V  F  L  N  R  P  C  W  L  N  I  W  V  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93238" stop="93570"/>
                    <exon start="94985" stop="95176"/>
                    <exon start="96591" stop="96750"/>
                    <exon start="96850" stop="96952"/>
                    <exon start="97047" stop="97128"/>
                    <exon start="97202" stop="97279"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSILRRMTNFSGAFSITEASSPTEAGPARTGTGTAGRDDFIFRLSSSATACHGFWHDVILVLPSVLFVLYLGFHARSNIKKLSHRRSFVMIGYYGLLWFAVLLNLCWCFLQAWQCTPGKQVAWNLLSLFATSAMLFLEISIVAFLLKENYASCLETLSRTFMVSGLFVGVDLLLKAIYIFGLGIPLFLDMEIADRGKWRVWSTNKLLLTAAYGYILFVHFSKWRDKLPPRPAFYNYVIVMFVTSAVMLFACGLAGIRGGFGLWLYNLTVVCYHSLYLPFLYVTFLADFFKEEDWLLDSAYYSEMKDAGFFDADGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="105334" PGL_stop="97914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105334" e_stop="105214"/>
            <exon e_start="103658" e_stop="103591"/>
            <exon e_start="103512" e_stop="103347"/>
            <exon e_start="103244" e_stop="103182"/>
            <exon e_start="102832" e_stop="102737"/>
            <exon e_start="102470" e_stop="102303"/>
            <exon e_start="100140" e_stop="99970"/>
            <exon e_start="99024" e_stop="98875"/>
            <exon e_start="98809" e_stop="98678"/>
            <exon e_start="98269" e_stop="97914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.308" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105334" e_stop="105214" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.308" acc_prob="0.973">
            <gDNA_intron_boundary i_start="105213" i_stop="103659" i_length="1555"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103658" e_stop="103591" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.997">
            <gDNA_intron_boundary i_start="103590" i_stop="103513" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103512" e_stop="103347" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.981">
            <gDNA_intron_boundary i_start="103346" i_stop="103245" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103244" e_stop="103182" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="103181" i_stop="102833" i_length="349"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102832" e_stop="102737" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="102736" i_stop="102471" i_length="266"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102470" e_stop="102303" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102302" i_stop="100141" i_length="2162"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="100140" e_stop="99970" e_length="171"/>
          </exon>
          <intron i_serial="7" don_prob="0.887" acc_prob="0.982">
            <gDNA_intron_boundary i_start="99969" i_stop="99025" i_length="945"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99024" e_stop="98875" e_length="150"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.967">
            <gDNA_intron_boundary i_start="98874" i_stop="98810" i_length="65"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="98809" e_stop="98678" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.943">
            <gDNA_intron_boundary i_start="98677" i_stop="98270" i_length="408"/>
          </intron>
          <exon e_serial="10" e_score="0.986">
            <gDNA_exon_boundary e_start="98269" e_stop="97914" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105334" stop="105214"/>
              <exon start="103658" stop="103591"/>
              <exon start="103512" stop="103347"/>
              <exon start="103244" stop="103182"/>
              <exon start="102832" stop="102737"/>
              <exon start="102470" stop="102303"/>
              <exon start="100140" stop="99970"/>
              <exon start="99024" stop="98875"/>
              <exon start="98809" stop="98678"/>
              <exon start="98269" stop="97914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTATCTCACTTGGACCTACTTGTTTCGTAGATTG : ATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAGAACCTGGGATTCTAAATTCTTATTTGTCTAG : CTTGGTGCAAAGCACATTTGAGGATCTTGAAGACTCTGGATGCATCAAGGTTACCGAGGACAGTGTTGAACCACTGATGTTGGGCTCAATAGCATCTCAGTATTATCTGAAGTACACCACTGTATCAATGTTTGGCTCAAAAATAGGATCTGATACATCACTTGAG : GTTTTCCTACAAATACTGTCTGGTGCTTCTGAATATGATGAGCTCCCGGTGAGGCATAATGAG : GAAAACTACAATGAAAAATTAGCTGAGAAAGTTCCATATGCTGTCGACCACAATCGCCTGGATGATCCTCATGTGAAAGCAAATCTGCTCTTTCAG : GCTCATTTTTCCCAATCAGAGTTGCCAATCAGCGATTATGTCACAGACTTAAAGTCTGTGCTGGATCAAAGTATACGTGTTATCCAGGCTATGATAGATATTTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAG : GGCTTGTGGTTTGATAGAGACTCTCCTCTTTGGATGTTACCATGCATGACTGATGATCTACTCAACTCATTGCAAAAAAAAGGAATTGCTAGTATCCAGCAGCTGTTGGATTGCCCTTCAGAATCATTACGGGCTATCACTGGAAGTTCAGCTGCCTCGAAACTGTATCAG : GATATGCGGCATTTCCCTCGGATTCAAGTTCGACTTAAAATTCAGCCAAAGGAATCTAATGGTGGAAAGATTTTAACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCAAAAGCTTTTATCCCACGATATCCAAAG : GTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATACTTCCGCAAGTGAACTGTATGCTCTGAAGAGAGTGTCTTTCTCTGGTCGTTTGCAGACACACATGGATTTGCCATCCACTCTGACCAATTTCCAG : GGGATAAAGCTCATTCTAGTATCGGATTCTTACATTGGGTTTGAACAAGAACACTCTATTGAAGGATTGACTTAATCTGGAAGAAACTATACCAACTCCAGATTGTAATGCAATGCTCCCAAAATCAGGATTTGACTTTGTATAGCACAAAGGCTCACTTTTTCACAATCAGTTATAGAAGTTGTGTTACGGTCTACATTTGTAATGAGATATTGCTTTGTAATTTTCTTGAGTAATTGATCGGCATCCTTCATTTTTCTTTGTCATGTAGATCCAATTGTATATATGCATCAGGGTACTGTTGAAAGTCTTATACACACACCCTAATCAATATAGAGCTTTCCATTCAATGTCCA</gDNA_template>
            <first_frame> *  K  *  P  E  R  A  T  S  *  P  H  Q  R  *  D  C  Y  W  N  N  L  S  *  R  G  R  Y  A  L  S  H  L  D  L  L  V  S  *  I   : D  G  *  P  S  L  L  W  P  R  A  C  R  T  W  D  S  K  F  L  F  V  *  :  L  G  A  K  H  I  *  G  S  *  R  L  W  M  H  Q  G  Y  R  G  Q  C  *  T  T  D  V  G  L  N  S  I  S  V  L  S  E  V  H  H  C  I  N  V  W  L  K  N  R  I  *  Y  I  T  *   : G  F  P  T  N  T  V  W  C  F  *  I  *  *  A  P  G  E  A  *  *   : G  K  L  Q  *  K  I  S  *  E  S  S  I  C  C  R  P  Q  S  P  G  *  S  S  C  E  S  K  S  A  L  S   : G  S  F  F  P  I  R  V  A  N  Q  R  L  C  H  R  L  K  V  C  A  G  S  K  Y  T  C  Y  P  G  Y  D  R  Y  L  C  Q  Q  W  M  A  L  K  Y  H  Y  L  Y  A  S  V  A  N  G  H  A   : G  L  V  V  *  *  R  L  S  S  L  D  V  T  M  H  D  *  *  S  T  Q  L  I  A  K  K  R  N  C  *  Y  P  A  A  V  G  L  P  F  R  I  I  T  G  Y  H  W  K  F  S  C  L  E  T  V  S   : G  Y  A  A  F  P  S  D  S  S  S  T  *  N  S  A  K  G  I  *  W  W  K  D  F  N  L  E  H  *  I  G  R  C  K  Y  S  A  K  N  S  K  S  F  Y  P  T  I  S  K   : G  K  R  *  S  L  V  V  S  P  L  *  Y  F  R  K  *  T  V  C  S  E  E  S  V  F  L  W  S  F  A  D  T  H  G  F  A  I  H  S  D  Q  F  P   : G  D  K  A  H  S  S  I  G  F  L  H  W  V  *  T  R  T  L  Y  *  R  I  D  L  I  W  K  K  L  Y  Q  L  Q  I  V  M  Q  C  S  Q  N  Q  D  L  T  L  Y  S  T  K  A  H  F  F  T  I  S  Y  R  S  C  V  T  V  Y  I  C  N  E  I  L  L  C  N  F  L  E  *  L  I  G  I  L  H  F  S  L  S  C  R  S  N  C  I  Y  A  S  G  Y  C  *  K  S  Y  T  H  T  L  I  N  I  E  L  S  I  Q  C  P </first_frame>
            <second_frame>  E  S  S  L  R  E  Q  L  H  D  H  I  N  A  E  I  V  T  G  T  I  S  H  K  E  D  A  M  H  Y  L  T  W  T  Y  L  F  R  R  L  :  M  V  N  P  A  Y  Y  G  L  E  H  A  E  P  G  I  L  N  S  Y  L  S  S :   L  V  Q  S  T  F  E  D  L  E  D  S  G  C  I  K  V  T  E  D  S  V  E  P  L  M  L  G  S  I  A  S  Q  Y  Y  L  K  Y  T  T  V  S  M  F  G  S  K  I  G  S  D  T  S  L  E  :  V  F  L  Q  I  L  S  G  A  S  E  Y  D  E  L  P  V  R  H  N  E  :  E  N  Y  N  E  K  L  A  E  K  V  P  Y  A  V  D  H  N  R  L  D  D  P  H  V  K  A  N  L  L  F  Q  :  A  H  F  S  Q  S  E  L  P  I  S  D  Y  V  T  D  L  K  S  V  L  D  Q  S  I  R  V  I  Q  A  M  I  D  I  C  A  N  S  G  W  L  S  S  T  I  T  C  M  H  L  L  Q  M  V  M  Q  :  G  L  W  F  D  R  D  S  P  L  W  M  L  P  C  M  T  D  D  L  L  N  S  L  Q  K  K  G  I  A  S  I  Q  Q  L  L  D  C  P  S  E  S  L  R  A  I  T  G  S  S  A  A  S  K  L  Y  Q  :  D  M  R  H  F  P  R  I  Q  V  R  L  K  I  Q  P  K  E  S  N  G  G  K  I  L  T  L  N  I  R  L  E  D  A  N  T  Q  R  R  T  A  K  A  F  I  P  R  Y  P  K  :  V  K  D  E  A  W  W  L  V  L  C  N  T  S  A  S  E  L  Y  A  L  K  R  V  S  F  S  G  R  L  Q  T  H  M  D  L  P  S  T  L  T  N  F  Q  :  G  I  K  L  I  L  V  S  D  S  Y  I  G  F  E  Q  E  H  S  I  E  G  L  T  *  S  G  R  N  Y  T  N  S  R  L  *  C  N  A  P  K  I  R  I  *  L  C  I  A  Q  R  L  T  F  S  Q  S  V  I  E  V  V  L  R  S  T  F  V  M  R  Y  C  F  V  I  F  L  S  N  *  S  A  S  F  I  F  L  C  H  V  D  P  I  V  Y  M  H  Q  G  T  V  E  S  L  I  H  T  P  *  S  I  *  S  F  P  F  N  V   </second_frame>
            <third_frame>   K  V  A  *  E  S  N  F  M  T  T  S  T  L  R  L  L  L  E  Q  S  L  I  K  R  T  L  C  I  I  S  L  G  P  T  C  F  V  D  * :   W  L  T  Q  L  T  M  A  *  S  M  Q  N  L  G  F  *  I  L  I  C  L   : A  W  C  K  A  H  L  R  I  L  K  T  L  D  A  S  R  L  P  R  T  V  L  N  H  *  C  W  A  Q  *  H  L  S  I  I  *  S  T  P  L  Y  Q  C  L  A  Q  K  *  D  L  I  H  H  L  R :   F  S  Y  K  Y  C  L  V  L  L  N  M  M  S  S  R  *  G  I  M  R :   K  T  T  M  K  N  *  L  R  K  F  H  M  L  S  T  T  I  A  W  M  I  L  M  *  K  Q  I  C  S  F  R :   L  I  F  P  N  Q  S  C  Q  S  A  I  M  S  Q  T  *  S  L  C  W  I  K  V  Y  V  L  S  R  L  *  *  I  F  V  P  T  V  D  G  S  Q  V  P  L  P  V  C  I  C  C  K  W  S  C  R :   A  C  G  L  I  E  T  L  L  F  G  C  Y  H  A  *  L  M  I  Y  S  T  H  C  K  K  K  E  L  L  V  S  S  S  C  W  I  A  L  Q  N  H  Y  G  L  S  L  E  V  Q  L  P  R  N  C  I  R :   I  C  G  I  S  L  G  F  K  F  D  L  K  F  S  Q  R  N  L  M  V  E  R  F  *  P  *  T  L  D  W  K  M  Q  I  L  S  E  E  Q  Q  K  L  L  S  H  D  I  Q  R :   *  K  M  K  L  G  G  *  S  F  V  I  L  P  Q  V  N  C  M  L  *  R  E  C  L  S  L  V  V  C  R  H  T  W  I  C  H  P  L  *  P  I  S  R :   G  *  S  S  F  *  Y  R  I  L  T  L  G  L  N  K  N  T  L  L  K  D  *  L  N  L  E  E  T  I  P  T  P  D  C  N  A  M  L  P  K  S  G  F  D  F  V  *  H  K  G  S  L  F  H  N  Q  L  *  K  L  C  Y  G  L  H  L  *  *  D  I  A  L  *  F  S  *  V  I  D  R  H  P  S  F  F  F  V  M  *  I  Q  L  Y  I  C  I  R  V  L  L  K  V  L  Y  T  H  P  N  Q  Y  R  A  F  H  S  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0065P01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105333" stop="105214"/>
                    <exon start="103658" stop="103591"/>
                    <exon start="103512" stop="103347"/>
                    <exon start="103244" stop="103182"/>
                    <exon start="102832" stop="102737"/>
                    <exon start="102470" stop="102303"/>
                    <exon start="100140" stop="99970"/>
                    <exon start="99024" stop="98875"/>
                    <exon start="98809" stop="98678"/>
                    <exon start="98269" stop="98195"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESSLREQLHDHINAEIVTGTISHKEDAMHYLTWTYLFRRLMVNPAYYGLEHAEPGILNSYLSSLVQSTFEDLEDSGCIKVTEDSVEPLMLGSIASQYYLKYTTVSMFGSKIGSDTSLEVFLQILSGASEYDELPVRHNEENYNEKLAEKVPYAVDHNRLDDPHVKANLLFQAHFSQSELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSTITCMHLLQMVMQGLWFDRDSPLWMLPCMTDDLLNSLQKKGIASIQQLLDCPSESLRAITGSSAASKLYQDMRHFPRIQVRLKIQPKESNGGKILTLNIRLEDANTQRRTAKAFIPRYPKVKDEAWWLVLCNTSASELYALKRVSFSGRLQTHMDLPSTLTNFQGIKLILVSDSYIGFEQEHSIEGLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 20 chains have been computed
$ 
$ memory statistics:
$ 21032 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 1912 bytes was the average size of a spliced alignment
$ 17392 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1739 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 21 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:40:37
-->
