<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:26:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543175" ref_strand="+" ref_description="SGN-E543175 [TUS-64-N17]">
      <seq>gtaaatatgatccttttgggcgacaaattgctatgtaaaatcaaaattctccattgaaattgctctcaggaaatggcgaaagattcaccaaaaactcccaagtcgaggtcggcgacgaatccatcagttggcgtttgggcagtacagtgtgaaaaatgcttgaaatggaggaggattgcgacacaggaacagtttgaagatatcagaagtaggtttactgaagaaccctttaactgccccaatggtacttgtgatgatcctgcagacattgagtacgatgcttctcgaacttgggctattgacaagcccaatctccctaaaaccccatctggctttaagagagaattgtacctcaggagagattactctaagatggatacttattatttcactcctttagggaagaaactcagatccgttactgatgttactacttttcttgaacaaaatccccagttatctgacgttaaaccctcagatttcagctttaccagccccaaagttatggatgacaccataccctctaccgctcttcttgccaactctcacaagaagggtgtagctagtagcactaaatgactggatggatggagctggacttgttcatatgcttagtagatgcactgtttagagtcttaaaggttcaacttattcgccatgtattgttattttccatctgcaaaatacatttcaactgctctgtttacttttcatggtgatggattttggtgtgacaaaaaggaaatttgttagccttctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4426" stop="5923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4726" g_stop="4827" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4828" i_stop="4962" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4963" g_stop="5631" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="770" r_length="668" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E543175" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4726" e_stop="4827"/>
          <exon e_start="4963" e_stop="5631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAGGTAAATTTTATACTTGCTGTTCTGTTTTGCAAAAATGCTACCGCTACTTGTAGCTTTTTTGCTTTAATTACAGATCTGTCGCCTGATTTCCGAATGGCTGTTCAGGTTTTGATATATACTTTGTTTTTGTGACAGTCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTGGTTGTGACAAAAAGGAAAATTTGTTAGCCTTCTTTACTTTGAGT</genome_strand>
        <mrna_strand>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAG.......................................................................................................................................TCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTTGGTGTGACAAAAAGG-AAATTTGTTAGCCTTCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543174" ref_strand="+" ref_description="SGN-E543174 [TUS-64-N17](-)">
      <seq>gtaaatatgatccttttgggcgacaaattgctatgtaaaatcaaaattctccattgaaattgctctcaggaaatggcgaaagattcaccaaaaactcccaagtcgaggtcggcgacgaatccatcagttggcgtttgggcagtacagtgtgaaaaatgcttgaaatggaggaggattgcgacacaggaacagtttgaagatatcagaagtaggtttactgaagaaccctttaactgccccaatggtacttgtgatgatcctgcagacattgagtacgatgcttctcgaacttgggctattgacaagcccaatctccctaaaaccccatctggctttaagagagaattgtacctcaggagagattactctaagatggatacttattatttcactcctttagggaagaaactcagatccgttactgatgttactacttttcttgaacaaaatccccagttatctgacgttaaaccctcagatttcagctttaccagccccaaagttatggatgacaccataccctctaccgctcttcttgccaactctcacaagaagggtgtagctagtagcactaaatgactggatggatggagctggacttgttcatatgcttagtagatgcactgtttagagtcttaaaggttcaacttattcgccatgtattgttattttccatctgcaaaatacatttcaactgctctgtttacttttcatggtgatggatttggttgtgacaaaaaggaaaatttgttagccttcttaaaaaaaaagaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4426" stop="5923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4726" g_stop="4827" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4828" i_stop="4962" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4963" g_stop="5609" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="749" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="762" polyA_stop="781"/>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E543174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4726" e_stop="4827"/>
          <exon e_start="4963" e_stop="5609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAGGTAAATTTTATACTTGCTGTTCTGTTTTGCAAAAATGCTACCGCTACTTGTAGCTTTTTTGCTTTAATTACAGATCTGTCGCCTGATTTCCGAATGGCTGTTCAGGTTTTGATATATACTTTGTTTTTGTGACAGTCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTGGTTGTGACAAAAAGGAAAATTT</genome_strand>
        <mrna_strand>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAG.......................................................................................................................................TCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTGGTTGTGACAAAAAGGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301957" ref_strand="+" ref_description="SGN-E301957 [cLEX-3-M18]">
      <seq>taaatatgatccttttgggcgacaaattgctatgtaaaatcaaaattctccattgaaattgctctcaggaaatggcgaaagattcaccaaaaactcccaagtcgaggtcggcgacgaatccatcagttggcgtttgggcagtacagtgtgaaaaatgcttgaaatggaggaggattgcgacacaggaacagtttgaagatatcagaagtaggtttactgaagaaccctttaactgccccaatggtacttgtgatgatcctgcagacattgagtacgatgcttctcgaacttgggctattgacaagcccaatctccctaaaaccccatctggctttaagagagaattgtacctcangagagattactctaagatggatacttattatttcactcctttagggaagaaactcagatccgttactgatgttactacttttcttgaacaaaatccccagttatctgacgttaaaccctcagatttcagctttaccagccccaaagttatggatgacaccataccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4427" stop="5683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4727" g_stop="4827" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4828" i_stop="4962" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4963" g_stop="5383" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="522" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E301957" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4727" e_stop="4827"/>
          <exon e_start="4963" e_stop="5383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAGGTAAATTTTATACTTGCTGTTCTGTTTTGCAAAAATGCTACCGCTACTTGTAGCTTTTTTGCTTTAATTACAGATCTGTCGCCTGATTTCCGAATGGCTGTTCAGGTTTTGATATATACTTTGTTTTTGTGACAGTCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCT</genome_strand>
        <mrna_strand>TAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAG.......................................................................................................................................TCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCANGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324994" ref_strand="+" ref_description="SGN-E324994 [cTOC-11-L14]">
      <seq>aaaaactcccaagtcgaggtcggcgacgaatccatcagtgggcgtttgggcagtacagtgtgaaaaatgcttgaaatggaggaggattgcgacacaggaacagtttgaagatatcagaagtaggtttactgaagaaccctttaactgccccaatggtacttgtgatgatcctgcagacattgagtacgatgcttctcgaacttgggctattgacaagcccaatctccctaaaaccccatctggctttaaaagagaattgtacctcacgagagattactctaagatggatacttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4661" stop="5547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4815" g_stop="4827" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4828" i_stop="4962" i_length="135">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4963" g_stop="5247" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="298" r_length="285" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E324994" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4815" e_stop="4827"/>
          <exon e_start="4963" e_stop="5247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCCCAAGGTAAATTTTATACTTGCTGTTCTGTTTTGCAAAAATGCTACCGCTACTTGTAGCTTTTTTGCTTTAATTACAGATCTGTCGCCTGATTTCCGAATGGCTGTTCAGGTTTTGATATATACTTTGTTTTTGTGACAGTCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTAT</genome_strand>
        <mrna_strand>AAAAACTCCCAAG.......................................................................................................................................TCGAGGTCGGCGACGAATCCATCAGTGGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAAAGAGAATTGTACCTCACGAGAGATTACTCTAAGATGGATACTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551182" ref_strand="+" ref_description="SGN-E551182 [TUS-55-K6]">
      <seq>aaagtcaattcgatgagcattgatttggtacctattaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaaacaacttgaaccttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7585" stop="10944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7885" g_stop="8056" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8410" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="449" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="521" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="593" r_length="72" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E551182" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7885" e_stop="8056"/>
          <exon e_start="8134" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG</genome_strand>
        <mrna_strand>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAAACAACTTG-AACCTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688989" ref_strand="+" ref_description="SGN-E688989 [t3_tus_55_K06]">
      <seq>aaagtcaattcgatgagcattgatttggtacctattaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaaacaacttgaaccttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7585" stop="10944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7885" g_stop="8056" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8410" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="449" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="521" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="593" r_length="72" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E688989" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7885" e_stop="8056"/>
          <exon e_start="8134" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG</genome_strand>
        <mrna_strand>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAAACAACTTG-AACCTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262768" ref_strand="+" ref_description="SGN-E262768 [cLEG-63-D4]">
      <seq>aagtcaattcgatgagcattgatttggtacctattaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7586" stop="8628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7886" g_stop="8056" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8328" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="366" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E262768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7886" e_stop="8056"/>
          <exon e_start="8134" e_stop="8328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATT</genome_strand>
        <mrna_strand>AAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369179" ref_strand="+" ref_description="SGN-E369179 [TUS-23-G22]">
      <seq>ttaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcaagattgctggattgtaatagttgtagatgcaaagtatttccatgtgaataacagaccttttangtgttgaactatttatacaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7619" stop="11700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7919" g_stop="8056" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8264" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="269" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8342" g_stop="8410" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="338" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="483" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11186" g_stop="11400" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="698" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E369179" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7919" e_stop="8056"/>
          <exon e_start="8134" e_stop="8264"/>
          <exon e_start="8342" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
          <exon e_start="11186" e_stop="11400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTC</genome_strand>
        <mrna_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTANGTGTTGAACTATTTATACAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448442" ref_strand="+" ref_description="SGN-E448442 [cSTS-3-A2]">
      <seq>tttgatgtggtacatattaaagttgcttgcttattgcaatttaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttgggagaagacaaccccacatcatggaaatagtagccaagttgcagaaacagtttatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaaattgcaagatgagagcaacccagactttgtttttgaagtagttacacttttctttgaagattcagaaaaacttatcaacaatctggcagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccatcagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtatggctttcaaaaccttctgcgaagagaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7616" stop="10942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7919" g_stop="8056" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="172" r_length="132" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.863" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8264" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="303" r_length="131" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.606" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8342" g_stop="8410" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="372" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="444" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10572" g_stop="10643" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="516" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E448442" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7919" e_stop="8056"/>
          <exon e_start="8134" e_stop="8264"/>
          <exon e_start="8342" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGAT</genome_strand>
        <mrna_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTGGGAGAAGAC-AACCC-CA-C--A-TCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTTATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAAATTGCAAGATGAGAGCAACCCAGACTTTGTTTTTGAAGTAGTTACACTTTTCTTTGAAGATTCAGAAAAACTTATCAACAATCTGGCAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCATCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTATGGCTTTCAAAACCTTCTGCGAAGAGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422490" ref_strand="+" ref_description="SGN-E422490 [STM-40-D13]">
      <seq>attgatttggtacatattaaagttgcttgcttattgcaatttaaaattagtatatgaaatctgtagatctgcaataaagtttgagtttgggagaagacaaccccacatcatggaaatagtagccaagttgcagaaacagtttatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaaattgcaagatgagagcaacccagactttgtttttgaagtagttacacttttctttgaagattcagaaaaacttatcaacaatctggcagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccatcagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtatggctttcaaaaccttctgcgaagagaaaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaacttgaaaccttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7616" stop="10940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7919" g_stop="8056" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="172" r_length="132" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.863" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8264" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="303" r_length="131" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.606" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8342" g_stop="8410" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="372" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="443" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10572" g_stop="10640" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="511" r_length="68" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E422490" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7919" e_stop="8056"/>
          <exon e_start="8134" e_stop="8264"/>
          <exon e_start="8342" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGAT</genome_strand>
        <mrna_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTGGGAGAAGAC-AACCC-CA-C--A-TCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTTATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAAATTGCAAGATGAGAGCAACCCAGACTTTGTTTTTGAAGTAGTTACACTTTTCTTTGAAGATTCAGAAAAACTTATCAACAATCTGGCAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCATCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTATGGCTTTCAAAACCTTCTGCGAAGAGAA-AACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAAC-AACTTGAAACCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243526" ref_strand="+" ref_description="SGN-E243526 [cLED-34-L24]">
      <seq>ttaaaattagtatatgaaatctgtggatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaaagtgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccatactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagatccagcataggtgcacaaagagttaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcacgtgaaacatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7619" stop="10908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7919" g_stop="8056" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8264" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="269" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8342" g_stop="8410" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="338" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10572" g_stop="10608" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="447" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E243526" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7919" e_stop="8056"/>
          <exon e_start="8134" e_stop="8264"/>
          <exon e_start="8342" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATAT</genome_strand>
        <mrna_strand>TTAAAATTAGTATATGAAATCTGTGGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAAGTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCATACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGATCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTTAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCACGTGAAACATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294426" ref_strand="+" ref_description="SGN-E294426 [cLET-14-K8]">
      <seq>attagtatatgaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagccacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7624" stop="8982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7924" g_stop="8056" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8264" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="264" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8342" g_stop="8410" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="333" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8630" g_stop="8682" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="386" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E294426" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7924" e_stop="8056"/>
          <exon e_start="8134" e_stop="8264"/>
          <exon e_start="8342" e_stop="8410"/>
          <exon e_start="8630" e_stop="8682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCG</genome_strand>
        <mrna_strand>ATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCCACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285016" ref_strand="+" ref_description="SGN-E285016 [cLER-19-B13]">
      <seq>gaaatctgtagatctgcaataaagtttgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagattgttgagagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7634" stop="11591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7934" g_stop="8056" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8264" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="254" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8342" g_stop="8410" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="323" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="395" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="468" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11186" g_stop="11291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="574" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E285016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7934" e_stop="8056"/>
          <exon e_start="8134" e_stop="8264"/>
          <exon e_start="8342" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
          <exon e_start="11186" e_stop="11291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAA</genome_strand>
        <mrna_strand>GAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATTGTTGAGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207565" ref_strand="+" ref_description="SGN-E207565 [cLEC-32-E3]">
      <seq>gagaactagtctcgagtttttgagtcttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7656" stop="11502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7949" g_stop="8056" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8264" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="240" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8342" g_stop="8410" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="309" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="381" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="454" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11186" g_stop="11202" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="471" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E207565" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7949" e_stop="8056"/>
          <exon e_start="8134" e_stop="8264"/>
          <exon e_start="8342" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
          <exon e_start="11186" e_stop="11202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATAAAGT-TTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTT</genome_strand>
        <mrna_strand>GAGAACTAGTCTCGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303728" ref_strand="+" ref_description="SGN-E303728 [cLEX-4-C19]">
      <seq>ttctcccccacatcaaattcatggaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcaagattgctggattgtaatagttgtagatgcaaagtatttccatgtgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7674" stop="11664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7974" g_stop="8056" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8264" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="214" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8342" g_stop="8410" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="283" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="355" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="428" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11186" g_stop="11364" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="607" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E303728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7974" e_stop="8056"/>
          <exon e_start="8134" e_stop="8264"/>
          <exon e_start="8342" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
          <exon e_start="11186" e_stop="11364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATA</genome_strand>
        <mrna_strand>TTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262813" ref_strand="+" ref_description="SGN-E262813 [cLEG-59-A23]">
      <seq>gaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcagattgctggattgtaatagttgtagatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7697" stop="11646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7997" g_stop="8056" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8410" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="337" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="482" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11186" g_stop="11346" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="641" r_length="159" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E262813" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7997" e_stop="8056"/>
          <exon e_start="8134" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
          <exon e_start="11186" e_stop="11346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAA</genome_strand>
        <mrna_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGC-AATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTC-AGATTGCTGGATTGTAATAGTTGTAGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258501" ref_strand="+" ref_description="SGN-E258501 [cLEG-47-E9]">
      <seq>gaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7697" stop="11600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7997" g_stop="8056" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8410" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="337" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="482" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11186" g_stop="11300" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="597" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E258501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7997" e_stop="8056"/>
          <exon e_start="8134" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
          <exon e_start="11186" e_stop="11300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGT</genome_strand>
        <mrna_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256596" ref_strand="+" ref_description="SGN-E256596 [cLEG-38-J15]">
      <seq>gaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7697" stop="11563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7997" g_stop="8056" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8410" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="337" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="482" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11186" g_stop="11263" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="560" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E256596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7997" e_stop="8056"/>
          <exon e_start="8134" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
          <exon e_start="11186" e_stop="11263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACA</genome_strand>
        <mrna_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257510" ref_strand="+" ref_description="SGN-E257510 [cLEG-45-E9]">
      <seq>gaaatagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtagtcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7697" stop="11505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7997" g_stop="8056" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8410" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="337" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="482" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11186" g_stop="11205" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="502" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E257510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7997" e_stop="8056"/>
          <exon e_start="8134" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
          <exon e_start="11186" e_stop="11205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGC</genome_strand>
        <mrna_strand>GAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257454" ref_strand="+" ref_description="SGN-E257454 [cLEG-45-F9]">
      <seq>atagtagccaagttgcagaaacagttcatggacttcatttcagctttgtaccgtgagagattcttggatgatcagtttcttcagcttcagaatttgcaagatgagagcaacccagactttgttcgtgaagtagtttcacttttctttgtagattcagaaaaccttatcaacaatctgacagcagctctgtgagaaataaactctttttattgtttacctttaacagaaatattggatcattagtttattatttggtcaattgtaatcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7700" stop="8700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8000" g_stop="8056" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8134" g_stop="8400" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="324" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E257454" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8000" e_stop="8056"/>
          <exon e_start="8134" e_stop="8400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAGGTGGGTTGGTTTTCTTTTTTCTTTTTACTATATTAGGGAATTTTTCTGATATGAGTTTTCTTTTGTCTTTTGAAAAGAGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTA</genome_strand>
        <mrna_strand>ATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG.............................................................................AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAATCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369178" ref_strand="+" ref_description="SGN-E369178 [TUS-23-G22](-)">
      <seq>aaaccttatcaacaatctgacagcagctcttcaacaacaggttgtagattttaagcaagttgattcccatgtccaccagttcaagggtagcagttccagcataggtgcacaaagagtaaagaatgcttgtgtggcttttaaaaccttctgcgaagggaagaacattgaagggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcaagattgctggattgtaatagttgtagatgcaaagtatttccatgtgaataacagaccttttaggtgttgaactatttatacaattctagttgttgaactttttaacccttgaatggtttactgtgctttagccattaagtagtagaacttttcagcttgttaagtagtcgtattatattgtaaatgcacatggaagtttgtttgactgcttgatatatgagtaggtagtttcaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7935" stop="11855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8235" g_stop="8264" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8342" g_stop="8410" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="99" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8630" g_stop="8701" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="171" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10572" g_stop="10644" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="244" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11186" g_stop="11555" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="614" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E369178" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8235" e_stop="8264"/>
          <exon e_start="8342" e_stop="8410"/>
          <exon e_start="8630" e_stop="8701"/>
          <exon e_start="10572" e_stop="10644"/>
          <exon e_start="11186" e_stop="11555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAGGTATCCAATTTTCCTTTTCTGCCATACATTTTTAGGTTTTTGTCATTGACTAAACTACTTTAATTGATGCTTGAAGTTGTATCTTTTTGGTAGACAAGTGATACATCCTGAGTGAATTTTATTGTGATCAAAGATTTAGCCGAATTTAGGTTATTGAATGGAAGTCTTTTAGGAGTTAGTAGTATCCCCATTAATCAGAATCTCTGTTATATTTTGCAGCATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGGGTGGGTATAGCTTGATTCTTTTACAATTTTTGCCTTTATCTATCTATCTATCTATTTGTATTATAAGGGTTTGGGTTTTTAGAAGATTTACATAAAAAGATTTGACTTTGTAGACATTAAGAAGACATGTTGGAAATTTTGTTTTCTACCATGTAAATCATAAGTCATTGGTTTTTTTTTTGCGTATAGTGATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATAAAGTGGTTAATTGGTATCAATGCGTAGAAAGATGATATTAGATTTACATACAGACAACATCCAAGGGTGTGTCCTTCTGGTCAATGAAGTGGGCTAAGAACCACGAGATCTCGGGTTAAAATCCCAGTAGAGACAAAAACACTAGGTGTTCTCTTCCCACCCTAGACTTGAGAACCATAAGGTCTCGAGTGGCAGGCATCCCGTGGAATTAGTCGAGGAACACGCAAGTTGGTCTGGACACAAGATTATAAAAAAAAAATTAAGATTTACCTATGATCATGTGGTATATTCTTGGTCGCACACAAAATACATCTATAGGGCATTTTCTAAATCTGACATTATTTGATGCTAATATGGCTTTTCATTTACGAAGGTACATGTCTAGAACCTTCCAATTTATCTTTTTTCAGACATTTCTACTACATTATAATTGCAGTACCAATGTTGTCGTGTCTTGGTGGCCCCACCTCAAGCATCCTGATCTCTGTGTGTTTCTGGCTCTCTTTTGGGACATTATTTACATAGTTCCAGTAACTAAACAAAACGAATCACGCCTTCTTGGAGTTCTATGTATACAGTCACTGCAGAATAAAGAACAGAGGGATTTGAGCAGAGATGTTTCTGGTTGGTAAAAAAATAAAATTGGAGTGTAACATGCCACTCCATTCTTGTTCAACTCTTATGCTTGAAATTATCAGATCACAACAATAGACCAGCTTCACTACTGAGTCTCTAAATCTTCGCAAAATTATTGTTGCCCCTTAGGAGGACACCAGTATGAACTGCCTCTGTGCAGAGATCTTTTCAAGTACCATCTGCTCTTTTTTCTGCCTCAAATCTGCTTAAGTCTAAGTATTCTCTTTCTTCACAGTTTGAACATGAAAGGCCAATTTAATTGAAGCATCTATTAGTAAAATCTGGTTCATTTTGTTAAAGACCTCATTTAAGAGCTAGAAAAGGTATGCCCTAACACTTAAAGATGACGTGGATTACCATACCTGCTGGCATATGGTGGAGTATTTGGAAGGATATGAATAGAAGACGTTTTGGACACAAGACCTCAATCTTGGTGGAGTATCTACACATACCGTATTTCTCCAAAAAAATAAAATAAAAAAATCTAGCATTTCTAGTTATGTTATAGTATTATATTGGATGAACTATTGTTCTTTTATACTTGCCATTCTCAGCCAAAAAAAAAAGTAAATTGGAGAAACTATTGAATATACATGTATCAACTGTTGTGTAAATACATACGGAAGTAACATCAGTCAGCTAGTAAGACCATATAGCTGTGGCGTGGGTATCTAGAATAGTAACAGGTATTACTTTTTGATTACTTTCCTCGTAGGAACTTTCAAACTCTAATTATCATTTTTGATTACTTTTATGTTATCTCAAAAAAGCTAAAGCCTTTAATTTATTAATTGCTTTCAAACATGGAATATATAATCGGAAAATGGTAGTAAGAAACAACGAGACCCATATTGTAACCTTGGTTAATTTGGGATTCAAGCCTTGATGCTGTCTTGTTATTGTGTGGTGCATCTAAGTTTGATTTTTTGAGGCTCTACTCTTATTTATCTTTGTAAATTATTTTTATTTCCTTGTGCAGGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAA</genome_strand>
        <mrna_strand>AAACCTTATCAACAATCTGACAGCAGCTCT.............................................................................TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG...........................................................................................................................................................................................................................CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217356" ref_strand="+" ref_description="SGN-E217356 [cLEL-21-A13](-)">
      <seq>ggtgtgtgcaatgtctgcagcaggtgaaacatgaatattttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacatcctgagagaaagatagtagagagaaaagttggcagtagagatgagattcaagattgctggattgtaatagttgtagatgcaaagtatttccatgtgaataacagaccttttaggtgttgaactatttatacaattctagttgttgaactttttaacccttgaatggtttactgtgctttagccattaagtagtagaacttttcagcttgttaagtagtcgtattatattgtaaatgcacatggaagtttgtttgactgcttcatatatgagtaggtagtttcaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10271" stop="11855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10571" g_stop="10644" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11186" g_stop="11567" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="456" r_length="382" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E217356" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10571" e_stop="10644"/>
          <exon e_start="11186" e_stop="11567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</genome_strand>
        <mrna_strand>GGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTCATATATGAGTAGGTAGTTTCAATAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217277" ref_strand="+" ref_description="SGN-E217277 [cLEL-21-A15](-)">
      <seq>tttcttgtgaagaacaaacttgaaaccttgatgatgctggagaagcaaatcttggcggctggtggtaggattcctgacctgtcatagctaggtgctaatgatttgaagtccacgtcctcaccgtaagatagtagagaggaaagttggcagtagagattagattcaagagtgctggagtgtaatagttgtagatgcaaagtatttccatgtgaataacagaccttttaggtgttgaactatttatacaattctagttgttgaactttttaacccttgaatggtttactgtgctttagccattaagtagtagaacttttcagcttgttaagtagtcgtattatattgtaaatgcacatggaagtttgtttgactgcttgatatatgagtaggtagtttcaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10309" stop="11855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10609" g_stop="10644" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11186" g_stop="11567" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="418" r_length="382" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E217277" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10609" e_stop="10644"/>
          <exon e_start="11186" e_stop="11567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGTGAAGAACAAACTTGAAACCTTGATGATGGTAAGTACTCTTCTACAAATGTTTGGGATTTCCAGGTCTCAGTACCATACTGTTGAAGAAAATGCTATTTAGTACATGATGCTTAAATTTCAGTGGGTCAAGTGTGGGGATTCTGATGCTCTGCCAATTTAGATCTTTCACAAATTATTTCGCGATAAAGTTTGACAGGGTACGTGTTATAGGTCATACTATTTGACAAGCAATACCTAGAGGCTGGTGTTTGATAATGAAACAGCCCTCTCAGCATCCCCTCATTTGATTTAAACTTTTCCTCTCAAGTAATGTTGGAGTCCATGATTTCCTAGCAAGAAAATTTTTCATGTTTTCTGCTTATAACTAGTTTAAAAAATTTTAAGTTTTCTTGTCACTTCCTTTTACCTGTTTAAAGCCAGGTTTCTGACATTGAATTCTCTTCCATGATTAGGCTTAAATAAAAACTTTTTATTCCAAAGATGTTGCAACTATGTCCAATACATGAATAGTTATTTTTTTTCTAAGTCTGTAAAATCAGCTAAATTGCAGCTTGTTTATAAAATTGCAGCTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</genome_strand>
        <mrna_strand>TTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACGTCCTCACCGTAAGATAGTAGAGAGGAAAGTTGGCAGTAGAGATTAGATTCAAGAGTGCTGGAGTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317141" ref_strand="+" ref_description="SGN-E317141 [cTOA-27-J24]">
      <seq>ttcttctctcctaaaccattaatttcagccataaccaacaaagcttttgctttcttgtgaagcattcctacttttttgcctttgctgttggcaaaaaagaaataaccaacttatataagcctttcctatcattcttctcttcagctatacgataataatgataccattctttcttctgcttcttctgcagagcactagtttctctgtacatgccattttagacccaattgatttcttagctttacaagcgattcgaaaaggcttggatgatttgcccggttccaactattttgcttcctgggatttcacttcggagccctgtaacttcgccggagtttactgcgatggagataaagtgatcgccttgaatctcggtgatcccagagccggagcaccagggttaactggaaacttggatccttctattggaaaactctctgctcttgcggagttcacggtggttccgggtcggataactggtccattgcccgaaagtttttctcagttgaagaagctgagatttctaggagttagccggaactttctctccggtgatattccggcgtcattaggccttctccgggagctacaaactcttgatcttagtttcaatcagctgaccgggagcatcccttgggctattggagctcttccggcattgtccaacattatactgtgtcacaaccacttgtccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13996" stop="15290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14296" g_stop="14990" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E317141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14296" e_stop="14990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCTCCTAAACCATTAATTTCAGCCATAACCAACAAAGCTTTTGCTTTCTTGTGAAGCATTCCTACTTTTTTGCCTTTGCTGTTGGCAAAAAAGAAATAACCAACTTATATAAGCCTTTCCTATCATTCTTCTCTTCAGCTATACGATAATAATGATACCATTCTTTCTTCTGCTTCTTCTGCAGAGCACTAGTTTCTCTGTACATGCCATTTTAGACCCAATTGATTTCTTAGCTTTACAAGCGATTCGAAAAGGCTTGGATGATTTGCCCGGTTCCAACTATTTTGCTTCCTGGGATTTCACTTCGGAGCCCTGTAACTTCGCCGGAGTTTACTGCGATGGAGATAAAGTGATCGCCTTGAATCTCGGTGATCCCAGAGCCGGAGCACCAGGGTTAACTGGAAACTTGGATCCTTCTATTGGAAAACTCTCTGCTCTTGCGGAGTTCACGGTGGTTCCGGGTCGGATAACTGGTCCATTGCCCGAAAGTTTTTCTCAGTTGAAGAAGCTGAGATTTCTAGGAGTTAGCCGGAACTTTCTCTCCGGTGATATTCCGGCGTCATTAGGCCTTCTCCGGGAGCTACAAACTCTTGATCTTAGTTTCAATCAGCTGACCGGGAGCATCCCTTGGGCTATTGGAGCTCTTCCGGCATTGTCCAACATTATACTGTGTCACAACCACTTGTCCG</genome_strand>
        <mrna_strand>TTCTTCTCTCCTAAACCATTAATTTCAGCCATAACCAACAAAGCTTTTGCTTTCTTGTGAAGCATTCCTACTTTTTTGCCTTTGCTGTTGGCAAAAAAGAAATAACCAACTTATATAAGCCTTTCCTATCATTCTTCTCTTCAGCTATACGATAATAATGATACCATTCTTTCTTCTGCTTCTTCTGCAGAGCACTAGTTTCTCTGTACATGCCATTTTAGACCCAATTGATTTCTTAGCTTTACAAGCGATTCGAAAAGGCTTGGATGATTTGCCCGGTTCCAACTATTTTGCTTCCTGGGATTTCACTTCGGAGCCCTGTAACTTCGCCGGAGTTTACTGCGATGGAGATAAAGTGATCGCCTTGAATCTCGGTGATCCCAGAGCCGGAGCACCAGGGTTAACTGGAAACTTGGATCCTTCTATTGGAAAACTCTCTGCTCTTGCGGAGTTCACGGTGGTTCCGGGTCGGATAACTGGTCCATTGCCCGAAAGTTTTTCTCAGTTGAAGAAGCTGAGATTTCTAGGAGTTAGCCGGAACTTTCTCTCCGGTGATATTCCGGCGTCATTAGGCCTTCTCCGGGAGCTACAAACTCTTGATCTTAGTTTCAATCAGCTGACCGGGAGCATCCCTTGGGCTATTGGAGCTCTTCCGGCATTGTCCAACATTATACTGTGTCACAACCACTTGTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745291" ref_strand="+" ref_description="SGN-E745291 [GI|47105787]">
      <seq>ggcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcacggatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcgggtcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttccatctgctactgttgctggcgaaatttctggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatggctagtgcctcttaagcagcatcgcagacatcaggtaccagtgatgacattctcttgagtcgttacatgtgttgcagtgcagaaatcctcttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaatataattggttgaagttaaattcttcatatgttatggatgtgagggtatgaagatgtttattgcgcatgtcttttattgtatcgtcgtatcataaatttataattctaatgaaaagttgcagtgttttgacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23624" stop="19155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23325" g_stop="22306" g_length="1020"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1020" r_length="1020" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19977" g_stop="19435" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1021" r_stop="1563" r_length="543" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E745291" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23325" e_stop="22306"/>
          <exon e_start="19977" e_stop="19435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTGAGGGTATGAAGATGTTTATTGCGCATGTCTTTTATTGTATCGTCGTATCATAAATTTATAATTCTAATGAGAAGTTGCAGTGTTTTGAAGCTCGATTTAACAAAATAT</genome_strand>
        <mrna_strand>GGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACGGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGGTCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTGAGGGTATGAAGATGTTTATTGCGCATGTCTTTTATTGTATCGTCGTATCATAAATTTATAATTCTAATGAAAAGTTGCAGTGTTTTGACAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392619" ref_strand="+" ref_description="SGN-E392619 [TUS-35-J4](-)">
      <seq>atgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcggatcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttccatctgctactgttgctggcgaaatttctggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatggctagtgcctcttaagcagcatcgcagacatcaggtaccagtgatgacattctcttgagtcgttacatgtgttgcagtgcagaaatcctcttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaatataattggttgaagttaaattcttcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22820" stop="19256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22520" g_stop="22306" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19977" g_stop="19559" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="634" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="650"/>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E392619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22520" e_stop="22306"/>
          <exon e_start="19977" e_stop="19559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTC</genome_strand>
        <mrna_strand>ATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375726" ref_strand="+" ref_description="SGN-E375726 [TUS-35-I13](-)">
      <seq>ttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttttttttggttgttgtcaagattgcggatcaccagggtccacttttttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtcttttttttgtgaagcgaatttcagatttccatttgctactgttgctggcgaaatttttggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatgggtagtgccttttaagcagcatcgcagacatcaggtaccagtgatgacattttcttgagtcgttacatgtgttgcagtgcagaaatccttttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaatataattggttgaagttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22860" stop="19265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22560" g_stop="22306" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19977" g_stop="19566" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="667" r_length="412" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="689"/>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E375726" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22560" e_stop="22306"/>
          <exon e_start="19977" e_stop="19566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAA</genome_strand>
        <mrna_strand>TTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTTTTTTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTTTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTTTTTTGTGAAGCGAATTTCAGATTTCCATTTGCTACTGTTGCTGGCGAAATTTTTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGGTAGTGCCTTTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTTTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTTTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375730" ref_strand="+" ref_description="SGN-E375730 [TUS-35-I19](-)">
      <seq>ggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttctttttggttgttgtcaagattgcggatcaccagggtccacttttttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtcttttttttgtgaagcgaatttcagatttccatttgctactgttgctggcgaaatttttggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatggctagtgccttttaagcagcatcgcagacatcaggtaccagtgatgacattttcttgagtcgttacatgtgttgcagtgcagaaatccttttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaatataattggttgaagttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22825" stop="19265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22525" g_stop="22306" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19977" g_stop="19566" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="632" r_length="412" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="654"/>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E375730" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22525" e_stop="22306"/>
          <exon e_start="19977" e_stop="19566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAA</genome_strand>
        <mrna_strand>GGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTTTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTTTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTTTTTTGTGAAGCGAATTTCAGATTTCCATTTGCTACTGTTGCTGGCGAAATTTTTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTTTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTTTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTTTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539370" ref_strand="+" ref_description="SGN-E539370 [TUS-59-B14](-)">
      <seq>ctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcggatcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcattaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttccatctgctactgtagctggcgaaatttctggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaaggttacaagctccttatagaatcgatggctagtgcctcttaagcagcatcgcagacatcaggtaccagtgatgacattctcttgagtcgttacatgtgttgcagtgcagaaatcctcttaatgttatatttaccaccaatgagctgtttggatacttttgttaaattatatttggtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22704" stop="19285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22404" g_stop="22306" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19977" g_stop="19585" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="492" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E539370" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22404" e_stop="22306"/>
          <exon e_start="19977" e_stop="19585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAA</genome_strand>
        <mrna_strand>CTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATTAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTAGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353859" ref_strand="+" ref_description="SGN-E353859 [cTOS-10-L12]">
      <seq>aggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcggatcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttccatctgctactgttgctggcgaaatttctggacattaatgcagatgttcctgcattggcagaatgtgtgcttacacagtcagctgtcccagaatgttacaagctccttatagaatcgatggctagtgcctcttaagcagcatcgcagacatcaggtaccagtgatgacattctcttgagtcgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22922" stop="19372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22622" g_stop="22306" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19977" g_stop="19672" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="623" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E353859" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22622" e_stop="22306"/>
          <exon e_start="19977" e_stop="19672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTAC</genome_strand>
        <mrna_strand>AGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAATGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539373" ref_strand="+" ref_description="SGN-E539373 [TUS-59-B14]">
      <seq>tcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacggatgttaaggatgagattgatccaaagctttccaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgcggatcaccagggtccactttcttcatcatttcccattgaaaacaggattattccagtgagcatgaatgcattgaaagatcatttcaatcgaacaaagagtctttcttttgtgaagcgaatctcagatttcatctgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23498" stop="19547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23198" g_stop="22993" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22762" i_length="231">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22761" g_stop="22306" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="662" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19977" g_stop="19847" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="792" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E539373" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23198" e_stop="22993"/>
          <exon e_start="22761" e_stop="22306"/>
          <exon e_start="19977" e_stop="19847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACT</genome_strand>
        <mrna_strand>TCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAG.......................................................................................................................................................................................................................................CCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTT-CATCTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573424" ref_strand="+" ref_description="SGN-E573424 [32733]">
      <seq>ttacaagacaagagaaccctcactgcgagctggtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacggtatcgcctgagggcaaagtggaagtcgattttatttatgagccgccccagcaagggaccgaggaaaatttgttacttttacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataagaaggattacacaatgtcaactgcagaagtcttacaggcagctgagttacattcggagggtgatttgaaggagtgggtgaccgctatagtgaagcttgaggtgaatgaggatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgttagattgttcaaggaagggtggtttgagacagatgttaaggatgagattgatccaaagctttctaagatgaagaaagatgtggtggtaggagtcaaggacacaagagaagttgataacgacttcttcttggttgttgtcaagattgctgatcaccagggtccactttcttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23231" stop="19660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22931" g_stop="22306" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19977" g_stop="19960" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="644" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E573424" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22931" e_stop="22306"/>
          <exon e_start="19977" e_stop="19960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGTGCGTTGGATTTATTGCATAGCTTTTTCTTTGAATCCTTTTTGTGTGCTCCATTAGTTGCTAGATGAATTACATTTGTTTGCTTTCCTTAAATTGCATAAAGTGAGTAACTTTATGATCATACTATGAGGAGAAAAATGAAGGCAGTGAGAAAAAGAACTGAACAGAAGAAATACTACACTATTGGTAAGAATTGGCGGTAGAACATCTAAGTATTGATTAAAAGATGCCTTTTTTAATTGTCTTTGGTTGGAACTGTTGAGAATAGAGAAACCTTACTACGGCATTAAAACACATGCTTAATTTAAGTAGCTGTGTGTTTTATGTAGTTTTAGCGAATCGGGTGTTGGTCAAAGCCCCCAAGTAGACATTTGTGTTGCCATATACTTCATCCTACAATTTGAACCTGTTAGGCGGTGATGATAGAACCTAATACTCTATGGTTTCGTGTGTAGTTTGAGAACATCATAAGAACTAGGCAGATCAGAAGGACGCTGAGTCTCAAGTGACTTAATCACTTTTCTCATCTTTTAGATCATCTAACTCATCCTTTCTGATTCGTAACCTTTTTGAAGATTTTTGGGTAATGTAGTTTGCCCCCCCCCCCCCCCTCAGTAGGTGATTTAGCATGTTTCATCATATATTTTTCTCTGATTTGCTTTCAGCTTGTCATCATTCTGTTAGCTGCATTAGTTAGCCCGGTTGGAGAATTCTGCTTTGTTTTCTTTTTTCCACTGTCTTCGCTTCACATGAAGCATGTTTCTGCAGACATGAACTCATTTATCTATGCTTATTTTTGTAATGTCAAAAGAATATTTCTAGGGATAGGTTTAAGTGTGAAATTAGGGAACTTTACCCTATGGTCATTGGACTGTTCAACGTTTAGGCTTGAGCATGATTGACCTGGAAAATTACCATGGAACAATAGCATTAAATCTTTCCATTGAGGAGTTATTCTTCATTCTTCTTCATTCAGTTTTCATTCACTAATTATATCCCCTCTCGCTTGATGTCAATCATGTGATAAATAAATTGGTTGAGGTATTGATGTCACCCATAGCGTGGGTGATGGAGTACAGTAGTGTGCTAGCTGTTGTTGCTATTGACTGTGGTTCTAAAATCTAACCGGTTGGGATATACTTTCAAGTGAGAGGTCTTCGTAAAATTACTTTAAGTGTCTTGCCATAAGACTTTGGACAGAGATTACAATATGCTTATACTCCATTTAACTTGACATGAACTTAAAGAAAAAGGAAGACATTTGAAATTTGTAGTCTAAATTAAAACTGGATATTTGTGTAGCTATTAATCAATTTGCTAAGGGCAAAGGGGGGGGGGGGGGGGGATTTTAATAAATTATCTTTATTATTATAGAAATATTACATTCCTTTTAGGATGGACTAAAAAGGAAAGTGGTACCACATTAATTGGGACAGAGGGAGTAGTACACTTGCTTTAAGGTGTGGTAGTATGTGCTCAACATGAAACTTGCATATTTTGATGTATTCCAAACTGTAATTCAAAATATTGCAAATTCTTCCTCTGTTTGTTCAGATGGCCTCTTGTTAATGTTGCATCAATTGTGGACTTTAGTGGAGTTTGAGTTTGTTAATGTTGCATCAATCGTTGACTTCAGTGGAGTTTGAGTGTCTGAGTGATCCTCAGTTTCTTTAAGGATATACTGAGAAAAATAGTCACTTTGCTTTTATCACCTGACATAATTGATGAACTGTGATAAGGTTTAGTTAGTGAGAGAAAGAATATGCAACCTAATTTGAATCAAATCATTTAAGAATCATGTAATAGCAGTCTCTGCACTTGGACCAACCTCAAATCAATCACTGTGCTGGGTGATGTTCCTTTTGTTTCTGTTTTCTGTCTTGAATCCAAAATAATTTTGAAAGAGTTTTCTAGCATGTGACATCCAATGTCGACTAGATTTGGAATAGGGCAGCTTTACCAGTTTTCAAAGTCCAGGACTTGGTGGAAGTTTTCAGTTTTGATATATATATATTAATGTAAAACTGGAGCTGGAAGAGATGCATAAAGGCTTAGGAATAGGTTCCTGCCTAGTGGTTTTGGAATAGATCAAACCCTGCAGAATGTCCTTGACAGTTTCATAAAGATACCTGTTATTTTATCATTTTTCTTTTCCTTTCCTTTTTGATATAAATTTGGCACATATGTGCGTTGTATCAATTAGAAATTGTTGGATGGATGCTAAGAGGTTCCTTCAACCCCTTTCTCCCTGTCTTGTGTCCTTTGCTTTCATACTGGTGATATTTATTTGAAGCACTTGGTTCTTATTTGGTCTCATCTCATGTGCAGGGTCCACTTTCTTCATCA</genome_strand>
        <mrna_strand>TTACAAGACAAGAGAACCCTCACTGCGAGCTGGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACGGTATCGCCTGAGGGCAAAGTGGAAGTCGATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTACTTTTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAGAAGGATTACACAATGTCAACTGCAGAAGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAGTGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGAGGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTTAGATTGTTCAAGGAAGGGTGGTTTGAGACAGATGTTAAGGATGAGATTGATCCAAAGCTTTCTAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCTGATCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACTTTCTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263248" ref_strand="+" ref_description="SGN-E263248 [cLEG-62-J20]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttgagacngatgttaagggatgagattgatccaaagctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23448" stop="22099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23148" g_stop="22399" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E263248" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23148" e_stop="22399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAA-GGATGAGATTGATCCAAAGCTTTCC</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACNGATGTTAAGGGATGAGATTGATCCAAAGCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375727" ref_strand="+" ref_description="SGN-E375727 [TUS-35-I13]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaggtgaatgacgatggcgctgccgatgtacattttgaggcttttcagatgagtgatatgtgtgtgagattgttcaaggaaggctggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23448" stop="22137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23148" g_stop="22437" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E375727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23148" e_stop="22437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTG</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259788" ref_strand="+" ref_description="SGN-E259788 [cLEG-51-I21]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattanggatgaggaaagtacggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaagcttgaagtgaatgacgatggcgctgccgatgtacattttgaagcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23448" stop="22182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23148" g_stop="22482" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E259788" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23148" e_stop="22482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTC</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTANGGATGAGGAAAGTACGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAAGTGAATGACGATGGCGCTGCCGATGTACATTTTGAAGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553577" ref_strand="+" ref_description="SGN-E553577 [cTSC-1-I6]">
      <seq>ccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtgaaacttgaggtgaatgacgatggcgctgccgatgtacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23647" stop="22194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23347" g_stop="22494" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E553577" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23347" e_stop="22494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATT</genome_strand>
        <mrna_strand>CCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAACTTGAGGTGAATGACGATGGCGCTGCCGATGTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284336" ref_strand="-" ref_description="SGN-E284336 [cLER-16-A9]">
      <seq>catcggcagcgccatcgtcattcacctcaagcttcactatagcggtcacccattccttcaaatcaccctccgaatgtaactcagctgcctgtaagacctctgcagttgacatagtgtaatcctttttatcctgactaattgtctgagtaaatataaaccctactttcctcatccctaatccaatagctatagcatccaccaatttctcctcatcaggatcgcgtagaagcaacaaattttcctcggtcccttgctggggcggctgtacggtgggaccgggaattgtgcgctcaccctggtaagcaagataaaggatagacccgtgagtaagattgaaagaggagatgggtgtatgagggttgtccatatcagtgaagcgagaccaatcatctggggttttagcgagcaaaaggttctgattggaagatagggtttgcgattgaactggaactcgaagttgggattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22200" stop="23497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22500" g_stop="22760" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22761" i_stop="22991" i_length="231">
            <donor d_prob="0.330" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22992" g_stop="23197" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="467" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E284336" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284336" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22500" e_stop="22760"/>
          <exon e_start="22992" e_stop="23197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGCAGCGCCATCGTCATTCACCTCAAGCTTCACTATAGCGGTCACCCATTCCTTCAAATCACCCTCCGAATGTAACTCAGCTGCCTGTAAGACCTCTGCAGTTGACATAGTGTAATCCTTTTTATCCTGACTAATTGTCTGAGTAAATATAAACCCTACTTTCCTCATCCCTAATCCAATAGCTATAGCATCCACCAATTTCTCCTCATCAGGATCGCGTAGAAGCAACAAATTTTCCTCGGTCCCTTGCTGGGGCGGCTCATAAATAAAATGGACTTCCACTTTGCCTTCAGGGGATACTGTACCATACATAAAACCACCCCTTTTGACAGCAAAGGCGAGTGTTTCATTGACATAATGTTGAAAGGCATTGGCGGCATCACGATCGAAGGAAACGAGTTCGCAGTGAGGGTTCTCTTGTCTAGTAACTCGCATTTGTTTAGCAATTAGGTCGTCCATGGTCATCTTTCTACCGAATGAACCGGCGGGCTGTACGGTGGGACCGGGAATTGTGCGCTCACCCTGGTAAGCAAGATAAAGGATAGAACCGTGAGTAAGATTGAAAGAGGAGATGGGTGTATGAGGGTTGTCCATATCAGTGAAGCGAGACCAATCATCTGGGGTTTTAGCGAGCAAAAGGTTCTGATTGGAAGATAGGGTTTGCGATTGAACTGGAACTCGAAGTTGGGATTCG</genome_strand>
        <mrna_strand>CATCGGCAGCGCCATCGTCATTCACCTCAAGCTTCACTATAGCGGTCACCCATTCCTTCAAATCACCCTCCGAATGTAACTCAGCTGCCTGTAAGACCTCTGCAGTTGACATAGTGTAATCCTTTTTATCCTGACTAATTGTCTGAGTAAATATAAACCCTACTTTCCTCATCCCTAATCCAATAGCTATAGCATCCACCAATTTCTCCTCATCAGGATCGCGTAGAAGCAACAAATTTTCCTCGGTCCCTTGCTGGGGCG.......................................................................................................................................................................................................................................GCTGTACGGTGGGACCGGGAATTGTGCGCTCACCCTGGTAAGCAAGATAAAGGATAGACCCGTGAGTAAGATTGAAAGAGGAGATGGGTGTATGAGGGTTGTCCATATCAGTGAAGCGAGACCAATCATCTGGGGTTTTAGCGAGCAAAAGGTTCTGATTGGAAGATAGGGTTTGCGATTGAACTGGAACTCGAAGTTGGGATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255597" ref_strand="+" ref_description="SGN-E255597 [cLEG-36-I22]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccgtcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattcggagggtgatttgaaggaatgggtgaccgctatagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23448" stop="22233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23148" g_stop="22533" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E255597" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23148" e_stop="22533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGA</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCGTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312788" ref_strand="+" ref_description="SGN-E312788 [cTOA-8-H22]">
      <seq>caattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtagggtttatatttactcagacaattagtcaggataaaaaggattacactatgtcaactgcagaggtcttacaggcagctgagttacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23315" stop="22271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23015" g_stop="22571" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E312788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23015" e_stop="22571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTC</genome_strand>
        <mrna_strand>CAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699939" ref_strand="+" ref_description="SGN-E699939 [FA11CF05]">
      <seq>ctttcttcttcgacggtcctccccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgaggagaaattggtggatgctatagctattggattagggatgaggaaagtaaggtttatatttactcagacaattagtcaggataaaaaggattacactatgtccactgcagaggtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23669" stop="22291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23369" g_stop="22591" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E699939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23369" e_stop="22591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCTTCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTA</genome_strand>
        <mrna_strand>CTTTCTTCTTCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAAGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCCACTGCAGAGGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315705" ref_strand="+" ref_description="SGN-E315705 [cTOA-26-G9]">
      <seq>caacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccganggaaatttgttgcttctacgcgatcctgatgaggagaaatggtggatgctatagctattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23646" stop="22378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23346" g_stop="22678" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E315705" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23346" e_stop="22678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGA</genome_strand>
        <mrna_strand>CAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGANGGAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAA-TGGTGGATGCTATAGCTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392369" ref_strand="+" ref_description="SGN-E392369 [TUS-35-J4]">
      <seq>aacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctgaaggcaaagtggaagtccattttatttatgagccgccccagcaagggaccgaggaaaatttgttgcttctacgcgatcctgatgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23618" stop="22406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23318" g_stop="22706" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E392369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23318" e_stop="22706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGA</genome_strand>
        <mrna_strand>AACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315807" ref_strand="+" ref_description="SGN-E315807 [cTOA-26-F24]">
      <seq>caacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgntcaaaggggtggttntatgtatggtacagtatcccctggaagcaaagtggaagtccattttatttatgagccgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23646" stop="22456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23346" g_stop="22756" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E315807" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23346" e_stop="22756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCC</genome_strand>
        <mrna_strand>CAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGNTCAAAGGGGTGGTTNTATGTATGGTACAGTATCCCCTGGAAGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201107" ref_strand="+" ref_description="SGN-E201107 [cLEC-10-E4]">
      <seq>acatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgtatggtacagtatcccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23617" stop="22494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23317" g_stop="22794" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E201107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23317" e_stop="22794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTG</genome_strand>
        <mrna_strand>ACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272501" ref_strand="+" ref_description="SGN-E272501 [cLEM-19-P14]">
      <seq>cccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtggttttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23648" stop="22511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23348" g_stop="22811" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E272501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23348" e_stop="22811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTA</genome_strand>
        <mrna_strand>CCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446117" ref_strand="+" ref_description="SGN-E446117 [cSTA-20-C21]">
      <seq>gttcaatctcaaaccctatctgcaaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggccaaccctcatacacccatctcctctttgaaccttactcacggttccatgctttatctcgcttacgagggtgaacgcaccattgccggtccggccgtccagcccgccggttcattcggtagaaagatgaccatggacgacctaattgccaaacaaatgcgagttacaagacaagagaaccctcactgcgagctggtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgctgtcaaaaggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23475" stop="22521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23175" g_stop="22821" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E446117" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23175" e_stop="22821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTG</genome_strand>
        <mrna_strand>GTTCAATCTCAAACCCTATCTGCAAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGCCAACCCTCATACACCCATCTCCTCTTTGAACCTTACTCACGGTTCCATGCTTTATCTCGCTTACGAGGGTGAACGCACCATTGCCGGTCCGGCCGTCCAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCCAAACAAATGCGAGTTACAAGACAAGAGAACCCTCACTGCGAGCTGGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253538" ref_strand="+" ref_description="SGN-E253538 [cLEG-24-O22]">
      <seq>gcgacggtcctccccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatgccgccaatgcctttcaacattatgtcaatgaaacactcgcctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23659" stop="22534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23360" g_stop="22834" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E253538" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23360" e_stop="22834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCT</genome_strand>
        <mrna_strand>GCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375731" ref_strand="+" ref_description="SGN-E375731 [TUS-35-I19]">
      <seq>cagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcactgcgaactcgtttccttcgatcgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23448" stop="22581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23148" g_stop="22881" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E375731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23148" e_stop="22881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATG</genome_strand>
        <mrna_strand>CAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335646" ref_strand="+" ref_description="SGN-E335646 [cTOE-8-F13]">
      <seq>tcctccccaacttccatacagattcacctgcactaaacatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcnccgcggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23653" stop="22608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23353" g_stop="22908" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E335646" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23353" e_stop="22908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACT</genome_strand>
        <mrna_strand>TCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCNCCGCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206388" ref_strand="+" ref_description="SGN-E206388 [cLEC-23-D16]">
      <seq>acatatcaatcaccataggaatacaaccaagatgatgatcagaatcagaagcagagatgggttagagcgagtcacaattgacaacccacatgccacaattgcccaactcaagtcccaaatcgaatcccaacttcgagttccagttcaatcgcaaaccctatcttccaatcagaaccttttgctcgctaaaaccccagatgattggtctcgcttcactgatatggacaaccctcatacacccatctcctctttcaatcttactcacggttctatcctttatcttgcttaccagggtgagcgcacaattcccggtcccaccgtacagcccgccggttcattcggtagaaagatgaccatggacgacctaattgctaaacaaatgcgagttactagacaagagaaccctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23617" stop="22608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23317" g_stop="22908" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E206388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23317" e_stop="22908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACT</genome_strand>
        <mrna_strand>ACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482506" ref_strand="+" ref_description="SGN-E482506 [cSTD-22-M22]">
      <seq>tgcctcctttgaccagcattaaacaggtttataaactccaatatgtcaacccagatactagagtttttggtgtaatctcaaatcctgttggccatagcaagggcccccttctgcacaaccctgcctttaggcatacaggatacaatggaatatatgtcccactactagttgacaatgtcaaggaattttttcgcgttttctcatgtaatgactatgctggtttcagtgttggtatcccacataaggaagcagcagtacgctgctgtgatgaagttgatccacttgctaagtctataggagctgtaaacacaattataaggaggccttctgacggcaagctcattggttataatacaaattgtgaggcttgtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32526" stop="30822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32226" g_stop="32001" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32000" i_stop="31933" i_length="68">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31932" g_stop="31869" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="290" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31868" i_stop="31207" i_length="662">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31206" g_stop="31122" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="375" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E482506" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32226" e_stop="32001"/>
          <exon e_start="31932" e_stop="31869"/>
          <exon e_start="31206" e_stop="31122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTCTACACAACCCCGCCTTTAGGCATACAGGATACAATGGAATATATGTCCCACTACTAGTTGACAATGTCAAGGAATTCTTTCGGGTTTTCTCATGCAATGACTATGCTGGTTTCAGGTAATTAAGCTAATCTTTGTTTTTTCATGCTTATTTCCTTTTGATACAAACGTGCCTGCCTATTGTAGTGTTGGTATCCCACATAAGGAAGCAGCAGTACGGTGTTGTGATGAAGTTGATCCACTTGCTAAGGTTTGATTAACATACATAAACTATGCTTTCTATAATTTGCTTTTCCTGTTTAAAATATCAACATGTTCAATTTTCATAACTCAGCAGCTCAATGTGGTTTATATAGCATACAGGGTGTATGCAAATCGGTGTGTTGTGTGACTTACCTTCAGGTTTTGGGAGTTGAAGAATCCATAAAAGCACAAACTTTTTGGGATGTCTTTGCTGAAGCTAGTTCAGCATTAATACTTCTTATATAATGACAACTTAATTTGTTTATATATGTGTACAGAGGCCGCCTGCATATAAACATAGGAAGCAGAAAGTACTACCTTTGAATCACCCTAGAATATTAAGCAGAATATTATCAGTTTTATTTTCATAAATCGACGAATGAATAACTAGCCTTGAAGCCTAAGTAGAGATATTACCCTGGTTGGCCATCAACTTATGAAAAGAAAAAAAAAAAGGAAAGAAGTTGTGTTTCTCATATATTCTCACATGGACTAGAATGCTATTGTCCTTGCATGGAAGCAGAATTTGTTATATAGATTAGCTCTGTATCTTGAAAGTTCAGATGCCATTTCTGTACAATACTTCTTTCTGTGTAACCATTCCAGAATATTTTGTGGCTAAATTATCTTATTTTTAAACTTTCTAACTGTATCATGCTTCGGAATCAGTCTATAGGAGCTGTAAACACAATTATAAGGAGGCCTTCTGACGGCAAGCTCATTGGTTATAATACAGATTGTGAGGCTTGTGTGA</genome_strand>
        <mrna_strand>TGCCTCCTTTGACCAGCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAGTTTTTGGTGTAATCTCAAATCCTGTTGGCCATAGCAAGGGCCCCCTTCTGCACAACCCTGCCTTTAGGCATACAGGATACAATGGAATATATGTCCCACTACTAGTTGACAATGTCAAGGAATTTTTTCGCGTTTTCTCATGTAATGACTATGCTGGTTTCAG....................................................................TGTTGGTATCCCACATAAGGAAGCAGCAGTACGCTGCTGTGATGAAGTTGATCCACTTGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATAGGAGCTGTAAACACAATTATAAGGAGGCCTTCTGACGGCAAGCTCATTGGTTATAATACAAATTGTGAGGCTTGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453478" ref_strand="+" ref_description="SGN-E453478 [cSTS-20-K7]">
      <seq>aagctgtgaggaaatggcagcttctatgcacaaagctaaagaagaaggagcagatctggtggagctttgcattgatgacttcattttctctcacatttcacaacttgaactactactcaaacaaagaagtttaccatccatcgtttctttcaggccaaaatctgcgataaattctgactggaagaaaacatgtatccaagttctcaaattagctgttgaattggacgttgagttcgtcgaagtcgacactgaggttgtttcccatcaagtggttgctgaattgatgagcagccgatcaaatagcaagataattgcttctacttatgtcattaatgctggaaaccctcctactaaagacacactttgtaattccatcataaacctgcagtccacaggagcagatatcatcaaacttgtcattgatgtagattatattacagatgttgcaccagttttccatatgcttacgcattctcaggtccctctaattgctagggcagcaggggaatagaggtcttataagccaactattgggtccaaaatacggtgctttcttttgtttgtggatctttggcangcaaatccacccctggcttgcctcctttgaccagcattaaacaggtttataaactccaatatgtcaacccagatctagagttttttggtgtaatctcaaatcctgttggccatagcaagggcccccttctgcacaaccctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33392" stop="31801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33113" g_stop="32961" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32960" i_stop="32729" i_length="232">
            <donor d_prob="0.374" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32728" g_stop="32629" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="253" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32628" i_stop="32561" i_length="68">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32560" g_stop="32101" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="721" r_length="468" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E453478" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33113" e_stop="32961"/>
          <exon e_start="32728" e_stop="32629"/>
          <exon e_start="32560" e_stop="32101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAGGTAATCCAGAAATGGTGGGTTTAATTTTGATTAGCTAAGATTTTGTGAGGAGGAGATGGAGTGAGTCCCTTTTTTTGTTTGATTTCAAGGCACGTGAAACCCACACTACTCGTGGAGAGAGAGAGAAAAAAAAAAGTATTTATTATTACTCTCATCTACTTGTCATTACTACTCTTAACTAATTATATTATATCCATCTCGCATGCATTTATTGGCTGTTCTAATATGTCAGGCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAGGTCATTTCACTTCCATCCATTTAAACCTAACCGAAAATCAAAATTAAATTAAATTTTTGTTTTTTTAGGTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTC---AATGGTGGAAA--C-CCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGG-ATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTC-TTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGA-ATTTTTGGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTCTACACAACCCCGCCT</genome_strand>
        <mrna_strand>AAGCTGTGAGGAAATGGCAGCTTCTATGCACAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGATGACTTCATTTTCTCTCACATTTCACAACTTGAACTACTACTCAAACAAAGAAGTTTACCATCCATCGTTTCTTTCAG........................................................................................................................................................................................................................................GCCAAAATCTGCGATAAATTCTGACTGGAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTTGAATTGGACGTTGAGTTCGTCGAAGTCGACACTGAG....................................................................GTTGTTTCCCATCAAGTGGTTGCTGAATTGATGAGCAGCCGATCAAATAGCAAGATAATTGCTTCTACTTATGTCATTAATGCTGGAAACCCTCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGATTATATTACAGATGTTGCACCAGTTTTCCATATGCTTACGCATTCTCAGGTCCCTCTAATTGCTAGGGCAGCAGGGGAATAGAGGTCTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTTGTTTGTGGATCTTTGGCANGCAAATCCACCCCTGGCTTGCCTCCTTTGACCAGCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGAT-CTAGAGTTTTTTGGTGTAATCTCAAATCCTGTTGGCCATAGCAAGGGCCCCCTTCTGCACAACCCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329052" ref_strand="+" ref_description="SGN-E329052 [cTOC-24-M20]">
      <seq>acttggtggtgtacacaagattagaatgtgagagctgtgaggaaatgacttgttgtatagagaaagctaaagaagaaggagcagatctggtggagctttgcattgacgacttcactttctctgacatttcacaacttgaagaactactcaagcaaagaagtttaccatccatagtttctttcaggccaaaatctccgataaattctgagggcaagaaaacatgtatccaagttctcaaattagctgtggaattggacgttgagttcgtcgaagtcgacactcaggttgtctgccatcaagtggttgctgaattgatgaagagccgatcaaatagcaaaataattgcttctacttatgtcaatggtggaaaccctactaaagacacactttgtaattccatcataaacctgcagtccacaggagcagatatcatcaaacttgtcattgatgtagcttatattacagacgttgcaccagttttccatatgcttacacattctcaggtccctctaattgttagggcagcaggggatagaggacttataagccaactattgggtccaaaatacggtgctttctttgtttgtggatctttgggaggcaaatacacccctggcttgccatctttgaccaccattaaacaggtttataaactccaatatgtcaacccagatactagaattttttgtgttatctcaaatcctgttggccatagcaagggaccccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33444" stop="31816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33144" g_stop="32961" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32960" i_stop="32729" i_length="232">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32728" g_stop="32629" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="284" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32628" i_stop="32561" i_length="68">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32560" g_stop="32116" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="729" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E329052" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33144" e_stop="32961"/>
          <exon e_start="32728" e_stop="32629"/>
          <exon e_start="32560" e_stop="32116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAGGTAATCCAGAAATGGTGGGTTTAATTTTGATTAGCTAAGATTTTGTGAGGAGGAGATGGAGTGAGTCCCTTTTTTTGTTTGATTTCAAGGCACGTGAAACCCACACTACTCGTGGAGAGAGAGAGAAAAAAAAAAGTATTTATTATTACTCTCATCTACTTGTCATTACTACTCTTAACTAATTATATTATATCCATCTCGCATGCATTTATTGGCTGTTCTAATATGTCAGGCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAGGTCATTTCACTTCCATCCATTTAAACCTAACCGAAAATCAAAATTAAATTAAATTTTTGTTTTTTTAGGTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTC</genome_strand>
        <mrna_strand>ACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAG........................................................................................................................................................................................................................................GCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAG....................................................................GTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTTGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316344" ref_strand="+" ref_description="SGN-E316344 [cTOA-25-A20]">
      <seq>agagatattattatgggtttgaagaatgacttggtggtgtacacaagattagaatgtgagagctgtgaggaaatgacttgttgtatagagaaagctaaagaagaaggagcagatctggtggagctttgcattgacgacttcactttctctgacatttcacaacttgaagaactactcaagcaaagaagtttaccatccatagtttctttcaggccaaaatctccgataaattctgagggcaagaaaacatgtatccaagttctcaaattagctgtggaattggacgttgagttcgtcgaagtcgacactcaggttgtctgccatcaagtggttgctgaattgatgaagagccgatcaaatagcaaaataattgcttctacttatgtcaatggtggaaaccctactaaagacacactttgtaattccatcataaacctgcagtccacaggagcagatatcatcaaacttgtcattgatgtagcttatattacagacgttgcaccagttttccatatgcttacacattctcaggtccctctaattgttagggcagcaggggatagaggacttataagccaactattgggtccaaaatacggtgctttctttgtttgtggatctttgggaggcaaatacacccctggcttgccatctttgaccaccattaaacaggtttataaactccaatatgtcaacccagatactagaatttttggtgttatctcaaatcctggtggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33472" stop="31832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33172" g_stop="32961" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32960" i_stop="32729" i_length="232">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32728" g_stop="32629" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="312" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32628" i_stop="32561" i_length="68">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32560" g_stop="32132" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="741" r_length="429" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E316344" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33172" e_stop="32961"/>
          <exon e_start="32728" e_stop="32629"/>
          <exon e_start="32560" e_stop="32132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATATTATTATGGGTTTGAAGAATGACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAGGTAATCCAGAAATGGTGGGTTTAATTTTGATTAGCTAAGATTTTGTGAGGAGGAGATGGAGTGAGTCCCTTTTTTTGTTTGATTTCAAGGCACGTGAAACCCACACTACTCGTGGAGAGAGAGAGAAAAAAAAAAGTATTTATTATTACTCTCATCTACTTGTCATTACTACTCTTAACTAATTATATTATATCCATCTCGCATGCATTTATTGGCTGTTCTAATATGTCAGGCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAGGTCATTTCACTTCCATCCATTTAAACCTAACCGAAAATCAAAATTAAATTAAATTTTTGTTTTTTTAGGTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGTTGGCCAT</genome_strand>
        <mrna_strand>AGAGATATTATTATGGGTTTGAAGAATGACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAG........................................................................................................................................................................................................................................GCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAG....................................................................GTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGGTGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399707" ref_strand="+" ref_description="SGN-E399707 [cSTC-2-K15]">
      <seq>gaagaaggagcagatctggtggagctttgcattgatgacttcattttctctcacatttcacaacttgaactactactcaaacaaagaagtttaccatccatcgtttctttcaggccaaaatctgcgataaattctgactggaagaaaacatgtatccaagttctcaaattagctgttgaattggacgttgagttcgtcgaagtcgacactgaggttgtttcccatcaagtggttgctgaattgatgagcagccgatcaaatagcaagataattgcttctacttatgtcattaatgctggaaaccctcctactaaagacacactttgtaattccatcataaacctgcagtccacaggagcagatatcatcaaacttgtcattgatgtagattatattacagatgttgcaccagttttccatatgcttacgcattctcaggtccctctaattgctagggcagcaggggatagaggtcttataagccaactattgggtccaaaatacggtgctttctttgtttgtggatctttggcaggcaaatccacccctggcttgcctcctttgaccagcattaaacaggtttataaactccaatatgtcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33373" stop="31877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33073" g_stop="32961" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32960" i_stop="32729" i_length="232">
            <donor d_prob="0.374" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32728" g_stop="32629" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="213" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32628" i_stop="32561" i_length="68">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32560" g_stop="32177" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="603" r_length="390" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E399707" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33073" e_stop="32961"/>
          <exon e_start="32728" e_stop="32629"/>
          <exon e_start="32560" e_stop="32177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAGGTAATCCAGAAATGGTGGGTTTAATTTTGATTAGCTAAGATTTTGTGAGGAGGAGATGGAGTGAGTCCCTTTTTTTGTTTGATTTCAAGGCACGTGAAACCCACACTACTCGTGGAGAGAGAGAGAAAAAAAAAAGTATTTATTATTACTCTCATCTACTTGTCATTACTACTCTTAACTAATTATATTATATCCATCTCGCATGCATTTATTGGCTGTTCTAATATGTCAGGCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAGGTCATTTCACTTCCATCCATTTAAACCTAACCGAAAATCAAAATTAAATTAAATTTTTGTTTTTTTAGGTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTC---AATGGTGGAAA--C-CCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAAC</genome_strand>
        <mrna_strand>GAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGATGACTTCATTTTCTCTCACATTTCACAACTTGAACTACTACTCAAACAAAGAAGTTTACCATCCATCGTTTCTTTCAG........................................................................................................................................................................................................................................GCCAAAATCTGCGATAAATTCTGACTGGAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTTGAATTGGACGTTGAGTTCGTCGAAGTCGACACTGAG....................................................................GTTGTTTCCCATCAAGTGGTTGCTGAATTGATGAGCAGCCGATCAAATAGCAAGATAATTGCTTCTACTTATGTCATTAATGCTGGAAACCCTCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGATTATATTACAGATGTTGCACCAGTTTTCCATATGCTTACGCATTCTCAGGTCCCTCTAATTGCTAGGGCAGCAGGGGATAGAGGTCTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGCAGGCAAATCCACCCCTGGCTTGCCTCCTTTGACCAGCATTAAACAGGTTTATAAACTCCAATATGTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372191" ref_strand="+" ref_description="SGN-E372191 [TUS-30-P2]">
      <seq>gcgtggccactgctcacagtctcaggctgctactgtcttggcctctcacaacttcatgttaatgtccaactccaaccaattacacgtcgtgaaatcgtacacccatctattcatcaatgtatactttctgtcgatagaattagagcaagactcccgcttttaaatgctcaaaccaatggagactacgactctgagcagctaattgaagatcttagggttcctcaacagtggctacaaccttccaaagccttggaggaatctgaatggctgcaaactgctcttaacaagtggttggatgatgaatattgtccagaggaaacaaatattgagattagcagaattgctgcaaattcattctacagatcattactggaaaataaaagtgacataggtgagatactgttaacgatggctggagatttggaatccatatcctatcaagaaagctttcatggagcattctcatcagcaaatgcagcagtgaatctcataatccaacggcttgaacagtactgatcaagattggcctcacccaaaagttttctctgagttgcattgatcagaattatccttttatagtgtagtaagtacattatgattaagagaaacatgcttacaccaataaggttagaaggggcttatattggggggagaagatttgagttttagaacgtgaagcatgaaccaatggtgttatgttaagatatgtgttagtcatctcaaaatcaagttatttttatgagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40780" stop="37835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40480" g_stop="40226" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40225" i_stop="38626" i_length="1600">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38625" g_stop="38136" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="744" r_length="489" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="745" polyA_stop="762"/>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E372191" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40480" e_stop="40226"/>
          <exon e_start="38625" e_stop="38136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGGCCACTGCTCACAGTCTCAGGCTGCTACTGTCTTGGCCTCTCACAACTTCATGTTAATGTCCAACTCCAACCAATTACACGTCGTGAAATCGTACACCCATCTATTCATCAATGTATACTTTCTGTCGATAGAATTAGAGCAAGACTCCCGCTTTTAAATGCTCAAACCAATGGAGACTACGACTCTGAGCAGCTAATTGAAGATCTTAGGGTTCCTCAACAGTGGCTACAACCTTCCAAAGCCTTGGAGGTAACACCTGCTCGTTTCTCAATCCGAAATTTTATTCTACCAAATCCCCATTTAATGCTCATCTTTGTAATTATTTACTCAACTTCTTTTAACAAATATACAAGGTCCGATGAAGCCAACACATAAGCTTATGGATCCAACCTCTGTTAATTAGCACTACTTACTTGGTTCTGTAGCAAGAATTTGATGCTCACTGACTTGTGGAAACCTTATCCTTGCAATTTAAAACTAAGAGATTCTACTTTGTGTATTACCCATTAAAATGCAATTATATATCTTAAGTTACCTTCTGTTGTTATTGTTAAGAGGATCTGGCTTTTAGCAACCATATATGCATGCCGGCGTAGTTTTCTTGGTAGTCCTCTACGTGGTCACTCAAATCCTGAATTGCTTGGTATATTATAGACCAAAATGTTTGGGGCGTAGTGTTATCCCAAAAAAATGTAGGCTTATCACGCCCCCAAGGCTAGATGCAAAACGCTGCTTAATGTCACAAGTGACCCCAAGCTAACACATGTCATGGCATATCAATACAAGTTCAATTAAAGCATGCACTATGCGGAAGCTAAAAATAGTTTAATATCTGAAATGGTGAAAAAGCCCAAAATATCTGAATATATATAAAATATATGAAAAGTATAGTGATGACGGAAAACAACACTAACAACTCAAGCTGAATCTAATCTATGTCTCAAAGCCTTTAGCTGATCTGAGTTGCAAAGACATGCCCCCAGCTAACTCTGAAAATTCTGAAACTGAAAAATAAATACAAAAGTAAAAGCACTTCTCTCGTCCTCGAACCATGAGGACTCACCGCTGAAGCTGCTAAGTACAGACTGGAAATCGAGCTAAGCGTGGTCTGGATGTTGAGCGTCTGAATCTACATAATATAACGATGTAGCACAAAAGTATGTGTCAGTACTTTGATTGCTTTTGATGCTCGCTCAGTTATCTTTATCCATTACACGAGGGTGAATTGTCATTTTAGATCTTTTGTACATATGTGGCATGGTTGTTGGGTTTATCCTGGGAACATTAGCAAGAGGAGTAGGGCTTCCTTCACATGCTATAAGGTGTCCTTAAATTGAGCTGTTTTTCTTTCCTAATAATGATCTGGCAAGTTTTATTTAGGGTGGAAATCTATTTACTGAATACCTTTAAGATGCCATTTCAGTTACCTTTAGTGTTGAACCTAAGTTGTGGATATTGTGTTATACTATATAGCTTGGCGTGATGGAATTTCATCTTAGAATGCTTGCTAATGTTGTGATGTTGCAAAATCTTGGTATAGCTGGCTGTGATATGTTCCTTTCTACTCCCATTGAAGCAAAAGGGATATAATTCATATCCTCTCTTATTGTATTGTGTTCAGGATCCTTCTTCTGCGTCTGCACATGTTTTGAAATTCATAATCCTAGATAAGAGTTCAACCTTTTTACGCCTTTCTCTTGCTTACTATTTTTGGCTCCCTCTTCCTTATCAGTTTTAGAATAACAATGCAGAGATTTCTGATTGATCTGGTTAAATATGCAGTGAGTAAAGCACAATTAGCATATTGTCTATTGAAATTCATGGCTCAAGAACTTGTAGCATTTAACAGGAATCTGAATGGCTGCAAACTGCTCTTAACAAGTGGTTGGATGATGAATATTGTCCAGAGGAAACAAATATTGAGATTAGCAGAATTGCTGCAAATTCATTCTACAGATCATTACTGGAAAATAAAAGTGACATAGGTGAGATACTGTTAACGATGGCTGGAGATTTGGAATCCATATCCTATCAAGAAAGCTTTCATGGAGCATTCTCATCAGCAAATGCAGCAGTGAATCTCATAATCCAACGGCTTGAACAGTACTGATCAAGATTGGCCTCACCCAAAAGTTTTCTCTGAGTTGCATTGATCAGAATTATCCTTTTATAGTGTAGTAAGTACATTATGATTAAGAGAAACATGCTTACACCAATAAGGTTAGAAGGGGCTTATATTGGGGGGAGAAGATTTGAGTTTTAGAACGTGAAGCATGAACCAATGGTGTTATGTTAAGATATGTGTCAGTCATCTCAAAATCAAGTTATATTTTATGAGT</genome_strand>
        <mrna_strand>GCGTGGCCACTGCTCACAGTCTCAGGCTGCTACTGTCTTGGCCTCTCACAACTTCATGTTAATGTCCAACTCCAACCAATTACACGTCGTGAAATCGTACACCCATCTATTCATCAATGTATACTTTCTGTCGATAGAATTAGAGCAAGACTCCCGCTTTTAAATGCTCAAACCAATGGAGACTACGACTCTGAGCAGCTAATTGAAGATCTTAGGGTTCCTCAACAGTGGCTACAACCTTCCAAAGCCTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAATGGCTGCAAACTGCTCTTAACAAGTGGTTGGATGATGAATATTGTCCAGAGGAAACAAATATTGAGATTAGCAGAATTGCTGCAAATTCATTCTACAGATCATTACTGGAAAATAAAAGTGACATAGGTGAGATACTGTTAACGATGGCTGGAGATTTGGAATCCATATCCTATCAAGAAAGCTTTCATGGAGCATTCTCATCAGCAAATGCAGCAGTGAATCTCATAATCCAACGGCTTGAACAGTACTGATCAAGATTGGCCTCACCCAAAAGTTTTCTCTGAGTTGCATTGATCAGAATTATCCTTTTATAGTGTAGTAAGTACATTATGATTAAGAGAAACATGCTTACACCAATAAGGTTAGAAGGGGCTTATATTGGGGGGAGAAGATTTGAGTTTTAGAACGTGAAGCATGAACCAATGGTGTTATGTTAAGATATGTGTTAGTCATCTCAAAATCAAGTTAT-TTTTATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372190" ref_strand="+" ref_description="SGN-E372190 [TUS-30-P2](-)">
      <seq>tggcctctcacaacttcatgttaatgtccaactccaaccaattacacgtcgtgaaatcgtacacccatctattcatcaatgtatactttctgtcgatagaattagagcaagactcccgcttttaaatgctcaaaccaatggagactacgactctgagcagctaattgaagatcttagggttcctcaacagtggctacaaccttccaaagccttggaggaatctgaatggctgcaaactgctcttaacaagtggttggatgatgaatattgtccagaggaaacaaatattgagattagcagaattgctgcaaattcattctacagatcattactggaaaataaaagtgacataggtgagatactgttaacgatggctggagatttggaatccatatcctatcaagaaagctttcatggagcattctcatcagcaaatgcagcagtgaatctcataatccaacggcttgaacagtactgatcaagattggcctcacccaaaagttttctctgagttgcattgatcagaattatccttttatagtgtagtaagtacattatgattaagagaaacatgcttacaccaataaggttagaaggggcttatattggggggagaagatttgagttttagaacgtgaagcatgaaccaatggtgttatgttaagatatgtgtcagtcatctcaaaatcaaagttatattttatgagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40742" stop="37835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40442" g_stop="40226" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40225" i_stop="38626" i_length="1600">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38625" g_stop="38136" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="708" r_length="491" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E372190" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40442" e_stop="40226"/>
          <exon e_start="38625" e_stop="38136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTCTCACAACTTCATGTTAATGTCCAACTCCAACCAATTACACGTCGTGAAATCGTACACCCATCTATTCATCAATGTATACTTTCTGTCGATAGAATTAGAGCAAGACTCCCGCTTTTAAATGCTCAAACCAATGGAGACTACGACTCTGAGCAGCTAATTGAAGATCTTAGGGTTCCTCAACAGTGGCTACAACCTTCCAAAGCCTTGGAGGTAACACCTGCTCGTTTCTCAATCCGAAATTTTATTCTACCAAATCCCCATTTAATGCTCATCTTTGTAATTATTTACTCAACTTCTTTTAACAAATATACAAGGTCCGATGAAGCCAACACATAAGCTTATGGATCCAACCTCTGTTAATTAGCACTACTTACTTGGTTCTGTAGCAAGAATTTGATGCTCACTGACTTGTGGAAACCTTATCCTTGCAATTTAAAACTAAGAGATTCTACTTTGTGTATTACCCATTAAAATGCAATTATATATCTTAAGTTACCTTCTGTTGTTATTGTTAAGAGGATCTGGCTTTTAGCAACCATATATGCATGCCGGCGTAGTTTTCTTGGTAGTCCTCTACGTGGTCACTCAAATCCTGAATTGCTTGGTATATTATAGACCAAAATGTTTGGGGCGTAGTGTTATCCCAAAAAAATGTAGGCTTATCACGCCCCCAAGGCTAGATGCAAAACGCTGCTTAATGTCACAAGTGACCCCAAGCTAACACATGTCATGGCATATCAATACAAGTTCAATTAAAGCATGCACTATGCGGAAGCTAAAAATAGTTTAATATCTGAAATGGTGAAAAAGCCCAAAATATCTGAATATATATAAAATATATGAAAAGTATAGTGATGACGGAAAACAACACTAACAACTCAAGCTGAATCTAATCTATGTCTCAAAGCCTTTAGCTGATCTGAGTTGCAAAGACATGCCCCCAGCTAACTCTGAAAATTCTGAAACTGAAAAATAAATACAAAAGTAAAAGCACTTCTCTCGTCCTCGAACCATGAGGACTCACCGCTGAAGCTGCTAAGTACAGACTGGAAATCGAGCTAAGCGTGGTCTGGATGTTGAGCGTCTGAATCTACATAATATAACGATGTAGCACAAAAGTATGTGTCAGTACTTTGATTGCTTTTGATGCTCGCTCAGTTATCTTTATCCATTACACGAGGGTGAATTGTCATTTTAGATCTTTTGTACATATGTGGCATGGTTGTTGGGTTTATCCTGGGAACATTAGCAAGAGGAGTAGGGCTTCCTTCACATGCTATAAGGTGTCCTTAAATTGAGCTGTTTTTCTTTCCTAATAATGATCTGGCAAGTTTTATTTAGGGTGGAAATCTATTTACTGAATACCTTTAAGATGCCATTTCAGTTACCTTTAGTGTTGAACCTAAGTTGTGGATATTGTGTTATACTATATAGCTTGGCGTGATGGAATTTCATCTTAGAATGCTTGCTAATGTTGTGATGTTGCAAAATCTTGGTATAGCTGGCTGTGATATGTTCCTTTCTACTCCCATTGAAGCAAAAGGGATATAATTCATATCCTCTCTTATTGTATTGTGTTCAGGATCCTTCTTCTGCGTCTGCACATGTTTTGAAATTCATAATCCTAGATAAGAGTTCAACCTTTTTACGCCTTTCTCTTGCTTACTATTTTTGGCTCCCTCTTCCTTATCAGTTTTAGAATAACAATGCAGAGATTTCTGATTGATCTGGTTAAATATGCAGTGAGTAAAGCACAATTAGCATATTGTCTATTGAAATTCATGGCTCAAGAACTTGTAGCATTTAACAGGAATCTGAATGGCTGCAAACTGCTCTTAACAAGTGGTTGGATGATGAATATTGTCCAGAGGAAACAAATATTGAGATTAGCAGAATTGCTGCAAATTCATTCTACAGATCATTACTGGAAAATAAAAGTGACATAGGTGAGATACTGTTAACGATGGCTGGAGATTTGGAATCCATATCCTATCAAGAAAGCTTTCATGGAGCATTCTCATCAGCAAATGCAGCAGTGAATCTCATAATCCAACGGCTTGAACAGTACTGATCAAGATTGGCCTCACCCAAAAGTTTTCTCTGAGTTGCATTGATCAGAATTATCCTTTTATAGTGTAGTAAGTACATTATGATTAAGAGAAACATGCTTACACCAATAAGGTTAGAAGGGGCTTATATTGGGGGGAGAAGATTTGAGTTTTAGAACGTGAAGCATGAACCAATGGTGTTATGTTAAGATATGTGTCAGTCATCTCAAAATC-AAGTTATATTTTATGAGT</genome_strand>
        <mrna_strand>TGGCCTCTCACAACTTCATGTTAATGTCCAACTCCAACCAATTACACGTCGTGAAATCGTACACCCATCTATTCATCAATGTATACTTTCTGTCGATAGAATTAGAGCAAGACTCCCGCTTTTAAATGCTCAAACCAATGGAGACTACGACTCTGAGCAGCTAATTGAAGATCTTAGGGTTCCTCAACAGTGGCTACAACCTTCCAAAGCCTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAATGGCTGCAAACTGCTCTTAACAAGTGGTTGGATGATGAATATTGTCCAGAGGAAACAAATATTGAGATTAGCAGAATTGCTGCAAATTCATTCTACAGATCATTACTGGAAAATAAAAGTGACATAGGTGAGATACTGTTAACGATGGCTGGAGATTTGGAATCCATATCCTATCAAGAAAGCTTTCATGGAGCATTCTCATCAGCAAATGCAGCAGTGAATCTCATAATCCAACGGCTTGAACAGTACTGATCAAGATTGGCCTCACCCAAAAGTTTTCTCTGAGTTGCATTGATCAGAATTATCCTTTTATAGTGTAGTAAGTACATTATGATTAAGAGAAACATGCTTACACCAATAAGGTTAGAAGGGGCTTATATTGGGGGGAGAAGATTTGAGTTTTAGAACGTGAAGCATGAACCAATGGTGTTATGTTAAGATATGTGTCAGTCATCTCAAAATCAAAGTTATATTTTATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720613" ref_strand="+" ref_description="SGN-E720613 [FC11BC05]">
      <seq>aatcggccgaatttgatccaacaaagagaagaagaaaaatggcgtggccactgctcacagtctcaggctgctactgtcttggcctctcacaacttcatgttaatgtccaactccaaccaattacacgtcgtgaaatcgtacacccatctattcatcaatgtatactttctgtcgatagaattagagcaagactcccgcttttaaatgctcaaaccaatggagactacgactctgagcagctaattgaagatcttagggttcctcaacagtggctacaaccttccaaagccttggaggaatctgaatggctgcaaactgctcttaacaagtggttggatgatgaatattgtccagaggaaacaaatattgagattagcagaattgctgcaaattcattctacagatcattactggaaaataaaagtgacataggtgagatactgttaacgatggctggagatttggaatccatatcctatcaagaaagctttcatggagcattctcatcagcaaatgcagcagtgaatctcataatccaacggcttgaacagtactgatcaagattggcctcacccaaaagttttctctgagttgcattgatcagaattatccttttatagtgtagtaagtacattatgattaagagaaacatgcttacaccaataaggttagaaggggcttatattggggggagaagatttgagttttagaacgtgaagcatgaaccaatggtgttatgttaagatatgtgtcagtcatctcaaaatcaagttatattttatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40810" stop="37837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40495" g_stop="40226" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="296" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40225" i_stop="38626" i_length="1600">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38625" g_stop="38137" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="785" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E720613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40495" e_stop="40226"/>
          <exon e_start="38625" e_stop="38137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAAAATGGCGTGGCCACTGCTCACAGTCTCAGGCTGCTACTGTCTTGGCCTCTCACAACTTCATGTTAATGTCCAACTCCAACCAATTACACGTCGTGAAATCGTACACCCATCTATTCATCAATGTATACTTTCTGTCGATAGAATTAGAGCAAGACTCCCGCTTTTAAATGCTCAAACCAATGGAGACTACGACTCTGAGCAGCTAATTGAAGATCTTAGGGTTCCTCAACAGTGGCTACAACCTTCCAAAGCCTTGGAGGTAACACCTGCTCGTTTCTCAATCCGAAATTTTATTCTACCAAATCCCCATTTAATGCTCATCTTTGTAATTATTTACTCAACTTCTTTTAACAAATATACAAGGTCCGATGAAGCCAACACATAAGCTTATGGATCCAACCTCTGTTAATTAGCACTACTTACTTGGTTCTGTAGCAAGAATTTGATGCTCACTGACTTGTGGAAACCTTATCCTTGCAATTTAAAACTAAGAGATTCTACTTTGTGTATTACCCATTAAAATGCAATTATATATCTTAAGTTACCTTCTGTTGTTATTGTTAAGAGGATCTGGCTTTTAGCAACCATATATGCATGCCGGCGTAGTTTTCTTGGTAGTCCTCTACGTGGTCACTCAAATCCTGAATTGCTTGGTATATTATAGACCAAAATGTTTGGGGCGTAGTGTTATCCCAAAAAAATGTAGGCTTATCACGCCCCCAAGGCTAGATGCAAAACGCTGCTTAATGTCACAAGTGACCCCAAGCTAACACATGTCATGGCATATCAATACAAGTTCAATTAAAGCATGCACTATGCGGAAGCTAAAAATAGTTTAATATCTGAAATGGTGAAAAAGCCCAAAATATCTGAATATATATAAAATATATGAAAAGTATAGTGATGACGGAAAACAACACTAACAACTCAAGCTGAATCTAATCTATGTCTCAAAGCCTTTAGCTGATCTGAGTTGCAAAGACATGCCCCCAGCTAACTCTGAAAATTCTGAAACTGAAAAATAAATACAAAAGTAAAAGCACTTCTCTCGTCCTCGAACCATGAGGACTCACCGCTGAAGCTGCTAAGTACAGACTGGAAATCGAGCTAAGCGTGGTCTGGATGTTGAGCGTCTGAATCTACATAATATAACGATGTAGCACAAAAGTATGTGTCAGTACTTTGATTGCTTTTGATGCTCGCTCAGTTATCTTTATCCATTACACGAGGGTGAATTGTCATTTTAGATCTTTTGTACATATGTGGCATGGTTGTTGGGTTTATCCTGGGAACATTAGCAAGAGGAGTAGGGCTTCCTTCACATGCTATAAGGTGTCCTTAAATTGAGCTGTTTTTCTTTCCTAATAATGATCTGGCAAGTTTTATTTAGGGTGGAAATCTATTTACTGAATACCTTTAAGATGCCATTTCAGTTACCTTTAGTGTTGAACCTAAGTTGTGGATATTGTGTTATACTATATAGCTTGGCGTGATGGAATTTCATCTTAGAATGCTTGCTAATGTTGTGATGTTGCAAAATCTTGGTATAGCTGGCTGTGATATGTTCCTTTCTACTCCCATTGAAGCAAAAGGGATATAATTCATATCCTCTCTTATTGTATTGTGTTCAGGATCCTTCTTCTGCGTCTGCACATGTTTTGAAATTCATAATCCTAGATAAGAGTTCAACCTTTTTACGCCTTTCTCTTGCTTACTATTTTTGGCTCCCTCTTCCTTATCAGTTTTAGAATAACAATGCAGAGATTTCTGATTGATCTGGTTAAATATGCAGTGAGTAAAGCACAATTAGCATATTGTCTATTGAAATTCATGGCTCAAGAACTTGTAGCATTTAACAGGAATCTGAATGGCTGCAAACTGCTCTTAACAAGTGGTTGGATGATGAATATTGTCCAGAGGAAACAAATATTGAGATTAGCAGAATTGCTGCAAATTCATTCTACAGATCATTACTGGAAAATAAAAGTGACATAGGTGAGATACTGTTAACGATGGCTGGAGATTTGGAATCCATATCCTATCAAGAAAGCTTTCATGGAGCATTCTCATCAGCAAATGCAGCAGTGAATCTCATAATCCAACGGCTTGAACAGTACTGATCAAGATTGGCCTCACCCAAAAGTTTTCTCTGAGTTGCATTGATCAGAATTATCCTTTTATAGTGTAGTAAGTACATTATGATTAAGAGAAACATGCTTACACCAATAAGGTTAGAAGGGGCTTATATTGGGGGGAGAAGATTTGAGTTTTAGAACGTGAAGCATGAACCAATGGTGTTATGTTAAGATATGTGTCAGTCATCTCAAAATCAAGTTATATTTTATGAG</genome_strand>
        <mrna_strand>AGAAGAAGAAAAATGGCGTGGCCACTGCTCACAGTCTCAGGCTGCTACTGTCTTGGCCTCTCACAACTTCATGTTAATGTCCAACTCCAACCAATTACACGTCGTGAAATCGTACACCCATCTATTCATCAATGTATACTTTCTGTCGATAGAATTAGAGCAAGACTCCCGCTTTTAAATGCTCAAACCAATGGAGACTACGACTCTGAGCAGCTAATTGAAGATCTTAGGGTTCCTCAACAGTGGCTACAACCTTCCAAAGCCTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAATGGCTGCAAACTGCTCTTAACAAGTGGTTGGATGATGAATATTGTCCAGAGGAAACAAATATTGAGATTAGCAGAATTGCTGCAAATTCATTCTACAGATCATTACTGGAAAATAAAAGTGACATAGGTGAGATACTGTTAACGATGGCTGGAGATTTGGAATCCATATCCTATCAAGAAAGCTTTCATGGAGCATTCTCATCAGCAAATGCAGCAGTGAATCTCATAATCCAACGGCTTGAACAGTACTGATCAAGATTGGCCTCACCCAAAAGTTTTCTCTGAGTTGCATTGATCAGAATTATCCTTTTATAGTGTAGTAAGTACATTATGATTAAGAGAAACATGCTTACACCAATAAGGTTAGAAGGGGCTTATATTGGGGGGAGAAGATTTGAGTTTTAGAACGTGAAGCATGAACCAATGGTGTTATGTTAAGATATGTGTCAGTCATCTCAAAATCAAGTTATATTTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289208" ref_strand="+" ref_description="SGN-E289208 [cLES-18-A21]">
      <seq>gcgtggccactgctcacagtctcaggctgctactgtcttggcctctcacaacttcatgttaatgtccaactccaaccaattacacgtcgtgaaatcgtacacccatctattcatcaatgtatactttctgtcgatagaattagagcaagactcccgcttttaaatgctcaaaccaatggagactacgactctgagcagctaattgaagatcttagggttcctcaacagtggctacaaccttccaaagccttggaggaatctgaatggctgcaaactgctcttaacaagtggttggatgatgaatattgtccagaggaaacaaatattgagattagcagaattgctgcaaattcattctacagatcattactggaaaataaaagtgacatatgtgagatactgttaacgatggctggagatttggaatccatatcctatcaagaaagctttcatggagcattctcatcagcaaatgcagcagtgaatctcataatccaacggcttgaacagtactgatcaagattggcctcacccaaaagttttctctgagttgcattgatcagaattatccttttatagtgtagtaagtacattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40780" stop="37982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40480" g_stop="40226" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40225" i_stop="38626" i_length="1600">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38625" g_stop="38282" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="599" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E289208" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40480" e_stop="40226"/>
          <exon e_start="38625" e_stop="38282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGGCCACTGCTCACAGTCTCAGGCTGCTACTGTCTTGGCCTCTCACAACTTCATGTTAATGTCCAACTCCAACCAATTACACGTCGTGAAATCGTACACCCATCTATTCATCAATGTATACTTTCTGTCGATAGAATTAGAGCAAGACTCCCGCTTTTAAATGCTCAAACCAATGGAGACTACGACTCTGAGCAGCTAATTGAAGATCTTAGGGTTCCTCAACAGTGGCTACAACCTTCCAAAGCCTTGGAGGTAACACCTGCTCGTTTCTCAATCCGAAATTTTATTCTACCAAATCCCCATTTAATGCTCATCTTTGTAATTATTTACTCAACTTCTTTTAACAAATATACAAGGTCCGATGAAGCCAACACATAAGCTTATGGATCCAACCTCTGTTAATTAGCACTACTTACTTGGTTCTGTAGCAAGAATTTGATGCTCACTGACTTGTGGAAACCTTATCCTTGCAATTTAAAACTAAGAGATTCTACTTTGTGTATTACCCATTAAAATGCAATTATATATCTTAAGTTACCTTCTGTTGTTATTGTTAAGAGGATCTGGCTTTTAGCAACCATATATGCATGCCGGCGTAGTTTTCTTGGTAGTCCTCTACGTGGTCACTCAAATCCTGAATTGCTTGGTATATTATAGACCAAAATGTTTGGGGCGTAGTGTTATCCCAAAAAAATGTAGGCTTATCACGCCCCCAAGGCTAGATGCAAAACGCTGCTTAATGTCACAAGTGACCCCAAGCTAACACATGTCATGGCATATCAATACAAGTTCAATTAAAGCATGCACTATGCGGAAGCTAAAAATAGTTTAATATCTGAAATGGTGAAAAAGCCCAAAATATCTGAATATATATAAAATATATGAAAAGTATAGTGATGACGGAAAACAACACTAACAACTCAAGCTGAATCTAATCTATGTCTCAAAGCCTTTAGCTGATCTGAGTTGCAAAGACATGCCCCCAGCTAACTCTGAAAATTCTGAAACTGAAAAATAAATACAAAAGTAAAAGCACTTCTCTCGTCCTCGAACCATGAGGACTCACCGCTGAAGCTGCTAAGTACAGACTGGAAATCGAGCTAAGCGTGGTCTGGATGTTGAGCGTCTGAATCTACATAATATAACGATGTAGCACAAAAGTATGTGTCAGTACTTTGATTGCTTTTGATGCTCGCTCAGTTATCTTTATCCATTACACGAGGGTGAATTGTCATTTTAGATCTTTTGTACATATGTGGCATGGTTGTTGGGTTTATCCTGGGAACATTAGCAAGAGGAGTAGGGCTTCCTTCACATGCTATAAGGTGTCCTTAAATTGAGCTGTTTTTCTTTCCTAATAATGATCTGGCAAGTTTTATTTAGGGTGGAAATCTATTTACTGAATACCTTTAAGATGCCATTTCAGTTACCTTTAGTGTTGAACCTAAGTTGTGGATATTGTGTTATACTATATAGCTTGGCGTGATGGAATTTCATCTTAGAATGCTTGCTAATGTTGTGATGTTGCAAAATCTTGGTATAGCTGGCTGTGATATGTTCCTTTCTACTCCCATTGAAGCAAAAGGGATATAATTCATATCCTCTCTTATTGTATTGTGTTCAGGATCCTTCTTCTGCGTCTGCACATGTTTTGAAATTCATAATCCTAGATAAGAGTTCAACCTTTTTACGCCTTTCTCTTGCTTACTATTTTTGGCTCCCTCTTCCTTATCAGTTTTAGAATAACAATGCAGAGATTTCTGATTGATCTGGTTAAATATGCAGTGAGTAAAGCACAATTAGCATATTGTCTATTGAAATTCATGGCTCAAGAACTTGTAGCATTTAACAGGAATCTGAATGGCTGCAAACTGCTCTTAACAAGTGGTTGGATGATGAATATTGTCCAGAGGAAACAAATATTGAGATTAGCAGAATTGCTGCAAATTCATTCTACAGATCATTACTGGAAAATAAAAGTGACATAGGTGAGATACTGTTAACGATGGCTGGAGATTTGGAATCCATATCCTATCAAGAAAGCTTTCATGGAGCATTCTCATCAGCAAATGCAGCAGTGAATCTCATAATCCAACGGCTTGAACAGTACTGATCAAGATTGGCCTCACCCAAAAGTTTTCTCTGAGTTGCATTGATCAGAATTATCCTTTTATAGTGTAGTAAGTACATTATGAT</genome_strand>
        <mrna_strand>GCGTGGCCACTGCTCACAGTCTCAGGCTGCTACTGTCTTGGCCTCTCACAACTTCATGTTAATGTCCAACTCCAACCAATTACACGTCGTGAAATCGTACACCCATCTATTCATCAATGTATACTTTCTGTCGATAGAATTAGAGCAAGACTCCCGCTTTTAAATGCTCAAACCAATGGAGACTACGACTCTGAGCAGCTAATTGAAGATCTTAGGGTTCCTCAACAGTGGCTACAACCTTCCAAAGCCTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAATGGCTGCAAACTGCTCTTAACAAGTGGTTGGATGATGAATATTGTCCAGAGGAAACAAATATTGAGATTAGCAGAATTGCTGCAAATTCATTCTACAGATCATTACTGGAAAATAAAAGTGACATATGTGAGATACTGTTAACGATGGCTGGAGATTTGGAATCCATATCCTATCAAGAAAGCTTTCATGGAGCATTCTCATCAGCAAATGCAGCAGTGAATCTCATAATCCAACGGCTTGAACAGTACTGATCAAGATTGGCCTCACCCAAAAGTTTTCTCTGAGTTGCATTGATCAGAATTATCCTTTTATAGTGTAGTAAGTACATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470148" ref_strand="+" ref_description="SGN-E470148 [cSTB-17-K5]">
      <seq>gggaaacagcacaaaagaatggccgcaaacagctggttctcggtgctcacctccaccggcggctctcttacatctcaccgtctcttttcaacatcactaagaccctcttctttcttcattcctaaagctgattcccaaaatcaaaaccataagagaaaagttctcaacaagtcatcctcctctcctcctgagaaagtagctggtaaacagaagttttcacggagatcaaaaaatgaagggccttttgcaaatgcagatggcaggagtagtacaagtgaaacaggacgatctcaatcaacagcaattaaatcatttggtctgcagaaaaaagggaaaggaattatgttagattcaaaggaccagcaggtagaaactggcagcattcaagatgcagcttttcttaatgccgttgtgaaggtttactgtacacatactgctccagattattcccttccttggcagaaacaaagacagttcacaagtactggaagtgctttcatgattggtgatgggaagctcttgacgaatgcgcattgtgttgaacatgatacacaggtcaaagtgaagaaaaggggagatgacacaaaatatgttgctaaagttctagctagaggggtagcgtgtgacatagctttgctatccgtggaaagcaaggaattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40316" stop="45686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40616" g_stop="40798" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.814"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40799" i_stop="42476" i_length="1678">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.477" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42477" g_stop="42650" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="366" r_length="174" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42651" i_stop="43119" i_length="469">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43120" g_stop="43170" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="417" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43171" i_stop="43643" i_length="473">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43644" g_stop="43717" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="491" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43718" i_stop="43934" i_length="217">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43935" g_stop="43998" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="555" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43999" i_stop="45116" i_length="1118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45117" g_stop="45161" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="600" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45162" i_stop="45324" i_length="163">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45325" g_stop="45386" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="662" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E470148" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40616" e_stop="40798"/>
          <exon e_start="42477" e_stop="42650"/>
          <exon e_start="43120" e_stop="43170"/>
          <exon e_start="43644" e_stop="43717"/>
          <exon e_start="43935" e_stop="43998"/>
          <exon e_start="45117" e_stop="45161"/>
          <exon e_start="45325" e_stop="45386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAACAGCACAAAAAAATGGCCGCCGCAAACAGCTGGTTCTCGGTGCTCACCTCCACCGGCGGCTATCTTACATCTCACCGTCTCTTTTCAACATCACTAACATCCTCTTCTTTCTTCA-T--T----C-----CCCAAAATCAAAACTATAAGAGGCAAGTTCTCAACAAGTCATCCTCCTCTCCTCCTGAGGTAAAATCAATGTTTCTACTTGTCATCTTTTTTCTTCATTTTGGATTTTTATTCATGTCAAATTAGTATGTCAATCAAATGGACCACTTTGCGCATTTTGATTATTCTTTTCTTGGCCAAAGATTGCAACTTTTCTACTGTTTTATCCTCAAAGTATTTACTTTTCTGAAGTAAAACAATGTTATTGAAGTGGAAAATCTGATAAAGTAGAGAGTCTATTAAACTACTATACATACAGCAACCTCATTGGTGCACCAAAGAGAAACTAGCGACAAAAGGATAATCCTCAAATGTACAAACACAATTTCAAATGAAGTCAAGTGGAATGACTTAACATGCTATGCACCTTCTTTTCTGATATTATTTGAGCTTTCAATCTGATTTTCTGTTTATATTGTAATGGAGTTCTCATTTATTGGTTGTTTCTCAATAATTCTTCCCTGCTTCATTTTGGTTAGTAAGAAGTAGTCTAACTAATTAGATAACATTCATAGTGTTTACTGCGGAATTACACATATATGCATGTGTTTTTACATTATATATACACACACACTTTAATTTTTTTTATTTCTAATTAGATTACATTCGTAGTGGCTCTGATACCATTAGGCCCAAGGTCTATTTCATAGAGGATAACCCCAATTCAATTGTTTATCCAATGTTGGGTCCCTATCTTATATTGTTCACGCTCTTGTTGTCCAGTCCTAGTGGGCGGGGGGTTTTGAGTCCCATATCGGCGGTGTGTGGGTCTTTTGGTCTCCTTATGCTGTCTTAGGCAGTTCTCACCTCATGAGCTAGCTTTTTGGGGTTAAGTTAGGCCTAAGTTTCATTTCTTTATCAATGTTGAGTCCCAGATCAGTATACTATGTGTTACTTTTTGAACATTTTTTTTTTGAACTTTATGTTTCTTGGTCTCCTTATATGGTGTTAGAGAAATGTTTACCTCATGAGCTAGTTTTTGGGATTGATTTCCATTTGCTTGTCCATGATCCGATGTCCAACCATTGGTGTGAGGTGTATGTGTGCGTGTATCCATGTGTGAAGAAGACTCACATCGATGGCGAAGGGGCTGGCAGTCTCTTATATGGCTTGGGTAATCCTGACCTCTTGAGCTAGCCGTTGGGGTTGAGTTAGGCTCAAGGCCCATTTCATAAACAAGAGTAACTTTAATTTTGAAACTTATATTTCCCGAAATCAGATAAGAAACGACGAATGGAGAGAAGTCCAGAAATTTAGGTGAATGAGAAGGTCACATCAATTTTACAGTGCCAAAAAATGTTTGTGTATATTTTTGCTTGTATTCACTTATTTAACCTCTTGCATGCTTTTTATGATCCAAAAGAGATAATGAATGTCCCCTGAAATCGGAATTAAGATAAGTTGAAAGCATAATTTTGTGTTTACTGGTTTTGTTACTCGATGATAAAGATTGAAAGAAGTATTTTGTGAAGCAGACATCAACACAAGCTTTAAATATGATGATCTCTTACAATGAAACCACCTTTTCTTGTTGGTCCCTAAAACATGATTCAGTTTGAATTGTTGTTATCTGTACTGGGTGTTCTTATGGTTATGCTCATTGGAGCAAGTCATTTTACTTTCTTTCAATTCAGGGAAAAAGTATTTCCTTGTTGTTTATGAATTAAAGTTCTACTAAATAAGCAAGCCATGGATTCAGAAAGTAGCTGGTAAACAGAAGTTTTCACGGAGATCAAAAAATGAAGGGCCTTTTGCAAATGCAGATGGCAGGAGCAGTACAAGTGAAAACGGACGATCTCAATCAACAGCAATTAAATCATTTGGTCTGCAGAAAAAAGGGAAAGGAGTTCTGTTAGATTCGAAGGACCAGCAGGTAAGAAATACAACTGCTTCTCTCCTTTTATTTTGGTGATTTAGATCATTCCGTCTGAAAAACTTGAAATTGGCTTCATGACAAATAAAGCGGGGTATTCTTTTTTTTTAAAAAAAAACAATAAACAAACTATTTGCTAAGGTAATTCAATTTTAAAAAATAAAATAATTTGGGTGATAATTAGCGAAGGCTTTATCCAAGAATTTAAGATTATGAACAAAGACTCATGCCTACTTGTATGGTCACACCTTATTTATCAACCATTCTGAAGATTCTCACCAGATACTCTACCATTGATTTTTTTTTTTACAATATCTCCCACATAATTATATCTCATTACCATTGTGTTTACAAATGCTTGCCAACTGAATGCAAACATTGCTGTCAAGTTCTTTGACTCTACTATGTGCCAAAAACTATTGTTTTCAATTGTGCTATACCACTGAACCTAAATTGGGTTTCTTTCCAGGTAGAAACTGGCAGCATTCAAGATGCAGCTTTTCTTAATGCCGTTGTGAAGGTGAATATATTTAATACATAACAATGTTGTAATTATGCCATTTGTTTGGATGCCTCATTCCAGGAAACTATCAACTTCAGTACTCGTCTTATCCTTAGTTGCTTAGAAAAAGAAATTCATGAAATAACCTCATGTATGATGTCTCCTTAACGTTTTGAATCAACAGTTGCTTCACTGGGCATTCGTAAGGTTGCTGTTGTCCCTGTCCCACATGAAATTATTTTCTTATTGTTTGGTTCTTCCTGTTGAAAGATAATAAAAAGTATACTTCAAATATACTTATGTAGCACTTAGAATGGTGTACACCCAATAGATAGTCTATCTTACCCAGTTTGATTTTTGGCATCAATAGGTCTGTCAAAATTGCTTTCAACATGTCTGCAAGTGCACTTGTGAATGGCTTTTAAATGGATTGCATGATAGTTTTAGTAGTGTTTACTCATTTTCCTTCATTCCATGTTGTTTGCTTCAAGGTTTACTGTACACATACTGCTCCAGATTATTCCCTTCCTTGGCAGAAACAAAGACAATTCACAAGTACTGGAAGGTATGCTCTTCCTCATTTCTAGCTACTTCAAAATTGTGGGAAATTTCCTAGGAAGATTTGTTCTGTAATGCATTATTTACTTTGAATTTTTTTTTTTAAATAGTTCTATAATGTGTTTATTTTCTGACATTGTCTACTATATCTGGTAGGCTGATCCTGTTAAGGGGGGGGGGGGTCGGGATAGCCTACAAGTCTGACTTTAGTTTGATTCATACAGTGCTTTCATGATTGGTGATGGGAAGCTCTTGACGAATGCACATTGTGTTGAACATGATACACAGGTACCTCTGAGGTTTTAATCTTCCCTTTATAAGTATACAAATTCTTATTATTTACGCCCCTCTCTCCTCTAAATTGAATAAAAGGATGTCTCTAATACAATTTGGTGTCAACCAATATTCAGAACAAGTATTTTAGGTTATTTTATGTACCTTCAGGTGTGGGTATACAGATTTATCCTTTCCCCTCCCATTGTGAACAATGTATCTTAGTCATCTAAAACATGGTCTATCAAACCAAAACTGGACGTCCACACTGACCCGAGAAAACATGCATTACTACATTTACGGAAAAAAACTTTTTATTAGTACTTTCTTTAAAGGGCAAAGGAGGTCAGATTTTTTTCTTTTTCTTTTATTTCATAAATGATTAATAACAGCTTGGGATGAGTATAGAGAAAAGGTAAATTTGAACTTTGCCATCCATATATTTATGGCTTTGTGATATGCCATCCACAGTTTTAGGATCGGACTCCACGTCCAACTATTGAAATTTATTTCACTTTGTCTCCTCACCCTTTCACCTGTGAAAACCTAGTGGGAAGGCAAGACTAAAGATTTGTGGTCATTTTTTCCAAATTATCTGGACAAGGCTTTATGACTTCCCAGATAGGAAACTAGAAACAGAAAGGTAAGTGCAGCTCTTTTACCCTCAATTTTGTAGTTTTTTTTACTAGAAAAATGTGGATGGCAAAGTGAAGGGCTGAAGGCTTAGAAACTTTGGACGACATTCTGCAAAATTAAAAAAAAAAAAAGGAGGATAGAAAATGCATCTTTTCCTTCAAAGAAACATAATTTTGATTATCTAGCTCATATCCGATCCAACCTATCCCATAAAGAATTGATCACCGGCAGTCCATATTAGCTAATCTAAGTCCATTTTGTTTACTAATCAATCCATTGTATTTTTGGGATAATATATATCTCCACATTACCACCTGCACTTTTATGACACGCTCATCTCAAGTATATACATAGTGGTCAACTTTGTATTCAGTATTCACTATTGTTGAACACCTGCTATATAGGTGGTCTTCCATCAGTCAAATGAGTAACTATATTTCTACACCATCTGCCTTTCAAATGCTGGTTTTTAGCTTAATTAATATTTTTGGTGACAGGTCAAAGTGAAGAAAAGGGGAGATGACACAAAATACGTTGCTAAGGTATGCTTTTCATGATAAGTTTTAAATGCCTGCATCACTTAGAAATCATTCTAGTGTTATAAATAGTAGTTTTAAGGGTGCAACTATGACGAGGTAGGTTGACAACTTAGACCAAAGTAACCTAATTATGTGGTGCTTAATTCTCATCATGTATGGCATGTAGGTTCTAGCTAGAGGGGTAGCGTGTGACTTAGCTTTGCTATCCGTGGAAAGCAAGGAATTTTG</genome_strand>
        <mrna_strand>GGGAAACAGCACAAAAGAAT-G--GCCGCAAACAGCTGGTTCTCGGTGCTCACCTCCACCGGCGGCTCTCTTACATCTCACCGTCTCTTTTCAACATCACTAAGACCCTCTTCTTTCTTCATTCCTAAAGCTGATTCCCAAAATCAAAACCATAAGAGAAAAGTTCTCAACAAGTCATCCTCCTCTCCTCCTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAGCTGGTAAACAGAAGTTTTCACGGAGATCAAAAAATGAAGGGCCTTTTGCAAATGCAGATGGCAGGAGTAGTACAAGTGAAACAGGACGATCTCAATCAACAGCAATTAAATCATTTGGTCTGCAGAAAAAAGGGAAAGGAATTATGTTAGATTCAAAGGACCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAACTGGCAGCATTCAAGATGCAGCTTTTCTTAATGCCGTTGTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTGTACACATACTGCTCCAGATTATTCCCTTCCTTGGCAGAAACAAAGACAGTTCACAAGTACTGGAAG.........................................................................................................................................................................................................................TGCTTTCATGATTGGTGATGGGAAGCTCTTGACGAATGCGCATTGTGTTGAACATGATACACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGTGAAGAAAAGGGGAGATGACACAAAATATGTTGCTAAA...................................................................................................................................................................GTTCTAGCTAGAGGGGTAGCGTGTGACATAGCTTTGCTATCCGTGGAAAGCAAGGAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459392" ref_strand="+" ref_description="SGN-E459392 [cPRO-27-B4]">
      <seq>ggatcatctgagctgctgggcattcaaatagatgcagcaataaatcctggtaatagtggtggtcctgcattcaatgatgatggagattgcattggagttgcatttcaggtttacagatccgatgatgctgaaaatattggttatgtaatacctactacagttgtatctcattttttggaagactacgagaggaatgggaagtattgtggctttccttgccttggggtgttgttgcaaaaattggagaatccagcgctacgtgcctgcttaaaagtgccatctaacgagggtgtactcgtccggaaagttgagcccacttctgacatcagtaatgttgtgaaagagggcgatgtcattgttagctttgatggggttcatgttgggtgtgaaggaacagtgccgtttcgatcaagtgaacgtatagcttttcgctatctcattagtcaaaaattcactggtgattcagttgagcttggtatcattagagcgggagaatttatgaaagttcaagcagttttgaaagcacgtgtgcatttggttccatatcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49604" stop="54327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49904" g_stop="49952" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49953" i_stop="50112" i_length="160">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50113" g_stop="50171" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="108" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50172" i_stop="50723" i_length="552">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50724" g_stop="50823" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="208" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50824" i_stop="51614" i_length="791">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51615" g_stop="51694" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="288" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51695" i_stop="52396" i_length="702">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52397" g_stop="52453" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="345" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52454" i_stop="53382" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53383" g_stop="53486" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="449" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53487" i_stop="53926" i_length="440">
            <donor d_prob="0.630" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53927" g_stop="54014" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="537" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54015" i_stop="54108" i_length="94">
            <donor d_prob="0.865" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54109" g_stop="54122" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="551" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E459392" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49904" e_stop="49952"/>
          <exon e_start="50113" e_stop="50171"/>
          <exon e_start="50724" e_stop="50823"/>
          <exon e_start="51615" e_stop="51694"/>
          <exon e_start="52397" e_stop="52453"/>
          <exon e_start="53383" e_stop="53486"/>
          <exon e_start="53927" e_stop="54014"/>
          <exon e_start="54109" e_stop="54122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATCTGAGCTGCTGGGCATTCAAATAGATGCAGCAATAAATCCTGGTAAATGGATGTTGAAATAAGACCGTTCCTATAATCAGCCCGTAGAAATTTACTCTTATCAATCTTGTATTAGAACTTATCCATGCTTACATACTCGGATCTATAGTTGTATTTTTTCTTGCTTTAATATAGTTGCTGCTACTAATGGCAAGACTTTTAGGTAATAGTGGTGGTCCTGCATTCAATGATGACGGAGATTGCATTGGAGTTGCATTTCAGGTAGTTGCTTGTCAGATTTGGATAATGGTTATTCATGTGACCAGATTCTTGCTTCTTTGGGCTTGCCACTTTAGTTTACACAGTCCTCTCTTTTAGGGAACTTTGGTAATGCAACTAGTTTGAAATGATTACTTAATCACATAATTGAAGTAGTTTATTTTATTGCTGCTGTTATCTTCATCTGTTTTAAAAGACATTCTGATTCTAATTTAAGAGCTCGCCCCAAGGCAAACCATAATACTATCGCTTGGCCAACTAGGGGTGGTAACATGCTTATGGTCATGAGCTCTATCAACAGTTCTTCAAATCACTTTTTGTATTTGACACTAGTTTTTTTAATTTTGCTTGATCTACTTATTGAATGAGTTCAATAACTCCTCAGGGTATAAAATGTTTCCTAGTGCATTTGCCTTAAAAACCATGATGATCAGCATACTGTTCTTCCACTATGTTTGACAAAGTTATGATCTTCTTCAAGAATCTCAAGTTATTTGTTTTTTACTTTATGTGTTGCTTTCATATTTTCTATTGCTTACCCAACAACTTCTTTAGGTTTACAGATCCGATGATGCTGAAAATATTGGTTATGTAATACCTACTACAGTTGTATCTCATTTTTTGGAAGACTACGAGAGGAATGGGAAGTATTGCGGTGAGTCTGTCTCCTTTTCAGGAAGTATCTGCTCATTCAGGCCACCTAAATGGCTATGGATTTGCAAACAGTCTGTTTTGTTTCCAGCTACACAGTTTAACGAAGATTATCTATTTTCTTGGATTAGATTATGACAACTGACTGTTCTCTGAGATTAGCTTCATTTCAATCTGTTTGGTCCAAATTCCATATCTGTTTTTAATATACATCAAGCTTGGATTTCTTAAGTTCGATTGTGTTGCTGGAAAAATCAATTAATATGTAAATGTAGACTAAAAAAAGCGTACTTGTGAGTTGCATGTTATAGAAATATACTCAGCTCTAAACTTCAAATATGAGCTTATTTTGAATCTAACCAACTGACCACTACACTTGCTCCTATGTCATTTGCCAATCATGTAACTTAGTTGTTGCCTGTTGGCTTGTCATGATGTCTATCTGTTATTGTGTAATGATGATGCTTGATAAGAGAGGGAATAAGATAACATTTAACTCCAGAGGGTGGTTGGGTTTGCTTAATGAGAAGGCGGCTGAACGAATGGAAATTTCACCGAGCAGCTCAGCCTGTGACATGAAGGCGTATGTGGAAGAAGCACGTACACCACTTGGTTCTGTGAAAGGAAAAAGGAGAGTATAAGGTGTTTCTGAAATAACTAAAAACTTGGCATTATTAATGTGTTTAAGGGGTTGGCTGCACAGGGGCTCATGGATTTTTGTTGGTACCTAAGAATTTTGCTTATGTTATTTGCTTCCCTGCTATCCTTAATCACAATATTGTCTTATGCTTTCAGGCTTTCCTTGCCTTGGGGTGTTGTTGCAAAAATTGGAGAATCCAGCGCTACGTGCCTGCTTAAAAGTGCCATCTAACGAGGTCTGTTTATGTACACCTATACAGAATAAAAGTCCTTCATCTGCTCTTCAGAGTGATAGTCTTTCTCTGTAGAGTTCATCAACCCCACCCCCCACCCCCACCCCTCCCGCCCACCCCACGGTCCGTGCTTTGTTTTCCCTTTTTGTGTGTGTAATTGGTGAATTCATTGATCAATATAAAAAAAAAGTTGCCTGCTGCTGACATTGATCAATTAGATACATAGGAACACATTCAGAGAAACAATTTAAAGAAAATGTGGAAGGCATCCTTAGGCTTAAGCGTGTGAAAATTGAACTTATTTGGGTATGGATTTGAGCTGAGTAAAGCTAACTTATCTTCATAAACACCAATGGTGAACATTTTAATAGTTGACTAATTTTTATTCAAGAGGAAGTCATCCTGAATGAAGCAGCATTTACAATATCTTCTGCATACTGGACACTTCTGGTCTCTAATAATACTTTGTGCCTCATCCGGAAAAAGAAAAAGAATTAGTCCTTTGTGAAAGCAAACCCATTTTGAAATTCATCCAACTGAATCCACCTTGGCAGTAAGATGTTCTGAGACATAGATGTGTAGTGGTTATTCAGTTGATTGTATGACATAGATGTTTAGTGGTAATTTAGTTGATTGTGTGGAAAATTCGGTACTCGTATAATGCTTCTAGACGTCCTCTTATACAGCTGGTTTTTCGTTTGATAGGGTGTACTCGTCCGGAAAGTTGAGCCCACTTCTGACATCAGTAATGTTGTGAAAGAGGTATTTCTATTCTTTATTTCAGCAGGTTATTGCTGATTTTACTGTTAAACATTGATTTCTTTGCACCACTATCAATGTCAGCAGTTGGTAGCTCTGTTCTTTTATGACAGTTTTATTTTTGCCAGAGAGCCTACGCTTAATGGTATTTATTTCACGATCAAAGTTTTTGAAATATGTAAACCTTGAACTGCAACCTGCAAATGGATGGACCATAAGAAAAAATATTTGATTTGACTGGGTAGTGACAAATGAGAAATTAAAACAATAAGTCTCTGTTGTCATCAGAAGGCCCCTGGAAGTCATAGGCTCATGACTCCAGGCATCTACATTATTAAATAGTGTGCTTCACTTCTTCTCCGTCCATTTGTGTCAATTTACTTGATTTAGTCATTACAATCGGTTCTATCTAGAAAATGGTGTGATTGATTAATATAGTTATGTTCACCTCCTCCTTCCTTCATAGCAGGTAACTTCTTTGAAACAATATCCACTGAGGATGTGTCTCTGAATAGAGCATAATGAACATGGAAGATTCGTGTCACTGTGTCCAAATAGTTTGGGATTTGGTGTTATTAATTGATTGAATATGAACTAGGGACTCAAGTTATAGATTTTACCTTCTTTTCATTAATTGCTACTTTTACAACATTGATTAACATGCACCATAGATGTGCATGACATGGATATTCTGTTGGTATCTAGTATTCATTTTGCCAGAACATCAGATATTGTCCTATTACTAAATTAATGAACGAGAAAAGAGAATCTTCGATCATGTTTAGTTGGTCCGACCTATTTCTACATTAGCTTATTTGATTTTCTTCTCTTCTTATGTTGTTGCTACAGAAATTTTCTTTGGATAATTGTTTCATATACATGTTGATTTTGTAATGTCACCAAGTCGAATAATATTTGGTACATTTTTCCAGGGCGATGTCATTGTTAGCTTTGATGGTGTTCATGTTGGGTGTGAAGGAACAGTGCCGTTTCGATCAAGTGAACGTATAGCTTTTCGCTATCTCATTAGTCAAAAGTAATGTTTAATTACTTGCAAGAAGTTAAATTTGCATTAAAAGGCATTGGTATGTTTGACAAAGATTTTTTTCATTACATACTTGATACTAAGTTTGACAAAGATTATGCACTTAATGTTCAGTTTGAATGTCAAACTCTGAACTGTTAGTTCATGTAATGGTTACCGATTTTCAAGACAAAACTCCCCCCTTTGTCTTTTCCACATAAGAATCTGCTTCAATTAAAATTTATCAAAGCTAGCAGGGAATGCGTATACTGTGAAGGTTGAATAGTCTTTTTTGTTTTTTTCGTTTTTTTCCTGGTGGATCCATTTCCTTCGTGACCTTGAAATGGATATCAATTTATGCTGGTATTCATTGAATCCCTAATGTCAAAGCTCCAAACTCTCCCCATCTTACCTGTACTGTATATTTTTCAAAGATGGTTTTTCCTTTTCAGATTCACTGGTGATTCAGTTGAGCTTGGTATCATTAGAGCGGGAGAATTCATGAAAGTTCAAGCAATTTTGAAGCCACGTGTGCATTTGGTATAAAATAAATGTTAGCTAACCCTTGGTCTTTTTGTTGACATCACTTGAATCTCAGTTTAATTTATATAGATCTGTTTGCTCTCATCTGAAGGTTCCTTATCACAT</genome_strand>
        <mrna_strand>GGATCATCTGAGCTGCTGGGCATTCAAATAGATGCAGCAATAAATCCTG................................................................................................................................................................GTAATAGTGGTGGTCCTGCATTCAATGATGATGGAGATTGCATTGGAGTTGCATTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACAGATCCGATGATGCTGAAAATATTGGTTATGTAATACCTACTACAGTTGTATCTCATTTTTTGGAAGACTACGAGAGGAATGGGAAGTATTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCCTTGCCTTGGGGTGTTGTTGCAAAAATTGGAGAATCCAGCGCTACGTGCCTGCTTAAAAGTGCCATCTAACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACTCGTCCGGAAAGTTGAGCCCACTTCTGACATCAGTAATGTTGTGAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATGTCATTGTTAGCTTTGATGGGGTTCATGTTGGGTGTGAAGGAACAGTGCCGTTTCGATCAAGTGAACGTATAGCTTTTCGCTATCTCATTAGTCAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACTGGTGATTCAGTTGAGCTTGGTATCATTAGAGCGGGAGAATTTATGAAAGTTCAAGCAGTTTTGAAAGCACGTGTGCATTTG..............................................................................................GTTCCATATCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577970" ref_strand="-" ref_description="SGN-E577970 [LE08CC03]">
      <seq>atagttaagcagcaacaaggagagccttctggttctgcaagacaactagaggttagtcatttatcctcttattgtaaatgtggaatcaagtaacaatccagaacgtgtcaattgcaactagaaaagtgaggtaaggtacgtgttcattctaattccaattggtatatcaggatgaagaagtagatattaggagaaataagaagaatagtgctagaagcctaagagaaatatatgagagaaaacgcgaggaggatgacaaggcaaggatggagacggaggccactattctagcaaggaaagaagaaatgcagagagctgaatctcgaaggaaagaactaagggagaaaatgttcaagaaaactaaatcaggccaaccagtcatgaagtacagaatagaacatattttggaaacacttcaaggatcaaaagtataagtaattgcaaaagacaaaagtctggatgtaagagttatgcttcaagtttctatatcaaagaaaaaaccatcatcttgtccgattaatattacttgactcactatgtcttttgaacttgatgtcttttattcttgcacatctttacttattctatcatttgatttcttagataggaataggagtaccagtagtatttaaagtcttgaattctcattaattttgtaaaggtgaaatcagaatttaattttgatgaatgaatccttccatagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59176" stop="57872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58876" g_stop="58172" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="721"/>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E577970" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577970" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58876" e_stop="58172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAGGTTAGTCATTTATCCTCTTATTGTAATTGTGGAATCAAGTAACAATCCAGAACGTGTCAATTGCAACTAGAAAAGTGAGGTAAGGTACGTGTTCATTCTAATTCCAATTGGTATATCAGGATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTCCGATTAATATTACTTGACTCACTATGTCTTTTGAACTTGATGTCTTTTATTCTTGCACATCTTTACTTATTCTATCATTTGATTTCTTAGATAGGAATAGGAGTACCAGTAGTATTTAAAGTCTTGAATTCTCATTAATTTTGTAAAGGTGAAATCAGAATTTAATTTTGATGAATGAATCCTTCCATAGAA</genome_strand>
        <mrna_strand>ATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAGGTTAGTCATTTATCCTCTTATTGTAAATGTGGAATCAAGTAACAATCCAGAACGTGTCAATTGCAACTAGAAAAGTGAGGTAAGGTACGTGTTCATTCTAATTCCAATTGGTATATCAGGATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTCCGATTAATATTACTTGACTCACTATGTCTTTTGAACTTGATGTCTTTTATTCTTGCACATCTTTACTTATTCTATCATTTGATTTCTTAGATAGGAATAGGAGTACCAGTAGTATTTAAAGTCTTGAATTCTCATTAATTTTGTAAAGGTGAAATCAGAATTTAATTTTGATGAATGAATCCTTCCATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272774" ref_strand="+" ref_description="SGN-E272774 [cLEM-21-D8]">
      <seq>ccaaagattaggaggaggaggcttatcattggaagcatttgcaaacgccaaaaccaagaccaacacttacaaccctgccattataaagaagcaaagggagttttataagaacgctaaatatgtgaataaatataagaggatagttaagcagcaacaaggagagccttctggttctgcaagacaactagaggttagtcatttatcctcttattgtaattgtggaatcaagtaacaatccagaacgtgtcaattgcaactagaaaagtgaggtaaggtacgtgttcattctaattccaattggtatatcaggatgaagaagtagatattaggagaaataagaagaatagtgctagaagcctaagagaaatatatgagagaaaacgcgaggaggatgacaaggcaaggatggagacggaggccactattctagcaaggaaagaagaaatgcagagagctgaatctcgaaggaaagaactaagggagaaaatgttcaagaaaactaaatcaggccaaccagtcatgaagtacagaatagaacatattttggaaacacttcaaggatcaaaagtataagtaattgcaaaagacaaaagtctggatgtaagagttatgcttcaagtttctatatcaaagaaaaaaccatcatcttgtccgattaatattacttgactcactatgtcttttgaacttgatgtcttttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59423" stop="58012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59124" g_stop="59039" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59038" i_stop="58930" i_length="109">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58929" g_stop="58312" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="704" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E272774" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59124" e_stop="59039"/>
          <exon e_start="58929" e_stop="58312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAAGTAATTCTAACCCTTTGGTTTGAGGAATTAAATTATTGTTTCTGAATCTATGGTCTGAAACAGTTGCTTCTAGATATATCTTTAATTGTTCTTTTCTTTTTGTGTGCAGAGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAGGTTAGTCATTTATCCTCTTATTGTAATTGTGGAATCAAGTAACAATCCAGAACGTGTCAATTGCAACTAGAAAAGTGAGGTAAGGTACGTGTTCATTCTAATTCCAATTGGTATATCAGGATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTCCGATTAATATTACTTGACTCACTATGTCTTTTGAACTTGATGTCTTTTATTC</genome_strand>
        <mrna_strand>CCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAA.............................................................................................................AGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAGGTTAGTCATTTATCCTCTTATTGTAATTGTGGAATCAAGTAACAATCCAGAACGTGTCAATTGCAACTAGAAAAGTGAGGTAAGGTACGTGTTCATTCTAATTCCAATTGGTATATCAGGATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTCCGATTAATATTACTTGACTCACTATGTCTTTTGAACTTGATGTCTTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393166" ref_strand="+" ref_description="SGN-E393166 [TUS-38-N21]">
      <seq>gtaaaggcggaaacgaagaagaaagcaaaatgtttcatggatgtggataagaagaagaatatgcaaagattaggaggaggaggcttatcattggaagcatttgcaaacgccaaaaccaagaccaacacttacaaccctgccattataaagaagcaaagggagttttataagaacgctaaatatgtgaataaatataagaggatagttaagcagcaacaaggagagccttctggttctgcaagacaactagaggatgaagaagtagatattaggagaaataagaagaatagtgctagaagcctaagagaaatatatgagagaaaacgcgaggaggatgacaaggcaaggatggagacggaggccactattctagcaaggaaagaagaaatgcagagagctgaatctcgaaggaaagaactaagggagaaaatgttcaagaaaactaaatcaggccaaccagtcatgaagtacagaatagaacatattttggaaacacttcaaggatcaaaagtataagtaattgcaaaagacaaaagtctggatgtaagagttatgcttcaagtttctatatcaaagaaaaaaccatcatcttgtccgattaatattacttgactcactatgtcttttgaacttgatgtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59486" stop="58017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59186" g_stop="59039" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59038" i_stop="58930" i_length="109">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58929" g_stop="58826" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="252" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58825" i_stop="58707" i_length="119">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58706" g_stop="58317" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="642" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E393166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59186" e_stop="59039"/>
          <exon e_start="58929" e_stop="58826"/>
          <exon e_start="58706" e_stop="58317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGCGGAAACGAAGAAGAAAGCAAAATGTTTCATGGATGTGGATAAGAAGAAGAATATGCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAAGTAATTCTAACCCTTTGGTTTGAGGAATTAAATTATTGTTTCTGAATCTATGGTCTGAAACAGTTGCTTCTAGATATATCTTTAATTGTTCTTTTCTTTTTGTGTGCAGAGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAGGTTAGTCATTTATCCTCTTATTGTAATTGTGGAATCAAGTAACAATCCAGAACGTGTCAATTGCAACTAGAAAAGTGAGGTAAGGTACGTGTTCATTCTAATTCCAATTGGTATATCAGGATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTCCGATTAATATTACTTGACTCACTATGTCTTTTGAACTTGATGTCTTT</genome_strand>
        <mrna_strand>GTAAAGGCGGAAACGAAGAAGAAAGCAAAATGTTTCATGGATGTGGATAAGAAGAAGAATATGCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAA.............................................................................................................AGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAG.......................................................................................................................GATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTCCGATTAATATTACTTGACTCACTATGTCTTTTGAACTTGATGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324870" ref_strand="+" ref_description="SGN-E324870 [cTOC-11-H19]">
      <seq>gatgaagaaaatggtaaaggcggaaacgaagaagaaagcaaaatgtttcatggatgtggataagaagaagaatatgcaaagattaggaggaggaggcttatcattggaagcatttgcaaacgccaaaaccaagaccaacacttacaaccctgccattataaagaagcaaagggagttttataagaacgctaaatatgtgaataaatataagaggatagttaagcagcaacaaggagagccttctggttctgcaagacaactagaggatgaagaagtagatattaggagaaataagaagaatagtgctagaagcctaagagaaatatatgagagaaaacgcgaggaggatgacaaggcaaggatggagacggaggccactattctagcaaggaaagaagaaatgcagagagctgaatctcgaaggaaagaactaagggagaaaatgttcaagaaaactaaatcaggccaaccagtcatgaagtacagaatagaacatattttggaaacacttcaaggatcaaaagtataagtaattgcaaaagacaaaagtctggatgtaagagttatgcttcaagtttctatatcaaagaaaaaaccatcatcttgttcgattaatattacttgactcactatgtcttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59499" stop="58029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59199" g_stop="59039" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59038" i_stop="58930" i_length="109">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58929" g_stop="58826" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="265" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58825" i_stop="58707" i_length="119">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58706" g_stop="58321" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="651" r_length="386" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E324870" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59199" e_stop="59039"/>
          <exon e_start="58929" e_stop="58826"/>
          <exon e_start="58706" e_stop="58321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGAAAATGGTAAAGGCGGAAACGAAGAAGAAAGCAAAATGTTTCATGGATGTGGATAAGAAGAAGAATATGCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAAGTAATTCTAACCCTTTGGTTTGAGGAATTAAATTATTGTTTCTGAATCTATGGTCTGAAACAGTTGCTTCTAGATATATCTTTAATTGTTCTTTTCTTTTTGTGTGCAGAGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAGGTTAGTCATTTATCCTCTTATTGTAATTGTGGAATCAAGTAACAATCCAGAACGTGTCAATTGCAACTAGAAAAGTGAGGTAAGGTACGTGTTCATTCTAATTCCAATTGGTATATCAGGATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTCCGATTAATATTACTTGACTCACTATGTCTTTTGAACTTGATGT</genome_strand>
        <mrna_strand>GATGAAGAAAATGGTAAAGGCGGAAACGAAGAAGAAAGCAAAATGTTTCATGGATGTGGATAAGAAGAAGAATATGCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAA.............................................................................................................AGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAG.......................................................................................................................GATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTTCGATTAATATTACTTGACTCACTATGTCTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294366" ref_strand="-" ref_description="SGN-E294366 [cLET-14-P22](-)">
      <seq>taaaggcggaaacgaataagaaagcaaaatgtttcatggatgtggataagaagaagaatatgcaaagattaggaggaggaggcttatcattggaagcatttgcaaacgccaaaaccaagaccaacacttacaaccctgccattataaagaagcaaagggagttttataagaacgctgaatatgtgaataaatctaacaggatagttaagcagcaacaaggagagccttctggttctgccagacaactagaggatgaagaagtagatattaggagaaataagaagaatagcgctagaaccctaagataaatatatgagagaaaacgcgaggaggatgacaaggcaaggatggagacggaggccactattctagcaaggaaagaagaaatgcatacagctgaatctccaaggaaagaactaagggagaaaatgttcaagaaaactaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59485" stop="58209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59185" g_stop="59039" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59038" i_stop="58930" i_length="109">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58929" g_stop="58826" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="251" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58825" i_stop="58707" i_length="119">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58706" g_stop="58509" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="449" r_length="198" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E294366" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294366" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59185" e_stop="59039"/>
          <exon e_start="58929" e_stop="58826"/>
          <exon e_start="58706" e_stop="58509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCGGAAACGAAGAAGAAAGCAAAATGTTTCATGGATGTGGATAAGAAGAAGAATATGCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAAGTAATTCTAACCCTTTGGTTTGAGGAATTAAATTATTGTTTCTGAATCTATGGTCTGAAACAGTTGCTTCTAGATATATCTTTAATTGTTCTTTTCTTTTTGTGTGCAGAGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAGGTTAGTCATTTATCCTCTTATTGTAATTGTGGAATCAAGTAACAATCCAGAACGTGTCAATTGCAACTAGAAAAGTGAGGTAAGGTACGTGTTCATTCTAATTCCAATTGGTATATCAGGATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCA</genome_strand>
        <mrna_strand>TAAAGGCGGAAACGAATAAGAAAGCAAAATGTTTCATGGATGTGGATAAGAAGAAGAATATGCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAA.............................................................................................................AGAAGCAAAGGGAGTTTTATAAGAACGCTGAATATGTGAATAAATCTAACAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCCAGACAACTAGAG.......................................................................................................................GATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGCGCTAGAACCCTAAGATAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCATACAGCTGAATCTCCAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294365" ref_strand="+" ref_description="SGN-E294365 [cLET-14-P22]">
      <seq>taaaggcggaaacgaataagaaagcaaaatgtttcatggatgtggataagaagaagaatatgcaaagattaggaggaggaggcttatcattggaagcatttgcaaacgccaaaaccaagaccaacacttacaaccctgccattataaagaagcaaagggagttttataagaacgctgaatatgtgaataaatctaacaggatagttaagcagcaacaaggagagccttctggttctgccagacaactagaggatgaagaagtagatattaggagaaataagaagaatagcgctagaaccctaagataaatatatgagagaaaacgcgaggaggatgacaaggcaaggatggagacggaggccactattctagcaaggaaagaagaaatgcatacagctgaatctccaaggaaagaactaagggagaaaatgttcaagaaaactaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59485" stop="58209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59185" g_stop="59039" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59038" i_stop="58930" i_length="109">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58929" g_stop="58826" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="251" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58825" i_stop="58707" i_length="119">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58706" g_stop="58509" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="449" r_length="198" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E294365" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59185" e_stop="59039"/>
          <exon e_start="58929" e_stop="58826"/>
          <exon e_start="58706" e_stop="58509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCGGAAACGAAGAAGAAAGCAAAATGTTTCATGGATGTGGATAAGAAGAAGAATATGCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAAGTAATTCTAACCCTTTGGTTTGAGGAATTAAATTATTGTTTCTGAATCTATGGTCTGAAACAGTTGCTTCTAGATATATCTTTAATTGTTCTTTTCTTTTTGTGTGCAGAGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAGGTTAGTCATTTATCCTCTTATTGTAATTGTGGAATCAAGTAACAATCCAGAACGTGTCAATTGCAACTAGAAAAGTGAGGTAAGGTACGTGTTCATTCTAATTCCAATTGGTATATCAGGATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCA</genome_strand>
        <mrna_strand>TAAAGGCGGAAACGAATAAGAAAGCAAAATGTTTCATGGATGTGGATAAGAAGAAGAATATGCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAA.............................................................................................................AGAAGCAAAGGGAGTTTTATAAGAACGCTGAATATGTGAATAAATCTAACAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCCAGACAACTAGAG.......................................................................................................................GATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGCGCTAGAACCCTAAGATAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCATACAGCTGAATCTCCAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551659" ref_strand="+" ref_description="SGN-E551659 [cTSB-1-G8]">
      <seq>aatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactcagtgaaaggcaccacaattatgaagtgtggacatacaatgcatatggaatgccacacagagatgatccatcagaaccagtatcgctgccctatatgctctaagtctgttctcaacatgtccggaacttggcaaagattagatatggagattgaagctacagccatgcctgaagaatatcgttatgaggttccaattctgtgcaatgactgtaatagtactggtaaagcattttttcacatacttggccacaaatgcaagcattgtaattcatacaacacccgcatgattggtactggtgaagatccccgatgacatgggtcagcttgattcaagccttttttatttgtttcttctagcgaactgtacaaaggaatctgggatagtccttggataaaacctctctctcatttttctattgcatattgaaaactaattggctccactgagcttaacattgaaggtttctctttactacttatttcctttcctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68770" stop="61543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68585" g_stop="68583" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="47" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="88" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="171" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66204" g_stop="66113" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="263" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="65939" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="333" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65938" i_stop="62762" i_length="3177">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62761" g_stop="62723" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="372" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62722" i_stop="62150" i_length="573">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62149" g_stop="61843" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="679" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="690"/>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E551659" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68585" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66113"/>
          <exon e_start="66008" e_stop="65939"/>
          <exon e_start="62761" e_stop="62723"/>
          <exon e_start="62149" e_stop="61843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCAGTAAAGTTCTATCCATAGCATGACTATTATGTTTCTTTTTCTTCATGCTAATCAGCCTGTCTGGTTAACTTACATATTATACTTGTCTTCCCCTTTCTGTATAGGTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAAAGATTAGATATGGAGGTGTGAAGTTATTTTACTTTTCAGTTAGTCCCTACAAAGTTCTTCCATAATTTATTTTTTGTACTTCGCTACAAGCAATATCCACCATACATACATCCAGTTAAAAAAAGAGTATATGCTGATATATGTATAATTTAAACTATTTATTTAGGGATAGGGGGATGGAGGGGATTATTACATAGGTGTGTTTGATCCCTCACCACATGGTGAAGATTGAAGGGCTCACAGCATGTGAGCTATCCTCCAATCCAGTGCTGATATAGCTTAAACTGATAGGAGGTTGAAAGGACATAGAGAGAAATCAAAGTCGATGCTTTCTTTCCTTGGCATTTTTCTGGAGTGAAGTTGATTGTGCTGTAACAGTCTTTCGGCTTACTGGTTTTGCCTCGATTTTTTTTTTGAAGAGCAACCTTTATTTTTTTGGTGGGAAACTGGTAAACATTGAAGAGCAACCTTATTATAAGGAAGTAATATTAGAGGAACGAGAAATATAGATATTGTTTTTTTCTTGAAACTTTTTTAGAGTCACATATCTAAAAAAGCAGGGTTTTTGTTATTGAGAGACAAAACACAAACCTAAACATAAACCCGTGAAGTTTTAATCCTACATTTGTTGTTTAAAAGCATGGGTTTTGTCACTGAGAGAATGGAGAGCCAGTAATTTAACACACACACACACATAATTTTCTTTGTTTTGTGCCTTTTGGATCTTGTGAGAAATATTGGAAAAAGAATATTATTGAATTGTTGTTGTTTCTACATTATTACATTGAGACCTTGTTTATAGACAAGTAGGATACTATTAACTATTCCTATTTCTATTCGTATTCCTATTCCTATTCTAATAGGATTATATAAACTTAATACTTTCGAATAGGATTGTATAAACCTCTTCCTATTCTAATAGGTTGTATATACCTGTTACTATTTTGAAGTATATGGATCATGTTGGAATCAATAAATGAGTCGATATTACTCAAGAAAGTCACCGAAAAATTGCTTCGAACATGCTCATACGCCAAAGTATTAGATTTGATGGTTGAAAGTGGTCACAATCTAAGAAATAAAATTATATGGGTAGGGTTGGAATGATGGAACGACCTAACTAGAAAACAAAAATCATATAGGAAAGGTCGGATTGATGGTACGCCCCTATTAAAAAAGAGAAATAATATAGGTCGGGTCGGAATGATGGCACAACCTTACGCAAATCTAATTTGAATTACCGGAAAGACGAATGGAACTATGCAAATCAAATTTGAGGAGTCACCGAAAAGAGACGCGGTGCTATGCAACTCAGATATGAAAAGTAGTTCGAAAAAATCCATGGTACTACGCAAATAAATATGAAAAGTAGTCCTGATATGCACAGATGCAAATAAGATATGCAAAAAAAAAAGGTAGTCACCAGAAGGATGTCACAGTGCTACACAAATTAAATATGAAAAAGCAGTCACCCGAAATGCCGCACGGTGCTACAGATATAGGATACAGAAAAGTAGTTACCGGAATGATGGAACGGTGCTCTACACAAATCAGATTTGAGAAAGTAGTCACTGTAATGATGGCACAGAGCTACACAAATTAATTATGAAAAAAGTAATTGCCGAAAAGATGGCACGGTGCTACACAAATTAAATATGAAAGTAGTCGCCGAGAAAATGACACGGTGCTACAAGTTTTGCTAACATAATCGTTGGCCAGACAGGCGACATATATGGGTAATAGCCGCCCGCCGGCAGTGGAAGCTCTTTCATCTATACCAAGATCGCGCAGAGGCTCTGATACCATATGAGAAATATAGGAAAAAAATATTATTGAATTGCTGGTGTTGTTTCTATTTATAGACACTAGAATACAATCCTTTACCTAGTAGGATACGATTTACTATTCATATTTCTATTTGTATTCCTATTCCTATTATAAATAGGATTGTATAAACTGAAATCTATTCTAATAGGATTATATAAACCTCTTCCTGTTCTAATAGGATTGTATTTACCTATTACTATTCTAACACATCTCAATGAGGTGCATTGCTGTTTAGAGTTTTCAAAACATGGTTTGACTTTTGAATCTCGTCCGAAGAAAATTAAGTTGTATCTTGTTTTAAATTTGTTGTTGTGGTAGTATCTCTTACTTGGTGATGGTATATCTGAGTTTGAGTTAGTTTGTGGAATCCTATTTCATTTGTTAGTAACACATACATCTTGGTTTAAGAATTCGTCACCGCTCTTCTGACCTGTTAACATAGACGGTTAATTTGCTGACAAGGGGTCAGATCATGATCGAGCATTAGGCATTGGTTTTGAGAGATATCAGTAACGAGTTAGATTTGAGGTTAGCTGAAGATATGAACTGGGAAAGTTTTTTGACCAAGTTTAGGTGTGTAGTGATTAGGGATAGATGTAAATGATGCTAGATGGACGATTCTGAGGTGCAATTGCAGAAATTTAGAAAAACCTACGAAGATTAAAGAGAGGAAACTAGGGGACAAAACCTTGTCTTCAAGTTAGAACAATCACAAGTTGTCAACATGTGAAATGACATGATTTTAGAAGAACTCTAGTATAGTTGTATAGATATACTATACTAGATGCAAGTGGTCTTGTTGTAATGATCTTAGGCATGATATTCTCGCTTTCTTTCAAGAGGATTTCATGTTGGTTTTAAAAATGGGTAGATCTGTCAATGGCTGTTGAGAACAGATTGGAACGTACTCTGGTGCACCAAACTCCAAACTGTTCCAGTTGGATATGCTAAAATCGTTATCGACGAGAATGCTATCTCATGTCATAATATGAGAATAAGTTTTTTTGACGGATGTCGTTTTTGTCCCCTTTTTTTTTTTACTTGGGAGTAGAGGAAGATGTGGCTTTTTGGTACTGCAGGTTCTTAACCACACTGCAGTTTATTTGGTAATTGCCATTTGACCTACACAACTCTCTGGAGACTGCATTTTACTGAGCTGGATGATTGGTTGATTCTAAGTTTTAGATATTTTTTTCTGGCTGGGGAAGAAAGCAGAGACTTTACATGGTTTATTCATATATGCATATTTTGAGTCAATATGATCTTCGTGTGTTTGTTGCTCAATTGTTATAGCACATCTCAGCACATGATATTAACCACAGTGCATTGTGATTGTTTATTGATGATCAAGTTTCTTATGTATAGATTGAAGCTACAGCCATGCCTGAAGAATATCGTTATGAGGTATGTTGCTCTTTCTTGTTTTATGATGTTTGTCATTCAAATCTTCTATGGAGTATCTAATAAGGGGAAAAAATATGTTCCAGTATGTTGTCAATTTTTACTTTTATATGATGCTTGTTCATTTTAGATTCCAGTGTTTCCATTTCTATGGAATTTGAAGAAAATTGAGCATAAGAAACTTTTAGTTTTGTAACTTCCTTATTATATATATAAAAAAAAGACAAAAGAAAACAACAACCTGTTGAATTGGGATCTTGGAGACACTTTTTACTTTTTCAAACTTTCTTTTTCTGCCCGAGTACAGCTGGGGAGGTGTCTCTGTGTGTGTGTGGGGGAGGGGGGGTATATCAGTGGAATGGACTAATTAGCAGGAATGGTTTGACCTGGAGCTTTGCTTGTGGATGTTGGTAAGGAGTGGAAGGATCTGACGTATATGATTAGCGAGTGAGAGAGATGAGGTTTAACTTACAGTTTGGTCCCATCTTTTAACTGTTTTATTCTCTTCTTCAGGAACTTTTTTGTTGGTATGATGTTCTTAAGCGGGAATAAGGTTGTACTCTTTTTGTTTTGCAGGTTCCAATTCTGTGCAATGACTGTAATAGTACTGGTAAAGCATTTTTTCACATACTTGGCCACAAATGCAAGCATTGTAATTCATACAACACCCGCATGATTGGTACTGGTGAAGATCCCCGATGACATGGGTCAGCTTGATTCAAGCCTTTTTTATTTGTTTCTTCTAGCGAACTGTACAAAGGAATCTGGGATAGTCCTTGGATAAAACCTCTCTCTCATTTTTCTATTGCATATTGAAAACTAATTGGCTCCACTGAGCTTAACATTGAAGGTTTCTCTTTACTACTTATTTCCTTTCCTCCAA</genome_strand>
        <mrna_strand>AAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA........................................................................................................GTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAAAGATTAGATATGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGCTACAGCCATGCCTGAAGAATATCGTTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATTCTGTGCAATGACTGTAATAGTACTGGTAAAGCATTTTTTCACATACTTGGCCACAAATGCAAGCATTGTAATTCATACAACACCCGCATGATTGGTACTGGTGAAGATCCCCGATGACATGGGTCAGCTTGATTCAAGCCTTTTTTATTTGTTTCTTCTAGCGAACTGTACAAAGGAATCTGGGATAGTCCTTGGATAAAACCTCTCTCTCATTTTTCTATTGCATATTGAAAACTAATTGGCTCCACTGAGCTTAACATTGAAGGTTTCTCTTTACTACTTATTTCCTTTCCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235186" ref_strand="-" ref_description="SGN-E235186 [cLEL-6-E11](-)">
      <seq>gactcagtgaaaggcaccacaattatgaagtgtggacatacaatgcatatggaatgccacacagagatgatccatcagaaccagtatcgctgccctatatgctctaagtctgttctcaacatgtccggaacttggcaaagattagatatggagattgaagctacagccatgcctgaagaatatcgttatgaggttccaattctgtgcaatgactgtaatagtactggtaaagcattttttcacatacttggccacaaatgcaagcattgtaattcatacaacacccgcatgattggtactggtgaagatccccgatgacatgggtcagcttgattcaagccttttttatttgtttcttctagcgaactgtacaaaggaatctgggatagtccttggataaaacctctctctcatttttctattgcatattgaaaactaattggctccactgagcttaacattgaaggtttctctttactactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66495" stop="61559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66195" g_stop="66113" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66008" g_stop="65939" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="153" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65938" i_stop="62762" i_length="3177">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62761" g_stop="62723" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="192" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62722" i_stop="62150" i_length="573">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62149" g_stop="61859" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="483" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E235186" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235186" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66195" e_stop="66113"/>
          <exon e_start="66008" e_stop="65939"/>
          <exon e_start="62761" e_stop="62723"/>
          <exon e_start="62149" e_stop="61859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCAGTAAAGTTCTATCCATAGCATGACTATTATGTTTCTTTTTCTTCATGCTAATCAGCCTGTCTGGTTAACTTACATATTATACTTGTCTTCCCCTTTCTGTATAGGTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAAAGATTAGATATGGAGGTGTGAAGTTATTTTACTTTTCAGTTAGTCCCTACAAAGTTCTTCCATAATTTATTTTTTGTACTTCGCTACAAGCAATATCCACCATACATACATCCAGTTAAAAAAAGAGTATATGCTGATATATGTATAATTTAAACTATTTATTTAGGGATAGGGGGATGGAGGGGATTATTACATAGGTGTGTTTGATCCCTCACCACATGGTGAAGATTGAAGGGCTCACAGCATGTGAGCTATCCTCCAATCCAGTGCTGATATAGCTTAAACTGATAGGAGGTTGAAAGGACATAGAGAGAAATCAAAGTCGATGCTTTCTTTCCTTGGCATTTTTCTGGAGTGAAGTTGATTGTGCTGTAACAGTCTTTCGGCTTACTGGTTTTGCCTCGATTTTTTTTTTGAAGAGCAACCTTTATTTTTTTGGTGGGAAACTGGTAAACATTGAAGAGCAACCTTATTATAAGGAAGTAATATTAGAGGAACGAGAAATATAGATATTGTTTTTTTCTTGAAACTTTTTTAGAGTCACATATCTAAAAAAGCAGGGTTTTTGTTATTGAGAGACAAAACACAAACCTAAACATAAACCCGTGAAGTTTTAATCCTACATTTGTTGTTTAAAAGCATGGGTTTTGTCACTGAGAGAATGGAGAGCCAGTAATTTAACACACACACACACATAATTTTCTTTGTTTTGTGCCTTTTGGATCTTGTGAGAAATATTGGAAAAAGAATATTATTGAATTGTTGTTGTTTCTACATTATTACATTGAGACCTTGTTTATAGACAAGTAGGATACTATTAACTATTCCTATTTCTATTCGTATTCCTATTCCTATTCTAATAGGATTATATAAACTTAATACTTTCGAATAGGATTGTATAAACCTCTTCCTATTCTAATAGGTTGTATATACCTGTTACTATTTTGAAGTATATGGATCATGTTGGAATCAATAAATGAGTCGATATTACTCAAGAAAGTCACCGAAAAATTGCTTCGAACATGCTCATACGCCAAAGTATTAGATTTGATGGTTGAAAGTGGTCACAATCTAAGAAATAAAATTATATGGGTAGGGTTGGAATGATGGAACGACCTAACTAGAAAACAAAAATCATATAGGAAAGGTCGGATTGATGGTACGCCCCTATTAAAAAAGAGAAATAATATAGGTCGGGTCGGAATGATGGCACAACCTTACGCAAATCTAATTTGAATTACCGGAAAGACGAATGGAACTATGCAAATCAAATTTGAGGAGTCACCGAAAAGAGACGCGGTGCTATGCAACTCAGATATGAAAAGTAGTTCGAAAAAATCCATGGTACTACGCAAATAAATATGAAAAGTAGTCCTGATATGCACAGATGCAAATAAGATATGCAAAAAAAAAAGGTAGTCACCAGAAGGATGTCACAGTGCTACACAAATTAAATATGAAAAAGCAGTCACCCGAAATGCCGCACGGTGCTACAGATATAGGATACAGAAAAGTAGTTACCGGAATGATGGAACGGTGCTCTACACAAATCAGATTTGAGAAAGTAGTCACTGTAATGATGGCACAGAGCTACACAAATTAATTATGAAAAAAGTAATTGCCGAAAAGATGGCACGGTGCTACACAAATTAAATATGAAAGTAGTCGCCGAGAAAATGACACGGTGCTACAAGTTTTGCTAACATAATCGTTGGCCAGACAGGCGACATATATGGGTAATAGCCGCCCGCCGGCAGTGGAAGCTCTTTCATCTATACCAAGATCGCGCAGAGGCTCTGATACCATATGAGAAATATAGGAAAAAAATATTATTGAATTGCTGGTGTTGTTTCTATTTATAGACACTAGAATACAATCCTTTACCTAGTAGGATACGATTTACTATTCATATTTCTATTTGTATTCCTATTCCTATTATAAATAGGATTGTATAAACTGAAATCTATTCTAATAGGATTATATAAACCTCTTCCTGTTCTAATAGGATTGTATTTACCTATTACTATTCTAACACATCTCAATGAGGTGCATTGCTGTTTAGAGTTTTCAAAACATGGTTTGACTTTTGAATCTCGTCCGAAGAAAATTAAGTTGTATCTTGTTTTAAATTTGTTGTTGTGGTAGTATCTCTTACTTGGTGATGGTATATCTGAGTTTGAGTTAGTTTGTGGAATCCTATTTCATTTGTTAGTAACACATACATCTTGGTTTAAGAATTCGTCACCGCTCTTCTGACCTGTTAACATAGACGGTTAATTTGCTGACAAGGGGTCAGATCATGATCGAGCATTAGGCATTGGTTTTGAGAGATATCAGTAACGAGTTAGATTTGAGGTTAGCTGAAGATATGAACTGGGAAAGTTTTTTGACCAAGTTTAGGTGTGTAGTGATTAGGGATAGATGTAAATGATGCTAGATGGACGATTCTGAGGTGCAATTGCAGAAATTTAGAAAAACCTACGAAGATTAAAGAGAGGAAACTAGGGGACAAAACCTTGTCTTCAAGTTAGAACAATCACAAGTTGTCAACATGTGAAATGACATGATTTTAGAAGAACTCTAGTATAGTTGTATAGATATACTATACTAGATGCAAGTGGTCTTGTTGTAATGATCTTAGGCATGATATTCTCGCTTTCTTTCAAGAGGATTTCATGTTGGTTTTAAAAATGGGTAGATCTGTCAATGGCTGTTGAGAACAGATTGGAACGTACTCTGGTGCACCAAACTCCAAACTGTTCCAGTTGGATATGCTAAAATCGTTATCGACGAGAATGCTATCTCATGTCATAATATGAGAATAAGTTTTTTTGACGGATGTCGTTTTTGTCCCCTTTTTTTTTTTACTTGGGAGTAGAGGAAGATGTGGCTTTTTGGTACTGCAGGTTCTTAACCACACTGCAGTTTATTTGGTAATTGCCATTTGACCTACACAACTCTCTGGAGACTGCATTTTACTGAGCTGGATGATTGGTTGATTCTAAGTTTTAGATATTTTTTTCTGGCTGGGGAAGAAAGCAGAGACTTTACATGGTTTATTCATATATGCATATTTTGAGTCAATATGATCTTCGTGTGTTTGTTGCTCAATTGTTATAGCACATCTCAGCACATGATATTAACCACAGTGCATTGTGATTGTTTATTGATGATCAAGTTTCTTATGTATAGATTGAAGCTACAGCCATGCCTGAAGAATATCGTTATGAGGTATGTTGCTCTTTCTTGTTTTATGATGTTTGTCATTCAAATCTTCTATGGAGTATCTAATAAGGGGAAAAAATATGTTCCAGTATGTTGTCAATTTTTACTTTTATATGATGCTTGTTCATTTTAGATTCCAGTGTTTCCATTTCTATGGAATTTGAAGAAAATTGAGCATAAGAAACTTTTAGTTTTGTAACTTCCTTATTATATATATAAAAAAAAGACAAAAGAAAACAACAACCTGTTGAATTGGGATCTTGGAGACACTTTTTACTTTTTCAAACTTTCTTTTTCTGCCCGAGTACAGCTGGGGAGGTGTCTCTGTGTGTGTGTGGGGGAGGGGGGGTATATCAGTGGAATGGACTAATTAGCAGGAATGGTTTGACCTGGAGCTTTGCTTGTGGATGTTGGTAAGGAGTGGAAGGATCTGACGTATATGATTAGCGAGTGAGAGAGATGAGGTTTAACTTACAGTTTGGTCCCATCTTTTAACTGTTTTATTCTCTTCTTCAGGAACTTTTTTGTTGGTATGATGTTCTTAAGCGGGAATAAGGTTGTACTCTTTTTGTTTTGCAGGTTCCAATTCTGTGCAATGACTGTAATAGTACTGGTAAAGCATTTTTTCACATACTTGGCCACAAATGCAAGCATTGTAATTCATACAACACCCGCATGATTGGTACTGGTGAAGATCCCCGATGACATGGGTCAGCTTGATTCAAGCCTTTTTTATTTGTTTCTTCTAGCGAACTGTACAAAGGAATCTGGGATAGTCCTTGGATAAAACCTCTCTCTCATTTTTCTATTGCATATTGAAAACTAATTGGCTCCACTGAGCTTAACATTGAAGGTTTCTCTTTACTACTT</genome_strand>
        <mrna_strand>GACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA........................................................................................................GTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAAAGATTAGATATGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGCTACAGCCATGCCTGAAGAATATCGTTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATTCTGTGCAATGACTGTAATAGTACTGGTAAAGCATTTTTTCACATACTTGGCCACAAATGCAAGCATTGTAATTCATACAACACCCGCATGATTGGTACTGGTGAAGATCCCCGATGACATGGGTCAGCTTGATTCAAGCCTTTTTTATTTGTTTCTTCTAGCGAACTGTACAAAGGAATCTGGGATAGTCCTTGGATAAAACCTCTCTCTCATTTTTCTATTGCATATTGAAAACTAATTGGCTCCACTGAGCTTAACATTGAAGGTTTCTCTTTACTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203393" ref_strand="+" ref_description="SGN-E203393 [cLEB-3-F16](-)">
      <seq>ttatgaagtgtggacatacaatgcatatggaatgccacacagagatgatccatcagaaccagtatcgctgccctatatgctctaagtctgttctcaacatgtccggaacttggcaaagattagatatggagattgaagctacagccatgcctgaagaatatcgttatgaggttccaattctgtgcaatgactgtaatagtactggtaaagcattttttcacatacttggccacaaatgcaagcattgtaattcatacaacacccgcatgattggtactggtgaagatccccgatgacatgggtcagcttgattcaagccttttttatttgtttcttctagcgaactgtacaaaggaatctgggatagtccttggataaaacctctctctcatttttctattgcatattgaaaactaattggctccactgagcttaacattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66473" stop="61577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66173" g_stop="66113" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66008" g_stop="65939" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="131" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65938" i_stop="62762" i_length="3177">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62761" g_stop="62723" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="170" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62722" i_stop="62150" i_length="573">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62149" g_stop="61876" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="444" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="461"/>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E203393" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66173" e_stop="66113"/>
          <exon e_start="66008" e_stop="65939"/>
          <exon e_start="62761" e_stop="62723"/>
          <exon e_start="62149" e_stop="61876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCAGTAAAGTTCTATCCATAGCATGACTATTATGTTTCTTTTTCTTCATGCTAATCAGCCTGTCTGGTTAACTTACATATTATACTTGTCTTCCCCTTTCTGTATAGGTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAAAGATTAGATATGGAGGTGTGAAGTTATTTTACTTTTCAGTTAGTCCCTACAAAGTTCTTCCATAATTTATTTTTTGTACTTCGCTACAAGCAATATCCACCATACATACATCCAGTTAAAAAAAGAGTATATGCTGATATATGTATAATTTAAACTATTTATTTAGGGATAGGGGGATGGAGGGGATTATTACATAGGTGTGTTTGATCCCTCACCACATGGTGAAGATTGAAGGGCTCACAGCATGTGAGCTATCCTCCAATCCAGTGCTGATATAGCTTAAACTGATAGGAGGTTGAAAGGACATAGAGAGAAATCAAAGTCGATGCTTTCTTTCCTTGGCATTTTTCTGGAGTGAAGTTGATTGTGCTGTAACAGTCTTTCGGCTTACTGGTTTTGCCTCGATTTTTTTTTTGAAGAGCAACCTTTATTTTTTTGGTGGGAAACTGGTAAACATTGAAGAGCAACCTTATTATAAGGAAGTAATATTAGAGGAACGAGAAATATAGATATTGTTTTTTTCTTGAAACTTTTTTAGAGTCACATATCTAAAAAAGCAGGGTTTTTGTTATTGAGAGACAAAACACAAACCTAAACATAAACCCGTGAAGTTTTAATCCTACATTTGTTGTTTAAAAGCATGGGTTTTGTCACTGAGAGAATGGAGAGCCAGTAATTTAACACACACACACACATAATTTTCTTTGTTTTGTGCCTTTTGGATCTTGTGAGAAATATTGGAAAAAGAATATTATTGAATTGTTGTTGTTTCTACATTATTACATTGAGACCTTGTTTATAGACAAGTAGGATACTATTAACTATTCCTATTTCTATTCGTATTCCTATTCCTATTCTAATAGGATTATATAAACTTAATACTTTCGAATAGGATTGTATAAACCTCTTCCTATTCTAATAGGTTGTATATACCTGTTACTATTTTGAAGTATATGGATCATGTTGGAATCAATAAATGAGTCGATATTACTCAAGAAAGTCACCGAAAAATTGCTTCGAACATGCTCATACGCCAAAGTATTAGATTTGATGGTTGAAAGTGGTCACAATCTAAGAAATAAAATTATATGGGTAGGGTTGGAATGATGGAACGACCTAACTAGAAAACAAAAATCATATAGGAAAGGTCGGATTGATGGTACGCCCCTATTAAAAAAGAGAAATAATATAGGTCGGGTCGGAATGATGGCACAACCTTACGCAAATCTAATTTGAATTACCGGAAAGACGAATGGAACTATGCAAATCAAATTTGAGGAGTCACCGAAAAGAGACGCGGTGCTATGCAACTCAGATATGAAAAGTAGTTCGAAAAAATCCATGGTACTACGCAAATAAATATGAAAAGTAGTCCTGATATGCACAGATGCAAATAAGATATGCAAAAAAAAAAGGTAGTCACCAGAAGGATGTCACAGTGCTACACAAATTAAATATGAAAAAGCAGTCACCCGAAATGCCGCACGGTGCTACAGATATAGGATACAGAAAAGTAGTTACCGGAATGATGGAACGGTGCTCTACACAAATCAGATTTGAGAAAGTAGTCACTGTAATGATGGCACAGAGCTACACAAATTAATTATGAAAAAAGTAATTGCCGAAAAGATGGCACGGTGCTACACAAATTAAATATGAAAGTAGTCGCCGAGAAAATGACACGGTGCTACAAGTTTTGCTAACATAATCGTTGGCCAGACAGGCGACATATATGGGTAATAGCCGCCCGCCGGCAGTGGAAGCTCTTTCATCTATACCAAGATCGCGCAGAGGCTCTGATACCATATGAGAAATATAGGAAAAAAATATTATTGAATTGCTGGTGTTGTTTCTATTTATAGACACTAGAATACAATCCTTTACCTAGTAGGATACGATTTACTATTCATATTTCTATTTGTATTCCTATTCCTATTATAAATAGGATTGTATAAACTGAAATCTATTCTAATAGGATTATATAAACCTCTTCCTGTTCTAATAGGATTGTATTTACCTATTACTATTCTAACACATCTCAATGAGGTGCATTGCTGTTTAGAGTTTTCAAAACATGGTTTGACTTTTGAATCTCGTCCGAAGAAAATTAAGTTGTATCTTGTTTTAAATTTGTTGTTGTGGTAGTATCTCTTACTTGGTGATGGTATATCTGAGTTTGAGTTAGTTTGTGGAATCCTATTTCATTTGTTAGTAACACATACATCTTGGTTTAAGAATTCGTCACCGCTCTTCTGACCTGTTAACATAGACGGTTAATTTGCTGACAAGGGGTCAGATCATGATCGAGCATTAGGCATTGGTTTTGAGAGATATCAGTAACGAGTTAGATTTGAGGTTAGCTGAAGATATGAACTGGGAAAGTTTTTTGACCAAGTTTAGGTGTGTAGTGATTAGGGATAGATGTAAATGATGCTAGATGGACGATTCTGAGGTGCAATTGCAGAAATTTAGAAAAACCTACGAAGATTAAAGAGAGGAAACTAGGGGACAAAACCTTGTCTTCAAGTTAGAACAATCACAAGTTGTCAACATGTGAAATGACATGATTTTAGAAGAACTCTAGTATAGTTGTATAGATATACTATACTAGATGCAAGTGGTCTTGTTGTAATGATCTTAGGCATGATATTCTCGCTTTCTTTCAAGAGGATTTCATGTTGGTTTTAAAAATGGGTAGATCTGTCAATGGCTGTTGAGAACAGATTGGAACGTACTCTGGTGCACCAAACTCCAAACTGTTCCAGTTGGATATGCTAAAATCGTTATCGACGAGAATGCTATCTCATGTCATAATATGAGAATAAGTTTTTTTGACGGATGTCGTTTTTGTCCCCTTTTTTTTTTTACTTGGGAGTAGAGGAAGATGTGGCTTTTTGGTACTGCAGGTTCTTAACCACACTGCAGTTTATTTGGTAATTGCCATTTGACCTACACAACTCTCTGGAGACTGCATTTTACTGAGCTGGATGATTGGTTGATTCTAAGTTTTAGATATTTTTTTCTGGCTGGGGAAGAAAGCAGAGACTTTACATGGTTTATTCATATATGCATATTTTGAGTCAATATGATCTTCGTGTGTTTGTTGCTCAATTGTTATAGCACATCTCAGCACATGATATTAACCACAGTGCATTGTGATTGTTTATTGATGATCAAGTTTCTTATGTATAGATTGAAGCTACAGCCATGCCTGAAGAATATCGTTATGAGGTATGTTGCTCTTTCTTGTTTTATGATGTTTGTCATTCAAATCTTCTATGGAGTATCTAATAAGGGGAAAAAATATGTTCCAGTATGTTGTCAATTTTTACTTTTATATGATGCTTGTTCATTTTAGATTCCAGTGTTTCCATTTCTATGGAATTTGAAGAAAATTGAGCATAAGAAACTTTTAGTTTTGTAACTTCCTTATTATATATATAAAAAAAAGACAAAAGAAAACAACAACCTGTTGAATTGGGATCTTGGAGACACTTTTTACTTTTTCAAACTTTCTTTTTCTGCCCGAGTACAGCTGGGGAGGTGTCTCTGTGTGTGTGTGGGGGAGGGGGGGTATATCAGTGGAATGGACTAATTAGCAGGAATGGTTTGACCTGGAGCTTTGCTTGTGGATGTTGGTAAGGAGTGGAAGGATCTGACGTATATGATTAGCGAGTGAGAGAGATGAGGTTTAACTTACAGTTTGGTCCCATCTTTTAACTGTTTTATTCTCTTCTTCAGGAACTTTTTTGTTGGTATGATGTTCTTAAGCGGGAATAAGGTTGTACTCTTTTTGTTTTGCAGGTTCCAATTCTGTGCAATGACTGTAATAGTACTGGTAAAGCATTTTTTCACATACTTGGCCACAAATGCAAGCATTGTAATTCATACAACACCCGCATGATTGGTACTGGTGAAGATCCCCGATGACATGGGTCAGCTTGATTCAAGCCTTTTTTATTTGTTTCTTCTAGCGAACTGTACAAAGGAATCTGGGATAGTCCTTGGATAAAACCTCTCTCTCATTTTTCTATTGCATATTGAAAACTAATTGGCTCCACTGAGCTTAACATTGAAG</genome_strand>
        <mrna_strand>TTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA........................................................................................................GTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAAAGATTAGATATGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGCTACAGCCATGCCTGAAGAATATCGTTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATTCTGTGCAATGACTGTAATAGTACTGGTAAAGCATTTTTTCACATACTTGGCCACAAATGCAAGCATTGTAATTCATACAACACCCGCATGATTGGTACTGGTGAAGATCCCCGATGACATGGGTCAGCTTGATTCAAGCCTTTTTTATTTGTTTCTTCTAGCGAACTGTACAAAGGAATCTGGGATAGTCCTTGGATAAAACCTCTCTCTCATTTTTCTATTGCATATTGAAAACTAATTGGCTCCACTGAGCTTAACATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234514" ref_strand="-" ref_description="SGN-E234514 [cLEL-6-E11](-)">
      <seq>ctcagtgaaaggctttttaattatgaagtgtggacatacaatgcatatggaatgccacacagagatgatccatcagaaccagtatcgctgccctatatgctctaagtctgttctcaacatgtccggaacttggcaaagattagatatggagattgaagctacagccatgcctgaagaatatcgttatgaggttccaattctgtgcaatgactgtaatagtactggtaaagcattttttcacatacttggccacaaatgcaagcattgtaattcatacaacacccgcatgattggtgctggtgaagatccccgatgacatgggtcagcttgattcaagccttttttatttgtttcttctagcgaactgtacaaaggaatctgggatagtccttggataaaacctctctctcatttttctattgcatattgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66475" stop="61605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66193" g_stop="66113" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66008" g_stop="65939" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="151" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65938" i_stop="62762" i_length="3177">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62761" g_stop="62723" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="190" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62722" i_stop="62150" i_length="573">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62149" g_stop="61905" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="435" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E234514" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234514" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66193" e_stop="66113"/>
          <exon e_start="66008" e_stop="65939"/>
          <exon e_start="62761" e_stop="62723"/>
          <exon e_start="62149" e_stop="61905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCAGTAAAGTTCTATCCATAGCATGACTATTATGTTTCTTTTTCTTCATGCTAATCAGCCTGTCTGGTTAACTTACATATTATACTTGTCTTCCCCTTTCTGTATAGGTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAAAGATTAGATATGGAGGTGTGAAGTTATTTTACTTTTCAGTTAGTCCCTACAAAGTTCTTCCATAATTTATTTTTTGTACTTCGCTACAAGCAATATCCACCATACATACATCCAGTTAAAAAAAGAGTATATGCTGATATATGTATAATTTAAACTATTTATTTAGGGATAGGGGGATGGAGGGGATTATTACATAGGTGTGTTTGATCCCTCACCACATGGTGAAGATTGAAGGGCTCACAGCATGTGAGCTATCCTCCAATCCAGTGCTGATATAGCTTAAACTGATAGGAGGTTGAAAGGACATAGAGAGAAATCAAAGTCGATGCTTTCTTTCCTTGGCATTTTTCTGGAGTGAAGTTGATTGTGCTGTAACAGTCTTTCGGCTTACTGGTTTTGCCTCGATTTTTTTTTTGAAGAGCAACCTTTATTTTTTTGGTGGGAAACTGGTAAACATTGAAGAGCAACCTTATTATAAGGAAGTAATATTAGAGGAACGAGAAATATAGATATTGTTTTTTTCTTGAAACTTTTTTAGAGTCACATATCTAAAAAAGCAGGGTTTTTGTTATTGAGAGACAAAACACAAACCTAAACATAAACCCGTGAAGTTTTAATCCTACATTTGTTGTTTAAAAGCATGGGTTTTGTCACTGAGAGAATGGAGAGCCAGTAATTTAACACACACACACACATAATTTTCTTTGTTTTGTGCCTTTTGGATCTTGTGAGAAATATTGGAAAAAGAATATTATTGAATTGTTGTTGTTTCTACATTATTACATTGAGACCTTGTTTATAGACAAGTAGGATACTATTAACTATTCCTATTTCTATTCGTATTCCTATTCCTATTCTAATAGGATTATATAAACTTAATACTTTCGAATAGGATTGTATAAACCTCTTCCTATTCTAATAGGTTGTATATACCTGTTACTATTTTGAAGTATATGGATCATGTTGGAATCAATAAATGAGTCGATATTACTCAAGAAAGTCACCGAAAAATTGCTTCGAACATGCTCATACGCCAAAGTATTAGATTTGATGGTTGAAAGTGGTCACAATCTAAGAAATAAAATTATATGGGTAGGGTTGGAATGATGGAACGACCTAACTAGAAAACAAAAATCATATAGGAAAGGTCGGATTGATGGTACGCCCCTATTAAAAAAGAGAAATAATATAGGTCGGGTCGGAATGATGGCACAACCTTACGCAAATCTAATTTGAATTACCGGAAAGACGAATGGAACTATGCAAATCAAATTTGAGGAGTCACCGAAAAGAGACGCGGTGCTATGCAACTCAGATATGAAAAGTAGTTCGAAAAAATCCATGGTACTACGCAAATAAATATGAAAAGTAGTCCTGATATGCACAGATGCAAATAAGATATGCAAAAAAAAAAGGTAGTCACCAGAAGGATGTCACAGTGCTACACAAATTAAATATGAAAAAGCAGTCACCCGAAATGCCGCACGGTGCTACAGATATAGGATACAGAAAAGTAGTTACCGGAATGATGGAACGGTGCTCTACACAAATCAGATTTGAGAAAGTAGTCACTGTAATGATGGCACAGAGCTACACAAATTAATTATGAAAAAAGTAATTGCCGAAAAGATGGCACGGTGCTACACAAATTAAATATGAAAGTAGTCGCCGAGAAAATGACACGGTGCTACAAGTTTTGCTAACATAATCGTTGGCCAGACAGGCGACATATATGGGTAATAGCCGCCCGCCGGCAGTGGAAGCTCTTTCATCTATACCAAGATCGCGCAGAGGCTCTGATACCATATGAGAAATATAGGAAAAAAATATTATTGAATTGCTGGTGTTGTTTCTATTTATAGACACTAGAATACAATCCTTTACCTAGTAGGATACGATTTACTATTCATATTTCTATTTGTATTCCTATTCCTATTATAAATAGGATTGTATAAACTGAAATCTATTCTAATAGGATTATATAAACCTCTTCCTGTTCTAATAGGATTGTATTTACCTATTACTATTCTAACACATCTCAATGAGGTGCATTGCTGTTTAGAGTTTTCAAAACATGGTTTGACTTTTGAATCTCGTCCGAAGAAAATTAAGTTGTATCTTGTTTTAAATTTGTTGTTGTGGTAGTATCTCTTACTTGGTGATGGTATATCTGAGTTTGAGTTAGTTTGTGGAATCCTATTTCATTTGTTAGTAACACATACATCTTGGTTTAAGAATTCGTCACCGCTCTTCTGACCTGTTAACATAGACGGTTAATTTGCTGACAAGGGGTCAGATCATGATCGAGCATTAGGCATTGGTTTTGAGAGATATCAGTAACGAGTTAGATTTGAGGTTAGCTGAAGATATGAACTGGGAAAGTTTTTTGACCAAGTTTAGGTGTGTAGTGATTAGGGATAGATGTAAATGATGCTAGATGGACGATTCTGAGGTGCAATTGCAGAAATTTAGAAAAACCTACGAAGATTAAAGAGAGGAAACTAGGGGACAAAACCTTGTCTTCAAGTTAGAACAATCACAAGTTGTCAACATGTGAAATGACATGATTTTAGAAGAACTCTAGTATAGTTGTATAGATATACTATACTAGATGCAAGTGGTCTTGTTGTAATGATCTTAGGCATGATATTCTCGCTTTCTTTCAAGAGGATTTCATGTTGGTTTTAAAAATGGGTAGATCTGTCAATGGCTGTTGAGAACAGATTGGAACGTACTCTGGTGCACCAAACTCCAAACTGTTCCAGTTGGATATGCTAAAATCGTTATCGACGAGAATGCTATCTCATGTCATAATATGAGAATAAGTTTTTTTGACGGATGTCGTTTTTGTCCCCTTTTTTTTTTTACTTGGGAGTAGAGGAAGATGTGGCTTTTTGGTACTGCAGGTTCTTAACCACACTGCAGTTTATTTGGTAATTGCCATTTGACCTACACAACTCTCTGGAGACTGCATTTTACTGAGCTGGATGATTGGTTGATTCTAAGTTTTAGATATTTTTTTCTGGCTGGGGAAGAAAGCAGAGACTTTACATGGTTTATTCATATATGCATATTTTGAGTCAATATGATCTTCGTGTGTTTGTTGCTCAATTGTTATAGCACATCTCAGCACATGATATTAACCACAGTGCATTGTGATTGTTTATTGATGATCAAGTTTCTTATGTATAGATTGAAGCTACAGCCATGCCTGAAGAATATCGTTATGAGGTATGTTGCTCTTTCTTGTTTTATGATGTTTGTCATTCAAATCTTCTATGGAGTATCTAATAAGGGGAAAAAATATGTTCCAGTATGTTGTCAATTTTTACTTTTATATGATGCTTGTTCATTTTAGATTCCAGTGTTTCCATTTCTATGGAATTTGAAGAAAATTGAGCATAAGAAACTTTTAGTTTTGTAACTTCCTTATTATATATATAAAAAAAAGACAAAAGAAAACAACAACCTGTTGAATTGGGATCTTGGAGACACTTTTTACTTTTTCAAACTTTCTTTTTCTGCCCGAGTACAGCTGGGGAGGTGTCTCTGTGTGTGTGTGGGGGAGGGGGGGTATATCAGTGGAATGGACTAATTAGCAGGAATGGTTTGACCTGGAGCTTTGCTTGTGGATGTTGGTAAGGAGTGGAAGGATCTGACGTATATGATTAGCGAGTGAGAGAGATGAGGTTTAACTTACAGTTTGGTCCCATCTTTTAACTGTTTTATTCTCTTCTTCAGGAACTTTTTTGTTGGTATGATGTTCTTAAGCGGGAATAAGGTTGTACTCTTTTTGTTTTGCAGGTTCCAATTCTGTGCAATGACTGTAATAGTACTGGTAAAGCATTTTTTCACATACTTGGCCACAAATGCAAGCATTGTAATTCATACAACACCCGCATGATTGGTACTGGTGAAGATCCCCGATGACATGGGTCAGCTTGATTCAAGCCTTTTTTATTTGTTTCTTCTAGCGAACTGTACAAAGGAATCTGGGATAGTCCTTGGATAAAACCTCTCTCTCATTTTTCTATTGCATATTGAAAACT</genome_strand>
        <mrna_strand>CTCAGTGAAAGGCTTTTTAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA........................................................................................................GTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAAAGATTAGATATGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGCTACAGCCATGCCTGAAGAATATCGTTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATTCTGTGCAATGACTGTAATAGTACTGGTAAAGCATTTTTTCACATACTTGGCCACAAATGCAAGCATTGTAATTCATACAACACCCGCATGATTGGTGCTGGTGAAGATCCCCGATGACATGGGTCAGCTTGATTCAAGCCTTTTTTATTTGTTTCTTCTAGCGAACTGTACAAAGGAATCTGGGATAGTCCTTGGATAAAACCTCTCTCTCATTTTTCTATTGCATATTGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728748" ref_strand="+" ref_description="SGN-E728748 [LA18DC10]">
      <seq>gcaaccaaatttcaccacatacctctactctcgaaccttttacatggacgaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactcagtgaaaggcaccacaattatgaagtgtggacatacaatgcatatggaatgccacacagagatgatccatcagaaccagtatcgctgccctatatgctctaagtctgttctcaacatgtccggaacttggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70061" stop="65654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69761" g_stop="69627" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="223" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="280" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="313" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="391" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="435" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="476" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="559" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66113" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="651" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66008" g_stop="65954" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="706" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E728748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69761" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66113"/>
          <exon e_start="66008" e_stop="65954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCAAATTTCACCACATACCTCTACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCAGTAAAGTTCTATCCATAGCATGACTATTATGTTTCTTTTTCTTCATGCTAATCAGCCTGTCTGGTTAACTTACATATTATACTTGTCTTCCCCTTTCTGTATAGGTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAA</genome_strand>
        <mrna_strand>GCAACCAAATTTCACCACATACCTCTACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA........................................................................................................GTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274794" ref_strand="+" ref_description="SGN-E274794 [cLEN-13-K12]">
      <seq>gaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactcagtgaaaggcaccacaattatgaagtgtggacatacaatgcatatggaatgccacacagagatgatccatcagaaccagtatcgctgccctatatgctctaagtctgttctcaacatgtccggaacttggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70012" stop="65654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69712" g_stop="69627" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="174" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="231" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="264" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="342" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="386" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="427" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="510" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66113" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="602" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66008" g_stop="65954" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="657" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E274794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69712" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66113"/>
          <exon e_start="66008" e_stop="65954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCAGTAAAGTTCTATCCATAGCATGACTATTATGTTTCTTTTTCTTCATGCTAATCAGCCTGTCTGGTTAACTTACATATTATACTTGTCTTCCCCTTTCTGTATAGGTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAA</genome_strand>
        <mrna_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA........................................................................................................GTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252750" ref_strand="+" ref_description="SGN-E252750 [cLEG-16-L1]">
      <seq>cgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttggcgcattgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactcagtgaaaggcaccacaattatgaagtgtggacatacaatgcatatggaatgccacacagagatgatccatcagaaccagtatcgctgccctatatgctctaagtctgttctcaacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69971" stop="65668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69671" g_stop="69627" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="133" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="186" r_length="53" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="219" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="297" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="341" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="382" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="465" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66113" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="557" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66008" g_stop="65968" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="598" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E252750" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69671" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66113"/>
          <exon e_start="66008" e_stop="65968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCAGTAAAGTTCTATCCATAGCATGACTATTATGTTTCTTTTTCTTCATGCTAATCAGCCTGTCTGGTTAACTTACATATTATACTTGTCTTCCCCTTTCTGTATAGGTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGT</genome_strand>
        <mrna_strand>CGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTG-GCG---CATTGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA........................................................................................................GTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274798" ref_strand="+" ref_description="SGN-E274798 [cLEN-13-M12]">
      <seq>gaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactcagtgaaaggcaccacaattatgaagtgtggacatacaatgcatatggaatgccacacagagatgatccatcagaaccagtatcgctgccctatatgctctaagtctgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70012" stop="65677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69712" g_stop="69627" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="174" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="231" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="264" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="342" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="386" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="427" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="510" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66113" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="602" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66008" g_stop="65977" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="634" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E274798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69712" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66113"/>
          <exon e_start="66008" e_stop="65977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCAGTAAAGTTCTATCCATAGCATGACTATTATGTTTCTTTTTCTTCATGCTAATCAGCCTGTCTGGTTAACTTACATATTATACTTGTCTTCCCCTTTCTGTATAGGTATCGCTGCCCTATATGCTCTAAGTCTGTTC</genome_strand>
        <mrna_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA........................................................................................................GTATCGCTGCCCTATATGCTCTAAGTCTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276688" ref_strand="+" ref_description="SGN-E276688 [cLEN-14-K12]">
      <seq>gaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactcagtgaaaggcaccacaattatgaagtgtggacatacaatgcatatggaatgccacacagagatgatccatcagaaccagtatcgctgccctatatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70012" stop="65688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69712" g_stop="69627" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="174" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="231" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="264" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="342" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="386" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="427" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="510" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66113" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="602" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66008" g_stop="65988" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="623" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E276688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69712" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66113"/>
          <exon e_start="66008" e_stop="65988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCAGTAAAGTTCTATCCATAGCATGACTATTATGTTTCTTTTTCTTCATGCTAATCAGCCTGTCTGGTTAACTTACATATTATACTTGTCTTCCCCTTTCTGTATAGGTATCGCTGCCCTATATGCTC</genome_strand>
        <mrna_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA........................................................................................................GTATCGCTGCCCTATATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285254" ref_strand="+" ref_description="SGN-E285254 [cLER-20-N12]">
      <seq>gaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactcagtgaaaggcaccacaattatgaagtgtggacatacaatgcatatggaatgccacacagagatgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70012" stop="65823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69712" g_stop="69627" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="174" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="231" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="264" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="342" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="386" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="427" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="510" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66123" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="592" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E285254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69712" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCC</genome_strand>
        <mrna_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438672" ref_strand="+" ref_description="SGN-E438672 [cSTA-9-K13]">
      <seq>agaagacggtgacaattttgtcgttgatcaaccgccgccggcgccgaccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaattttcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggagtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttatgtgtggagaactcaatgaagaaccattgtcccatctgttatgagtttctttttgactcagtgaaaggcaccacaattatgaagtgtggacatacaatgcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70012" stop="65846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69681" g_stop="69627" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="93" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="181" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="238" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="271" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="349" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="393" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="434" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="517" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="0.96"/>
            <acceptor a_prob="0.352" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66146" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="576" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E438672" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69681" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATAT</genome_strand>
        <mrna_strand>CGGCGCCGACCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATTTTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGAGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTATGTGTGGAGAACTCAATGAAGAACCATTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTTGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274662" ref_strand="+" ref_description="SGN-E274662 [cLEN-11-N24]">
      <seq>gaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactcagtgaaaggcaccacaattatgaagtgtggacatacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70012" stop="65851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69712" g_stop="69627" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="174" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="231" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="264" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="342" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="386" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="427" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="510" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66151" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="564" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E274662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69712" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATG</genome_strand>
        <mrna_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202198" ref_strand="+" ref_description="SGN-E202198 [cLEC-7-D6]">
      <seq>gaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70012" stop="65996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69712" g_stop="69627" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="174" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="231" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="264" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="342" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="386" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="427" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="510" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66188" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="527" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E202198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69712" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTCAGT</genome_strand>
        <mrna_strand>GAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259497" ref_strand="+" ref_description="SGN-E259497 [cLEG-42-E16]">
      <seq>tacctctactctcgaaccttttacatggacgaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttcttttcgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70042" stop="65996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69742" g_stop="69627" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="204" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="261" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="294" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="372" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="416" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="457" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="540" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66191" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="554" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E259497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69742" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCTACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTTCGACTC</genome_strand>
        <mrna_strand>TACCTCTACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTTCGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244481" ref_strand="+" ref_description="SGN-E244481 [cLEF-3-P21]">
      <seq>ccaaatttcaccacatacctctactctcgaaccttttacatggacgaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70057" stop="65996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69757" g_stop="69627" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="219" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="276" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="309" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="431" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="472" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="555" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66197" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="563" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E244481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69757" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTTCACCACATACCTCTACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTT</genome_strand>
        <mrna_strand>CCAAATTTCACCACATACCTCTACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214806" ref_strand="+" ref_description="SGN-E214806 [cLEC-79-B20]">
      <seq>aaatttcaccacatacctctactctcgaaccttttacatggacgaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcacttgtgtgtggagaactcaatgaagaaccactgtcccatctgttatgagtttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70055" stop="65996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69755" g_stop="69627" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="217" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="274" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="307" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="385" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="429" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="470" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66300" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="553" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66204" g_stop="66197" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="561" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E214806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69755" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66300"/>
          <exon e_start="66204" e_stop="66197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCACCACATACCTCTACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAGGTTTGAGTATACTCTCATTTGGCTTTTACTGCCTTAACTTGCTCGTATGTTTTGATTGGAACTTACCCTAATAGTAAAGTTATGGTTCGGTCCAGTTTCTTTT</genome_strand>
        <mrna_strand>AAATTTCACCACATACCTCTACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG...............................................................................................TTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201407" ref_strand="+" ref_description="SGN-E201407 [cLEC-4-B22]">
      <seq>acgaagacggtgagaattttgtcgttgatcaaccgccgccgcccgaagaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaatattcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttgtgcgccacaatgttaagcaagttgtttgtgctgtatgcgacactgaacaacaggttgctgagatctgttcagagtgtggcgtcaaatttggggagtactattgtgaaatttgtagattttacgatgacaatagaacaaaggggcagtttcactgtgatgactgtggaatttgcagggtcggtggtcgagaaaacttcttccactgcaagaagtgtggatcctgctattcggtggagctgcgtgataatcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70014" stop="66046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69714" g_stop="69627" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="176" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68910" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="233" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68802" g_stop="68770" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="266" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68660" g_stop="68583" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="344" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68468" g_stop="68425" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="388" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68303" g_stop="68263" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="429" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66382" g_stop="66346" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="466" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E201407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69714" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68910"/>
          <exon e_start="68802" e_stop="68770"/>
          <exon e_start="68660" e_stop="68583"/>
          <exon e_start="68468" e_stop="68425"/>
          <exon e_start="68303" e_stop="68263"/>
          <exon e_start="66382" e_stop="66346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAAGTACGTGTAAAACTCATATTATTGATTTCCTCGGATGATAAGATTTTAGTTCATGAGTACTCAGAACTTTTATGGGGATTGATGTTGGATCTGATTTTTTGCTACAGGTTGTTTGTGCTGTATGCGACACTGAACAACAGGTCTGTTAAGCTCTGTTGCTACACTTATCTATCATTTGAGTGTCTCAAGTTTATGGACTTTTCAGCCGTTGTAGTCTGTGATAATTTTTTTCTGGCTTGTGTTAAATAGGTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAATGTAATTCTACTATTTTATTTTTCTCTTAAATTAGATTGTTCTATTTTTGGATGCTAGAGTAACCATATAAATGTATTTAATTCATTTGTATTTAAGTAATTACTTTTCTTGCAGAGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAGGTGAATGCACTAAATAATATTGTATTCAGCCTCCATTCTGCTCTTACACTTCGGTACTTGTTCCAACTCTCTAAACAACATATATGTCACCTGTGGTACTTATACGCAATTGGTGAAACAGGGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTGGTAAGGCTTCCCTTCATCCTTGTTGTTTGACTACTGTTGTGGATTTCCTTGTATCAAAATGGATCGATTTCTTTTTTCATTTTGAATAGTGTAGTGTATATCTCAACCCTTACTTTATAAAGGAAGGTGTAGATTATATCTCAAGTTGACAACAAGTGATTCTTTTCAACTATAGCTTGTTTCAAAACTGTATTGTGGAAGTGTACTTTTCTCATTTGACAGTTCCTTTCTGAAATTTTACTTTTGAAATGTCCTTTCCATTGAGTCTTAGATAGAACATCTTATATGGTAATAAAGGGATATCCTTGGAACTGGAAGTTGATCTTGTACAACTATATTATTGCATTGTGCATCTACCATCTCATAGCTGTCTACTGGCATCATGCACGGGGACTGACTCACATAGGTACTCCCGGGTGCTCGAGCACCTTATCTCTGTGTCCAACTAAATATATTTCTATAGAAATTAGGCGGAATAGTATAAAACTAAACAACGAGCACCCATAGAATAAATTGTTTGATTGGCGCAGTGGCTGTTTGTGGGTGCTCAAGGTCCTTCGTAATGTTGTGCATCTGGTTTCGACTCCCAGTTGGCACATTTAAATTTTTTACAAACCAACTCTTCTCTCCCTTACTACCGATGTTATATTGATTGTATTTCTATTTTCTTTCACTTGTCGTTTTGCTACTTTTCCTACAATAAGTTTATACAAAATATACTTTTCCTATTTTCTTTATTCAAAATAATATTTATTGTTTTTTTTTGTCTTTTAGCTATAATATTCAATATGATTGTCTTTTTTATGATGAAGAGTAAATTTATCCACTTACATTTTTTGATCGGTAGCTAAGTGGGTTCGGAGCTAGGTAGACGACGAAAAAATTACATTGTTTATATATGGTAATATATATATATATATATACATACATATATGTGTGTGTGTGTGTTAACCCCCTTTGGCTTTTTCGTGTGTTTACATTTTATATTTGTCGCCGCCACCTTAGCTAAGAGAGCACCCACGACCTTAAAATCTCTGATCCGCCACGAACATGCATCTCTATATCAATGAAATAAAGTAACATAAAACCAATAAGCATAACAGAAGTCAAATAGCTAGAACTGCTCATCCTATCAGAATAGAGAGGAAACCTGTCAATAGGGTTGAATCCTCTCTCTCTCTTTCTTAATTCATCGGCCGCTCGATGGTTCTGGAGAATCTTATTGATGATGTGTGGTCAAGTACAAGTTTCTTTTAACTTCCAAATTTGTATAATAATGGTTGTGGTATGTTCCAGTCAGGCATATTCTTCTAAAGGATATAGGAACATAAGTACATTTTCCTTGTAAATTAAGCATGTCTAACTCAAAAAGGTCTCATGTCTATAGGTCCTGTAAGTCTTTTTAGATGGGAAGATGCAGGTTCTGAGGATGCTAAATTCATGTTGGCGAAGAACGAATTTTAGTTGCAAGTCTCTGATAAAGTTGAGCTGTAAATAAACCTTGGTCATAATAAGGCAAAATCTGGAAGGGGAACTCGCTCATCTTGAGGTCACCAATTAGTGTTCTTTGTCTTTTCAGTGATCCATAAAAGATTATAATAAGATGTTAATAAACCTTGTCCATAAAAGATAAATCTGTACAACTTTTTCTCCTTCCTACACATCTGCAAAACTTCAAACGAATGCCTGCATAGTTTGCTGTATTTCAATAGATTTAGAATAAATGTTCTTTTCTGATGAAGATAAATTTTTTCTTTATAGAAAGTCATCGGCGGTGAATTTAATGTTTTATCATATGCGCAACGTCTCCTTATTTTTCTGGTGCGTTAAGCTTTAGGAATACTTCTCTTTTAGCTACTTTCATTATGTTTTTGCAACAGGATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTT</genome_strand>
        <mrna_strand>ACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA...........................................................................................................GTTGTTTGTGCTGTATGCGACACTGAACAACAG.............................................................................................................GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT..................................................................................................................AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG.........................................................................................................................GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437983" ref_strand="+" ref_description="SGN-E437983 [cSTA-5-B20]">
      <seq>cactgtcgaaccttctacatggaagaagacggtgacaattttgtcgttgatcaaccgccgccgccgccgaccgaaaaggagctcgatagacaagatgtcggaaagttgctttatggatgtgatcattatcggcgacgctgtaaactccgagccccttgttgcaatgaaattttcacttgccgtcactgccacaacgaggccaagaatgctttgaccaatcccaaggaacggcacgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70035" stop="68630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69736" g_stop="69627" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.836"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83">
            <donor d_prob="0.985" d_score="0.85"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69543" g_stop="69456" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="204" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68966" g_stop="68930" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="241" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E437983" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69736" e_stop="69627"/>
          <exon e_start="69543" e_stop="69456"/>
          <exon e_start="68966" e_stop="68930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAA---CCGCCGCCG-C--CCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGGGTACATAATTATGCATATACCACTTTGTGTTAATTTTCCTGTCAAAATTGTATAATGATTCATATTCTCTGTCCTTTAAATAGATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAGGTGCTTGCTGCTTTTCTTATCTTTTTTCTTATAAAAACACTACCAACAGCCACTGCTCACTTATTTTGAAGTAGAACATAGTCTATCCTTATTGGGAAAACCTAAACAGTCTTTACATATATGTTCTGTTGCTAATTAGCTGTCCCAAATAGTAAAATTTAATTAACAAGTCGCAGGTCAAAATACATCCATAATATCTATGAAAAACCAATTTCCAGTTTTCACATGCGAACACAAGTATTTTATAGGAAATACATGGACAAATACTCATTTTCTCTTTTGCTCTTAATGTGGGATTCTCTGGATCGAACATACATACTAACTTTGTAAGTCAGTTCCGCTCTTCTGTAATGGTCTGGTGCTATTGCTTCATTATAATAGTAAGAGGCCTTACTATTGTCAGTTCCATATTTTAAAACGGTTAAAGGACCTTCCTTGTTTTATAAACACTGTGTGGTTTTTACTGAAGCTTGTGTTTGTTGGAATCAGAATGCTTTGACCAATCCCAAGGAACGGCACGAACTTG</genome_strand>
        <mrna_strand>CACTGTCGAACCTTCTACATGGAAGAAGACGGTGACAATTTTGTCGTTGATCAACCGCCGCCGCCGCCGACCGAAAAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG...................................................................................ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATTTTCACTTGCCGTCACTGCCACAACGAGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275446" ref_strand="+" ref_description="SGN-E275446 [cLEN-10-H8]">
      <seq>aacggatcattttgaattcaactccaagttcactgacagaatgaggaggattaggatccctttgcctccggttgatgaaaggaaaaaagtggttgaggacgttgacaaggacagacgttatgcaattgatgcttgtattgtgcgcattatgaagagccggaaggtgcttcctcatcagcagctcgtgttggagtgtgttgagcaattgagccgcatgtttaagcctgatttcaaagcaatcaaaaagaggattgaagatcttatcactcgtgactacttggaaagagacaaagagaacccaaacttgttcaagtacttggcctgaggcaacaagctgatactgacttgtcttggcactggatggaagtgagtagagctggatttgattgttagcagcgattttttttgacctttgcctgagtaggcaacttgtgcagttgttagtatatcaccactttttttcagaaggtggcacttgaatttccctttcagtaaatatttcagccgtgcacttttttcccttgatattcctgattgtctcttaagcgccacatctttgtgtaaatcttatgctttggtgtttctatattggccttgcaacccctggattactaatgtgggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74117" stop="71985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73817" g_stop="73763" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73762" i_stop="73663" i_length="100">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73662" g_stop="73495" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="223" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73494" i_stop="72687" i_length="808">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72686" g_stop="72285" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="625" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E275446" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73817" e_stop="73763"/>
          <exon e_start="73662" e_stop="73495"/>
          <exon e_start="72686" e_stop="72285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGGGTATAGATACTGTTTAGAGCTACTTGTATTTTGCTGTGATGCTTACTTTGTTGTATGCATTGTGGACTTCTTTTCTCAATGATCTTCTTGTATCGTTCAGATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAGGTATCCACATTCACCATTTGGATTTCCTCCGTTTAGGTATTCCATCTAGGAAAGTGGACATAATTTTGGTCTGCATAATAACACGACATTCAATTTGACATGGAGGAATGTTGTTGCTTCTATACCAGACATGTCATTTTCTTTCTTGCTATCTAATTGCGTGTTACTTGAAACATCTTTTTATTTTTAAAAGTAAGTCATCAATGTCCTGGGGATCGCTTTGCTGATAGAATATCTTAGATCGTTATTGCTTGTTTTGCTTCTCCTAGTACTTGACTATTCAAAATAAAAATAAAATTGGAGAAGTGATGCTGACCGCTGACCACAGGGGTAACAGAAGGATATTGACTCCTTTGTGTCCAGCTGTCTTTTTTGTTGTATTTTGAACTTCTTCCTCTGTCTTGGTCAAAATTTTAGATGAAGAGATTTATTCAGTCCAAAATAAGTAACCATTCAAGCACTTGTCCTTTATCATAGGTATCGGGAGGAAGTACCTGAAATTTTTTCTCACCTTCTGTATATTTCCTATAGTTTGAGGAATGTGTGACCACCTCAAAACTAAGAGAGGTATCTATAGATATATAAAGTAGGATATGCAGAGTGCTGGAATTTTTGTTGAGGTGTCATCTTTGTAACCCAAACTTGCCAATATATTTCATCTTATTCCCTTGTCAAGTTTCTTCTCTGCCTTCAAATGATATTCAAAATAGTTATAGGCTCTAGTTGGAGAGATGTGTTAGCTTTGTCTATTCTAATTATTGAATTTTCTCTTGTATGTGTCGAAAAATAACAAAAGATTTCTGTGTAGCCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCACATCTTTGTGTAAATCTTATGCTTTGGTGTTTCTATATTGTCCTTGCAACCCCTGGATTACTAATGTGGGCAAT</genome_strand>
        <mrna_strand>AACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG....................................................................................................ATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCACATCTTTGTGTAAATCTTATGCTTTGGTGTTTCTATATTGGCCTTGCAACCCCTGGATTACTAATGTGGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604106" ref_strand="+" ref_description="SGN-E604106 [67297]">
      <seq>gattgagttactcagatatcaaaagtcagttaaatttggctgacgatgacttgatcagattgcttcaatccctgtcatgtgccaagtataaaattctgaccaaagagcctagcaatagaactgtttcgtcaacggatcattttgaatttaactccaagttcactgacagaatgaggaggattaggatccctttgcctccggtggatgaaaggaaaaaagtggttgaggatgttgacaaggacagacgttatgcaattgatgcttgtattgtgcgcattatgaagagccggaaggtgcttcctcatcagcagctcgtgttggagtgtgttgagcaattgagccgcatgtttaagcctgatttcaaagcaatcaaaaagaggattgaagatcttatcactcgtgactacttggaaagagacaaagagaacccaaacttgttcaagtacttggcctgaggcaacaagctgataccttggtgatattgacttctcttggcactagatggaagtgagtacagctggatttgattgttatccaaggaaatagcagcgatatttttttgacctttgcctgagtaggcaacttgtgcagttagtatatcaccactttttttcagaagttggtggcacttgaattcccctttcagtaaatacttcagccgtgcactttttttccttgatattcctgattgtcacttaaacgccacatctttgtgtaaatcttatgctttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74247" stop="72032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73947" g_stop="73763" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73762" i_stop="73663" i_length="100">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73662" g_stop="73495" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="353" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73494" i_stop="72687" i_length="808">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72686" g_stop="72332" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="732" r_length="379" r_score="0.817"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E604106" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73947" e_stop="73763"/>
          <exon e_start="73662" e_stop="73495"/>
          <exon e_start="72686" e_stop="72332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGGGTATAGATACTGTTTAGAGCTACTTGTATTTTGCTGTGATGCTTACTTTGTTGTATGCATTGTGGACTTCTTTTCTCAATGATCTTCTTGTATCGTTCAGATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAGGTATCCACATTCACCATTTGGATTTCCTCCGTTTAGGTATTCCATCTAGGAAAGTGGACATAATTTTGGTCTGCATAATAACACGACATTCAATTTGACATGGAGGAATGTTGTTGCTTCTATACCAGACATGTCATTTTCTTTCTTGCTATCTAATTGCGTGTTACTTGAAACATCTTTTTATTTTTAAAAGTAAGTCATCAATGTCCTGGGGATCGCTTTGCTGATAGAATATCTTAGATCGTTATTGCTTGTTTTGCTTCTCCTAGTACTTGACTATTCAAAATAAAAATAAAATTGGAGAAGTGATGCTGACCGCTGACCACAGGGGTAACAGAAGGATATTGACTCCTTTGTGTCCAGCTGTCTTTTTTGTTGTATTTTGAACTTCTTCCTCTGTCTTGGTCAAAATTTTAGATGAAGAGATTTATTCAGTCCAAAATAAGTAACCATTCAAGCACTTGTCCTTTATCATAGGTATCGGGAGGAAGTACCTGAAATTTTTTCTCACCTTCTGTATATTTCCTATAGTTTGAGGAATGTGTGACCACCTCAAAACTAAGAGAGGTATCTATAGATATATAAAGTAGGATATGCAGAGTGCTGGAATTTTTGTTGAGGTGTCATCTTTGTAACCCAAACTTGCCAATATATTTCATCTTATTCCCTTGTCAAGTTTCTTCTCTGCCTTCAAATGATATTCAAAATAGTTATAGGCTCTAGTTGGAGAGATGTGTTAGCTTTGTCTATTCTAATTATTGAATTTTCTCTTGTATGTGTCGAAAAATAACAAAAGATTTCTGTGTAGCCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATA-C----------TGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTG---T---------TAGCAGCGAT-TTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAA---GGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCACATCTTTGTGTAAATCTTATGCTTTGG</genome_strand>
        <mrna_strand>GATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGACGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCCAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTTAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG....................................................................................................ATCCCTTTGCCTCCGGTGGATGAAAGGAAAAAAGTGGTTGAGGATGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACCTTGGTGATATTGACTTCTCTTGGCACTAGATGGAAGTGAGTACAGCTGGATTTGATTGTTATCCAAGGAAATAGCAGCGATATTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCA---GTTAGTATATCACCACTTTTTTTCAGAAGTTGGTGGCACTTGAATTCCCCTTTCAGTAAATACTTCAGCCGTGCACTTTTTTTCCTTGATATTCCTGATTGTCACTTAAACGCCACATCTTTGTGTAAATCTTATGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552766" ref_strand="+" ref_description="SGN-E552766 [cTSB-4-P19]">
      <seq>tgatttcaaagcaatcaaaaagaggattgaagatcttatcactcgtgactacttggaaagagacaaagagaacccaaacttgttcaagtacttggcctgaggcaacaagctgatactgacttgtcttggcactggatggaagtgagtagagctggatttgattgttagcagcgattttttttgacctttgcctgagtaggcaacttgtgcagttgttagtatatcaccactttttttcagaaggtggcacttgaatttccctttcagtaaatatttcagccgtgcacttttttcccttgatattcctgattgtctcttaagcgccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72984" stop="72057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72684" g_stop="72358" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="337"/>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E552766" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72684" e_stop="72358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCAC</genome_strand>
        <mrna_strand>TGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554959" ref_strand="+" ref_description="SGN-E554959 [cTSC-5-P19]">
      <seq>tgatttcaaagcaatcaaaaagaggattgaagatcttatcactcgtgactacttggaaagagacaaagagaacccaaacttgttcaagtacttggcctgaggcaacaagctgatactgacttgtcttggcactggatggaagtgagtagagctggatttgattgttagcagcgattttttttgacctttgcctgagtaggcaacttgtgcagttgttagtatatcaccactttttttcagaaggtggcacttgaatttccctttcagtaaatatttcagccgtgcacttttttcccttgatattcctgattgtctcttaagcgccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72984" stop="72057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72684" g_stop="72358" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E554959" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72684" e_stop="72358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCAC</genome_strand>
        <mrna_strand>TGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325149" ref_strand="+" ref_description="SGN-E325149 [cTOC-13-J21]">
      <seq>aagtataaaattctgaccaaagagcctagcaatagaactgtttcgtcaacggatcattttgaattcaactccaagttcactgacagaatgaggaggattaggatccctttgcctccggttgatgaaaggaaaaaagtggttgaggacgttgacaaggacagacgttatgcaattgatgcttgtattgtgcgcattatgaagagccggaaggtgcttcctcatcagcagctcgtgttggagtgtgttgagcaattgagccgcatgtttaagcctgatttcaaagcaatcaaaaagaggattgaagatcttatcactcgtgactacttggaaagagacaaagagaacccaaacttgttcaagtacttggcctgaggcaacaagctgatactgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74164" stop="72264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73864" g_stop="73763" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73762" i_stop="73663" i_length="100">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73662" g_stop="73495" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="270" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73494" i_stop="72687" i_length="808">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72686" g_stop="72564" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="393" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E325149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73864" e_stop="73763"/>
          <exon e_start="73662" e_stop="73495"/>
          <exon e_start="72686" e_stop="72564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGGGTATAGATACTGTTTAGAGCTACTTGTATTTTGCTGTGATGCTTACTTTGTTGTATGCATTGTGGACTTCTTTTCTCAATGATCTTCTTGTATCGTTCAGATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAGGTATCCACATTCACCATTTGGATTTCCTCCGTTTAGGTATTCCATCTAGGAAAGTGGACATAATTTTGGTCTGCATAATAACACGACATTCAATTTGACATGGAGGAATGTTGTTGCTTCTATACCAGACATGTCATTTTCTTTCTTGCTATCTAATTGCGTGTTACTTGAAACATCTTTTTATTTTTAAAAGTAAGTCATCAATGTCCTGGGGATCGCTTTGCTGATAGAATATCTTAGATCGTTATTGCTTGTTTTGCTTCTCCTAGTACTTGACTATTCAAAATAAAAATAAAATTGGAGAAGTGATGCTGACCGCTGACCACAGGGGTAACAGAAGGATATTGACTCCTTTGTGTCCAGCTGTCTTTTTTGTTGTATTTTGAACTTCTTCCTCTGTCTTGGTCAAAATTTTAGATGAAGAGATTTATTCAGTCCAAAATAAGTAACCATTCAAGCACTTGTCCTTTATCATAGGTATCGGGAGGAAGTACCTGAAATTTTTTCTCACCTTCTGTATATTTCCTATAGTTTGAGGAATGTGTGACCACCTCAAAACTAAGAGAGGTATCTATAGATATATAAAGTAGGATATGCAGAGTGCTGGAATTTTTGTTGAGGTGTCATCTTTGTAACCCAAACTTGCCAATATATTTCATCTTATTCCCTTGTCAAGTTTCTTCTCTGCCTTCAAATGATATTCAAAATAGTTATAGGCTCTAGTTGGAGAGATGTGTTAGCTTTGTCTATTCTAATTATTGAATTTTCTCTTGTATGTGTCGAAAAATAACAAAAGATTTCTGTGTAGCCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACT</genome_strand>
        <mrna_strand>AAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG....................................................................................................ATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576251" ref_strand="+" ref_description="SGN-E576251 [59439]">
      <seq>tagaggctgatctgagtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattttatcagacgaaaacgaaacacaggaaattgacctggatttattcactgggtacatgcaatatcaatggcaagtttgaatcaaaaactattgaacttattgtgggaacttaccaggctgctgctctattactgtttaatgcttcagatagattgagttactcagatatcaaaagtcagttaaatttggctgacgatgacttgatcagattgcttcaatccctgtcatgtgccaagtataaaattctgaccaaagagcctagcaatagaactgtttcatcaacggatcattttgaatttaactccaagttcactgacagaatgaggaggattaggatccctttgcctccggtggatgaaaggaaaaaagtggttgaggatgttgacaaggacagacgttatgcaattgatgcttgtattgtgcgcattatgaagagccggaaggtgcttcctcatcagcagctcgtgttggagtgtgttgagcaattgagccgcatgtttaagcctgatttcaaagcaatcaaaaagaggattgaagatcttatcactcgtgactaacttggaaagagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74642" stop="72321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74348" g_stop="74317" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74209" g_stop="74066" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="176" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84">
            <donor d_prob="0.058" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73981" g_stop="73763" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="395" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73762" i_stop="73663" i_length="100">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73662" g_stop="73495" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="563" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73494" i_stop="72687" i_length="808">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72686" g_stop="72621" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="630" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E576251" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74348" e_stop="74317"/>
          <exon e_start="74209" e_stop="74066"/>
          <exon e_start="73981" e_stop="73763"/>
          <exon e_start="73662" e_stop="73495"/>
          <exon e_start="72686" e_stop="72621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAGGTGATCAGTTCGTGAAATGGTACTGCTGCAGCATCACTGTTTCTGACACCAAATATGGTTACTGATTAATGATTTCATTTTCAGGCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGGGTATAGATACTGTTTAGAGCTACTTGTATTTTGCTGTGATGCTTACTTTGTTGTATGCATTGTGGACTTCTTTTCTCAATGATCTTCTTGTATCGTTCAGATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAGGTATCCACATTCACCATTTGGATTTCCTCCGTTTAGGTATTCCATCTAGGAAAGTGGACATAATTTTGGTCTGCATAATAACACGACATTCAATTTGACATGGAGGAATGTTGTTGCTTCTATACCAGACATGTCATTTTCTTTCTTGCTATCTAATTGCGTGTTACTTGAAACATCTTTTTATTTTTAAAAGTAAGTCATCAATGTCCTGGGGATCGCTTTGCTGATAGAATATCTTAGATCGTTATTGCTTGTTTTGCTTCTCCTAGTACTTGACTATTCAAAATAAAAATAAAATTGGAGAAGTGATGCTGACCGCTGACCACAGGGGTAACAGAAGGATATTGACTCCTTTGTGTCCAGCTGTCTTTTTTGTTGTATTTTGAACTTCTTCCTCTGTCTTGGTCAAAATTTTAGATGAAGAGATTTATTCAGTCCAAAATAAGTAACCATTCAAGCACTTGTCCTTTATCATAGGTATCGGGAGGAAGTACCTGAAATTTTTTCTCACCTTCTGTATATTTCCTATAGTTTGAGGAATGTGTGACCACCTCAAAACTAAGAGAGGTATCTATAGATATATAAAGTAGGATATGCAGAGTGCTGGAATTTTTGTTGAGGTGTCATCTTTGTAACCCAAACTTGCCAATATATTTCATCTTATTCCCTTGTCAAGTTTCTTCTCTGCCTTCAAATGATATTCAAAATAGTTATAGGCTCTAGTTGGAGAGATGTGTTAGCTTTGTCTATTCTAATTATTGAATTTTCTCTTGTATGTGTCGAAAAATAACAAAAGATTTCTGTGTAGCCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACT-ACTTGGAAAGAGAC</genome_strand>
        <mrna_strand>TAGAGGCTGATCTGAGTCTCCCTGTGGAAATG...........................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG....................................................................................GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGACGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCCAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCATCAACGGATCATTTTGAATTTAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG....................................................................................................ATCCCTTTGCCTCCGGTGGATGAAAGGAAAAAAGTGGTTGAGGATGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTAACTTGGAAAGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554480" ref_strand="+" ref_description="SGN-E554480 [cTSC-4-H1]">
      <seq>aacaaagttaaagcagcagtgtggtggacagtttacgtcaaagatggagggaatggtgacggacttgactctggcgaaggaaaatcagagtcactttcaggaatatctcagtaacaactcggcagctaatcccggaattgatttgactgtcacagttcttacaactggcttttggcctagttataaatcttctgatctgagtctccctgtgaaaatggtgaagtgtgtagaagtcttcaaggaattttatcagacgaaaacgaaacacaggaaattgacctggatttattcactgggtacatgcaatatcaatggcaagtttgaatcaaaaactattgaacttattgtgggaacttaccaggctgctgctctattactgtttaatgcttcagatagattgagttactcagatatcaaaagtcagttaaatttggctgatgatgacttgatcagattgcttcaatccctgtcatgtgctaagtataaaattctgaccaaagagcctagcaatagaactgtttcgtcaacggatcattttgaattcaactccaagttcactgacagaatgaggaggattaggatccctttgcctccggttgatgaaaggaaaaaagtggttgaggacgttgacaaggacagacgttatgcaattgatgcttgtattgtgcgcattatgaagagccggaaggtgcttcctcatcagcagctcgtgttggagtgtgttgagcaattgagccgcatgtttaagcctgatttcaaagcaatcaaaaagaggattgaagatcttatcactcgtgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74918" stop="72333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74618" g_stop="74564" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74478" g_stop="74317" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="217" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74209" g_stop="74066" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="361" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84">
            <donor d_prob="0.058" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73981" g_stop="73763" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="580" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73762" i_stop="73663" i_length="100">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73662" g_stop="73495" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="748" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73494" i_stop="72687" i_length="808">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72686" g_stop="72633" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="802" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E554480" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74618" e_stop="74564"/>
          <exon e_start="74478" e_stop="74317"/>
          <exon e_start="74209" e_stop="74066"/>
          <exon e_start="73981" e_stop="73763"/>
          <exon e_start="73662" e_stop="73495"/>
          <exon e_start="72686" e_stop="72633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGAGGAGAGTGTATAGTACTGCTAATTTTATCTTTCCCGTTCAAATTGTCTTGTCAACACTTACTGTTTGAAATAACAAAACAGGTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAGGTGATCAGTTCGTGAAATGGTACTGCTGCAGCATCACTGTTTCTGACACCAAATATGGTTACTGATTAATGATTTCATTTTCAGGCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGGGTATAGATACTGTTTAGAGCTACTTGTATTTTGCTGTGATGCTTACTTTGTTGTATGCATTGTGGACTTCTTTTCTCAATGATCTTCTTGTATCGTTCAGATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAGGTATCCACATTCACCATTTGGATTTCCTCCGTTTAGGTATTCCATCTAGGAAAGTGGACATAATTTTGGTCTGCATAATAACACGACATTCAATTTGACATGGAGGAATGTTGTTGCTTCTATACCAGACATGTCATTTTCTTTCTTGCTATCTAATTGCGTGTTACTTGAAACATCTTTTTATTTTTAAAAGTAAGTCATCAATGTCCTGGGGATCGCTTTGCTGATAGAATATCTTAGATCGTTATTGCTTGTTTTGCTTCTCCTAGTACTTGACTATTCAAAATAAAAATAAAATTGGAGAAGTGATGCTGACCGCTGACCACAGGGGTAACAGAAGGATATTGACTCCTTTGTGTCCAGCTGTCTTTTTTGTTGTATTTTGAACTTCTTCCTCTGTCTTGGTCAAAATTTTAGATGAAGAGATTTATTCAGTCCAAAATAAGTAACCATTCAAGCACTTGTCCTTTATCATAGGTATCGGGAGGAAGTACCTGAAATTTTTTCTCACCTTCTGTATATTTCCTATAGTTTGAGGAATGTGTGACCACCTCAAAACTAAGAGAGGTATCTATAGATATATAAAGTAGGATATGCAGAGTGCTGGAATTTTTGTTGAGGTGTCATCTTTGTAACCCAAACTTGCCAATATATTTCATCTTATTCCCTTGTCAAGTTTCTTCTCTGCCTTCAAATGATATTCAAAATAGTTATAGGCTCTAGTTGGAGAGATGTGTTAGCTTTGTCTATTCTAATTATTGAATTTTCTCTTGTATGTGTCGAAAAATAACAAAAGATTTCTGTGTAGCCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTAC</genome_strand>
        <mrna_strand>AACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG.....................................................................................GTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGAAAATG...........................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG....................................................................................GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG....................................................................................................ATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245623" ref_strand="+" ref_description="SGN-E245623 [cLEF-43-N3]">
      <seq>tctggcgaaggaaaatcagagtcactttcaagaatatctcagtaacaactcggcagctaatcccggaattgatttgactgtcacagttcttacaactggcttttggcctagttataaatcttctgatctgagtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattttatcagacgaaaacgaaacacaggaaattgacctggatttattcactgggtacatgcaatatcaatggcaagtttgaatcaaaaactattgaacttattgtgggaacttaccaggctgctgctctattactgtttaatgcttcagatagattgagttactcagatatcaaaagtcagttaaatttggctgatgatgacttgatcagattgcttcaatccctgtcatgtgctaagtataaaattctgaccaaagagcctagcaatagaactgtttcgtcaacggatcattttgaattcaactccaagttcactgacagaatgaggaggattaggatccctttgcctccggttgatgaaaggaaaaaagtggttgaggacgttgacaaggacagacgttatgcaattgatgcttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74764" stop="73280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74464" g_stop="74317" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74209" g_stop="74066" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="292" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84">
            <donor d_prob="0.058" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73981" g_stop="73763" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="511" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73762" i_stop="73663" i_length="100">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73662" g_stop="73580" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="594" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E245623" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74464" e_stop="74317"/>
          <exon e_start="74209" e_stop="74066"/>
          <exon e_start="73981" e_stop="73763"/>
          <exon e_start="73662" e_stop="73580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAGGTGATCAGTTCGTGAAATGGTACTGCTGCAGCATCACTGTTTCTGACACCAAATATGGTTACTGATTAATGATTTCATTTTCAGGCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGGGTATAGATACTGTTTAGAGCTACTTGTATTTTGCTGTGATGCTTACTTTGTTGTATGCATTGTGGACTTCTTTTCTCAATGATCTTCTTGTATCGTTCAGATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTAT</genome_strand>
        <mrna_strand>TCTGGCGAAGGAAAATCAGAGTCACTTTCAAGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG...........................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG....................................................................................GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG....................................................................................................ATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473989" ref_strand="+" ref_description="SGN-E473989 [cSTB-34-K8]">
      <seq>ggaatggttacggacttgactttggcgaaggaaaatcagagtcactttcaggaatatctcagtaacaactcggcagctaatcctggaattgatttgactgtcacagttcttacaactggcttttggcctagttataaatcttctgatctgagtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattttaccagacgaaaacgaaacacaggaaattgacctggatttattcactgggtacatgcaatatcaatggcaagtttgaatcaaaaactattgaacttattgtgggaacctaccaggctgctgctctattactgtttaatgcttcagatagattgagttactcagatatcaaaagtcagttaaatttggctgacgatgacttgatcagattgcttcaatccctgtcatgtgccaagtataaaattctgaccaaagagcctagcaatagaactgtttcgtcaacggatcattttgaatttaactccaagttcactgacagaatgaggaggattaggatccctttgcctccggtggatgaaaggaaaaaagtggttgaggatgttgacaaggacagacgttatgcaattgatgcttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74779" stop="73281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74569" g_stop="74564" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74478" g_stop="74317" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="168" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74209" g_stop="74066" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="312" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84">
            <donor d_prob="0.058" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73981" g_stop="73763" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="531" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73762" i_stop="73663" i_length="100">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73662" g_stop="73581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="613" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E473989" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74569" e_stop="74564"/>
          <exon e_start="74478" e_stop="74317"/>
          <exon e_start="74209" e_stop="74066"/>
          <exon e_start="73981" e_stop="73763"/>
          <exon e_start="73662" e_stop="73581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGGTGAGGAGAGTGTATAGTACTGCTAATTTTATCTTTCCCGTTCAAATTGTCTTGTCAACACTTACTGTTTGAAATAACAAAACAGGTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAGGTGATCAGTTCGTGAAATGGTACTGCTGCAGCATCACTGTTTCTGACACCAAATATGGTTACTGATTAATGATTTCATTTTCAGGCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGGGTATAGATACTGTTTAGAGCTACTTGTATTTTGCTGTGATGCTTACTTTGTTGTATGCATTGTGGACTTCTTTTCTCAATGATCTTCTTGTATCGTTCAGATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTA</genome_strand>
        <mrna_strand>GGAATG.....................................................................................GTTACGGACTTGACTTTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCTGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG...........................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTACCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACCTACCAG....................................................................................GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGACGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCCAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTTAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG....................................................................................................ATCCCTTTGCCTCCGGTGGATGAAAGGAAAAAAGTGGTTGAGGATGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709828" ref_strand="+" ref_description="SGN-E709828 [FA53BD05]">
      <seq>cccttatatcagtgacaaggacctttttgctgagttctacacgaagaagctttctcggcgactgctttttgataaaagtgccaatgatgaccatgaaaggcttatcttaacaaagttaaagcagcagtgtggtggacagtttacgtcaaagatggagggaatggtgacggacttgactctggcgaaggaaaatcagagtcactttcaggaatatctcagtaacaactcggcagctaatcccggaattgatttgactgtcacagttcttacaactggcttttggcctagttataaatcttctgatctgagtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattttatcagacgaaaacgaaacacaggaaattgacctggatttattcactgggtacatgcaatatcaatggcaagtttgaatcaaaaactattgaacttattgtgggaacttaccaggctgctgctctattactgtttaatgcttcagatagattgagttactcagatatcaaaagtcagttaaatttggctgatgatgacttgatcagattgcttcaatccctgtcatgtgctaagtataaaattctgaccaaagagcctagcaatagaactgtttcgtcaacggatcattttgaattcaactccaagttcactgacagaatgaagaggattaagatccctttgcctcccggttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75025" stop="73342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74821" g_stop="74780" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95">
            <donor d_prob="0.951" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74684" g_stop="74564" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="163" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74478" g_stop="74317" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="325" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74209" g_stop="74066" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="469" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84">
            <donor d_prob="0.058" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73981" g_stop="73763" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="688" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73762" i_stop="73663" i_length="100">
            <donor d_prob="0.928" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73662" g_stop="73642" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="710" r_length="22" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E709828" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74821" e_stop="74780"/>
          <exon e_start="74684" e_stop="74564"/>
          <exon e_start="74478" e_stop="74317"/>
          <exon e_start="74209" e_stop="74066"/>
          <exon e_start="73981" e_stop="73763"/>
          <exon e_start="73662" e_stop="73642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAGGTCGGAAGCTACATCAAGTTTTTTTTTGATCCAGTAACTAGTTTCTTGTTACATCTCTAACCATTGAATATGTATCCGTCTTCATAATTTTATAGGAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGAGGAGAGTGTATAGTACTGCTAATTTTATCTTTCCCGTTCAAATTGTCTTGTCAACACTTACTGTTTGAAATAACAAAACAGGTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAGGTGATCAGTTCGTGAAATGGTACTGCTGCAGCATCACTGTTTCTGACACCAAATATGGTTACTGATTAATGATTTCATTTTCAGGCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGGGTATAGATACTGTTTAGAGCTACTTGTATTTTGCTGTGATGCTTACTTTGTTGTATGCATTGTGGACTTCTTTTCTCAATGATCTTCTTGTATCGTTCAGATCCCTTTGCCT-CCGGTTGAT</genome_strand>
        <mrna_strand>CCCTTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAC...............................................................................................GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG.....................................................................................GTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG...........................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG....................................................................................GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAAGAGGATTAAG....................................................................................................ATCCCTTTGCCTCCCGGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588807" ref_strand="+" ref_description="SGN-E588807 [42367]">
      <seq>cttgcctcttattgtgataatatccttaagaagggcgggagtgagaaactcagtgatgatgctattgaggagacattagataaggtggtcaagcttcttgcgtatatcagtgacaaagacctttttgcggagttctacaggaagaagctttctcggcgactgctttttgataaaagtgccaatgatgaccatgaaaggcttatcttaacaaagttaaagcagcagtgtggtggacagtttacgtcaaagatggagggaatggttacggacttgactttggcgaaggaaaatcagagtcactttcaggaatatctcagtaacaactcggcagctaatcctggaattgatttgactgtcacagttcttacaactggcttttggcctagttataaatcttctgatctgagtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattttatcagacgaaaacgaaacacaggaaattgacctggatttattcactgggtacatgcaatatcaatggcaagtttgaatcaaaaactattgaacttattgtgggaacttaccaggctgctgctctattactgtttaatgcttcagatagattgagttactcagatatcaaaagtcagttaaatttggctgacgatgacttgatcagattgcttcaatccctgtcatgtgccaagtataaaattctgaccaaaagagcctagcaatagaaccgttctcatcaacggatcatttcgaatttaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75305" stop="73494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75005" g_stop="74922" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74921" i_stop="74836" i_length="86">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74835" g_stop="74780" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="140" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74684" g_stop="74564" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="261" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74478" g_stop="74317" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="423" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74209" g_stop="74066" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="567" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84">
            <donor d_prob="0.058" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73981" g_stop="73794" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="757" r_length="190" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E588807" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75005" e_stop="74922"/>
          <exon e_start="74835" e_stop="74780"/>
          <exon e_start="74684" e_stop="74564"/>
          <exon e_start="74478" e_stop="74317"/>
          <exon e_start="74209" e_stop="74066"/>
          <exon e_start="73981" e_stop="73794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAGGTAGCACTAACCCTATATCCAGCTTCACTTTCTGGTGGTCACTCGATTTTTCAGGATGACTTCATAATTGTTTATATTTCATATAGGTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAGGTCGGAAGCTACATCAAGTTTTTTTTTGATCCAGTAACTAGTTTCTTGTTACATCTCTAACCATTGAATATGTATCCGTCTTCATAATTTTATAGGAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGAGGAGAGTGTATAGTACTGCTAATTTTATCTTTCCCGTTCAAATTGTCTTGTCAACACTTACTGTTTGAAATAACAAAACAGGTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAGGTGATCAGTTCGTGAAATGGTACTGCTGCAGCATCACTGTTTCTGACACCAAATATGGTTACTGATTAATGATTTCATTTTCAGGCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACC-AAAGAGCCTAGCAATAGAACTGTT-TCGTCAACGGATCATTTTGAATTCAACTC</genome_strand>
        <mrna_strand>CTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG......................................................................................GTGGTCAAGCTTCTTGCGTATATCAGTGACAAAGACCTTTTTGCGGAGTTCTACAG...............................................................................................GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG.....................................................................................GTTACGGACTTGACTTTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCTGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG...........................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG....................................................................................GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGACGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCCAAGTATAAAATTCTGACCAAAAGAGCCTAGCAATAGAACCGTTCTCATCAACGGATCATTTCGAATTTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201552" ref_strand="+" ref_description="SGN-E201552 [cLEC-4-J18]">
      <seq>catgaaaggcttatcttaacaaagttaaagcagcagtgtggtggacagtttacgtcaaagatggagggaatggtgacggacttgactctggcgaaggaaaatcagagtcactttcaggaatatctcagtaacaactcggcagctaatcccggaattgatttgactgtcacagttcttacaactggcttttggcctagttataaatcttctgatctgagtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattttatcagacgaaaacgaaacacaggaaattgacctggatttattcactgggtacatgcaatatcaatggcaagtttgaatcaaaaactattgaacttattgtgggaacttaccaggctgctgctctattactgtttaatgcttcagatagattgagttactcagatatcaaaagtcagttaaatttggctgatgatgacttgatcagattgcttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74935" stop="73579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74635" g_stop="74564" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74478" g_stop="74317" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="234" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74209" g_stop="74066" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="378" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84">
            <donor d_prob="0.058" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73981" g_stop="73879" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="481" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E201552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74635" e_stop="74564"/>
          <exon e_start="74478" e_stop="74317"/>
          <exon e_start="74209" e_stop="74066"/>
          <exon e_start="73981" e_stop="73879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGAGGAGAGTGTATAGTACTGCTAATTTTATCTTTCCCGTTCAAATTGTCTTGTCAACACTTACTGTTTGAAATAACAAAACAGGTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAGGTGATCAGTTCGTGAAATGGTACTGCTGCAGCATCACTGTTTCTGACACCAAATATGGTTACTGATTAATGATTTCATTTTCAGGCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAAT</genome_strand>
        <mrna_strand>CATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG.....................................................................................GTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG...........................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG....................................................................................GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558667" ref_strand="+" ref_description="SGN-E558667 [18043]">
      <seq>gtggtcaagcttcttgcgtatatcagtgacaaagacctttttgcggagttctacaggaagaagctttctcggcgactgctttttgataaaagtgccaatgatgaccatgaaaggcttatcttaacaaagttaaagcagcagtgtggtggacagtttacgtcaaagatggagggaatggttacggacttgactttggcgaaggaaaatcagagtcactttcaggaatatctcagtaacaactcggcagctaatcctgggaattgatttgactgtcacagttcttacaactggcttttggcctagttataaatcttctgatctgagtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattttaccagacgaaaacgaaacacaggaaattgacctggatttattcactgggtacatgcaatatcaatggcaagtttgaatcaaaaactattgaaacttattgtgggaacctaccaaggctgcgtggctctattaacttgttttaatgcttcaagatagattgagttactcaagatatcaacaagttcagttaaaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75135" stop="73611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74835" g_stop="74780" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74684" g_stop="74564" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="177" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74478" g_stop="74317" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="340" r_length="163" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74209" g_stop="74066" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="486" r_length="146" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84">
            <donor d_prob="0.058" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73981" g_stop="73909" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="569" r_length="83" r_score="0.712"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E558667" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74835" e_stop="74780"/>
          <exon e_start="74684" e_stop="74564"/>
          <exon e_start="74478" e_stop="74317"/>
          <exon e_start="74209" e_stop="74066"/>
          <exon e_start="73981" e_stop="73909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAGGTCGGAAGCTACATCAAGTTTTTTTTTGATCCAGTAACTAGTTTCTTGTTACATCTCTAACCATTGAATATGTATCCGTCTTCATAATTTTATAGGAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGAGGAGAGTGTATAGTACTGCTAATTTTATCTTTCCCGTTCAAATTGTCTTGTCAACACTTACTGTTTGAAATAACAAAACAGGTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCC-CGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTG-AACTTATTGTGGGAACTTACC-AGGTGATCAGTTCGTGAAATGGTACTGCTGCAGCATCACTGTTTCTGACACCAAATATGGTTACTGATTAATGATTTCATTTTCAGGCTGC-T-GCTCTATT-AC-TG-TTTAATGCTTC-AGATAGATTGAGTTACTC-AGATATCAA-AAG-TCAGTT-AAATTTGG</genome_strand>
        <mrna_strand>GTGGTCAAGCTTCTTGCGTATATCAGTGACAAAGACCTTTTTGCGGAGTTCTACAG...............................................................................................GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG.....................................................................................GTTACGGACTTGACTTTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCTGGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG...........................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTACCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAAACTTATTGTGGGAACCTACCAAG....................................................................................GCTGCGTGGCTCTATTAACTTGTTTTAATGCTTCAAGATAGATTGAGTTACTCAAGATATCAACAAGTTCAGTTAAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459409" ref_strand="+" ref_description="SGN-E459409 [cPRO-27-D22]">
      <seq>ccgaagactcagcaagtaacaaggctgaaagttccagtggttcacaggagcaggtctttgttaggaaggttattgagctgcatgacaaatatatggcatatgtgaccgacagttttgcaaataactctctctttcacaaggctttgaaagaggcatttgaggtcttctgtaacaaaattgttgctggctgttctagtgcagagctccttgcctcttattgtgataatatccttaagaagggcgggagtgagaaactcagtgatgatgctattgaggagacattagataaggtggtcaagcttcttgcgtatatcagtgacaaagacctttttgcggagttctacaggaagaagctttctcggcgactgctttttgataaaagtgccaatgatgaccatgaaaggcttatcttaacaaagttaaagcagcagtgtggtggacagtttacgtcaaagatggagggaatggttacggacttgactttggcgaaggaaaatcagagtcactttcaggaatatctcagtaacaactcggcagctaatcctggaattgatttgactgtcacagttcttacaactggcttttggcctagttataaatcttctgatctgagtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattttaccagacgaaaacgaaacacaggaaattgacctggatttattcactgggtacatgcaatatcaatggcaagtttgaatcaaaactattgaacttattgtgggaaccntacaggctgctgctctattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76057" stop="73666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75757" g_stop="75735" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75734" i_stop="75376" i_length="359">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75375" g_stop="75346" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="53" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75253" g_stop="75167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="140" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75071" g_stop="74922" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="290" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74921" i_stop="74836" i_length="86">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74835" g_stop="74780" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="346" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74684" g_stop="74564" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="467" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74478" g_stop="74317" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="629" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74209" g_stop="74066" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="772" r_length="143" r_score="0.958"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84">
            <donor d_prob="0.058" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="73981" g_stop="73966" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="788" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E459409" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75757" e_stop="75735"/>
          <exon e_start="75375" e_stop="75346"/>
          <exon e_start="75253" e_stop="75167"/>
          <exon e_start="75071" e_stop="74922"/>
          <exon e_start="74835" e_stop="74780"/>
          <exon e_start="74684" e_stop="74564"/>
          <exon e_start="74478" e_stop="74317"/>
          <exon e_start="74209" e_stop="74066"/>
          <exon e_start="73981" e_stop="73966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGACTCAGCAAGTAACAAGGTCTGTTGACTGAACATGCCATGCTTCATTTGGCAATATGTTTTTTGGCCCCTTTTTCTTATTTTAATATCCATGCTTCTTGAACTAGTAGAGAAAAAGTTTAGGTGTATGGGTAGGAAAAAACAAGGGAAGTTTAAGGGGAGAATGCATAGAGCAACCTATCTTCGAGAACAATCAAGTAATCTAGAAAAAAAGGGAGTTCAAGACTTTGAATAGATTAAATAGCATTATCAGAAATACAAAGATATATGTGAAATTGCATCCACATGCTGTTCTTACGATCTGCGAGATTGTTTTTCCTTTTGGTAGTAGCTGATTTCAGTGCATTTTGAAGTACTGATATTTATGTAATTCTACAGGCTGAAAGTTCCAGTGGGTCACAGGAGCAGGTAAATCCACTTATCTGAATTTCTAGTCAAGTAGAATTTTTAAGTGTAATAGCTCAGGAGATGGCTCAATTGTGTTCGATCTGTTTCCTTAGGTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAGGTATATCCAGGTGTTCACAGTTGTGTGGTTATTCATTTTTACCTTGAATAATTTGAGCTTTTATTTCTGATGTCTTAACTTCTGAACTTTTGTAGGCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAGGTAGCACTAACCCTATATCCAGCTTCACTTTCTGGTGGTCACTCGATTTTTCAGGATGACTTCATAATTGTTTATATTTCATATAGGTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAGGTCGGAAGCTACATCAAGTTTTTTTTTGATCCAGTAACTAGTTTCTTGTTACATCTCTAACCATTGAATATGTATCCGTCTTCATAATTTTATAGGAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGAGGAGAGTGTATAGTACTGCTAATTTTATCTTTCCCGTTCAAATTGTCTTGTCAACACTTACTGTTTGAAATAACAAAACAGGTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAGGTGATCAGTTCGTGAAATGGTACTGCTGCAGCATCACTGTTTCTGACACCAAATATGGTTACTGATTAATGATTTCATTTTCAGGCTGCTGCTCTATTAC</genome_strand>
        <mrna_strand>CCGAAGACTCAGCAAGTAACAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGAAAGTTCCAGTGGTTCACAGGAGCAG............................................................................................GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG...............................................................................................GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAGCTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG......................................................................................GTGGTCAAGCTTCTTGCGTATATCAGTGACAAAGACCTTTTTGCGGAGTTCTACAG...............................................................................................GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG.....................................................................................GTTACGGACTTGACTTTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCTGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG...........................................................................................................GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTACCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATC-AAAACTATTGAACTTATTGTGGGAACCNTACAG....................................................................................GCTGCTGCTCTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698534" ref_strand="+" ref_description="SGN-E698534 [FA06CG08]">
      <seq>atatgtgaccgacagttttgcaaataactctctctttcacaaggctttgaaagaggcatttgaggtcttctgtaacaaaattgttgctggctgttctagtgcagaactccttgcctcttattgtgataatatccttaagaagggcgggagtgagaaactcagtgatgatgctattgaggagacattagataaggtggtgaagcttcttgcgtatatcagtgacaaggacctttttgctgagttctacaggaagaagctttctcggcgactgctttttgataaaagtgccaatgatgaccatgaaaggcttatcttaacaaagttaaagcagcagtgtggtggacagtttacgtcaaagatggagggaatggtgacggacttgactctggcgaaggaaaatcagagtcactttcaggaatatctcagtaacaactcggcagctaatcccggaattgatttgactgtcacagttcttacaactggcttttggcctagttataaatcttctgatctgagtctccctgtggaaatggtgaagtgtgtacaagtcttcccggaattttatcacacgaaaaccaaaccacaggaaattgacctggatttattcactgggtacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75509" stop="73824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75209" g_stop="75167" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75071" g_stop="74922" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="193" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74921" i_stop="74836" i_length="86">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74835" g_stop="74780" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="249" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74684" g_stop="74564" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="370" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74478" g_stop="74317" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="532" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74209" g_stop="74124" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="619" r_length="87" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E698534" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75209" e_stop="75167"/>
          <exon e_start="75071" e_stop="74922"/>
          <exon e_start="74835" e_stop="74780"/>
          <exon e_start="74684" e_stop="74564"/>
          <exon e_start="74478" e_stop="74317"/>
          <exon e_start="74209" e_stop="74124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAGGTATATCCAGGTGTTCACAGTTGTGTGGTTATTCATTTTTACCTTGAATAATTTGAGCTTTTATTTCTGATGTCTTAACTTCTGAACTTTTGTAGGCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAGGTAGCACTAACCCTATATCCAGCTTCACTTTCTGGTGGTCACTCGATTTTTCAGGATGACTTCATAATTGTTTATATTTCATATAGGTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAGGTCGGAAGCTACATCAAGTTTTTTTTTGATCCAGTAACTAGTTTCTTGTTACATCTCTAACCATTGAATATGTATCCGTCTTCATAATTTTATAGGAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGAGGAGAGTGTATAGTACTGCTAATTTTATCTTTCCCGTTCAAATTGTCTTGTCAACACTTACTGTTTGAAATAACAAAACAGGTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATGGTGAGATCTGCTTCTCATCTGATATAATGATTCAATTTCTGCTGCTTGGTTTGATCTTTCCTTTTTGTATTTTTTTATGGGTGTTTACTCCTCTGTTGGTATCTCAGGTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAA-CACAGGAAATTGACCTGGATTTATTCACTGGGTACATG</genome_strand>
        <mrna_strand>ATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG...............................................................................................GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG......................................................................................GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG...............................................................................................GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG.....................................................................................GTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG...........................................................................................................GTGAAGTGTGTACAAGTCTTCCCGGAATTTTATCACACGAAAACCAAACCACAGGAAATTGACCTGGATTTATTCACTGGGTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344515" ref_strand="+" ref_description="SGN-E344515 [cTOF-14-B16]">
      <seq>aattattggttgtatataccaatcaattgcttgagaaggagcattctggatgccgagctttgcttagagatgataaggtagaggatttatctcgaatgtacaggctattccacaggatccctaaaggtttggaaccagttgcaaatatgtttaagcagcatgtcactgctgaaggcatggtattggtgcaacaggccgaagactcagcaagtaacaaggctgaaagttccagtgggtcacaggagcaggtctttgttaggaaggttattgagctgcatgacaaatatatggcatatgtgaccgacagttttgcaaataactctctctttcacaaggctttgaaagaggcatttgaggtcttctgtaacaaaattgttgctggctgttctagtgcagaactccttgcctcttattgtgataatatccttaagaagggcgggagtgagaaactcagtgatgatgctattgaggagacattagataaggtggtgaagcttcttgcgtatatcagtgacaaggacctttttgctgagttctacaggaagaagctttctcggcgactgctttttgataaaagtgccaatgatgaccatgaaaggcttatcttaacaaagttaaagcagcagtgtggtggacagtttacgtcaaagatggagggaatggtgacggacttgactctggcgaaagaaaatcagagtcactttcagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76456" stop="74132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76156" g_stop="76080" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76079" i_stop="75972" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75971" g_stop="75891" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="158" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75890" i_stop="75795" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75794" g_stop="75735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="218" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75734" i_stop="75376" i_length="359">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75375" g_stop="75346" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="248" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75253" g_stop="75167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="335" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75071" g_stop="74922" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="485" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74921" i_stop="74836" i_length="86">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74835" g_stop="74780" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="541" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74684" g_stop="74564" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="662" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74478" g_stop="74432" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="709" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E344515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76156" e_stop="76080"/>
          <exon e_start="75971" e_stop="75891"/>
          <exon e_start="75794" e_stop="75735"/>
          <exon e_start="75375" e_stop="75346"/>
          <exon e_start="75253" e_stop="75167"/>
          <exon e_start="75071" e_stop="74922"/>
          <exon e_start="74835" e_stop="74780"/>
          <exon e_start="74684" e_stop="74564"/>
          <exon e_start="74478" e_stop="74432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATGTCAGGTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAGGTATGGTCTTCTATTTAATTGTTGTGCAACTACAGGGTTTTTGTTGAGTTCTTTTTTTTGGTGGTTAAATACTTTGTTATGGTACATATTTTGCAGCATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAGGTCTGTTGACTGAACATGCCATGCTTCATTTGGCAATATGTTTTTTGGCCCCTTTTTCTTATTTTAATATCCATGCTTCTTGAACTAGTAGAGAAAAAGTTTAGGTGTATGGGTAGGAAAAAACAAGGGAAGTTTAAGGGGAGAATGCATAGAGCAACCTATCTTCGAGAACAATCAAGTAATCTAGAAAAAAAGGGAGTTCAAGACTTTGAATAGATTAAATAGCATTATCAGAAATACAAAGATATATGTGAAATTGCATCCACATGCTGTTCTTACGATCTGCGAGATTGTTTTTCCTTTTGGTAGTAGCTGATTTCAGTGCATTTTGAAGTACTGATATTTATGTAATTCTACAGGCTGAAAGTTCCAGTGGGTCACAGGAGCAGGTAAATCCACTTATCTGAATTTCTAGTCAAGTAGAATTTTTAAGTGTAATAGCTCAGGAGATGGCTCAATTGTGTTCGATCTGTTTCCTTAGGTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAGGTATATCCAGGTGTTCACAGTTGTGTGGTTATTCATTTTTACCTTGAATAATTTGAGCTTTTATTTCTGATGTCTTAACTTCTGAACTTTTGTAGGCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAGGTAGCACTAACCCTATATCCAGCTTCACTTTCTGGTGGTCACTCGATTTTTCAGGATGACTTCATAATTGTTTATATTTCATATAGGTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAGGTCGGAAGCTACATCAAGTTTTTTTTTGATCCAGTAACTAGTTTCTTGTTACATCTCTAACCATTGAATATGTATCCGTCTTCATAATTTTATAGGAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGAGGAGAGTGTATAGTACTGCTAATTTTATCTTTCCCGTTCAAATTGTCTTGTCAACACTTACTGTTTGAAATAACAAAACAGGTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGA</genome_strand>
        <mrna_strand>AATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG............................................................................................................GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG................................................................................................CATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGAAAGTTCCAGTGGGTCACAGGAGCAG............................................................................................GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG...............................................................................................GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG......................................................................................GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG...............................................................................................GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG.....................................................................................GTGACGGACTTGACTCTGGCGAAAGAAAATCAGAGTCACTTTCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283656" ref_strand="+" ref_description="SGN-E283656 [cLES-1-H5]">
      <seq>gaaggttattgagctgcatgacaaatatatggcatatgtgaccgacagttttgcaaataactctctctttcacaaggctttgaaagaggcatttgaggtcttctgtaacaaaattgttgctggctgttctagtgcagaactccttgcctcttattgtgataatatccttaagaagggcgggagtgagaaactcagtgatgatgctattgaggagacattagataaggtggtgaagcttcttgcgtatatcagtgacaaggacctttttgctgagttctacaggaagaagctttctcggcgactgctttttgataaaagtgccaatgatgaccatgaaaggcttatcttaacaaagttaaagcagcagtgtggtggacagtttacgtcaaagatggagggaatggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75542" stop="74260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75242" g_stop="75167" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75071" g_stop="74922" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="226" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74921" i_stop="74836" i_length="86">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74835" g_stop="74780" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="282" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74684" g_stop="74560" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="407" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E283656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75242" e_stop="75167"/>
          <exon e_start="75071" e_stop="74922"/>
          <exon e_start="74835" e_stop="74780"/>
          <exon e_start="74684" e_stop="74560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAGGTATATCCAGGTGTTCACAGTTGTGTGGTTATTCATTTTTACCTTGAATAATTTGAGCTTTTATTTCTGATGTCTTAACTTCTGAACTTTTGTAGGCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAGGTAGCACTAACCCTATATCCAGCTTCACTTTCTGGTGGTCACTCGATTTTTCAGGATGACTTCATAATTGTTTATATTTCATATAGGTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAGGTCGGAAGCTACATCAAGTTTTTTTTTGATCCAGTAACTAGTTTCTTGTTACATCTCTAACCATTGAATATGTATCCGTCTTCATAATTTTATAGGAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGA</genome_strand>
        <mrna_strand>GAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG...............................................................................................GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG......................................................................................GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG...............................................................................................GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209752" ref_strand="+" ref_description="SGN-E209752 [cLEC-52-M2]">
      <seq>ttggaaccagttgcaaatatgtttaagcagcatgtcactgctgaaggcatggtattggtgcaacaggccgaagactcagcaagtaacaaggctgaaagttccagtgggtcacaggagcaggtctttgttaggaaggttattgagctgcatgacaaatatatggcatatgtgaccgacagttttgcaaataactctctctttcacaaggctttgaaagaggcatttgaggtcttctgtaacaaaattgttgctggctgttctagtgcagaactccttgcctcttattgtgataatatccttaagaagggcgggagtgagaaactcagtgatgatgctattgaggagacattagataaggtggtgaagcttcttgcgtatatcagtgacaaggacctttttgctgagttctacaggaagaagctttctcggcgactgctttttgataaaagtgccaatgatgaccatgaaaggctttatcttaacaaagttaaagccgcagtgtggtggacagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76220" stop="74284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75920" g_stop="75891" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75890" i_stop="75795" i_length="96">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75794" g_stop="75735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="90" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75734" i_stop="75376" i_length="359">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75375" g_stop="75346" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="120" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75253" g_stop="75167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="207" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75071" g_stop="74922" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="357" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74921" i_stop="74836" i_length="86">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74835" g_stop="74780" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="413" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74684" g_stop="74584" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="515" r_length="102" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E209752" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75920" e_stop="75891"/>
          <exon e_start="75794" e_stop="75735"/>
          <exon e_start="75375" e_stop="75346"/>
          <exon e_start="75253" e_stop="75167"/>
          <exon e_start="75071" e_stop="74922"/>
          <exon e_start="74835" e_stop="74780"/>
          <exon e_start="74684" e_stop="74584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAACCAGTTGCAAATATGTTTAAGCAGGTATGGTCTTCTATTTAATTGTTGTGCAACTACAGGGTTTTTGTTGAGTTCTTTTTTTTGGTGGTTAAATACTTTGTTATGGTACATATTTTGCAGCATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAGGTCTGTTGACTGAACATGCCATGCTTCATTTGGCAATATGTTTTTTGGCCCCTTTTTCTTATTTTAATATCCATGCTTCTTGAACTAGTAGAGAAAAAGTTTAGGTGTATGGGTAGGAAAAAACAAGGGAAGTTTAAGGGGAGAATGCATAGAGCAACCTATCTTCGAGAACAATCAAGTAATCTAGAAAAAAAGGGAGTTCAAGACTTTGAATAGATTAAATAGCATTATCAGAAATACAAAGATATATGTGAAATTGCATCCACATGCTGTTCTTACGATCTGCGAGATTGTTTTTCCTTTTGGTAGTAGCTGATTTCAGTGCATTTTGAAGTACTGATATTTATGTAATTCTACAGGCTGAAAGTTCCAGTGGGTCACAGGAGCAGGTAAATCCACTTATCTGAATTTCTAGTCAAGTAGAATTTTTAAGTGTAATAGCTCAGGAGATGGCTCAATTGTGTTCGATCTGTTTCCTTAGGTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAGGTATATCCAGGTGTTCACAGTTGTGTGGTTATTCATTTTTACCTTGAATAATTTGAGCTTTTATTTCTGATGTCTTAACTTCTGAACTTTTGTAGGCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAGGTAGCACTAACCCTATATCCAGCTTCACTTTCTGGTGGTCACTCGATTTTTCAGGATGACTTCATAATTGTTTATATTTCATATAGGTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAGGTCGGAAGCTACATCAAGTTTTTTTTTGATCCAGTAACTAGTTTCTTGTTACATCTCTAACCATTGAATATGTATCCGTCTTCATAATTTTATAGGAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGC-TTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTA</genome_strand>
        <mrna_strand>TTGGAACCAGTTGCAAATATGTTTAAGCAG................................................................................................CATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGAAAGTTCCAGTGGGTCACAGGAGCAG............................................................................................GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG...............................................................................................GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG......................................................................................GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG...............................................................................................GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTTATCTTAACAAAGTTAAAGCCGCAGTGTGGTGGACAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417117" ref_strand="+" ref_description="SGN-E417117 [STM-24-P19]">
      <seq>tcaattgcttgagaaggaagcattctggatgccgagctttgcttagagatgataaggtagaggatttatctcgaatggtataggcctattccaccaggatccctaaaggtttggaaccagttgcaaatatgtttaagcagcatgtcactgctgaaggcatggtgttggtgcaacaggccgaagactcagcaagtaacaagggctgaaagttccagtggttcacaggagcaggtctttgttaggaaggttattgagctgcatgacaaatatatggcatatgtgaccgacagttttgcaaataactctctctttcacaaggctttgaaagaggcatttgaagtcttctgtaacaaaattggtgctggctgttctaatgcaaaactccttgcctcttattgggataatatccttaagaagggtgggaagtgagaaactcagtgatgatgctattgangagacattagataaggtggtcaagcttcttgcgtatatcagtgacaaagaccttttttgcggagttctacaggaagaagctttctcggcgactgctttttgataaaagtgccaatgatgaccatgaaaggcttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76434" stop="74320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76134" g_stop="76080" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76079" i_stop="75972" i_length="108">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.802" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75971" g_stop="75891" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="140" r_length="84" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75890" i_stop="75795" i_length="96">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75794" g_stop="75735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="201" r_length="61" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75734" i_stop="75376" i_length="359">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75375" g_stop="75346" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="231" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75253" g_stop="75167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="318" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75071" g_stop="74922" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="469" r_length="151" r_score="0.940"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74921" i_stop="74836" i_length="86">
            <donor d_prob="0.884" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74835" g_stop="74780" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="526" r_length="57" r_score="0.911"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95">
            <donor d_prob="0.951" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74684" g_stop="74620" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="591" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E417117" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76134" e_stop="76080"/>
          <exon e_start="75971" e_stop="75891"/>
          <exon e_start="75794" e_stop="75735"/>
          <exon e_start="75375" e_stop="75346"/>
          <exon e_start="75253" e_stop="75167"/>
          <exon e_start="75071" e_stop="74922"/>
          <exon e_start="74835" e_stop="74780"/>
          <exon e_start="74684" e_stop="74620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCTTGAGAAGG-AGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATGTCAGGTAGAGGATTTATCTCGAAT-GTACAGGC-TATTCCA-CAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAGGTATGGTCTTCTATTTAATTGTTGTGCAACTACAGGGTTTTTGTTGAGTTCTTTTTTTTGGTGGTTAAATACTTTGTTATGGTACATATTTTGCAGCATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAA-GGTCTGTTGACTGAACATGCCATGCTTCATTTGGCAATATGTTTTTTGGCCCCTTTTTCTTATTTTAATATCCATGCTTCTTGAACTAGTAGAGAAAAAGTTTAGGTGTATGGGTAGGAAAAAACAAGGGAAGTTTAAGGGGAGAATGCATAGAGCAACCTATCTTCGAGAACAATCAAGTAATCTAGAAAAAAAGGGAGTTCAAGACTTTGAATAGATTAAATAGCATTATCAGAAATACAAAGATATATGTGAAATTGCATCCACATGCTGTTCTTACGATCTGCGAGATTGTTTTTCCTTTTGGTAGTAGCTGATTTCAGTGCATTTTGAAGTACTGATATTTATGTAATTCTACAGGCTGAAAGTTCCAGTGGGTCACAGGAGCAGGTAAATCCACTTATCTGAATTTCTAGTCAAGTAGAATTTTTAAGTGTAATAGCTCAGGAGATGGCTCAATTGTGTTCGATCTGTTTCCTTAGGTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAGGTATATCCAGGTGTTCACAGTTGTGTGGTTATTCATTTTTACCTTGAATAATTTGAGCTTTTATTTCTGATGTCTTAACTTCTGAACTTTTGTAGGCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGG-AGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAGGTAGCACTAACCCTATATCCAGCTTCACTTTCTGGTGGTCACTCGATTTTTCAGGATGACTTCATAATTGTTTATATTTCATATAGGTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTT-GCTGAGTTCTACAGGTCGGAAGCTACATCAAGTTTTTTTTTGATCCAGTAACTAGTTTCTTGTTACATCTCTAACCATTGAATATGTATCCGTCTTCATAATTTTATAGGAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCT</genome_strand>
        <mrna_strand>TCAATTGCTTGAGAAGGAAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG............................................................................................................GTAGAGGATTTATCTCGAATGGTATAGGCCTATTCCACCAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG................................................................................................CATGTCACTGCTGAAGGCATGGTGTTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAGG.......................................................................................................................................................................................................................................................................................................................................................................GCTGAAAGTTCCAGTGGTTCACAGGAGCAG............................................................................................GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG...............................................................................................GCTTTGAAAGAGGCATTTGAAGTCTTCTGTAACAAAATTGGTGCTGGCTGTTCTAATGCAAAACTCCTTGCCTCTTATTGGGATAATATCCTTAAGAAGGGTGGGAAGTGAGAAACTCAGTGATGATGCTATTGANGAGACATTAGATAAG......................................................................................GTGGTCAAGCTTCTTGCGTATATCAGTGACAAAGACCTTTTTTGCGGAGTTCTACAG...............................................................................................GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420478" ref_strand="+" ref_description="SGN-E420478 [STM-31-E10]">
      <seq>gttttatgaaaatgactttgaagatgcaatgcttaaagatacagcagcgtattattctcgaaaagcatcaaactggattgtggaagattcttgtccagattatatgttgaaggcagaagagtgcttgaaaaaagagaaggatagagtttctcattatttgcactcaagcagcgagacaaaacttctggagaaagtgcaaaatgaattattggttgtatataccaatcaattgcttgagaaggagcattctggatgccgagctttgcttagagatgataaggtagaggatttatctcgaatgtataggctattccacaggatccctaaaggtttggaaccagttgcaaatatgtttaagcagcatgtcactgctgaaggcatggtgttggtgcaacaggccgaagactcagcaagtaacaaggctgaaagttccagtggttcacaggagcaggtctttgttaggaaggttattgagctgcatgacaaatatatggcatatgtgaccgacagttttgcaaataactctctctttcacaaggctttgaaagaagcatttgaggtcttctgtaacaaaattgttgctggcttgtctagtgcagagctccttgcctcttattgtgataatatccttaagaagggcgggagtgagaaactcagtgatgatgctattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77480" stop="74638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77180" g_stop="77069" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76971" g_stop="76894" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="190" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76169" g_stop="76080" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="280" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76079" i_stop="75972" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75971" g_stop="75891" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="361" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75890" i_stop="75795" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75794" g_stop="75735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="421" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75734" i_stop="75376" i_length="359">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75375" g_stop="75346" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="451" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75253" g_stop="75167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="538" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75071" g_stop="74938" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="672" r_length="134" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E420478" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77180" e_stop="77069"/>
          <exon e_start="76971" e_stop="76894"/>
          <exon e_start="76169" e_stop="76080"/>
          <exon e_start="75971" e_stop="75891"/>
          <exon e_start="75794" e_stop="75735"/>
          <exon e_start="75375" e_stop="75346"/>
          <exon e_start="75253" e_stop="75167"/>
          <exon e_start="75071" e_stop="74938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAGGTAAAGATCCTAATTCTTATCAGCAATTTTATTTAGTGCATAAGTTGGTCATATACTTATCCCAGAATGTAACTGATACCTGTTATTTCTAAAACAGGCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAGGTCAGTATTGGAATGAGGCACTTGAAAATTGATATATTAGTATTTTCTCGGCATCTTAACTACTGATGAAAAGCTATTTAGAACTTCAAAATAAACTGTTTTGTATTTATGATATGGTGCAGTAACTATTTAACCCTTCTCTAAATGTTTAATTCTGTTGGATTCTTGGAGTTCCCATTAATTGGTGTCGGGTACTTGACTGCATTCTCCTTCGATGATTTCTTTGAATAAACTGAATACTTACGAGATGAAAGAAAATAGTCGTTCCAAACCTTTCAATTTAGTTTGTTCATTGTACTCGGAGGAGGAATAAAGTATTCATCTTGTGCATTTACAACTATGCTTCAGTGAGATGCTGTGCTTTCTTTTCGTCCATATTCTGATCATCTTTTTGAGCAGATTCTACTGAAAATTGCAAAAACTTTCCACTTTAAGTTAGAGGTGTTTCTCCATGATTATGCATCATTAATGAATCTCCTTCTTCATTATTCTTTTGCTTGAAACACATTTTCTTCATTGAGCCAAATGTACAAAGTGATGTTTTTATTTTTATTTGGAGAAACTAAAAACATTGACGCATATTACTTTGTCTCATGTTGGTTTTATCAGGTCATTACTTTCTAAGTTTTTACTTGATTAAGTCTGTTTAGTTTTGAAATGAGTTATGTTCAAAGTGCCTCTGGTTGCATTTATTTTTTCAATTGAGGCTACACTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATGTCAGGTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAGGTATGGTCTTCTATTTAATTGTTGTGCAACTACAGGGTTTTTGTTGAGTTCTTTTTTTTGGTGGTTAAATACTTTGTTATGGTACATATTTTGCAGCATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAGGTCTGTTGACTGAACATGCCATGCTTCATTTGGCAATATGTTTTTTGGCCCCTTTTTCTTATTTTAATATCCATGCTTCTTGAACTAGTAGAGAAAAAGTTTAGGTGTATGGGTAGGAAAAAACAAGGGAAGTTTAAGGGGAGAATGCATAGAGCAACCTATCTTCGAGAACAATCAAGTAATCTAGAAAAAAAGGGAGTTCAAGACTTTGAATAGATTAAATAGCATTATCAGAAATACAAAGATATATGTGAAATTGCATCCACATGCTGTTCTTACGATCTGCGAGATTGTTTTTCCTTTTGGTAGTAGCTGATTTCAGTGCATTTTGAAGTACTGATATTTATGTAATTCTACAGGCTGAAAGTTCCAGTGGGTCACAGGAGCAGGTAAATCCACTTATCTGAATTTCTAGTCAAGTAGAATTTTTAAGTGTAATAGCTCAGGAGATGGCTCAATTGTGTTCGATCTGTTTCCTTAGGTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAGGTATATCCAGGTGTTCACAGTTGTGTGGTTATTCATTTTTACCTTGAATAATTTGAGCTTTTATTTCTGATGTCTTAACTTCTGAACTTTTGTAGGCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGA</genome_strand>
        <mrna_strand>GTTTTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACAGCAGCGTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG.................................................................................................GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG............................................................................................................GTAGAGGATTTATCTCGAATGTATAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG................................................................................................CATGTCACTGCTGAAGGCATGGTGTTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGAAAGTTCCAGTGGTTCACAGGAGCAG............................................................................................GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG...............................................................................................GCTTTGAAAGAAGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTTGTCTAGTGCAGAGCTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331213" ref_strand="+" ref_description="SGN-E331213 [cTOD-6-K21]">
      <seq>aaacttctggagaaagtgcaaaatgaattattggttgtatataccaatcaattgcttgagaaggagcattctggatgccgagctttgcttagagatgataaggtagaggatttatctcgaatgtacaggctattccacaggatccctaaaggtttggaaccagttgcaaatatgtttaagcagcatgtcactgctgaaggcatggtattggtgcaacaggccgaagactcagcaagtaacaaggctgaaagttccagtgggtcacaggagcaggtctttgttaggaaggttattgagctgcatgacaaatatatggcatatgtgaccgacagttttgcaaataactctctctttcacaaggctttgaaagaggcatttgaggtcttctgtaacaaaattgttgctggctgttctagtgcagaactccttgcctcttattgtgataatatccttaagaagggcgggagtgagaaactcagtgatgatgctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76477" stop="74639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76181" g_stop="76080" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76079" i_stop="75972" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75971" g_stop="75891" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="183" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75890" i_stop="75795" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75794" g_stop="75735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="243" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75734" i_stop="75376" i_length="359">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75375" g_stop="75346" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="273" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75253" g_stop="75167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="360" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75071" g_stop="74939" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="493" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E331213" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76181" e_stop="76080"/>
          <exon e_start="75971" e_stop="75891"/>
          <exon e_start="75794" e_stop="75735"/>
          <exon e_start="75375" e_stop="75346"/>
          <exon e_start="75253" e_stop="75167"/>
          <exon e_start="75071" e_stop="74939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATGTCAGGTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAGGTATGGTCTTCTATTTAATTGTTGTGCAACTACAGGGTTTTTGTTGAGTTCTTTTTTTTGGTGGTTAAATACTTTGTTATGGTACATATTTTGCAGCATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAGGTCTGTTGACTGAACATGCCATGCTTCATTTGGCAATATGTTTTTTGGCCCCTTTTTCTTATTTTAATATCCATGCTTCTTGAACTAGTAGAGAAAAAGTTTAGGTGTATGGGTAGGAAAAAACAAGGGAAGTTTAAGGGGAGAATGCATAGAGCAACCTATCTTCGAGAACAATCAAGTAATCTAGAAAAAAAGGGAGTTCAAGACTTTGAATAGATTAAATAGCATTATCAGAAATACAAAGATATATGTGAAATTGCATCCACATGCTGTTCTTACGATCTGCGAGATTGTTTTTCCTTTTGGTAGTAGCTGATTTCAGTGCATTTTGAAGTACTGATATTTATGTAATTCTACAGGCTGAAAGTTCCAGTGGGTCACAGGAGCAGGTAAATCCACTTATCTGAATTTCTAGTCAAGTAGAATTTTTAAGTGTAATAGCTCAGGAGATGGCTCAATTGTGTTCGATCTGTTTCCTTAGGTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAGGTATATCCAGGTGTTCACAGTTGTGTGGTTATTCATTTTTACCTTGAATAATTTGAGCTTTTATTTCTGATGTCTTAACTTCTGAACTTTTGTAGGCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTG</genome_strand>
        <mrna_strand>AAACTTCTGGAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG............................................................................................................GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG................................................................................................CATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGAAAGTTCCAGTGGGTCACAGGAGCAG............................................................................................GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG...............................................................................................GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272679" ref_strand="+" ref_description="SGN-E272679 [cLEM-21-K3]">
      <seq>aagatgcaatgcttaaagatacatcagcttattattctctaaaagcatcaggctggattgtggaagattcttgtccagattatatgttgaaggcagaagagtgcttgaaaaaagagaaggatagagtttctcattatttgcactcaagcagcgagacaaaacttctggagaaagtgcaaaatgaattattggttgtatataccaatcaattgcttgagaaggagcattctggatgccgagctttgcttaaagatgataaggtagaggatttatctcgaatgtacaggctattccacaggatccctaaaggtttggaaccagttgcaaatatgtttaagcagcatgtcactgctgaaggcatggtattggtgcaacaggccgaagactcagcaagtaacaaggctgaaagttccagtgggtcacaagagcaggtctttgttaggaaggttattgagctgcatgacaaatatatggcatatgtgaccgacagttttgcaaataactctctctttcacaaggctttgaaagaggcatttgatgtcttctgtaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77460" stop="74735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77160" g_stop="77069" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76971" g_stop="76894" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="170" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76169" g_stop="76080" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="260" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76079" i_stop="75972" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75971" g_stop="75891" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="341" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75890" i_stop="75795" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75794" g_stop="75735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="401" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75734" i_stop="75376" i_length="359">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75375" g_stop="75346" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="431" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75253" g_stop="75167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="518" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75071" g_stop="75035" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="555" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E272679" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77160" e_stop="77069"/>
          <exon e_start="76971" e_stop="76894"/>
          <exon e_start="76169" e_stop="76080"/>
          <exon e_start="75971" e_stop="75891"/>
          <exon e_start="75794" e_stop="75735"/>
          <exon e_start="75375" e_stop="75346"/>
          <exon e_start="75253" e_stop="75167"/>
          <exon e_start="75071" e_stop="75035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAGGTAAAGATCCTAATTCTTATCAGCAATTTTATTTAGTGCATAAGTTGGTCATATACTTATCCCAGAATGTAACTGATACCTGTTATTTCTAAAACAGGCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAGGTCAGTATTGGAATGAGGCACTTGAAAATTGATATATTAGTATTTTCTCGGCATCTTAACTACTGATGAAAAGCTATTTAGAACTTCAAAATAAACTGTTTTGTATTTATGATATGGTGCAGTAACTATTTAACCCTTCTCTAAATGTTTAATTCTGTTGGATTCTTGGAGTTCCCATTAATTGGTGTCGGGTACTTGACTGCATTCTCCTTCGATGATTTCTTTGAATAAACTGAATACTTACGAGATGAAAGAAAATAGTCGTTCCAAACCTTTCAATTTAGTTTGTTCATTGTACTCGGAGGAGGAATAAAGTATTCATCTTGTGCATTTACAACTATGCTTCAGTGAGATGCTGTGCTTTCTTTTCGTCCATATTCTGATCATCTTTTTGAGCAGATTCTACTGAAAATTGCAAAAACTTTCCACTTTAAGTTAGAGGTGTTTCTCCATGATTATGCATCATTAATGAATCTCCTTCTTCATTATTCTTTTGCTTGAAACACATTTTCTTCATTGAGCCAAATGTACAAAGTGATGTTTTTATTTTTATTTGGAGAAACTAAAAACATTGACGCATATTACTTTGTCTCATGTTGGTTTTATCAGGTCATTACTTTCTAAGTTTTTACTTGATTAAGTCTGTTTAGTTTTGAAATGAGTTATGTTCAAAGTGCCTCTGGTTGCATTTATTTTTTCAATTGAGGCTACACTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATGTCAGGTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAGGTATGGTCTTCTATTTAATTGTTGTGCAACTACAGGGTTTTTGTTGAGTTCTTTTTTTTGGTGGTTAAATACTTTGTTATGGTACATATTTTGCAGCATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAGGTCTGTTGACTGAACATGCCATGCTTCATTTGGCAATATGTTTTTTGGCCCCTTTTTCTTATTTTAATATCCATGCTTCTTGAACTAGTAGAGAAAAAGTTTAGGTGTATGGGTAGGAAAAAACAAGGGAAGTTTAAGGGGAGAATGCATAGAGCAACCTATCTTCGAGAACAATCAAGTAATCTAGAAAAAAAGGGAGTTCAAGACTTTGAATAGATTAAATAGCATTATCAGAAATACAAAGATATATGTGAAATTGCATCCACATGCTGTTCTTACGATCTGCGAGATTGTTTTTCCTTTTGGTAGTAGCTGATTTCAGTGCATTTTGAAGTACTGATATTTATGTAATTCTACAGGCTGAAAGTTCCAGTGGGTCACAGGAGCAGGTAAATCCACTTATCTGAATTTCTAGTCAAGTAGAATTTTTAAGTGTAATAGCTCAGGAGATGGCTCAATTGTGTTCGATCTGTTTCCTTAGGTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAGGTATATCCAGGTGTTCACAGTTGTGTGGTTATTCATTTTTACCTTGAATAATTTGAGCTTTTATTTCTGATGTCTTAACTTCTGAACTTTTGTAGGCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAA</genome_strand>
        <mrna_strand>AAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCTAAAAGCATCAGGCTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG.................................................................................................GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAAAGATGATAAG............................................................................................................GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG................................................................................................CATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG.......................................................................................................................................................................................................................................................................................................................................................................GCTGAAAGTTCCAGTGGGTCACAAGAGCAG............................................................................................GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG...............................................................................................GCTTTGAAAGAGGCATTTGATGTCTTCTGTAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208080" ref_strand="+" ref_description="SGN-E208080 [cLEC-34-J13]">
      <seq>ttgatagagccttattaaagaacgtgctaggtatatttgttgaaattgggatgggggaaatggagttctatgaaaatgactttgaagatgcaatgcttaaagatacatcagcttattattctcgaaaagcatcaaactggattgtggaagattcttgtccagattatatgttgaaggcagaagagtgcttgaaaaaagagaaggatagagtttctcattatttgcactcaagcagcgagacaaaacttctggagaaagtgcaaaatgaattattggttgtatataccaatcaattgcttgagaaggagcattctggatgccgagctttgcttagagatgataaggtagaggatttatctcgaatgtacaggctattccacaggatccctaaaggtttggaaccagttgcaaatatgtttaagcaggctgaaagttccagtgggtcacaggagcaggtctttgttaggaaggttattgagctgcatgacaaatatatggcatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77544" stop="74904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77244" g_stop="77069" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76971" g_stop="76894" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="254" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76169" g_stop="76080" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="344" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76079" i_stop="75972" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75971" g_stop="75891" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="425" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75890" i_stop="75376" i_length="515">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75375" g_stop="75346" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="455" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75253" g_stop="75204" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="505" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E208080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77244" e_stop="77069"/>
          <exon e_start="76971" e_stop="76894"/>
          <exon e_start="76169" e_stop="76080"/>
          <exon e_start="75971" e_stop="75891"/>
          <exon e_start="75375" e_stop="75346"/>
          <exon e_start="75253" e_stop="75204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAGGTAAAGATCCTAATTCTTATCAGCAATTTTATTTAGTGCATAAGTTGGTCATATACTTATCCCAGAATGTAACTGATACCTGTTATTTCTAAAACAGGCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAGGTCAGTATTGGAATGAGGCACTTGAAAATTGATATATTAGTATTTTCTCGGCATCTTAACTACTGATGAAAAGCTATTTAGAACTTCAAAATAAACTGTTTTGTATTTATGATATGGTGCAGTAACTATTTAACCCTTCTCTAAATGTTTAATTCTGTTGGATTCTTGGAGTTCCCATTAATTGGTGTCGGGTACTTGACTGCATTCTCCTTCGATGATTTCTTTGAATAAACTGAATACTTACGAGATGAAAGAAAATAGTCGTTCCAAACCTTTCAATTTAGTTTGTTCATTGTACTCGGAGGAGGAATAAAGTATTCATCTTGTGCATTTACAACTATGCTTCAGTGAGATGCTGTGCTTTCTTTTCGTCCATATTCTGATCATCTTTTTGAGCAGATTCTACTGAAAATTGCAAAAACTTTCCACTTTAAGTTAGAGGTGTTTCTCCATGATTATGCATCATTAATGAATCTCCTTCTTCATTATTCTTTTGCTTGAAACACATTTTCTTCATTGAGCCAAATGTACAAAGTGATGTTTTTATTTTTATTTGGAGAAACTAAAAACATTGACGCATATTACTTTGTCTCATGTTGGTTTTATCAGGTCATTACTTTCTAAGTTTTTACTTGATTAAGTCTGTTTAGTTTTGAAATGAGTTATGTTCAAAGTGCCTCTGGTTGCATTTATTTTTTCAATTGAGGCTACACTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATGTCAGGTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAGGTATGGTCTTCTATTTAATTGTTGTGCAACTACAGGGTTTTTGTTGAGTTCTTTTTTTTGGTGGTTAAATACTTTGTTATGGTACATATTTTGCAGCATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAGGTCTGTTGACTGAACATGCCATGCTTCATTTGGCAATATGTTTTTTGGCCCCTTTTTCTTATTTTAATATCCATGCTTCTTGAACTAGTAGAGAAAAAGTTTAGGTGTATGGGTAGGAAAAAACAAGGGAAGTTTAAGGGGAGAATGCATAGAGCAACCTATCTTCGAGAACAATCAAGTAATCTAGAAAAAAAGGGAGTTCAAGACTTTGAATAGATTAAATAGCATTATCAGAAATACAAAGATATATGTGAAATTGCATCCACATGCTGTTCTTACGATCTGCGAGATTGTTTTTCCTTTTGGTAGTAGCTGATTTCAGTGCATTTTGAAGTACTGATATTTATGTAATTCTACAGGCTGAAAGTTCCAGTGGGTCACAGGAGCAGGTAAATCCACTTATCTGAATTTCTAGTCAAGTAGAATTTTTAAGTGTAATAGCTCAGGAGATGGCTCAATTGTGTTCGATCTGTTTCCTTAGGTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGT</genome_strand>
        <mrna_strand>TTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG.................................................................................................GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG............................................................................................................GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAAGTTCCAGTGGGTCACAGGAGCAG............................................................................................GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483226" ref_strand="+" ref_description="SGN-E483226 [cSTE-8-B9]">
      <seq>aaaagatgggcaaatcataaacttatggtcaggtggctttcacggttcttccattatcttgatcggtattttattgctcgaagatcactccctgcacttaatgaagttggtctgacgtgcttccgtgatttggtttatcaggagttgaaaagtaaagctagagatgcagttatagcactgattgatcaagaacgtgagggtgagcagattgatagagcgttattgaagaacgtgctaggcatatttgttgaaattggaatgggggagatggagttctatgaaaatgactttgaagatgcaatgcttaaagatacagcagcgtattattctcgaaaagcatcaaactggattgtggaagattcttgtccagattatatgttgaaggcagaagagtgcttgaaaaaagagaaggatagagtttctcattatttgcactcaagcagcgagacaaaacttctggagaaagtgcaaaatgaattattggttgtatataccaatcaattgcttgagaaggagcattctggatgccgagctttgcttagagatgataaggtagaggatttatctcgaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77963" stop="75650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77663" g_stop="77532" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="180" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77272" g_stop="77069" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="384" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76971" g_stop="76894" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="462" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76169" g_stop="76080" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="552" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76079" i_stop="75972" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75971" g_stop="75950" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="574" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E483226" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77663" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77069"/>
          <exon e_start="76971" e_stop="76894"/>
          <exon e_start="76169" e_stop="76080"/>
          <exon e_start="75971" e_stop="75950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAGGTAAAGATCCTAATTCTTATCAGCAATTTTATTTAGTGCATAAGTTGGTCATATACTTATCCCAGAATGTAACTGATACCTGTTATTTCTAAAACAGGCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAGGTCAGTATTGGAATGAGGCACTTGAAAATTGATATATTAGTATTTTCTCGGCATCTTAACTACTGATGAAAAGCTATTTAGAACTTCAAAATAAACTGTTTTGTATTTATGATATGGTGCAGTAACTATTTAACCCTTCTCTAAATGTTTAATTCTGTTGGATTCTTGGAGTTCCCATTAATTGGTGTCGGGTACTTGACTGCATTCTCCTTCGATGATTTCTTTGAATAAACTGAATACTTACGAGATGAAAGAAAATAGTCGTTCCAAACCTTTCAATTTAGTTTGTTCATTGTACTCGGAGGAGGAATAAAGTATTCATCTTGTGCATTTACAACTATGCTTCAGTGAGATGCTGTGCTTTCTTTTCGTCCATATTCTGATCATCTTTTTGAGCAGATTCTACTGAAAATTGCAAAAACTTTCCACTTTAAGTTAGAGGTGTTTCTCCATGATTATGCATCATTAATGAATCTCCTTCTTCATTATTCTTTTGCTTGAAACACATTTTCTTCATTGAGCCAAATGTACAAAGTGATGTTTTTATTTTTATTTGGAGAAACTAAAAACATTGACGCATATTACTTTGTCTCATGTTGGTTTTATCAGGTCATTACTTTCTAAGTTTTTACTTGATTAAGTCTGTTTAGTTTTGAAATGAGTTATGTTCAAAGTGCCTCTGGTTGCATTTATTTTTTCAATTGAGGCTACACTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATGTCAGGTAGAGGATTTATCTCGAATGT</genome_strand>
        <mrna_strand>AAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGATCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG............................................................................................................................GTTTATCAGGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCACTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAGCAGATTGATAGAGCGTTATTGAAGAACGTGCTAGGCATATTTGTTGAAATTGGAATGGGGGAGATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACAGCAGCGTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG.................................................................................................GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG............................................................................................................GTAGAGGATTTATCTCGAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318960" ref_strand="+" ref_description="SGN-E318960 [cTOB-14-F13]">
      <seq>tgcacttaatgaagttggtctgacgtgcttccgtgatttggtttatcaagagttgaaaagtaaagctagagatgcagttatagcgctgattgatcaagaacgtgagggtgaacagattgatagagccttattaaagaacgtgctaggtatatttgttgaaattgggatgggggaaatggagttctatgaaaatgactttgaagatgcaatgcttaaagatacatcagcttattattctcgaaaagcatcaaactggattgtggaagattcttgtccagattatatgttgaaggcagaagagtgcttgaaaaaagagaaggatagagtttctcattatttgcactcaagcagcgagacaaaacttctggagaaagtgcaaaatgaattattggttgtatataccaatcaattgcttgagaaggagcattctggatgccgagctttgcttagagatgataaggtattaattccttgcatattaggtgtctactagtcaatatgtatttgacttcttatgtgagtatcttgttttccccccttcttttcatccatccccttttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77871" stop="75676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77571" g_stop="77532" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="88" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77272" g_stop="77069" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="292" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76971" g_stop="76894" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="370" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76169" g_stop="75976" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="564" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E318960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77571" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77069"/>
          <exon e_start="76971" e_stop="76894"/>
          <exon e_start="76169" e_stop="75976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAGGTAAAGATCCTAATTCTTATCAGCAATTTTATTTAGTGCATAAGTTGGTCATATACTTATCCCAGAATGTAACTGATACCTGTTATTTCTAAAACAGGCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAGGTCAGTATTGGAATGAGGCACTTGAAAATTGATATATTAGTATTTTCTCGGCATCTTAACTACTGATGAAAAGCTATTTAGAACTTCAAAATAAACTGTTTTGTATTTATGATATGGTGCAGTAACTATTTAACCCTTCTCTAAATGTTTAATTCTGTTGGATTCTTGGAGTTCCCATTAATTGGTGTCGGGTACTTGACTGCATTCTCCTTCGATGATTTCTTTGAATAAACTGAATACTTACGAGATGAAAGAAAATAGTCGTTCCAAACCTTTCAATTTAGTTTGTTCATTGTACTCGGAGGAGGAATAAAGTATTCATCTTGTGCATTTACAACTATGCTTCAGTGAGATGCTGTGCTTTCTTTTCGTCCATATTCTGATCATCTTTTTGAGCAGATTCTACTGAAAATTGCAAAAACTTTCCACTTTAAGTTAGAGGTGTTTCTCCATGATTATGCATCATTAATGAATCTCCTTCTTCATTATTCTTTTGCTTGAAACACATTTTCTTCATTGAGCCAAATGTACAAAGTGATGTTTTTATTTTTATTTGGAGAAACTAAAAACATTGACGCATATTACTTTGTCTCATGTTGGTTTTATCAGGTCATTACTTTCTAAGTTTTTACTTGATTAAGTCTGTTTAGTTTTGAAATGAGTTATGTTCAAAGTGCCTCTGGTTGCATTTATTTTTTCAATTGAGGCTACACTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATG</genome_strand>
        <mrna_strand>TGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG............................................................................................................................GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG.................................................................................................GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736503" ref_strand="+" ref_description="SGN-E736503 [LC06AB04]">
      <seq>ctcgtgttttctgcaaccaaactgcttttgtgtttatgacgactagccagatgaagacaatcgagctggaggaaggatggaacttcatgcagaagggaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagctccgaagagtacatgatgctctacacaactatctataacatgtgtacacagaagccccctcatgattactctcagcagttatatgagaaatacaaggaagcctttgaagagtacatcaattctacagttctatcttctttgagagagaagcacgacgagttcatgctgagggagctcgtgaaaagatgggcaaatcataaacttatggtcaggtggctttcacggttcttccattatcttgatcggtattttattgctcgaaggtcactccctgcacttaatgaagttggtctgacgtgcttccgtgatttggtttatcaagagttgaaaagtaaagctagagatgcagttatagcgctgattgatcaagaacgtgagggtgaacagattgatagagccttattaaagaacgtgctaggtatatttgttgaaattgggatgggggaaatggagttctatgaaaatgactttgaagatgcaatgcttaaagatacatcagcttattattctcgaaaagcatcaaactggattgtggaagattcttgtccagattatatgttgaaggcagaagagtgcttgaaaaaagagaaggatagagtttctcattatttgcactcaagcagcgagacaaaacttctggagaaagtgcaaaatgaattattggttgtatataccaatcaattgcttgagaaggagcattctggatgccgagctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79048" stop="75794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78748" g_stop="78723" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78722" i_stop="78365" i_length="358">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78364" g_stop="78219" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="172" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78107" g_stop="78008" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="272" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290">
            <donor d_prob="0.285" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77717" g_stop="77532" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="458" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="506" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77272" g_stop="77069" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="710" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76971" g_stop="76894" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="788" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76169" g_stop="76094" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="864" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E736503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78748" e_stop="78723"/>
          <exon e_start="78364" e_stop="78219"/>
          <exon e_start="78107" e_stop="78008"/>
          <exon e_start="77717" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77069"/>
          <exon e_start="76971" e_stop="76894"/>
          <exon e_start="76169" e_stop="76094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGTTTTCTGCAACCAAACTGCTGTACGTTTGTTTATGTTTCTCTCTTTCGTGTTTTTTTTCATCTCCAGAGCCCTTTTATCCATTCCGTCTCTATCTCTAATTCCATCCAAACCCTAACCCTATCGAATTGTAAATTAATGCTTAATTTTTTTTTCTGTAATATATATATATATATCCCGCTTTCATCCCATCCTGTTTATGATTGATTGGTGGTAGGAGTGTATGCTGCTTCTTTTGGGTTTTGGGGCCTAAGAATTCATTGTGATTTTTCTTAAATCAATTGCTCGCATATTGTAGTTTCATGTGAATGTGATCAATAGGTTGTTTCTCCGAGTGTGATTTGATTTTACAAATTCAAGCTAATGTTGCTCATTTGCAGTTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAGGTAAAGATCCTAATTCTTATCAGCAATTTTATTTAGTGCATAAGTTGGTCATATACTTATCCCAGAATGTAACTGATACCTGTTATTTCTAAAACAGGCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAGGTCAGTATTGGAATGAGGCACTTGAAAATTGATATATTAGTATTTTCTCGGCATCTTAACTACTGATGAAAAGCTATTTAGAACTTCAAAATAAACTGTTTTGTATTTATGATATGGTGCAGTAACTATTTAACCCTTCTCTAAATGTTTAATTCTGTTGGATTCTTGGAGTTCCCATTAATTGGTGTCGGGTACTTGACTGCATTCTCCTTCGATGATTTCTTTGAATAAACTGAATACTTACGAGATGAAAGAAAATAGTCGTTCCAAACCTTTCAATTTAGTTTGTTCATTGTACTCGGAGGAGGAATAAAGTATTCATCTTGTGCATTTACAACTATGCTTCAGTGAGATGCTGTGCTTTCTTTTCGTCCATATTCTGATCATCTTTTTGAGCAGATTCTACTGAAAATTGCAAAAACTTTCCACTTTAAGTTAGAGGTGTTTCTCCATGATTATGCATCATTAATGAATCTCCTTCTTCATTATTCTTTTGCTTGAAACACATTTTCTTCATTGAGCCAAATGTACAAAGTGATGTTTTTATTTTTATTTGGAGAAACTAAAAACATTGACGCATATTACTTTGTCTCATGTTGGTTTTATCAGGTCATTACTTTCTAAGTTTTTACTTGATTAAGTCTGTTTAGTTTTGAAATGAGTTATGTTCAAAGTGCCTCTGGTTGCATTTATTTTTTCAATTGAGGCTACACTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGC</genome_strand>
        <mrna_strand>CTCGTGTTTTCTGCAACCAAACTGCT......................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC...............................................................................................................AACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACA..................................................................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG............................................................................................................................GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG.................................................................................................GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441846" ref_strand="+" ref_description="SGN-E441846 [cSTA-31-M10]">
      <seq>ttttattgctcgaagatcactccctgcacttaatgaagttggtctgacgtgcttccgtgatttggtttatcaggagttgaaaagtaaagctagagatgcagttatagcactgattgatcaagaacgtgagggtgagcagattgatagagcgttattgaagaacgtgctaggcatatttgttgaaattggaatgggggagatggagttctatgaaaatgactttgaagatgcaatgcttaaagatacagcagcgtattattctcgaaaagcatcaaactggattgtggaagattcttgtccagattatatgttgaaggcagaagagtgcttgaaaaaagagaaggatagagtttctcattatttgcactcaagcagcgagacaaaacttctggagaaagtgcaaaatgaattattggttgtatataccaatcaattgcttgagaaggagcattctggatgccgagctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77895" stop="75794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77595" g_stop="77532" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="112" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77272" g_stop="77069" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="316" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76971" g_stop="76894" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="394" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76169" g_stop="76094" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="470" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E441846" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77595" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77069"/>
          <exon e_start="76971" e_stop="76894"/>
          <exon e_start="76169" e_stop="76094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAGGTAAAGATCCTAATTCTTATCAGCAATTTTATTTAGTGCATAAGTTGGTCATATACTTATCCCAGAATGTAACTGATACCTGTTATTTCTAAAACAGGCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAGGTCAGTATTGGAATGAGGCACTTGAAAATTGATATATTAGTATTTTCTCGGCATCTTAACTACTGATGAAAAGCTATTTAGAACTTCAAAATAAACTGTTTTGTATTTATGATATGGTGCAGTAACTATTTAACCCTTCTCTAAATGTTTAATTCTGTTGGATTCTTGGAGTTCCCATTAATTGGTGTCGGGTACTTGACTGCATTCTCCTTCGATGATTTCTTTGAATAAACTGAATACTTACGAGATGAAAGAAAATAGTCGTTCCAAACCTTTCAATTTAGTTTGTTCATTGTACTCGGAGGAGGAATAAAGTATTCATCTTGTGCATTTACAACTATGCTTCAGTGAGATGCTGTGCTTTCTTTTCGTCCATATTCTGATCATCTTTTTGAGCAGATTCTACTGAAAATTGCAAAAACTTTCCACTTTAAGTTAGAGGTGTTTCTCCATGATTATGCATCATTAATGAATCTCCTTCTTCATTATTCTTTTGCTTGAAACACATTTTCTTCATTGAGCCAAATGTACAAAGTGATGTTTTTATTTTTATTTGGAGAAACTAAAAACATTGACGCATATTACTTTGTCTCATGTTGGTTTTATCAGGTCATTACTTTCTAAGTTTTTACTTGATTAAGTCTGTTTAGTTTTGAAATGAGTTATGTTCAAAGTGCCTCTGGTTGCATTTATTTTTTCAATTGAGGCTACACTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGC</genome_strand>
        <mrna_strand>TTTTATTGCTCGAAGATCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG............................................................................................................................GTTTATCAGGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCACTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAGCAGATTGATAGAGCGTTATTGAAGAACGTGCTAGGCATATTTGTTGAAATTGGAATGGGGGAGATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACAGCAGCGTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG.................................................................................................GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481106" ref_strand="+" ref_description="SGN-E481106 [cSTD-16-F13]">
      <seq>tattgctcgaaagtcactccctgcacttaatgaagttggtctgacgtgcttccatgatttgggttatcaagagttgaaaagtaaagctagagatgcagctatagcactgattgatcaagaacgtgagggtgagcagattgatatagagttattgaagaacgtgctaagcgtatttgttgaaattggaatgggggagatggagttctatgaaaatgactttgaagatgcaatgcttaaagatacagcagcttattattctcgaaaagcatcaaactggattgtggaagattcttgtccagattatatgttgaaggcagaagagtgcttgaaaaaagagaaggatagagtttctcattatttgcactcaagcagcgatgcaaaacttctggagaaagtgcaaaatgaattactggttgtttataccaatcaattgcttgagaaggagcattatggatgccgagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77892" stop="75796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77592" g_stop="77532" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="109" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77272" g_stop="77069" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="313" r_length="204" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76971" g_stop="76894" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="391" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76169" g_stop="76096" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="465" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E481106" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77592" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77069"/>
          <exon e_start="76971" e_stop="76894"/>
          <exon e_start="76169" e_stop="76096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAGGTAAAGATCCTAATTCTTATCAGCAATTTTATTTAGTGCATAAGTTGGTCATATACTTATCCCAGAATGTAACTGATACCTGTTATTTCTAAAACAGGCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAGGTCAGTATTGGAATGAGGCACTTGAAAATTGATATATTAGTATTTTCTCGGCATCTTAACTACTGATGAAAAGCTATTTAGAACTTCAAAATAAACTGTTTTGTATTTATGATATGGTGCAGTAACTATTTAACCCTTCTCTAAATGTTTAATTCTGTTGGATTCTTGGAGTTCCCATTAATTGGTGTCGGGTACTTGACTGCATTCTCCTTCGATGATTTCTTTGAATAAACTGAATACTTACGAGATGAAAGAAAATAGTCGTTCCAAACCTTTCAATTTAGTTTGTTCATTGTACTCGGAGGAGGAATAAAGTATTCATCTTGTGCATTTACAACTATGCTTCAGTGAGATGCTGTGCTTTCTTTTCGTCCATATTCTGATCATCTTTTTGAGCAGATTCTACTGAAAATTGCAAAAACTTTCCACTTTAAGTTAGAGGTGTTTCTCCATGATTATGCATCATTAATGAATCTCCTTCTTCATTATTCTTTTGCTTGAAACACATTTTCTTCATTGAGCCAAATGTACAAAGTGATGTTTTTATTTTTATTTGGAGAAACTAAAAACATTGACGCATATTACTTTGTCTCATGTTGGTTTTATCAGGTCATTACTTTCTAAGTTTTTACTTGATTAAGTCTGTTTAGTTTTGAAATGAGTTATGTTCAAAGTGCCTCTGGTTGCATTTATTTTTTCAATTGAGGCTACACTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTT</genome_strand>
        <mrna_strand>TATTGCTCGAAAGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCATGATTTG............................................................................................................................GGTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGCTATAGCACTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAGCAGATTGATATAGAGTTATTGAAGAACGTGCTAAGCGTATTTGTTGAAATTGGAATGGGGGAGATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACAGCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG.................................................................................................GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGATGCAAAACTTCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCAAAATGAATTACTGGTTGTTTATACCAATCAATTGCTTGAGAAGGAGCATTATGGATGCCGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451953" ref_strand="+" ref_description="SGN-E451953 [cSTS-15-M15]">
      <seq>gtcttctcttctcgtctgccctatcttgctcgctccccttccgcgatctcttcgtgttttctgcaaccaaactgcttttgtgtttatgaagaccatcgagctggaggaaggatggaacttcatgcagaagggaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagctccgatgagtacttaatactctacaatactgtctataacatgtgtacacagaagcccccgcacgattactctcagcagctatatgagaaatacaaggaaacctttgaagaatacatcaattctacagttctatcttctttgagagagaagcacaatgagtttatgctgagggagctcgtgaaaagatgggaaaatcataaatttatggtcaggtggctttcacggttcttccattatcttgatcggtattttattgctcgaaggtcactccctgcacttaatgaagttggtctgacgtgcttccgtgatttggtttatcaaaagttgaaaagtaaagctagagatgcagttatagcactgattgatcaagaacgtgagggtgagcagattgatagagtgttattgaagaacgtgctaggcatatttgttgaaattggattgggggagatggagttctatgaaaatgactttgaagatgcaatgcttaaagatacagcagtttattattctcgaaaagcatcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79092" stop="76807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78798" g_stop="78723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78722" i_stop="78350" i_length="373">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78349" g_stop="78219" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="207" r_length="131" r_score="0.893"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78107" g_stop="78008" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="307" r_length="100" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290">
            <donor d_prob="0.285" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77717" g_stop="77532" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="493" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="541" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77272" g_stop="77107" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="707" r_length="166" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E451953" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78798" e_stop="78723"/>
          <exon e_start="78349" e_stop="78219"/>
          <exon e_start="78107" e_stop="78008"/>
          <exon e_start="77717" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCTGTACGTTTGTTTATGTTTCTCTCTTTCGTGTTTTTTTTCATCTCCAGAGCCCTTTTATCCATTCCGTCTCTATCTCTAATTCCATCCAAACCCTAACCCTATCGAATTGTAAATTAATGCTTAATTTTTTTTTCTGTAATATATATATATATATCCCGCTTTCATCCCATCCTGTTTATGATTGATTGGTGGTAGGAGTGTATGCTGCTTCTTTTGGGTTTTGGGGCCTAAGAATTCATTGTGATTTTTCTTAAATCAATTGCTCGCATATTGTAGTTTCATGTGAATGTGATCAATAGGTTGTTTCTCCGAGTGTGATTTGATTTTACAAATTCAAGCTAATGTTGCTCATTTGCAGTTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACT</genome_strand>
        <mrna_strand>GTCTTCTCTTCTCGTCTGCCCTATCTTGCTCGCTCCCCTTCCGCGATCTCTTCGTGTTTTCTGCAACCAAACTGCT.....................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTATGAAGACCATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGATGAGTACTTAATACTCTACAA...............................................................................................................TACTGTCTATAACATGTGTACACAGAAGCCCCCGCACGATTACTCTCAGCAGCTATATGAGAAATACAAGGAAACCTTTGAAGAATACATCAATTCTACA..................................................................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACAATGAGTTTATGCTGAGGGAGCTCGTGAAAAGATGGGAAAATCATAAATTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG............................................................................................................................GTTTATCAAAAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCACTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAGCAGATTGATAGAGTGTTATTGAAGAACGTGCTAGGCATATTTGTTGAAATTGGATTGGGGGAGATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACAGCAGTTTATTATTCTCGAAAAGCATCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478697" ref_strand="+" ref_description="SGN-E478697 [cSTD-6-L1]">
      <seq>aaagtagtaagtatattttgcaagtttgggttgcactgtcttctcttctcgtctgccctagcttgctcgctcctcttccgcgatctcctcgtgttttctgcaaccaaactgcttttgtgtttatgacgactagccagatgaagaccatcgagctggaggaaggatggaacttcatgcagaagggaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagctccgaagagtacatgatgctctacacaactatctataacatgtgtacacagaagccccctcacgattactctcagcagctatatgagaaatacaaggaagcctttgaagaatacatcaattctacagttctatcttctttgagagagaagcacgatgagtttatgctgagggagctcgtgaaaagatgggcaaatcataaacttatggtcaggtggctttcacggttcttccattatcttgatcggtattttattgctcgaagatcactccctgcacttaatgaagttggtctgacgtgcttccgtgatttggtttatcaggagttgaaaagtaaagctagagatgcagttatagcactgattgatcaagaacgtgagggtgagcagattgatagagcgttattgaagaacgtgctaggcatatttgttgaaattggaatgggggagatggagttctatgaaaatgactttgaagatgcaatgcttaaagatcagcagcgtattattctcgaaagcatcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79119" stop="76807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78793" g_stop="78723" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="113" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78722" i_stop="78365" i_length="358">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.880" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78364" g_stop="78219" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="259" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78107" g_stop="78008" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="359" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290">
            <donor d_prob="0.285" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77717" g_stop="77532" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="545" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="593" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77272" g_stop="77107" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="757" r_length="164" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E478697" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78793" e_stop="78723"/>
          <exon e_start="78364" e_stop="78219"/>
          <exon e_start="78107" e_stop="78008"/>
          <exon e_start="77717" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCTGTACGTTTGTTTATGTTTCTCTCTTTCGTGTTTTTTTTCATCTCCAGAGCCCTTTTATCCATTCCGTCTCTATCTCTAATTCCATCCAAACCCTAACCCTATCGAATTGTAAATTAATGCTTAATTTTTTTTTCTGTAATATATATATATATATCCCGCTTTCATCCCATCCTGTTTATGATTGATTGGTGGTAGGAGTGTATGCTGCTTCTTTTGGGTTTTGGGGCCTAAGAATTCATTGTGATTTTTCTTAAATCAATTGCTCGCATATTGTAGTTTCATGTGAATGTGATCAATAGGTTGTTTCTCCGAGTGTGATTTGATTTTACAAATTCAAGCTAATGTTGCTCATTTGCAGTTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACT</genome_strand>
        <mrna_strand>CTCTTCTCGTCTGCCCTAGCTTGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT......................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTATGACGACTAGCCAGATGAAGACCATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC...............................................................................................................AACTATCTATAACATGTGTACACAGAAGCCCCCTCACGATTACTCTCAGCAGCTATATGAGAAATACAAGGAAGCCTTTGAAGAATACATCAATTCTACA..................................................................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACGATGAGTTTATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGATCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG............................................................................................................................GTTTATCAGGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCACTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAGCAGATTGATAGAGCGTTATTGAAGAACGTGCTAGGCATATTTGTTGAAATTGGAATGGGGGAGATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGAT-CAGCAGCGTATTATTCTCG-AAAGCATCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447186" ref_strand="+" ref_description="SGN-E447186 [cSTA-25-K21]">
      <seq>gtcttctcttctcgtctgccctgtcttgctcgctcttcttccgcgatctcctcgtgttttctgcaaccaaactgcttttgtgtttatgaagaccatcgagctggaggaagaatggaactccatgcagaagggaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagctccgatgagtactcaagactctacaatactatctataacatgtgtacacagaagcccccgcaggattactctcagcagctatatgagaaatacaaggaaacctttgaagaatacatcaattctacagttctatcttctttgagagagaagcacgatgagtttatgctgagggagctcgtgaaaagatgggaaaatcataaacttatggtcaggtggctttcactgttcttccattatcttgatcggtattttattcctcgaaagtcactcccttcacttaatgaagttggtctgacgtgcttccgcgatttggtttatcaagagttgaaaagtaaagctagagatgcagttatagcactgattgatcaagaacgtgagggtgagcagattgatagagagttattgaagaacgtgctaggcatatttgttgaaattggaatgggggaggaggagttctatgaaaatgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79092" stop="76863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78798" g_stop="78723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78722" i_stop="78350" i_length="373">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78349" g_stop="78219" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="207" r_length="131" r_score="0.863"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78107" g_stop="78008" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="307" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290">
            <donor d_prob="0.285" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77717" g_stop="77532" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="493" r_length="186" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="541" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77272" g_stop="77163" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="651" r_length="110" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E447186" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78798" e_stop="78723"/>
          <exon e_start="78349" e_stop="78219"/>
          <exon e_start="78107" e_stop="78008"/>
          <exon e_start="77717" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCTGTACGTTTGTTTATGTTTCTCTCTTTCGTGTTTTTTTTCATCTCCAGAGCCCTTTTATCCATTCCGTCTCTATCTCTAATTCCATCCAAACCCTAACCCTATCGAATTGTAAATTAATGCTTAATTTTTTTTTCTGTAATATATATATATATATCCCGCTTTCATCCCATCCTGTTTATGATTGATTGGTGGTAGGAGTGTATGCTGCTTCTTTTGGGTTTTGGGGCCTAAGAATTCATTGTGATTTTTCTTAAATCAATTGCTCGCATATTGTAGTTTCATGTGAATGTGATCAATAGGTTGTTTCTCCGAGTGTGATTTGATTTTACAAATTCAAGCTAATGTTGCTCATTTGCAGTTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTT</genome_strand>
        <mrna_strand>GTCTTCTCTTCTCGTCTGCCCTGTCTTGCTCGCTCTTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT.....................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTATGAAGACCATCGAGCTGGAGGAAGAATGGAACTCCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGATGAGTACTCAAGACTCTACAA...............................................................................................................TACTATCTATAACATGTGTACACAGAAGCCCCCGCAGGATTACTCTCAGCAGCTATATGAGAAATACAAGGAAACCTTTGAAGAATACATCAATTCTACA..................................................................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACGATGAGTTTATGCTGAGGGAGCTCGTGAAAAGATGGGAAAATCATAAACTTATGGTCAGGTGGCTTTCACTGTTCTTCCATTATCTTGATCGGTATTTTATTCCTCGAAAGTCACTCCCTTCACTTAATGAAGTTGGTCTGACGTGCTTCCGCGATTTG............................................................................................................................GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCACTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAGCAGATTGATAGAGAGTTATTGAAGAACGTGCTAGGCATATTTGTTGAAATTGGAATGGGGGAGGAGGAGTTCTATGAAAATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408294" ref_strand="+" ref_description="SGN-E408294 [PPI-10-P1]">
      <seq>ctcttctcgtctgccctatcttgctcgctccccttccgcgatctcttcgtgttttctgcaaccaaactgcttttgtgtttatgaagaccatcgagctggaggaaggatggaacttcatgcagaagggaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagctccgatgagtacttaatactctacaatactgtctataacatgtgtacacagaagcccccgcacgattactctcagcagctatatgagaaatacaaggaaacctttgaagaatacatcaattctacagttctatcttctttgagagagaagcacaatgagtttatgctgagggagctcgtgaaaagatgggaaaatcataaatttatggtcaggtggctttcacggttcttccattatcttgatcggtattttattgctcgaaggtcactccctgcacttaatgaagttggtctgacgtgcttccgtgatttggtttatcaaaagttgaaaagtaaagctagagatgcagttatagcactgattgatcaagaacgtgagggtgagcatattgatagagtgttattgaagaacgtgctatgcatacttgttgaaattggattgggggagatggagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79092" stop="76877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78793" g_stop="78723" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78722" i_stop="78350" i_length="373">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78349" g_stop="78219" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="202" r_length="131" r_score="0.893"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78107" g_stop="78008" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="302" r_length="100" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290">
            <donor d_prob="0.285" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77717" g_stop="77532" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="488" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="536" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77272" g_stop="77177" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="632" r_length="96" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E408294" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78793" e_stop="78723"/>
          <exon e_start="78349" e_stop="78219"/>
          <exon e_start="78107" e_stop="78008"/>
          <exon e_start="77717" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCTGTACGTTTGTTTATGTTTCTCTCTTTCGTGTTTTTTTTCATCTCCAGAGCCCTTTTATCCATTCCGTCTCTATCTCTAATTCCATCCAAACCCTAACCCTATCGAATTGTAAATTAATGCTTAATTTTTTTTTCTGTAATATATATATATATATCCCGCTTTCATCCCATCCTGTTTATGATTGATTGGTGGTAGGAGTGTATGCTGCTTCTTTTGGGTTTTGGGGCCTAAGAATTCATTGTGATTTTTCTTAAATCAATTGCTCGCATATTGTAGTTTCATGTGAATGTGATCAATAGGTTGTTTCTCCGAGTGTGATTTGATTTTACAAATTCAAGCTAATGTTGCTCATTTGCAGTTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTC</genome_strand>
        <mrna_strand>CTCTTCTCGTCTGCCCTATCTTGCTCGCTCCCCTTCCGCGATCTCTTCGTGTTTTCTGCAACCAAACTGCT.....................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTATGAAGACCATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGATGAGTACTTAATACTCTACAA...............................................................................................................TACTGTCTATAACATGTGTACACAGAAGCCCCCGCACGATTACTCTCAGCAGCTATATGAGAAATACAAGGAAACCTTTGAAGAATACATCAATTCTACA..................................................................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACAATGAGTTTATGCTGAGGGAGCTCGTGAAAAGATGGGAAAATCATAAATTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG............................................................................................................................GTTTATCAAAAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCACTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAGCATATTGATAGAGTGTTATTGAAGAACGTGCTATGCATACTTGTTGAAATTGGATTGGGGGAGATGGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724126" ref_strand="+" ref_description="SGN-E724126 [FC23AE11]">
      <seq>aaaataaataaataaaaaatagtaagagtatattttgcaagttcttctcgtctgccctagctcgctcgctcctcttccgcgatctcctcgtgttttctgcaaccaaactgcttttgtgtttatgacgactagccagatgaagacaatcgagctggaggaaggatggaacttcatgcagaagggaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagctccgaagagtacatgatgctctacacaactatgtataacatgtgtacacagaagccccctcatgattactctcagcagttatatgagaaatacaaggaagcctttgaagagtacatcaattctacagtaagaaccattggcttgaaatttctcttagcttctcacagggttgaaggttctatcttctttgagagagaagcacgacgagttcatgctgagggagctcgtgaaaagatgggcaaatcataaacttatggtcaggtggctttcacggttcttccattatcttgatcggtattttattgctcgaaggtcactccctgcacttaatgaagttggtctgacgtgcttccgtgatttggtttatcaagagttgaaaagtaaagctagagatgcagttatagcgctgattgatcaagaacgtgagggtgaacagattgatagagccttattaaagaacgtgctaggtatatttgttgaaattgggatgggggaaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79134" stop="76880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78834" g_stop="78723" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78722" i_stop="78365" i_length="358">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78364" g_stop="78219" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="258" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78107" g_stop="77959" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="407" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77958" i_stop="77718" i_length="241">
            <donor d_prob="0.571" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77717" g_stop="77532" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="593" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="641" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77272" g_stop="77180" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="734" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E724126" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78834" e_stop="78723"/>
          <exon e_start="78364" e_stop="78219"/>
          <exon e_start="78107" e_stop="77959"/>
          <exon e_start="77717" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAATAAATAAAAAATAGTAAGAGTATATTTTGCAAGTTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCTGTACGTTTGTTTATGTTTCTCTCTTTCGTGTTTTTTTTCATCTCCAGAGCCCTTTTATCCATTCCGTCTCTATCTCTAATTCCATCCAAACCCTAACCCTATCGAATTGTAAATTAATGCTTAATTTTTTTTTCTGTAATATATATATATATATCCCGCTTTCATCCCATCCTGTTTATGATTGATTGGTGGTAGGAGTGTATGCTGCTTCTTTTGGGTTTTGGGGCCTAAGAATTCATTGTGATTTTTCTTAAATCAATTGCTCGCATATTGTAGTTTCATGTGAATGTGATCAATAGGTTGTTTCTCCGAGTGTGATTTGATTTTACAAATTCAAGCTAATGTTGCTCATTTGCAGTTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAG</genome_strand>
        <mrna_strand>AAAATAAATAAATAAAAAATAGTAAGAGTATATTTTGCAAGTTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT......................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC...............................................................................................................AACTATGTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAG.................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG............................................................................................................................GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTG.......................................................................................ATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572797" ref_strand="+" ref_description="SGN-E572797 [32006]">
      <seq>cgatctccttcgtgtttctgcaaccaaactgcttttgtgtttatgacgactagccagatgaagaccatcgagctggaggaaggatggaacttcatgcagaagtgaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagctccgaagagtacatgatgctctacacaactatctataacatgtgtacacagaagccccctcacgattactctcagcagctatatgagaaatacaaggaagccgtttgaagaatacatcaattctacagttctatcttctttgagagagaagcacgatgagtttatgctgagggagctcgtgaaaagatgggcaaatcataaacttatggtcaggtggctttcacggttcttccattatcttgatcggtattttattgctcgaaggtcactccctgcacttaatgaaggttggtctgacgtgcttccgtgcatttggtttatcaaggagttgaaaaagtaaaggtagagatgcagttatagcactgattgatcaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79055" stop="77060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78755" g_stop="78723" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78722" i_stop="78365" i_length="358">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78364" g_stop="78219" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="179" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78107" g_stop="78008" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="280" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290">
            <donor d_prob="0.285" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77717" g_stop="77532" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="468" r_length="188" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="518" r_length="50" r_score="0.875"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77272" g_stop="77261" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="531" r_length="13" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E572797" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78755" e_stop="78723"/>
          <exon e_start="78364" e_stop="78219"/>
          <exon e_start="78107" e_stop="78008"/>
          <exon e_start="77717" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTCC-TCGTGTTTTCTGCAACCAAACTGCTGTACGTTTGTTTATGTTTCTCTCTTTCGTGTTTTTTTTCATCTCCAGAGCCCTTTTATCCATTCCGTCTCTATCTCTAATTCCATCCAAACCCTAACCCTATCGAATTGTAAATTAATGCTTAATTTTTTTTTCTGTAATATATATATATATATCCCGCTTTCATCCCATCCTGTTTATGATTGATTGGTGGTAGGAGTGTATGCTGCTTCTTTTGGGTTTTGGGGCCTAAGAATTCATTGTGATTTTTCTTAAATCAATTGCTCGCATATTGTAGTTTCATGTGAATGTGATCAATAGGTTGTTTCTCCGAGTGTGATTTGATTTTACAAATTCAAGCTAATGTTGCTCATTTGCAGTTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCC-TTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAA-GTTGGTCTGACGTGCTTCCGTG-ATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAA-GAGTTG-AAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGATC-AAGAA</genome_strand>
        <mrna_strand>CGATCTCCTTCGTG-TTTCTGCAACCAAACTGCT......................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTATGACGACTAGCCAGATGAAGACCATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGTGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC...............................................................................................................AACTATCTATAACATGTGTACACAGAAGCCCCCTCACGATTACTCTCAGCAGCTATATGAGAAATACAAGGAAGCCGTTTGAAGAATACATCAATTCTACA..................................................................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACGATGAGTTTATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGGTTGGTCTGACGTGCTTCCGTGCATTTG............................................................................................................................GTTTATCAAGGAGTTGAAAAAGTAAAGGTAGAGATGCAGTTATAGCACTG.......................................................................................ATTGATCAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480738" ref_strand="+" ref_description="SGN-E480738 [cSTD-15-I5]">
      <seq>tttttgcttacttaaaaaatattctttctgattccttatccttttgtgtttatggagaccatcgagctggaggaaggatggaacttcatgcagaagggaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagcgtaaaagagtacatgatgctctacgcaactatctataacatgtgtacacagaagcccccgcacaattactctcagcagctatatgagaaatacaaggaagcctttgaagaatacatcaattctacagttctatcttctttgagagagaagcacaatgagtttatgctaagggagctcgtgaaaagatgggaaaatcataaagttatggtcaggtggctttcacgggtcttccattttcttgatcggtattttattgctcgaaagtcactccctgcacttaatgaagttggtctgacgtgcttccatgatttggtttatcaagagttgaaaagtaaagctagagatgcagttatagcactgattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78640" stop="77060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78344" g_stop="78219" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="173" r_length="126" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78107" g_stop="78008" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="273" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290">
            <donor d_prob="0.285" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77717" g_stop="77532" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="459" r_length="186" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77407" g_stop="77360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="507" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77272" g_stop="77267" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="513" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E480738" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78344" e_stop="78219"/>
          <exon e_start="78107" e_stop="78008"/>
          <exon e_start="77717" e_stop="77532"/>
          <exon e_start="77407" e_stop="77360"/>
          <exon e_start="77272" e_stop="77267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTGGTTAGTCATTAGCATTTCTATGTTATATTATCTTGCATATCTGTTATCATTCAACCTATAGGAATAAATACTCTTTATGCTGTTGTTGTGTATGATATTTTACATTTTTGATTGTTGATAATAGGTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTGGCAAGTCTAATGCTTTCTTTATTTGACCCAATTTTGTATCATACTATGCGCCAAGAATAAGAATCGGTGATAATCCTTTTTTATCAGATTGAT</genome_strand>
        <mrna_strand>GTTTATGGAGACCATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCGTAAAAGAGTACATGATGCTCTACGC...............................................................................................................AACTATCTATAACATGTGTACACAGAAGCCCCCGCACAATTACTCTCAGCAGCTATATGAGAAATACAAGGAAGCCTTTGAAGAATACATCAATTCTACA..................................................................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACAATGAGTTTATGCTAAGGGAGCTCGTGAAAAGATGGGAAAATCATAAAGTTATGGTCAGGTGGCTTTCACGGGTCTTCCATTTTCTTGATCGGTATTTTATTGCTCGAAAGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCATGATTTG............................................................................................................................GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCACTG.......................................................................................ATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479621" ref_strand="+" ref_description="SGN-E479621 [cSTD-10-N9]">
      <seq>cttgctcgctcctcttccgcgatctcctcgtgttttctgcaaccaaactgcttttgtgtttatgacgactagccagatgaagaccatcgagctggaggaaggatggaacttcatgcagaagggaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagctccgaagagtacatgatgctctacacaactatctataacatgtgtacacagaagccccctcacgattactctcagcagctatatgagaaatacaaggaagcctttgaagaatacatcaattctacagttctatcttctttgagagagaagcacgatgagtttatgctgagggagctcgtgaaaagatgggcaaatcataaacttatggtcaggtggctttcacggttcttccattatcttgatcggtattatattgctcgaagatcactccctgcacttaatgaagttggtctgacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79074" stop="77244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78774" g_stop="78723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78722" i_stop="78365" i_length="358">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.880" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78364" g_stop="78219" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="198" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78107" g_stop="78008" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="298" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290">
            <donor d_prob="0.285" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77717" g_stop="77544" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="472" r_length="174" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E479621" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78774" e_stop="78723"/>
          <exon e_start="78364" e_stop="78219"/>
          <exon e_start="78107" e_stop="78008"/>
          <exon e_start="77717" e_stop="77544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCTGTACGTTTGTTTATGTTTCTCTCTTTCGTGTTTTTTTTCATCTCCAGAGCCCTTTTATCCATTCCGTCTCTATCTCTAATTCCATCCAAACCCTAACCCTATCGAATTGTAAATTAATGCTTAATTTTTTTTTCTGTAATATATATATATATATCCCGCTTTCATCCCATCCTGTTTATGATTGATTGGTGGTAGGAGTGTATGCTGCTTCTTTTGGGTTTTGGGGCCTAAGAATTCATTGTGATTTTTCTTAAATCAATTGCTCGCATATTGTAGTTTCATGTGAATGTGATCAATAGGTTGTTTCTCCGAGTGTGATTTGATTTTACAAATTCAAGCTAATGTTGCTCATTTGCAGTTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGC</genome_strand>
        <mrna_strand>CTTGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT......................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTATGACGACTAGCCAGATGAAGACCATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC...............................................................................................................AACTATCTATAACATGTGTACACAGAAGCCCCCTCACGATTACTCTCAGCAGCTATATGAGAAATACAAGGAAGCCTTTGAAGAATACATCAATTCTACA..................................................................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACGATGAGTTTATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTATATTGCTCGAAGATCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338205" ref_strand="+" ref_description="SGN-E338205 [cTOE-13-L8]">
      <seq>tgcttttgtgtttatgacgactagccagatgaagacaatcgagctggaggaaggatggaacttcatgcagaagggaatcacaaaattaaagaaaatcttagaaggccatccagattcattcagctccgaagagtacatgatgctctacacaactatctataacatgtgtacacagaagccccctcatgattactctcagcagttatatgagaaatacaaggaagcctttgaagagtacatcaattctacagttctatcttctttgagagagaagcacgacgagttcatgctgagggagctcgtgaaaagatgggcaaatcataaacttatggtcaggtggctttcacggttcttccattatcttgatcggtattttattgctcgaaggtcactccctgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="-" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78664" stop="77267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78364" g_stop="78219" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="150" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78107" g_stop="78008" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="250" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290">
            <donor d_prob="0.285" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77717" g_stop="77567" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="401" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="-" ref_id="SGN-E338205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78364" e_stop="78219"/>
          <exon e_start="78107" e_stop="78008"/>
          <exon e_start="77717" e_stop="77567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACACGTATCCATAACATTCTTTTTTTTCTAGATTACTATGTTTTTTGCTTTCACCCTTTCCATTTCCCCTCTTTTTGGTTGGCATTCCTTTTTGTATTATCCTTAATAAGAATAGAACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAGGTTTGTTGATGACATCAGTGGCACACTTGATTTTTATCAACTTGTAACCCACTAAGTGGTTAAATGTTCCCATGACAATTTTCACAAAATTCAGAATTTGTTAAACATATGTATAGTCTATGTTATTGAGATGGTTTATTTAGTGGTACTAACTTAATACTTCATTAACCAACTCAAACTCACATGTAGTGAGAGCATCCTCATTGCTCAAGTTTCCCATATGTGTTTGTATTTTTTTTAGGTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCAC</genome_strand>
        <mrna_strand>TTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC...............................................................................................................AACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACA..................................................................................................................................................................................................................................................................................................GTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603884" ref_strand="+" ref_description="SGN-E603884 [67073]">
      <seq>caatcattcaccttctcccctttctctctcatcctcccttctctctacacatccatttatccattttctgtagttctctttggatctgatagacggggaacatggtcgaaaccagacgaagctcctcttcttccaaacgacctctctcttctccttcctctcctctccctaatggcaagcgctccaaggctgtggaggcgttgtcatcaactaatgataccatagggcagaaaacacagggtgccgtgaatgaatcaggacaggaatctgctgagcaagaggttcgatcggttgatctggctggtgctagtgttttgaagtcatcggatgcttctctgccactaaaatcaccggaaaatcaagtgcaaggcgagcctttggtatcacccatcactctaggtcatacagtgattgatgcggagaaggtaaagttaaatgggtcgacattgaatagggggaagaagcggcagctgaaatctaatgttggggttgcatggggaaagcttatttcccagtgctctcaaaatcctcacgttgtcatgcatcgtcccacatattctgttggtcaaggtcgtcaatgtgactttcggataggagacccttctgttagcaaatctctatgtaatctgaagcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84734" stop="89975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85084" g_stop="85213" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="188" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85214" i_stop="85307" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85308" g_stop="85518" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="399" r_length="211" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85519" i_stop="85615" i_length="97">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85616" g_stop="85740" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="524" r_length="125" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85741" i_stop="89562" i_length="3822">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89563" g_stop="89675" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="637" r_length="113" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E603884" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85084" e_stop="85213"/>
          <exon e_start="85308" e_stop="85518"/>
          <exon e_start="85616" e_stop="85740"/>
          <exon e_start="89563" e_stop="89675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTTTCTGTAATTCTCTTTGGATCTGATTTACGGGGAACATGGTCGAAACCAGACGAGGCTCCTCTTCTTCCAAACGACCTCTCTCTTCTCCTTCCTCTCCTCTCCCTAATGGCAAGCGCTCCAAGGTTCGGATTTGATGATATCTGTTGATGCATCCATACCACATGTTTGCATGTAGCTGCAATTTTTTTTTTTTGATTTATTTGATCGGCTTTGTAGGCTGTGGAGGCGTTGTCATCAACTAATGATACCATAGGGCAGAAAACACAGGGTGCTGTGAATGAATCAGGACAGGAATCTGCTGAGCAAGAGGTACGATCGGCTGATCTGTCTGGTGCTAGTGTTTTGAAGTCATCGGATGCTTCTCTGCCACTAAAATCACCGGAAAATCAAGTGAAAGGCGAGCCTTTGGTATCACCCATCACTTTAGGTGCGCTTTTATCCTTGCATGTTCTTTGACTTTATCAAAAGTCGGATCTTTTTGCGTAATTTGTTTGGTTAATTGAGGCTTTCTGAACTTCTTCTAGGTCATTCGGTGATTAATGCTGAGAAGGTAAAGTTGAATGGATCGACATTGAATAGGGGTAAGAAGCGGCAGCTGAAATCTAATGTTGGGGCTGCATGGGGAAAGCTTATTTCCCAGTGCTCTCAAGTAGGTTTCTCTTCTTACACTTTCCATGATAATCTTTGAGCCTTTTTTCTGGGAAAAGTAGCATGAGAACAAGAAGTGAAGATAAAATTTTTGAAAATATGTAGCCTTTTTGGTCAAATTTGATACCTAAATGATCTCTGCTTGCACTGACACAGCCACTCTCCCACCATGGAACAAGGGAGGAAAATTTAAGAGAGGAAAAAGAATTTAAATACTTAATCTGTGCAGAGCTATTATAAATACAAAACATTTAAATTTGCATCCATTCCCGCTTGGATTTCATAGTTCTCAATGTTTTTTAAGTGTTTAATAGTGTGAATACAGTTACCCAGTATGTTATGTTTGTTTTTTTAAGAAAAGAACATGGAAAACTTATATCCAACATTGGTTGCATGCAACTGTAATAAGGTTTTTTGCGAACATATCTCTCTAACAAGTTCGTAACTCTTTGTTACAATGAAATTAGACCAGAATAACCGCTCAATCACAATCTGTAGTGAAAAGGGACAGTACCCAGGGGAGTATATAAAGGTTTCTTCTTGTGTGCTGTGGTCCCTGGGCCAGTTTGCACAGGTCGACTAATTCTAGGGGTACCTGCTGCCTCCTACCAGCACAAGTGTTGGGTAACTCTGTCCACAAAAGCTTGGACACATAGGAAGGACTCACCTAGGCCTCATGATTCTCAACCCACTTCATTGACCACGATGACACACCCAGGGGTGTGTCTATAGACGTCATTCTCAGACTCTGTTGACGAAATCCCAATTATACATCAAATCAGCCTCAATGGTACATCATATGCAATGGTTAATTACACCTTTGATTTAGGAGTTCGAACCAAACACAACTATAATTGAAATCAGCCACCTCACTTAATGGTGCCCTTGGAGGCAATTCATCAACTGGAAACTCCAGTCTCGGTGAATCGGTGAAGATAAACTGTTGGGATGTAGCGTCTTTCAGTTGAAAGGTAAAAAGGCAAAAATGGTCCCTGATGGTCCAAAGACAAAGCATACAGGATTGGGCACTGCTGCGCTTTTTGAGCCTCCATCTAATTTTGGTCTCAGGAGAAAGGACCTCAATCATCTAAATTATTCAGGGGCATAATAGGCTAGAGGAGGAAGAAGTGAACTATGGAAATGGAGTGACATAGTTCTTTCTTGCCTACTTATATTTTATATTTTTATTTTTTGTGTAATGTTGATGTCTTAGTTATTTAATCTGCTGGAGTTTCTACATAAAATATTTGTGGAATTAGCCTTGTCGTCTTCAAGTCCAACGAGCCAAACTGAAAAATTCAGACTTCTGTCGGGTATTCAGTCTCACCATTTCAAGTTTGACCTGTATGGAGAAAATTATGGCTTCTCGTTTCTGCTATCCACATTCTTAATGCTCAGCTAGTGCGATATTGACTTTGTATATCAACCGTCCTTCACCGTTGTTCATATTGAATTTAGATATGTATTCCAAGTCCATTTTGAGCTTTATTGGTAAGATCTCTGTGTTTACACACCTAAATCCATAAAATTTCTTTACCTAGGAGTTTGGAGAATTTAAAGGTTAAATGAAGAAGTTAAGAGTCAATTAACTTGATTTTTCTTTAAACTATACATCTTAGTTTTTGTTAGATGTCTATTCAATTGGAGATATCCTCTTACCGTGGTCTTATTCCACTGTCAAGTGTGCTTATGTTGGAGCTATAATTGGTGATCTACTGGACGCCTGGAGATGTGTTTGTACACTAGTACCTTGAGGACTTTTATTTCATCAAAAAAAAACTATTACCCTGAGAATCTTTTGAGCAATTACTATAAAATAAACTGTTCCCATGATTAAGATGAGCTAGATATTGCACTCATAAATTAGTCATCTTGCATATGCCTCCATCAAATAGTGTGCACTCTGTAAACATTGTTTACCCTGGTATTCTATGAAATTTATAGTAAAAGGAAAATCCGCCGACTTTAAACATCGTGAGGGTTCAAGTCCCTCTATCCCTCTGAGGCTGCTCAATATACCTATGCAAGAGACGGAAGACGGACTTGGGATCTCCAGGGTGTTGCTCTCATGCCTCAACTTCCATTTCCTTGGGACTACAGAAAACCTTACAAAAAGAAATGACTTTCTATAAATGACCTTGCAAATGCACAAAAAAGAAATGAGGGATCAGAAACTATATCTGAAGCACACAATCCTTCTCTATTCCATTAAAAGCTCTCCTATTTTTCTCTTTCCACACTGTACACTGAAGTGCCAAGTGCTAGTGGAGCAACTTCCCACGCCTTGTGTCTTCTCCTCTGCCTTTTAAGCGTCCAACTAAGCAATACTTCTTTGATCATGCCCTGTATCACTCATTGAAGAACAAACCAACATAGTATTTTCCACAACAATCAAGTCACTATCGACAATGTAGAAGAAGACAAATCACGTCTTCACTCGAGCTCTTAAGACATGAAGTACCTATTAACACATGTAATCCTCCTCTTTCTCAGGTTCTCAATTGTCAAAATCACCCCCTTCGTAGCTATCAGGTGAAGAAACAAACCCTTCTTGGAACCCCAGAAAAGTGTGCTCCTCCATGCCCAACAGATTGTAGAATTTCGCAGAAAACACACCAGTTTTCCATGCTCCCTTTTCCATACCTCATTGAGTATAATATTTTCTGACGAGTACGGACATTAATGCGTTGAGAATTTTTTTTGTGAATAACGAAGTTTGTAGTGATAAAAAGCATTGACCTTTTTTTGTGCGTACCTCGATTTGCAGGCTTTTACATGTTAACTTATGTCATTATATGGTGGTGTATTCCTTAGCCTGTGCTTACATCATATGGACGCTGCAAGGATCATTTTTATCTTTGCACCAAGGTCTATGTATAGAGAATTCCCTTTAATGATAAACAAAGCTCTATAGAATATATATAGTGGATTGCTTTGTTATAAATAGAAACAGACCCCTACAACAAGATGGTATTGGGAACAGGAAAGGACAGTCTGGAATCTGGAAAAGCCTTGGTACAAAAGATTATAATTTTGAAGCAATCTAATGAAATCTATCATCTTATGTATTTCATGTACAGTCTGGAAACCGAAAATGTAACAAATAAAGTCTATATTTCATCTCCTCTCCAGTGGTAGTTTTGCCTTCAATTTTTTAAGAATAAAATATTTTTTATATAGGAGGCCTATATGTTATTTTAGATAAGAAGATCTGTAACCTTCACAAAATCATAAATATGTGAAGGGCGATGTTGTCATGTGTTATGGATGTTTGGATTTAAAATAAAATAAATTATCAAGAAAATGGTTGGGTGGTATTGGATGCATGTTGAAGGATGTTGACGTTGGACTGACGATGACTTAGATTTGGTGTCCATGCTTCCTATGTCTCAATTCAACTTAATTCCTGGGCACAACCGTAAAACTGCCCCCAATTCAATTGGTTGTGGTTAAAATTAAGGTGGCACTTAGATTGGAATATTTTTCCCCAAGGGAAGTGTTTGGTTTGATGAATAATCGTATTTGTGAGAAAATAATCCAAAAAGTTATTCAGGAGATCACAAAAATATATTTTTGAGTTGCTTTTTTTAAAATTTTGGTTCAGAAGCTGTCTATTCTGTAAAACAATTCAACCATAAATTTTTCTACCACTTTTTTTGAGAAACAAACCAGAGAACTTCCCAATACCGAGATTTGCCAATAGGAAACGAACAGTCTATCAAATAAATAATAGTGCACATAAATGTGAACTGTTTATTTTTACTTGCTTAATTGTTTACCTTCTATAATTAACTCACTAGTTGACTTTCATTTGTTTTTGCAGAATCCTCACGTTGTCATGCATCATCCCACATATTCTGTTGGTCAAGGTCGTCAATGTGACTTGTGGATAGGAGACCCTTCTGTTAGCAAATCTTTATGTAATCTGAAGCACAT</genome_strand>
        <mrna_strand>ATCCATTTTCTGTAGTTCTCTTTGGATCTGATAGACGGGGAACATGGTCGAAACCAGACGAAGCTCCTCTTCTTCCAAACGACCTCTCTCTTCTCCTTCCTCTCCTCTCCCTAATGGCAAGCGCTCCAAG..............................................................................................GCTGTGGAGGCGTTGTCATCAACTAATGATACCATAGGGCAGAAAACACAGGGTGCCGTGAATGAATCAGGACAGGAATCTGCTGAGCAAGAGGTTCGATCGGTTGATCTGGCTGGTGCTAGTGTTTTGAAGTCATCGGATGCTTCTCTGCCACTAAAATCACCGGAAAATCAAGTGCAAGGCGAGCCTTTGGTATCACCCATCACTCTAG.................................................................................................GTCATACAGTGATTGATGCGGAGAAGGTAAAGTTAAATGGGTCGACATTGAATAGGGGGAAGAAGCGGCAGCTGAAATCTAATGTTGGGGTTGCATGGGGAAAGCTTATTTCCCAGTGCTCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTCACGTTGTCATGCATCGTCCCACATATTCTGTTGGTCAAGGTCGTCAATGTGACTTTCGGATAGGAGACCCTTCTGTTAGCAAATCTCTATGTAATCTGAAGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314709" ref_strand="+" ref_description="SGN-E314709 [cTOA-20-I19]">
      <seq>aattactcagagatcttgacccgccaattttgacatcaaccaggcgccaagcttttaaagatgcattacaacaaggaatacttgattcaaaaagtattgaggtctcgtttgaaaattttccgtactatttgagtgaaaccacgaagaatgttctgatttcttccacttacgttcatttgaagtgtcacaaattcataaaatatgcacctgatctccccacgttgtgccctaggattttgttatcaggtccagcaggttcagaaatctatcaggagacattggccaaggctcttgcaaaatactttggtgtcaggctactgatagttgattctcttttactgcctggtgggtcaattgccaaagacattgactctgtgaaggaaagttcaaagcctgagagagcaagtgtctttgctaaacgtgctgcccaggtggctgcactacaccttaataagaagccagcttcaagtgttgaggctgatataactgggggttctacagtaagttctcatgctcagcctaagcaggaggcatctactgcatcatccaaaaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90318" stop="94383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90618" g_stop="90750" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90751" i_stop="91501" i_length="751">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91502" g_stop="91623" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="255" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91624" i_stop="91718" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91719" g_stop="91810" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="347" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91811" i_stop="93873" i_length="2063">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93874" g_stop="94083" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="557" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E314709" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90618" e_stop="90750"/>
          <exon e_start="91502" e_stop="91623"/>
          <exon e_start="91719" e_stop="91810"/>
          <exon e_start="93874" e_stop="94083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACTCAGAGATCTTGACCCGCCAATTTTGACATCAACCAGGCGCCAAGCTTTTAAAGATGCATTACAACAAGGAATACTTGATTCAAAAAGTATTGAGGTCTCGTTTGAAAATTTTCCGTACTATTTGAGGTGAGCACGTTGATCTCAAGCAATAAATAATCTTCTGTCATTCTTTTTGTTGTTCTCCAAATATTTGATGCACTTTTTTGGTGCTTTTCCTTTCAATTGTTTCGGTAACTTCAAGTGTTGTTATGAGGGTGACTGGAGTTGATCTTTCACCAGTCAGAAAAAGTATGAATGGAGTTTTTCATATTGCTAATAATAAGAAAAAGTATGAATGGAGTTCTGATTTTACTAATTCTGTATTATTATTTATCAGTTGGAGTTATGTATTTATCATTTTTCTTTCCTAGTTATGATTGATATGCATATGATTGTCTCTCTTTAGATATGCAATTTCCTAGATAATATGTGCATGCTATTACTGTTTCCTCATATTGCATCATAGGTAAACAAATAAAAAGAGAATCCAAGCTTAGTTTGTTTATCTTGGGATTTTACTCTTTTTTTGAACTTCATTACACTTTAGACTAACTTCTTTTTATTCTTAATGTTCTTGTATGTTGAACTTGGTGTAGTGTTCATCGTTGCTATAGAGCACTCATATCTTCTATGAACTCCGTTACTTTGTGTTGCAGCCTGTAATTTTTCATTTTTGAGTCCTGGATTTGTCTTTTGAGTTTTTCAGTAGTACCTGTGTGTCGTTTTTCTCCTTTTTTTTTTATATGTTGCTGGTGTCTAGTGCTAGATGCAGGATGTCCCAAATGTACTGGTGGAATTTATTTTACTGAGTTCTCTCTTTTTTCATGATCCATGACAGTGAAACCACGAAGAATGTTCTGATTTCTTCCACTTACGTTCATTTGAAGTGTCACAAATTCATAAAATATGCACCTGATCTCCCCACGTTGTGCCCTAGGATTTTGTTATCAGGTCCAGCAGGTAGTATTTGTATTTTGGATGTTTTACAGTAATCACTATTCGATATGTTCAATTTAGTCAATAATATTATATTTTTGATCGGTGCTTGCTCACAGGTTCAGAAATCTATCAGGAGACATTGGCCAAGGCTCTTGCAAAATACTTTGGTGTCAGGCTACTGATAGTTGATTCTCTTTTACTGCCTGGTGTAAGCCTTATATTTACCTAACTTGTATTGCTGTTTTTGTATGCTCTTTTTCATGAAACACAATAAATTTATTGAAAGCTGTAAGGGACATCTGCGCCAAGCTAATTGATCCTCACAAGAGAAAAGATAGGAACAAATTAGTATCTATCTTGTAGGTCAAGAACATCATGAATCTTCACTCAGTTGCAATGCTATAAGCTCAGTTGATTGTGTTTATATAACATCGGCATTGCCATTGTTTCACCCCCTTGGTTCTAGCGTTCAACAGATTGTTGTGTCACCATAAATGCTTGTGGATGACTGTTACTTATATATATATATATATATATATATATTTCTACCATGTATAATTATTTTTCTCTTATTTGATCGTTGTAGAAATAACATGGTTTGTTACTGTTCCTTTTATACATCTTGGTTAAAAAAAATAGTGTTCCTTTTATACATCTTGATAAAAAAATTTAGCTTTCCTTTTATGCATATATTGTGCTGCTGATTTCAACAGTATACCCAAGTATAGTCCTACAATTGGGGTTTGCGGGGGTGATGCGTATGCAACCTTACCTATACCCTGTGAAGTTGGAGAGATTGTTTTGGATAGACCCTCAGCTCAAGGAAAGCATATAAAAAACAAGTGTCTAAAGCAAATATAGTAGCGAAGAGCCATGCTGAAAACAATGGAAGAGAGAATTGTAGCAGCAGCAAATAATATAATAACTACAAATAATACAATAACTACAAGTAATACTAAGATTGAAGAATAAGATAGTAAGAAAGTACTAATAACAACATTGGGAAGGAACCTAGACAACACCCAATTACCTATTAACCTTCAACCCAATCCTCGTCCTCCATATCTTTCTATCTAGTGTCATGTCCTTGGTAAGCAGTAAGTGTGCCATGTCATAATCTAATCACCTCTCCCCAAGACTTCTTCGGCCATCCTCTACCTCTCCTAATACCCACTATAGCCACCCTCTCTTACCTGGGAATCTCTTCATCTTCTCTTCACATGCTCGAACCATCCCAGTTTTACCTCCCTCATCTTATCCATCATGGAGGTCACTCCCACCTTATTCGGGATCCTATCTCTCATGGTATATCCACACATCAATCCTGACATTCTCATTTCCGCTACTCTCAACTTCTGAATGTGCGAGTTCTTGACCGGCCAACACTCCTCCCCATACAATATAGCTGATCTTACCACCATATTATAAATCTTGATTTTAAGACTTGGTGGTACATGCTTATCACACAAGACATCAGACGTGAGCATTCACCCCGCACCAATACGATGTTTAGCATCATAGCAATCTCCCCATTTTCTTGATTATTGATTCTTTCTTGGAGATTACTTGTGTAGCAATCCCTACTTCCACATCTGCCACATGATTTATGTCGTTGAACTTGTACTCCAAATACTCTGTTTTAGTCCTGCTCGACCTCAGCCCTTTAGACTCCCGGGTTTGTCTCCAAACCTCCAAATTTGCTGCTGATTTCAAAATACATATATTTTTACTACTGCTTAAAACTAATGGTCGTCTGCCCGTTTTCTTGTTTCTTGATCTTACTAACTGGGGAATGTGCAGGACGGCTTATAATCAGAAAATCCGCATATAACTATTTGTTATGAAAACGTTGCATGAGTTCATTGTCTCTACTATTGAAAATTTTCTCATCCCCTACTAATTGAGTTCATTGTTCAGGTTTTTCAAATGAATGAAGTTCTGATATCTTATGAATAAATTTTCAACATGTATGATATCTTATTAATAATTGATCCTCCATTTATTACTTTTTCTAGCCGTAGAAGCAGAATATTGATGTTTTATGTGAGGGAAATAACTAAAAAGTCACAGTTAGTATAACTTGAAAGTCAATTTCACTTGAAGAATGTTTACTTTTTTCACTTGTCCTGCAGTCGAACTAGTTGAGTATATATTGGGGTGTTAAGTGAAACTGAGAAGGGTGGACACTAAACTATGTATATTTTTTTCTGTTTGGGAGGCAGTTTCAATCACTGAATCCTGCAATTCATGATTTTCTCGAACATCATGCAGGGGTCAATTGCCAAAGACATTGACTCTGTGAAGGAAAGTTCAAAGCCTGAGAGAGCAAGTGTCTTTGCTAAACGTGCTGCCCAGGTGGCTGCACTACACCTTAATAAGAAGCCAGCTTCAAGTGTTGAGGCTGATATAACTGGTGGTTCTACAGTAAGTTCTCATGCTCAGCCTAAGCAGGAGGCATCTACTGCATCATCCAAAAACTAC</genome_strand>
        <mrna_strand>AATTACTCAGAGATCTTGACCCGCCAATTTTGACATCAACCAGGCGCCAAGCTTTTAAAGATGCATTACAACAAGGAATACTTGATTCAAAAAGTATTGAGGTCTCGTTTGAAAATTTTCCGTACTATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACCACGAAGAATGTTCTGATTTCTTCCACTTACGTTCATTTGAAGTGTCACAAATTCATAAAATATGCACCTGATCTCCCCACGTTGTGCCCTAGGATTTTGTTATCAGGTCCAGCAG...............................................................................................GTTCAGAAATCTATCAGGAGACATTGGCCAAGGCTCTTGCAAAATACTTTGGTGTCAGGCTACTGATAGTTGATTCTCTTTTACTGCCTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAATTGCCAAAGACATTGACTCTGTGAAGGAAAGTTCAAAGCCTGAGAGAGCAAGTGTCTTTGCTAAACGTGCTGCCCAGGTGGCTGCACTACACCTTAATAAGAAGCCAGCTTCAAGTGTTGAGGCTGATATAACTGGGGGTTCTACAGTAAGTTCTCATGCTCAGCCTAAGCAGGAGGCATCTACTGCATCATCCAAAAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560551" ref_strand="+" ref_description="SGN-E560551 [20222]">
      <seq>taacacgaagaatgtnctgatttcttccacttacgtacatttgaacctgtcacaaattcacaaaatatgcacctgatctccccacgttgtgccctaggattttgttatcaggtccagcaggttcagaaatctatcaggagacattggccaaggctcttgcaaaatactttggtgtcaggctactgatagttgattctcttttattgcctggtgggtcaattgccaaagacatttactctgtgaaggaaagttcaaagcctgagagagcaagtgtctttgctaaacgtgctgcccaagtggctgcactacaccttaataagaagccagcttcaagtgttgaggctgatataactggtggttctacagtaagttctcaagctcagcctaagcaggaggcatctactgcatcatccaaaaactacactttcaagaaaggtgacagagtgaagtatgttggtccgttacagtcaggcttttctcctttgcaagcacctttgaggggtccaacatatggttacaggcgcaaagtggttcttgcatttgaagataatgagtcctctaagattgggatcagctcgctagatcaattccacagggcaatgatcttggtggtcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91205" stop="95794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91505" g_stop="91623" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91624" i_stop="91718" i_length="95">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91719" g_stop="91810" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="212" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91811" i_stop="93873" i_length="2063">
            <donor d_prob="0.785" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93874" g_stop="94096" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="435" r_length="223" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94097" i_stop="94348" i_length="252">
            <donor d_prob="0.309" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94349" g_stop="94412" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="499" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94413" i_stop="95374" i_length="962">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95375" g_stop="95494" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="618" r_length="119" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E560551" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91505" e_stop="91623"/>
          <exon e_start="91719" e_stop="91810"/>
          <exon e_start="93874" e_stop="94096"/>
          <exon e_start="94349" e_stop="94412"/>
          <exon e_start="95375" e_stop="95494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACGAAGAATGTTCTGATTTCTTCCACTTACGTTCATTTGAA-GTGTCACAAATTCATAAAATATGCACCTGATCTCCCCACGTTGTGCCCTAGGATTTTGTTATCAGGTCCAGCAGGTAGTATTTGTATTTTGGATGTTTTACAGTAATCACTATTCGATATGTTCAATTTAGTCAATAATATTATATTTTTGATCGGTGCTTGCTCACAGGTTCAGAAATCTATCAGGAGACATTGGCCAAGGCTCTTGCAAAATACTTTGGTGTCAGGCTACTGATAGTTGATTCTCTTTTACTGCCTGGTGTAAGCCTTATATTTACCTAACTTGTATTGCTGTTTTTGTATGCTCTTTTTCATGAAACACAATAAATTTATTGAAAGCTGTAAGGGACATCTGCGCCAAGCTAATTGATCCTCACAAGAGAAAAGATAGGAACAAATTAGTATCTATCTTGTAGGTCAAGAACATCATGAATCTTCACTCAGTTGCAATGCTATAAGCTCAGTTGATTGTGTTTATATAACATCGGCATTGCCATTGTTTCACCCCCTTGGTTCTAGCGTTCAACAGATTGTTGTGTCACCATAAATGCTTGTGGATGACTGTTACTTATATATATATATATATATATATATATTTCTACCATGTATAATTATTTTTCTCTTATTTGATCGTTGTAGAAATAACATGGTTTGTTACTGTTCCTTTTATACATCTTGGTTAAAAAAAATAGTGTTCCTTTTATACATCTTGATAAAAAAATTTAGCTTTCCTTTTATGCATATATTGTGCTGCTGATTTCAACAGTATACCCAAGTATAGTCCTACAATTGGGGTTTGCGGGGGTGATGCGTATGCAACCTTACCTATACCCTGTGAAGTTGGAGAGATTGTTTTGGATAGACCCTCAGCTCAAGGAAAGCATATAAAAAACAAGTGTCTAAAGCAAATATAGTAGCGAAGAGCCATGCTGAAAACAATGGAAGAGAGAATTGTAGCAGCAGCAAATAATATAATAACTACAAATAATACAATAACTACAAGTAATACTAAGATTGAAGAATAAGATAGTAAGAAAGTACTAATAACAACATTGGGAAGGAACCTAGACAACACCCAATTACCTATTAACCTTCAACCCAATCCTCGTCCTCCATATCTTTCTATCTAGTGTCATGTCCTTGGTAAGCAGTAAGTGTGCCATGTCATAATCTAATCACCTCTCCCCAAGACTTCTTCGGCCATCCTCTACCTCTCCTAATACCCACTATAGCCACCCTCTCTTACCTGGGAATCTCTTCATCTTCTCTTCACATGCTCGAACCATCCCAGTTTTACCTCCCTCATCTTATCCATCATGGAGGTCACTCCCACCTTATTCGGGATCCTATCTCTCATGGTATATCCACACATCAATCCTGACATTCTCATTTCCGCTACTCTCAACTTCTGAATGTGCGAGTTCTTGACCGGCCAACACTCCTCCCCATACAATATAGCTGATCTTACCACCATATTATAAATCTTGATTTTAAGACTTGGTGGTACATGCTTATCACACAAGACATCAGACGTGAGCATTCACCCCGCACCAATACGATGTTTAGCATCATAGCAATCTCCCCATTTTCTTGATTATTGATTCTTTCTTGGAGATTACTTGTGTAGCAATCCCTACTTCCACATCTGCCACATGATTTATGTCGTTGAACTTGTACTCCAAATACTCTGTTTTAGTCCTGCTCGACCTCAGCCCTTTAGACTCCCGGGTTTGTCTCCAAACCTCCAAATTTGCTGCTGATTTCAAAATACATATATTTTTACTACTGCTTAAAACTAATGGTCGTCTGCCCGTTTTCTTGTTTCTTGATCTTACTAACTGGGGAATGTGCAGGACGGCTTATAATCAGAAAATCCGCATATAACTATTTGTTATGAAAACGTTGCATGAGTTCATTGTCTCTACTATTGAAAATTTTCTCATCCCCTACTAATTGAGTTCATTGTTCAGGTTTTTCAAATGAATGAAGTTCTGATATCTTATGAATAAATTTTCAACATGTATGATATCTTATTAATAATTGATCCTCCATTTATTACTTTTTCTAGCCGTAGAAGCAGAATATTGATGTTTTATGTGAGGGAAATAACTAAAAAGTCACAGTTAGTATAACTTGAAAGTCAATTTCACTTGAAGAATGTTTACTTTTTTCACTTGTCCTGCAGTCGAACTAGTTGAGTATATATTGGGGTGTTAAGTGAAACTGAGAAGGGTGGACACTAAACTATGTATATTTTTTTCTGTTTGGGAGGCAGTTTCAATCACTGAATCCTGCAATTCATGATTTTCTCGAACATCATGCAGGGGTCAATTGCCAAAGACATTGACTCTGTGAAGGAAAGTTCAAAGCCTGAGAGAGCAAGTGTCTTTGCTAAACGTGCTGCCCAGGTGGCTGCACTACACCTTAATAAGAAGCCAGCTTCAAGTGTTGAGGCTGATATAACTGGTGGTTCTACAGTAAGTTCTCATGCTCAGCCTAAGCAGGAGGCATCTACTGCATCATCCAAAAACTACACTTTTAAGAAAGGTAATTGGGTGTGTTGGTGTTCACCGTGAGTGTATATTTCGAAGATCCCCCCCCCCCCCTCCCTCCCTCCCCGTGTCTGTGTCTGTATGGTAGAGTTACCACTTATGTTTGTTATGTATATGTTGGATTATGAATCTCCAACCCTTCTTTCCTTTCAAAAGAACAAGAAAATAAAAGAGAATTGGGGTTGAAGTCTTTGATTCGTAGTTGTAGTTCTGTCTATCCTGAATGTGAGATTTCTAATTTTGACAGGTGACAGAGTGAAGTATGTTGGTCCGTTACAGTCAGGCTTTTCTCCCTTGCAAGCACCTTTGAGGTACCCCATTGAAAATTTGATTCCTAACAGTGATGTCTTGTTCAAATCGTCATGGAAAAAAGAACATTCATATCTATAGTTAACTTTCTATAAGTTCTAAAATTAATACTGCTAGTATCTAATAATAAGTATTTTGTTAAAATTTATTGATTAATAATGTCATGTGTTCAAACCATACTGCAGGCAAAAGCCTGGTGTTTAAGTAGACAAGGGTAAATGGGCATGAGTTTCCAATCGTGTGCGTTCGGACCTCAGGGATTTCTTGGTTAAAAGATAATAATTTTTGGAAGTTCATTTCAAATATTTATTTATCTTAGAATGAAAGTAATTTTGCATTACATCACAATAATGTCAAATACTTCAGGAATTTTAAGTGGAATATTGTCTTAATATATGTTTTAATATATATTCATTCAAACCTCTTAAGAAATAGTAAATCATTCCAAACCTTTTATATTTCCCATCTGACTAGTTTGTTTTCTTTACAAATTTTAAAAATAAGATTGACTATAGACTTTATTCTGAATGATCGAGTAACTCCGGATATAAAGTGGTCCTTCATGGAAGAAGTTGAAATAATTCATGACTTTATTTTATTATTTAGATATGTTTAAATTTTGACTGTTATTTAACGCTATGGTCTTACTGTGTTGTCTAGATGCTATAGTTTTCAACTTCTCATGAACTCTGAGAAGATGATGCAAATTTGTATTCATTCAGATGAAGAGTCGAAAATACAAATATAATGTTCTGATTTCAAATGGTTGAAAGTTTTACTATGTTTCTCAATCAAAGCAATCATATGGTATGGAATGGCTTGTATAAGGCAGTTAGGAATTGCTTGTGTAGGTTGACTTGTTTAGTAGAAGTCTTGTTATTCTTTATCAAGTAAAAGTGGATGTGTGTATTGTAATTTGACTCTTTTCTTTATTTTGCAAATCATGGCATGTACGTGATCACAGGGGTCCAACATATGGTTACAGGGGCAAAGTGGTTCTTGCATTTGAAGATAATGAGTCCTCTAAGATTGGGATCAGGTTTGATAGATCAATTCCAGAGGGCAATGATCTTGGTGGTCGCTG</genome_strand>
        <mrna_strand>TAACACGAAGAATGTNCTGATTTCTTCCACTTACGTACATTTGAACCTGTCACAAATTCACAAAATATGCACCTGATCTCCCCACGTTGTGCCCTAGGATTTTGTTATCAGGTCCAGCAG...............................................................................................GTTCAGAAATCTATCAGGAGACATTGGCCAAGGCTCTTGCAAAATACTTTGGTGTCAGGCTACTGATAGTTGATTCTCTTTTATTGCCTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAATTGCCAAAGACATTTACTCTGTGAAGGAAAGTTCAAAGCCTGAGAGAGCAAGTGTCTTTGCTAAACGTGCTGCCCAAGTGGCTGCACTACACCTTAATAAGAAGCCAGCTTCAAGTGTTGAGGCTGATATAACTGGTGGTTCTACAGTAAGTTCTCAAGCTCAGCCTAAGCAGGAGGCATCTACTGCATCATCCAAAAACTACACTTTCAAGAAAG............................................................................................................................................................................................................................................................GTGACAGAGTGAAGTATGTTGGTCCGTTACAGTCAGGCTTTTCTCCTTTGCAAGCACCTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCCAACATATGGTTACAGGCGCAAAGTGGTTCTTGCATTTGAAGATAATGAGTCCTCTAAGATTGGGATCA-GCTCGCTAGATCAATTCCACAGGGCAATGATCTTGGTGGTCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468700" ref_strand="+" ref_description="SGN-E468700 [cSTB-5-F4]">
      <seq>aattcggcacgagggacagccgaaaggagaaacatttcatatatgctttccagtcacatactggtggactactgtttacaaagttcggaagtaaccagacagcattgcttgaccttgcttttccagataattttggtaggttgcatgatagaagcaaagaaactcctaaaacgatgaagcagctcacccgtcttttccccaacaaagttaccatacaactacctcaggatgaagcattattatctgactggaaacaacagctggaacgggatatcggaactttgaaatctcagtcaaacattgccagcattcgcaatgttttgaatcgtataggaattgattgccccgacctcgaaactttatgcataaaagatcaagcattaacaagtgagagtgtggaaaagatagtaggctgggccttgggccatcactttatgcacaaatctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95720" stop="97841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95941" g_stop="95957" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="32" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95958" i_stop="96024" i_length="67">
            <donor d_prob="0.923" d_score="0.00"/>
            <acceptor a_prob="0.874" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96025" g_stop="96117" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="125" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96118" i_stop="96647" i_length="530">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96648" g_stop="96749" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="227" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96750" i_stop="96829" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96830" g_stop="96919" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="317" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96920" i_stop="97328" i_length="409">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97329" g_stop="97404" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="393" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97405" i_stop="97485" i_length="81">
            <donor d_prob="0.268" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97486" g_stop="97541" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="449" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E468700" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95941" e_stop="95957"/>
          <exon e_start="96025" e_stop="96117"/>
          <exon e_start="96648" e_stop="96749"/>
          <exon e_start="96830" e_stop="96919"/>
          <exon e_start="97329" e_stop="97404"/>
          <exon e_start="97486" e_stop="97541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCGAAAGGAGAAAGTATGTAAGGGCATAGTTATCTTTTTGTTTTCTGTTGGAATCCAATTCTGACTCGTAAAACTGACAGCATTCCATATATGCTTTGCAGTCACATCCCGGGGGACTACTGTTTACAAAGTTTGGAAGTAACCAGACAGCATTGCTTGACCTTGCTTTTCCAGTATGTGAATCTGTTTATCTCTTTTATTTGTCCTTTTTGCTTTCTAATGCAAGGAGGTGTCTGGCTTATAGTAATAAAATATATGCTTTACCTTCATATTAAAGGTTCCTGCTAGGTGTGTCTGTCAACTTTTTCCCCCTTTTCTATCTTGCGTCTTCTTCTATCATGTTGATGGTGGTGGAGAGCTGGGTTGTAATTGGGGAGGCCTTAAGATGACATCTATGTACTCTGAAGACGCATTGCACTATTTTAACTTGGGTTTCCTTTGTTATGTTGTTTTCCTGTGCAACACTCTGTAAATCAAGATTATTTACACTAATGTATTTGACTTACAGTACAAAACCTGTTTTTCCATCATATGATCTATAGTTAGGATTTAGGAGTTATGGATACCAGGTCTCTTGTTTATTAGAATTGGGCATCTCCTTGAAGCTTCATGGCTATTTACTTAATTATGGATTGCATTCTAGAAACATGTTCACTTGTAAAAGAACTGATAGCCAAGCATTGTGATGTCTCTGCTTTTCCAGGATAGTTTTGGTAGGTTGCATGATAGAAGCAAAGAAACTCCTAAAACGATGAAGCAGCTCACCCGTCTTTTCCCCAACAAAGTTACCATACAACTACCTCAGGTAAAATCTTAGTTCTTGTATACTCTTGCCAAATGTTAATACTGTTATTGAAGCATTCAATATGTGTCTCATTGTGGCAGGATGAAGCATTATTATCTGACTGGAAACAACAGCTGGAACGGGATATTGGAACTTTGAAATCTCAGTCAAACATTGTCAGCATTCGCAATGTGAGAGCTCCTTTCGCCCCATCTTAAGGCACCTTTCTTTGCCGAGGGAAAATACCTTTTTGTCTTCTCCTTTCATTGCTTTGGGGCTGTATATTATCTAGGACTATTTATAGATGATTTGTCCCCTATATTCAAATTTTACGCGGTGTTCTCTGAAGTTCTAATGGACACTGTAATTAGTAGAACCATGTAACATTTCTCTAGCACGCTGCATGCCCAATTTTCATTTTCTTGCTGTTTTCTTCTTATAGGCTTATCTCCTTTCAAAAGAGTGTACGTTAGTTGTTGAATGTTTTCATCTTTCTATCTGTTGGACATTCACTTAAAAAGGAGATGTGTATTGTAGTGATTTTATAATTGCATCCTCAATTGACCGACTGATTGAATTATTCTAACTTTTGTGTCTCAGGTTTTGAACCGTATAGGAATTGATTGCCCTGACCTCGAAACTTTATGCATAAAAGATCAAGCGTTAACAAGTGAGAGTATGTATTCCTTGAAGTTGGGATGTTTATGTTTGAAAACATGATAATAATATGTTCTCATGTTCTCATTGTGTGTGATAGGTGTGGAAAAGATAATAGGCTGGGCCTTGAGCCATCACTTTATGCACAAAACTGAA</genome_strand>
        <mrna_strand>ACAGCCGAAAGGAGAAA...................................................................CATTTCATATATGCTTTCCAGTCACATACTGGTGGACTACTGTTTACAAAGTTCGGAAGTAACCAGACAGCATTGCTTGACCTTGCTTTTCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACTCCTAAAACGATGAAGCAGCTCACCCGTCTTTTCCCCAACAAAGTTACCATACAACTACCTCAG................................................................................GATGAAGCATTATTATCTGACTGGAAACAACAGCTGGAACGGGATATCGGAACTTTGAAATCTCAGTCAAACATTGCCAGCATTCGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAATCGTATAGGAATTGATTGCCCCGACCTCGAAACTTTATGCATAAAAGATCAAGCATTAACAAGTGAGA.................................................................................GTGTGGAAAAGATAGTAGGCTGGGCCTTGGGCCATCACTTTATGCACAAATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606859" ref_strand="+" ref_description="SGN-E606859 [22812]">
      <seq>ctttccccaataaagttacatacaaccacctcaggatgaagcattattatctgactggaaacagcagctggaacgggatattggaactttgaaatctcagtcaaacattgccagcattcgcaatgttttgaatcgtataggaattgattgctccgacctcgaaactttatgcataaaagatcaagcattaacaagtgagagtgtggaaaagatagtaggctgggccttgggccatcactttatgcacaaatctgaatcgccagtaaaagaggccaagctggttatctccagtgcaagcatatcttatggtgtcaatattttccaagggatccacaatgaaactaagagtctaaaaatatctcttaaggatgtggttactgagcaatgactttgaaaagagactacttgcggacgtaattccgcctagcgatattggtgttacttttggtgacattggagcactggaaaatgtcaaggatactttgaaagaattggtgatgctgccacttcaaagacctgaattgtttcgtaaaggacagctgaccaagccttgcaagggaatactgctttttggcccccctggttactggtaaaacaatgcttgcaaaagctgttgcaaccgaggctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96527" stop="98611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96715" g_stop="96749" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96750" i_stop="96829" i_length="80">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96830" g_stop="96919" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="124" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96920" i_stop="97328" i_length="409">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97329" g_stop="97404" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="200" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97405" i_stop="97485" i_length="81">
            <donor d_prob="0.268" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97486" g_stop="97582" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="297" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97583" i_stop="97740" i_length="158">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.604" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97741" g_stop="97810" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="367" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97811" i_stop="97904" i_length="94">
            <donor d_prob="0.896" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97905" g_stop="98084" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="548" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98085" i_stop="98230" i_length="146">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.635" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98231" g_stop="98311" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="630" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E606859" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96715" e_stop="96749"/>
          <exon e_start="96830" e_stop="96919"/>
          <exon e_start="97329" e_stop="97404"/>
          <exon e_start="97486" e_stop="97582"/>
          <exon e_start="97741" e_stop="97810"/>
          <exon e_start="97905" e_stop="98084"/>
          <exon e_start="98231" e_stop="98311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCAACAAAGTTACCATACAACTACCTCAGGTAAAATCTTAGTTCTTGTATACTCTTGCCAAATGTTAATACTGTTATTGAAGCATTCAATATGTGTCTCATTGTGGCAGGATGAAGCATTATTATCTGACTGGAAACAACAGCTGGAACGGGATATTGGAACTTTGAAATCTCAGTCAAACATTGTCAGCATTCGCAATGTGAGAGCTCCTTTCGCCCCATCTTAAGGCACCTTTCTTTGCCGAGGGAAAATACCTTTTTGTCTTCTCCTTTCATTGCTTTGGGGCTGTATATTATCTAGGACTATTTATAGATGATTTGTCCCCTATATTCAAATTTTACGCGGTGTTCTCTGAAGTTCTAATGGACACTGTAATTAGTAGAACCATGTAACATTTCTCTAGCACGCTGCATGCCCAATTTTCATTTTCTTGCTGTTTTCTTCTTATAGGCTTATCTCCTTTCAAAAGAGTGTACGTTAGTTGTTGAATGTTTTCATCTTTCTATCTGTTGGACATTCACTTAAAAAGGAGATGTGTATTGTAGTGATTTTATAATTGCATCCTCAATTGACCGACTGATTGAATTATTCTAACTTTTGTGTCTCAGGTTTTGAACCGTATAGGAATTGATTGCCCTGACCTCGAAACTTTATGCATAAAAGATCAAGCGTTAACAAGTGAGAGTATGTATTCCTTGAAGTTGGGATGTTTATGTTTGAAAACATGATAATAATATGTTCTCATGTTCTCATTGTGTGTGATAGGTGTGGAAAAGATAATAGGCTGGGCCTTGAGCCATCACTTTATGCACAAAACTGAATCGCCAGTAGAAGAGGTCAAGCTGGTTATCTCCAGTGCAAGGTCAAATTAAATTTTACTGTCTAATTCATGATGTTGGAAGATGTGCACTATTTAGTCATCTTGTTTTCCACTTTGGGTCACTGAAGGGGTCTTCATAATTTTTTGGGGGTTGGCAGAAGGAGGCATAATACTGATGTGTCTATTACTTGATCTGACAGCATTTCTTATGGGGTCAATATTTTCCAAGGGATCCACAATGAAACTAAGAGTCTAAAAAAATCTTTAAAGGTGAAGTATCTATTTTTGGCAAACTTAATTTTGTCAAAAGGTTGCCATTTGTTCTGAACTTCTTGAAGCAAAATACTGATGTTTGAGTTTTCAGGATGTGGTTACTGA-AAATGACTTTGAAAAGAGACTACTTGCGGACGTAATTCCGCCTAGCGATATTGGTGTTACTTTTTGTGACATTGGAGCACTGGAAAATGTCAAGGATACTTTGAAAGAATTGGTGATGCTGCCACTTCAAAGACCTGAATTGTTTTGTAAAGGACAGCTGACCAAGGTGAAAAGATTTTCTTGTTAAAATCTACATGGATCTATATTTTGCATTGGAATTCTTCATTCTTTGTCTTGACATAGGGTGTAGGGTTCGTTGCAACTTTTTCATCATTTATGCACTTCTATTTCTGAAGAAGCTATCATCTACAGCCTTGCAAGGGAATACTGCTTTTTGGCCCCCCTGG-TACTGGTAAAACAATGCTTGCAAAAGCTGTTGCAACTGAGGCTGGT</genome_strand>
        <mrna_strand>CTTTCCCCAATAAAGTTA-CATACAACCACCTCAG................................................................................GATGAAGCATTATTATCTGACTGGAAACAGCAGCTGGAACGGGATATTGGAACTTTGAAATCTCAGTCAAACATTGCCAGCATTCGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAATCGTATAGGAATTGATTGCTCCGACCTCGAAACTTTATGCATAAAAGATCAAGCATTAACAAGTGAGA.................................................................................GTGTGGAAAAGATAGTAGGCTGGGCCTTGGGCCATCACTTTATGCACAAATCTGAATCGCCAGTAAAAGAGGCCAAGCTGGTTATCTCCAGTGCAAG..............................................................................................................................................................CATATCTTATGGTGTCAATATTTTCCAAGGGATCCACAATGAAACTAAGAGTCTAAAAATATCTCTTAAG..............................................................................................GATGTGGTTACTGAGCAATGACTTTGAAAAGAGACTACTTGCGGACGTAATTCCGCCTAGCGATATTGGTGTTACTTTTGGTGACATTGGAGCACTGGAAAATGTCAAGGATACTTTGAAAGAATTGGTGATGCTGCCACTTCAAAGACCTGAATTGTTTCGTAAAGGACAGCTGACCAAG..................................................................................................................................................CCTTGCAAGGGAATACTGCTTTTTGGCCCCCCTGGTTACTGGTAAAACAATGCTTGCAAAAGCTGTTGCAACCGAGGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615670" ref_strand="+" ref_description="SGN-E615670 [65471]">
      <seq>gttatctccagtgcaagcatatcttatggtgtcaatattttccaagggatccacaatgaaactaagagtctaaaaatatctcttaaggatgtggttactgagaatgactttgaaaagagactacttgcggacgtaattccgcctagcgatattggtgttacttttggtgacattggagcactggaaaatgtcaaggatactttgaaagaattggtgatgctgccacttcaaagacctgaattgttttgtaaaggacagctgaccaagccttgcaagggaatactgctttttggcccccctggtactggtaaaacaatgcttgcaaaagctgttgcaaccgaggctggtgcaaactttattaacatatcaatgtcaagcattacttcaaagtggttcggtgaaggagagaagtatgtcaaagcagtcttctcattagctagtaaaatagcgcctagtgttgtttttgttgacgaggtggatagcatgctaggaagacgagaaaatcctggtgagcatgaagcaatgcggaaaatgaagaatgaattcatggtgaattgggatggcttgcgtacaaaggacaaggagcgagttcttgtacttgccgcaactaatagaccattcgaccttgatgaagcagttattaggagacttccacggaggttgatggtaaacttgccagatgctccgaacagggagaacattttgagagtgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97435" stop="99444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97566" g_stop="97582" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97583" i_stop="97740" i_length="158">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.604" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97741" g_stop="97810" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="87" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97811" i_stop="97904" i_length="94">
            <donor d_prob="0.896" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97905" g_stop="98084" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="267" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98085" i_stop="98230" i_length="146">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98231" g_stop="98353" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="390" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98354" i_stop="98439" i_length="86">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98440" g_stop="98523" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="474" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98524" i_stop="98768" i_length="245">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98769" g_stop="98953" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="659" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98954" i_stop="99087" i_length="134">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99088" g_stop="99144" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="716" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E615670" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97566" e_stop="97582"/>
          <exon e_start="97741" e_stop="97810"/>
          <exon e_start="97905" e_stop="98084"/>
          <exon e_start="98231" e_stop="98353"/>
          <exon e_start="98440" e_stop="98523"/>
          <exon e_start="98769" e_stop="98953"/>
          <exon e_start="99088" e_stop="99144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCTCCAGTGCAAGGTCAAATTAAATTTTACTGTCTAATTCATGATGTTGGAAGATGTGCACTATTTAGTCATCTTGTTTTCCACTTTGGGTCACTGAAGGGGTCTTCATAATTTTTTGGGGGTTGGCAGAAGGAGGCATAATACTGATGTGTCTATTACTTGATCTGACAGCATTTCTTATGGGGTCAATATTTTCCAAGGGATCCACAATGAAACTAAGAGTCTAAAAAAATCTTTAAAGGTGAAGTATCTATTTTTGGCAAACTTAATTTTGTCAAAAGGTTGCCATTTGTTCTGAACTTCTTGAAGCAAAATACTGATGTTTGAGTTTTCAGGATGTGGTTACTGAAAATGACTTTGAAAAGAGACTACTTGCGGACGTAATTCCGCCTAGCGATATTGGTGTTACTTTTTGTGACATTGGAGCACTGGAAAATGTCAAGGATACTTTGAAAGAATTGGTGATGCTGCCACTTCAAAGACCTGAATTGTTTTGTAAAGGACAGCTGACCAAGGTGAAAAGATTTTCTTGTTAAAATCTACATGGATCTATATTTTGCATTGGAATTCTTCATTCTTTGTCTTGACATAGGGTGTAGGGTTCGTTGCAACTTTTTCATCATTTATGCACTTCTATTTCTGAAGAAGCTATCATCTACAGCCTTGCAAGGGAATACTGCTTTTTGGCCCCCCTGGTACTGGTAAAACAATGCTTGCAAAAGCTGTTGCAACTGAGGCTGGTGCAAACTTTATTAATATATCAATGTCAAGCATTACTTCAAAGGTACCACCTATATATTTGCTTGTGTATTCCCATTTTGTCTTTTAAAGCCCTTGCTTTAATGGCTTACAACTTTTTGTTGATTGTAGTGGTTCGGTGAAGGAGAGAAGTATGTCAAAGCAGTCTTCTCATTAGCTAGTAAAATAGCGCCTAGTGTCGTTTTTGTTGACGAGGTTGGTAAAATATACATTATATTTATCATCTCGAACTTGTTATATTGATGTTATAGTTAAAGTATCTTACATATTTTGCCTTTTGTGTATAAGTGGGCACTCCTCTTTTAATTTGATCATGTTGTTCTTTAGCTTATATGTTATGTAAATGTAAATGCATCCTCTTTACTGCAAGTCATCTTCTGTTCAATTGAAAAGATTATTGTGTTTACCCTCCGCTTTCTTCCATTTCGCTGGTCTATTAGGTGGATAGCATGCTAGGGAGACGAGAAAATCCTGGTGAGCATGAAGCAATGCGGAAAATGAAGAATGAATTCATGGTGAATTGGGATGGCTTGCGTACAAAGGACAAGGAGCGAGTTCTTGTACTTGCTGCAACTAATAGACCATTCGACCTTGATGAAGCAGTTATTAGGAGACTTCCACGGAGGCAAGTAATAATCGTTCAGTGAATCATTTTTTCTGATTAATCCGCAAATGGAAGGGGGGCTAAAGAAAAAGAGAAAATTTATGTTTTACTAGTTTATGTGGAGTCGTAATGTTAAGTGCTCTCCATTGATGCAGGTTGATGGTAAACTTGCCAGATGCTCCGAACAGGGAGAAAATTTTGAGAGTGATATT</genome_strand>
        <mrna_strand>GTTATCTCCAGTGCAAG..............................................................................................................................................................CATATCTTATGGTGTCAATATTTTCCAAGGGATCCACAATGAAACTAAGAGTCTAAAAATATCTCTTAAG..............................................................................................GATGTGGTTACTGAGAATGACTTTGAAAAGAGACTACTTGCGGACGTAATTCCGCCTAGCGATATTGGTGTTACTTTTGGTGACATTGGAGCACTGGAAAATGTCAAGGATACTTTGAAAGAATTGGTGATGCTGCCACTTCAAAGACCTGAATTGTTTTGTAAAGGACAGCTGACCAAG..................................................................................................................................................CCTTGCAAGGGAATACTGCTTTTTGGCCCCCCTGGTACTGGTAAAACAATGCTTGCAAAAGCTGTTGCAACCGAGGCTGGTGCAAACTTTATTAACATATCAATGTCAAGCATTACTTCAAAG......................................................................................TGGTTCGGTGAAGGAGAGAAGTATGTCAAAGCAGTCTTCTCATTAGCTAGTAAAATAGCGCCTAGTGTTGTTTTTGTTGACGAG.....................................................................................................................................................................................................................................................GTGGATAGCATGCTAGGAAGACGAGAAAATCCTGGTGAGCATGAAGCAATGCGGAAAATGAAGAATGAATTCATGGTGAATTGGGATGGCTTGCGTACAAAGGACAAGGAGCGAGTTCTTGTACTTGCCGCAACTAATAGACCATTCGACCTTGATGAAGCAGTTATTAGGAGACTTCCACGGAG......................................................................................................................................GTTGATGGTAAACTTGCCAGATGCTCCGAACAGGGAGAACATTTTGAGAGTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262778" ref_strand="+" ref_description="SGN-E262778 [cLEG-63-H4]">
      <seq>tttgaagaaatccctcaaggacgtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97601" stop="98793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97792" g_stop="97810" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.684"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97811" i_stop="97904" i_length="94">
            <donor d_prob="0.896" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97905" g_stop="98084" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="199" r_length="180" r_score="0.883"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98085" i_stop="98230" i_length="146">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.635" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98231" g_stop="98353" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="322" r_length="123" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98354" i_stop="98439" i_length="86">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98440" g_stop="98493" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="376" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E262778" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97792" e_stop="97810"/>
          <exon e_start="97905" e_stop="98084"/>
          <exon e_start="98231" e_stop="98353"/>
          <exon e_start="98440" e_stop="98493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAAAAAATCTTTAAAGGTGAAGTATCTATTTTTGGCAAACTTAATTTTGTCAAAAGGTTGCCATTTGTTCTGAACTTCTTGAAGCAAAATACTGATGTTTGAGTTTTCAGGATGTGGTTACTGAAAATGACTTTGAAAAGAGACTACTTGCGGACGTAATTCCGCCTAGCGATATTGGTGTTACTTTTTGTGACATTGGAGCACTGGAAAATGTCAAGGATACTTTGAAAGAATTGGTGATGCTGCCACTTCAAAGACCTGAATTGTTTTGTAAAGGACAGCTGACCAAGGTGAAAAGATTTTCTTGTTAAAATCTACATGGATCTATATTTTGCATTGGAATTCTTCATTCTTTGTCTTGACATAGGGTGTAGGGTTCGTTGCAACTTTTTCATCATTTATGCACTTCTATTTCTGAAGAAGCTATCATCTACAGCCTTGCAAGGGAATACTGCTTTTTGGCCCCCCTGGTACTGGTAAAACAATGCTTGCAAAAGCTGTTGCAACTGAGGCTGGTGCAAACTTTATTAATATATCAATGTCAAGCATTACTTCAAAGGTACCACCTATATATTTGCTTGTGTATTCCCATTTTGTCTTTTAAAGCCCTTGCTTTAATGGCTTACAACTTTTTGTTGATTGTAGTGGTTCGGTGAAGGAGAGAAGTATGTCAAAGCAGTCTTCTCATTAGCTAGTAAA</genome_strand>
        <mrna_strand>TTTGAAGAAATCCCTCAAG..............................................................................................GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG..................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG......................................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252372" ref_strand="+" ref_description="SGN-E252372 [cLEG-12-O3]">
      <seq>agagaagtatgtcaaagcagccttctcattagctagtaaaataacgcctagtgtcgtgtttgttgacgaggtggatagcatgctacggagacgagaaaatcctggtgagcatgaatcaatgcggaaaatgaagaatgaattcatggtgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0066F23-eMWPn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0066F23.1" temp_strand="+" temp_description="C06SLm0066F23.1  AC226017.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0066F23 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98154" stop="99151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98454" g_stop="98523" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98524" i_stop="98768" i_length="245">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98769" g_stop="98851" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="153" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0066F23.1" gen_strand="+" ref_id="SGN-E252372" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0066F23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98454" e_stop="98523"/>
          <exon e_start="98769" e_stop="98851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGTATGTCAAAGCAGTCTTCTCATTAGCTAGTAAAATAGCGCCTAGTGTCGTTTTTGTTGACGAGGTTGGTAAAATATACATTATATTTATCATCTCGAACTTGTTATATTGATGTTATAGTTAAAGTATCTTACATATTTTGCCTTTTGTGTATAAGTGGGCACTCCTCTTTTAATTTGATCATGTTGTTCTTTAGCTTATATGTTATGTAAATGTAAATGCATCCTCTTTACTGCAAGTCATCTTCTGTTCAATTGAAAAGATTATTGTGTTTACCCTCCGCTTTCTTCCATTTCGCTGGTCTATTAGGTGGATAGCATGCTAGGGAGACGAGAAAATCCTGGTGAGCATGAAGCAATGCGGAAAATGAAGAATGAATTCATGGTGAATTG</genome_strand>
        <mrna_strand>AGAGAAGTATGTCAAAGCAGCCTTCTCATTAGCTAGTAAAATAACGCCTAGTGTCGTGTTTGTTGACGAG.....................................................................................................................................................................................................................................................GTGGATAGCATGCTACGGAGACGAGAAAATCCTGGTGAGCATGAATCAATGCGGAAAATGAAGAATGAATTCATGGTGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>130</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4726" PGL_stop="5631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4726" e_stop="4827"/>
            <exon e_start="4963" e_stop="5631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4726" e_stop="4827" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="4828" i_stop="4962" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4963" e_stop="5631" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4726" stop="4827"/>
              <exon start="4963" stop="5631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4726" stop="4827"/>
              <exon start="4963" stop="5609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4727" stop="4827"/>
              <exon start="4963" stop="5383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4815" stop="4827"/>
              <exon start="4963" stop="5247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAATATGATCCTTTTGGGCGACAAATTGCTATGTAAAATCAAAATTCTCCATTGAAATTGCTCTCAGGAAATGGCGAAAGATTCACCAAAAACTCCCAAG : TCGAGGTCGGCGACGAATCCATCAGTTGGCGTTTGGGCAGTACAGTGTGAAAAATGCTTGAAATGGAGGAGGATTGCGACACAGGAACAGTTTGAAGATATCAGAAGTAGGTTTACTGAAGAACCCTTTAACTGCCCCAATGGTACTTGTGATGATCCTGCAGACATTGAGTACGATGCTTCTCGAACTTGGGCTATTGACAAGCCCAATCTCCCTAAAACCCCATCTGGCTTTAAGAGAGAATTGTACCTCAGGAGAGATTACTCTAAGATGGATACTTATTATTTCACTCCTTTAGGGAAGAAACTCAGATCCGTTACTGATGTTACTACTTTTCTTGAACAAAATCCCCAGTTATCTGACGTTAAACCCTCAGATTTCAGCTTTACCAGCCCCAAAGTTATGGATGACACCATACCCTCTACCGCTCTTCTTGCCAACTCTCACAAGAAGGGTGTAGCTAGTAGCACTAAATGACTGGATGGATGGAGCTGGACTTGTTCATATGCTTAGTAGATGCACTGTTTAGAGTCTTAAAGGTTCAACTTATTCGCCATGTATTGTTATTTTCCATCTGCAAAATACATTTCAACTGCTCTGTTTACTTTTCATGGTGATGGATTTGGTTGTGACAAAAAGGAAAATTTGTTAGCCTTCTTTACTTTGAGT</gDNA_template>
            <first_frame> V  N  M  I  L  L  G  D  K  L  L  C  K  I  K  I  L  H  *  N  C  S  Q  E  M  A  K  D  S  P  K  T  P  K  :  S  R  S  A  T  N  P  S  V  G  V  W  A  V  Q  C  E  K  C  L  K  W  R  R  I  A  T  Q  E  Q  F  E  D  I  R  S  R  F  T  E  E  P  F  N  C  P  N  G  T  C  D  D  P  A  D  I  E  Y  D  A  S  R  T  W  A  I  D  K  P  N  L  P  K  T  P  S  G  F  K  R  E  L  Y  L  R  R  D  Y  S  K  M  D  T  Y  Y  F  T  P  L  G  K  K  L  R  S  V  T  D  V  T  T  F  L  E  Q  N  P  Q  L  S  D  V  K  P  S  D  F  S  F  T  S  P  K  V  M  D  D  T  I  P  S  T  A  L  L  A  N  S  H  K  K  G  V  A  S  S  T  K  *  L  D  G  W  S  W  T  C  S  Y  A  *  *  M  H  C  L  E  S  *  R  F  N  L  F  A  M  Y  C  Y  F  P  S  A  K  Y  I  S  T  A  L  F  T  F  H  G  D  G  F  G  C  D  K  K  E  N  L  L  A  F  F  T  L  S </first_frame>
            <second_frame>  *  I  *  S  F  W  A  T  N  C  Y  V  K  S  K  F  S  I  E  I  A  L  R  K  W  R  K  I  H  Q  K  L  P  S :   R  G  R  R  R  I  H  Q  L  A  F  G  Q  Y  S  V  K  N  A  *  N  G  G  G  L  R  H  R  N  S  L  K  I  S  E  V  G  L  L  K  N  P  L  T  A  P  M  V  L  V  M  I  L  Q  T  L  S  T  M  L  L  E  L  G  L  L  T  S  P  I  S  L  K  P  H  L  A  L  R  E  N  C  T  S  G  E  I  T  L  R  W  I  L  I  I  S  L  L  *  G  R  N  S  D  P  L  L  M  L  L  L  F  L  N  K  I  P  S  Y  L  T  L  N  P  Q  I  S  A  L  P  A  P  K  L  W  M  T  P  Y  P  L  P  L  F  L  P  T  L  T  R  R  V  *  L  V  A  L  N  D  W  M  D  G  A  G  L  V  H  M  L  S  R  C  T  V  *  S  L  K  G  S  T  Y  S  P  C  I  V  I  F  H  L  Q  N  T  F  Q  L  L  C  L  L  F  M  V  M  D  L  V  V  T  K  R  K  I  C  *  P  S  L  L  *   </second_frame>
            <third_frame>   K  Y  D  P  F  G  R  Q  I  A  M  *  N  Q  N  S  P  L  K  L  L  S  G  N  G  E  R  F  T  K  N  S  Q   : V  E  V  G  D  E  S  I  S  W  R  L  G  S  T  V  *  K  M  L  E  M  E  E  D  C  D  T  G  T  V  *  R  Y  Q  K  *  V  Y  *  R  T  L  *  L  P  Q  W  Y  L  *  *  S  C  R  H  *  V  R  C  F  S  N  L  G  Y  *  Q  A  Q  S  P  *  N  P  I  W  L  *  E  R  I  V  P  Q  E  R  L  L  *  D  G  Y  L  L  F  H  S  F  R  E  E  T  Q  I  R  Y  *  C  Y  Y  F  S  *  T  K  S  P  V  I  *  R  *  T  L  R  F  Q  L  Y  Q  P  Q  S  Y  G  *  H  H  T  L  Y  R  S  S  C  Q  L  S  Q  E  G  C  S  *  *  H  *  M  T  G  W  M  E  L  D  L  F  I  C  L  V  D  A  L  F  R  V  L  K  V  Q  L  I  R  H  V  L  L  F  S  I  C  K  I  H  F  N  C  S  V  Y  F  S  W  *  W  I  W  L  *  Q  K  G  K  F  V  S  L  L  Y  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4783" stop="4827"/>
                    <exon start="4963" stop="5439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCSQEMAKDSPKTPKSRSATNPSVGVWAVQCEKCLKWRRIATQEQFEDIRSRFTEEPFNCPNGTCDDPADIEYDASRTWAIDKPNLPKTPSGFKRELYLRRDYSKMDTYYFTPLGKKLRSVTDVTTFLEQNPQLSDVKPSDFSFTSPKVMDDTIPSTALLANSHKKGVASSTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7885" PGL_stop="11567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7919" e_stop="8056"/>
            <exon e_start="8134" e_stop="8264"/>
            <exon e_start="8342" e_stop="8410"/>
            <exon e_start="8630" e_stop="8701"/>
            <exon e_start="10572" e_stop="10644"/>
            <exon e_start="11186" e_stop="11567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7919" e_stop="8056" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.863">
            <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8134" e_stop="8264" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.606">
            <gDNA_intron_boundary i_start="8265" i_stop="8341" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8342" e_stop="8410" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.850">
            <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8630" e_stop="8701" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10572" e_stop="10644" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="11186" e_stop="11567" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7919" stop="8056"/>
              <exon start="8134" stop="8264"/>
              <exon start="8342" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
              <exon start="11186" stop="11400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7919" stop="8056"/>
              <exon start="8134" stop="8264"/>
              <exon start="8342" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7919" stop="8056"/>
              <exon start="8134" stop="8264"/>
              <exon start="8342" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7919" stop="8056"/>
              <exon start="8134" stop="8264"/>
              <exon start="8342" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7924" stop="8056"/>
              <exon start="8134" stop="8264"/>
              <exon start="8342" stop="8410"/>
              <exon start="8630" stop="8682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7934" stop="8056"/>
              <exon start="8134" stop="8264"/>
              <exon start="8342" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
              <exon start="11186" stop="11291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7949" stop="8056"/>
              <exon start="8134" stop="8264"/>
              <exon start="8342" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
              <exon start="11186" stop="11202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7974" stop="8056"/>
              <exon start="8134" stop="8264"/>
              <exon start="8342" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
              <exon start="11186" stop="11364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8235" stop="8264"/>
              <exon start="8342" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
              <exon start="11186" stop="11555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10609" stop="10644"/>
              <exon start="11186" stop="11567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG : AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCT : TCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG : CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG : GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG : CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</gDNA_template>
            <first_frame> L  K  L  V  Y  E  I  C  R  S  A  I  K  F  E  F  L  S  L  L  P  H  I  K  F  M  E  I  V  A  K  L  Q  K  Q  F  M  D  F  I  S  A  L  Y  R  E  :  R  F  L  D  D  Q  F  L  Q  L  Q  N  L  Q  D  E  S  N  P  D  F  V  R  E  V  V  S  L  F  F  V  D  S  E  N  L  I  N  N  L  T  A  A  L :   Q  Q  Q  V  V  D  F  K  Q  V  D  S  H  V  H  Q  F  K  G  S  S  S  S :   I  G  A  Q  R  V  K  N  A  C  V  A  F  K  T  F  C  E  G  K  N  I  E  G :   C  V  Q  C  L  Q  Q  V  K  H  E  Y  F  L  V  K  N  K  L  E  T  L  M  M  :  L  E  K  Q  I  L  A  A  G  G  R  I  P  D  L  S  *  L  G  A  N  D  L  K  S  T  S  *  E  K  D  S  R  E  K  S  W  Q  *  R  *  D  S  R  L  L  D  C  N  S  C  R  C  K  V  F  P  C  E  *  Q  T  F  *  V  L  N  Y  L  Y  N  S  S  C  *  T  F  *  P  L  N  G  L  L  C  F  S  H  *  V  V  E  L  F  S  L  L  S  S  R  I  I  L  *  M  H  M  E  V  C  L  T  A  *  Y  M  S  R  *  F  Q  *  T  S  C  Q  K  </first_frame>
            <second_frame>  *  N  *  Y  M  K  S  V  D  L  Q  *  S  L  S  F  *  V  F  S  P  T  S  N  S  W  K  *  *  P  S  C  R  N  S  S  W  T  S  F  Q  L  C  T  V  R :   D  S  W  M  I  S  F  F  S  F  R  I  C  K  M  R  A  T  Q  T  L  F  V  K  *  F  H  F  S  L  *  I  Q  K  T  L  S  T  I  *  Q  Q  L   : F  N  N  R  L  *  I  L  S  K  L  I  P  M  S  T  S  S  R  V  A  V  P   : A  *  V  H  K  E  *  R  M  L  V  W  L  L  K  P  S  A  K  G  R  T  L  K   : G  V  C  N  V  C  S  R  *  N  M  N  I  F  L  *  R  T  N  L  K  P  *  *  C :   W  R  S  K  S  W  R  L  V  V  G  F  L  T  C  H  S  *  V  L  M  I  *  S  P  H  P  E  R  K  I  V  E  R  K  V  G  S  R  D  E  I  Q  D  C  W  I  V  I  V  V  D  A  K  Y  F  H  V  N  N  R  P  F  R  C  *  T  I  Y  T  I  L  V  V  E  L  F  N  P  *  M  V  Y  C  A  L  A  I  K  *  *  N  F  S  A  C  *  V  V  V  L  Y  C  K  C  T  W  K  F  V  *  L  L  D  I  *  V  G  S  F  N  K  Q  V  V  R  K </second_frame>
            <third_frame>   K  I  S  I  *  N  L  *  I  C  N  K  V  *  V  F  E  S  S  P  P  H  Q  I  H  G  N  S  S  Q  V  A  E  T  V  H  G  L  H  F  S  F  V  P  *   : E  I  L  G  *  S  V  S  S  A  S  E  F  A  R  *  E  Q  P  R  L  C  S  *  S  S  F  T  F  L  C  R  F  R  K  P  Y  Q  Q  S  D  S  S  S  :  S  T  T  G  C  R  F  *  A  S  *  F  P  C  P  P  V  Q  G  *  Q  F  Q  :  H  R  C  T  K  S  K  E  C  L  C  G  F  *  N  L  L  R  R  E  E  H  *  R  :  V  C  A  M  S  A  A  G  E  T  *  I  F  S  C  E  E  Q  T  *  N  L  D  D   : A  G  E  A  N  L  G  G  W  W  *  D  S  *  P  V  I  A  R  C  *  *  F  E  V  H  I  L  R  E  R  *  *  R  E  K  L  A  V  E  M  R  F  K  I  A  G  L  *  *  L  *  M  Q  S  I  S  M  *  I  T  D  L  L  G  V  E  L  F  I  Q  F  *  L  L  N  F  L  T  L  E  W  F  T  V  L  *  P  L  S  S  R  T  F  Q  L  V  K  *  S  Y  Y  I  V  N  A  H  G  S  L  F  D  C  L  I  Y  E  *  V  V  S  I  N  K  L  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7919" stop="8056"/>
                    <exon start="8134" stop="8264"/>
                    <exon start="8342" stop="8410"/>
                    <exon start="8630" stop="8701"/>
                    <exon start="10572" stop="10644"/>
                    <exon start="11186" stop="11236"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLVYEICRSAIKFEFLSLLPHIKFMEIVAKLQKQFMDFISALYRERFLDDQFLQLQNLQDESNPDFVREVVSLFFVDSENLINNLTAALQQQVVDFKQVDSHVHQFKGSSSSIGAQRVKNACVAFKTFCEGKNIEGCVQCLQQVKHEYFLVKNKLETLMMLEKQILAAGGRIPDLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7885" e_stop="8056"/>
            <exon e_start="8134" e_stop="8410"/>
            <exon e_start="8630" e_stop="8701"/>
            <exon e_start="10572" e_stop="10644"/>
            <exon e_start="11186" e_stop="11567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7885" e_stop="8056" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.863">
            <gDNA_intron_boundary i_start="8057" i_stop="8133" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8134" e_stop="8410" e_length="277"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.850">
            <gDNA_intron_boundary i_start="8411" i_stop="8629" i_length="219"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8630" e_stop="8701" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8702" i_stop="10571" i_length="1870"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10572" e_stop="10644" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541"/>
          </intron>
          <exon e_serial="5" e_score="0.955">
            <gDNA_exon_boundary e_start="11186" e_stop="11567" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7885" stop="8056"/>
              <exon start="8134" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7885" stop="8056"/>
              <exon start="8134" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7886" stop="8056"/>
              <exon start="8134" stop="8328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7997" stop="8056"/>
              <exon start="8134" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
              <exon start="11186" stop="11346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7997" stop="8056"/>
              <exon start="8134" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
              <exon start="11186" stop="11300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7997" stop="8056"/>
              <exon start="8134" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
              <exon start="11186" stop="11263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7997" stop="8056"/>
              <exon start="8134" stop="8410"/>
              <exon start="8630" stop="8701"/>
              <exon start="10572" stop="10644"/>
              <exon start="11186" stop="11205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8000" stop="8056"/>
              <exon start="8134" stop="8400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10609" stop="10644"/>
              <exon start="11186" stop="11567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTCAATTCGATGAGCATTGATTTGGTACCTATTAAAATTAGTATATGAAATCTGTAGATCTGCAATAAAGTTTGAGTTTTTGAGTCTTCTCCCCCACATCAAATTCATGGAAATAGTAGCCAAGTTGCAGAAACAGTTCATGGACTTCATTTCAGCTTTGTACCGTGAG : AGATTCTTGGATGATCAGTTTCTTCAGCTTCAGAATTTGCAAGATGAGAGCAACCCAGACTTTGTTCGTGAAGTAGTTTCACTTTTCTTTGTAGATTCAGAAAACCTTATCAACAATCTGACAGCAGCTCTGTGAGAAATAAACTCTTTTTATTGTTTACCTTTAACAGAAATATTGGATCATTAGTTTATTATTTGGTCAATTGTAGTCAACAACAGGTTGTAGATTTTAAGCAAGTTGATTCCCATGTCCACCAGTTCAAGGGTAGCAGTTCCAG : CATAGGTGCACAAAGAGTAAAGAATGCTTGTGTGGCTTTTAAAACCTTCTGCGAAGGGAAGAACATTGAAGG : GTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG : CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</gDNA_template>
            <first_frame> K  V  N  S  M  S  I  D  L  V  P  I  K  I  S  I  *  N  L  *  I  C  N  K  V  *  V  F  E  S  S  P  P  H  Q  I  H  G  N  S  S  Q  V  A  E  T  V  H  G  L  H  F  S  F  V  P  *   : E  I  L  G  *  S  V  S  S  A  S  E  F  A  R  *  E  Q  P  R  L  C  S  *  S  S  F  T  F  L  C  R  F  R  K  P  Y  Q  Q  S  D  S  S  S  V  R  N  K  L  F  L  L  F  T  F  N  R  N  I  G  S  L  V  Y  Y  L  V  N  C  S  Q  Q  Q  V  V  D  F  K  Q  V  D  S  H  V  H  Q  F  K  G  S  S  S  S :   I  G  A  Q  R  V  K  N  A  C  V  A  F  K  T  F  C  E  G  K  N  I  E  G :   C  V  Q  C  L  Q  Q  V  K  H  E  Y  F  L  V  K  N  K  L  E  T  L  M  M  :  L  E  K  Q  I  L  A  A  G  G  R  I  P  D  L  S  *  L  G  A  N  D  L  K  S  T  S  *  E  K  D  S  R  E  K  S  W  Q  *  R  *  D  S  R  L  L  D  C  N  S  C  R  C  K  V  F  P  C  E  *  Q  T  F  *  V  L  N  Y  L  Y  N  S  S  C  *  T  F  *  P  L  N  G  L  L  C  F  S  H  *  V  V  E  L  F  S  L  L  S  S  R  I  I  L  *  M  H  M  E  V  C  L  T  A  *  Y  M  S  R  *  F  Q  *  T  S  C  Q  K  </first_frame>
            <second_frame>  K  S  I  R  *  A  L  I  W  Y  L  L  K  L  V  Y  E  I  C  R  S  A  I  K  F  E  F  L  S  L  L  P  H  I  K  F  M  E  I  V  A  K  L  Q  K  Q  F  M  D  F  I  S  A  L  Y  R  E  :  R  F  L  D  D  Q  F  L  Q  L  Q  N  L  Q  D  E  S  N  P  D  F  V  R  E  V  V  S  L  F  F  V  D  S  E  N  L  I  N  N  L  T  A  A  L  *  E  I  N  S  F  Y  C  L  P  L  T  E  I  L  D  H  *  F  I  I  W  S  I  V  V  N  N  R  L  *  I  L  S  K  L  I  P  M  S  T  S  S  R  V  A  V  P   : A  *  V  H  K  E  *  R  M  L  V  W  L  L  K  P  S  A  K  G  R  T  L  K   : G  V  C  N  V  C  S  R  *  N  M  N  I  F  L  *  R  T  N  L  K  P  *  *  C :   W  R  S  K  S  W  R  L  V  V  G  F  L  T  C  H  S  *  V  L  M  I  *  S  P  H  P  E  R  K  I  V  E  R  K  V  G  S  R  D  E  I  Q  D  C  W  I  V  I  V  V  D  A  K  Y  F  H  V  N  N  R  P  F  R  C  *  T  I  Y  T  I  L  V  V  E  L  F  N  P  *  M  V  Y  C  A  L  A  I  K  *  *  N  F  S  A  C  *  V  V  V  L  Y  C  K  C  T  W  K  F  V  *  L  L  D  I  *  V  G  S  F  N  K  Q  V  V  R  K </second_frame>
            <third_frame>   S  Q  F  D  E  H  *  F  G  T  Y  *  N  *  Y  M  K  S  V  D  L  Q  *  S  L  S  F  *  V  F  S  P  T  S  N  S  W  K  *  *  P  S  C  R  N  S  S  W  T  S  F  Q  L  C  T  V  R :   D  S  W  M  I  S  F  F  S  F  R  I  C  K  M  R  A  T  Q  T  L  F  V  K  *  F  H  F  S  L  *  I  Q  K  T  L  S  T  I  *  Q  Q  L  C  E  K  *  T  L  F  I  V  Y  L  *  Q  K  Y  W  I  I  S  L  L  F  G  Q  L  *  S  T  T  G  C  R  F  *  A  S  *  F  P  C  P  P  V  Q  G  *  Q  F  Q  :  H  R  C  T  K  S  K  E  C  L  C  G  F  *  N  L  L  R  R  E  E  H  *  R  :  V  C  A  M  S  A  A  G  E  T  *  I  F  S  C  E  E  Q  T  *  N  L  D  D   : A  G  E  A  N  L  G  G  W  W  *  D  S  *  P  V  I  A  R  C  *  *  F  E  V  H  I  L  R  E  R  *  *  R  E  K  L  A  V  E  M  R  F  K  I  A  G  L  *  *  L  *  M  Q  S  I  S  M  *  I  T  D  L  L  G  V  E  L  F  I  Q  F  *  L  L  N  F  L  T  L  E  W  F  T  V  L  *  P  L  S  S  R  T  F  Q  L  V  K  *  S  Y  Y  I  V  N  A  H  G  S  L  F  D  C  L  I  Y  E  *  V  V  S  I  N  K  L  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8205" stop="8410"/>
                    <exon start="8630" stop="8701"/>
                    <exon start="10572" stop="10644"/>
                    <exon start="11186" stop="11236"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFTFLCRFRKPYQQSDSSSVRNKLFLLFTFNRNIGSLVYYLVNCSQQQVVDFKQVDSHVHQFKGSSSSIGAQRVKNACVAFKTFCEGKNIEGCVQCLQQVKHEYFLVKNKLETLMMLEKQILAAGGRIPDLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="10571" e_stop="10644"/>
            <exon e_start="11186" e_stop="11567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10571" e_stop="10644" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="10645" i_stop="11185" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="11186" e_stop="11567" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10571" stop="10644"/>
              <exon start="11186" stop="11567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10609" stop="10644"/>
              <exon start="11186" stop="11567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGTGTGCAATGTCTGCAGCAGGTGAAACATGAATATTTTCTTGTGAAGAACAAACTTGAAACCTTGATGATG : CTGGAGAAGCAAATCTTGGCGGCTGGTGGTAGGATTCCTGACCTGTCATAGCTAGGTGCTAATGATTTGAAGTCCACATCCTGAGAGAAAGATAGTAGAGAGAAAAGTTGGCAGTAGAGATGAGATTCAAGATTGCTGGATTGTAATAGTTGTAGATGCAAAGTATTTCCATGTGAATAACAGACCTTTTAGGTGTTGAACTATTTATACAATTCTAGTTGTTGAACTTTTTAACCCTTGAATGGTTTACTGTGCTTTAGCCATTAAGTAGTAGAACTTTTCAGCTTGTTAAGTAGTCGTATTATATTGTAAATGCACATGGAAGTTTGTTTGACTGCTTGATATATGAGTAGGTAGTTTCAATAAACAAGTTGTCAGAAAA</gDNA_template>
            <first_frame> G  V  C  N  V  C  S  R  *  N  M  N  I  F  L  *  R  T  N  L  K  P  *  *  C :   W  R  S  K  S  W  R  L  V  V  G  F  L  T  C  H  S  *  V  L  M  I  *  S  P  H  P  E  R  K  I  V  E  R  K  V  G  S  R  D  E  I  Q  D  C  W  I  V  I  V  V  D  A  K  Y  F  H  V  N  N  R  P  F  R  C  *  T  I  Y  T  I  L  V  V  E  L  F  N  P  *  M  V  Y  C  A  L  A  I  K  *  *  N  F  S  A  C  *  V  V  V  L  Y  C  K  C  T  W  K  F  V  *  L  L  D  I  *  V  G  S  F  N  K  Q  V  V  R  K </first_frame>
            <second_frame>  V  C  A  M  S  A  A  G  E  T  *  I  F  S  C  E  E  Q  T  *  N  L  D  D   : A  G  E  A  N  L  G  G  W  W  *  D  S  *  P  V  I  A  R  C  *  *  F  E  V  H  I  L  R  E  R  *  *  R  E  K  L  A  V  E  M  R  F  K  I  A  G  L  *  *  L  *  M  Q  S  I  S  M  *  I  T  D  L  L  G  V  E  L  F  I  Q  F  *  L  L  N  F  L  T  L  E  W  F  T  V  L  *  P  L  S  S  R  T  F  Q  L  V  K  *  S  Y  Y  I  V  N  A  H  G  S  L  F  D  C  L  I  Y  E  *  V  V  S  I  N  K  L  S  E   </second_frame>
            <third_frame>   C  V  Q  C  L  Q  Q  V  K  H  E  Y  F  L  V  K  N  K  L  E  T  L  M  M  :  L  E  K  Q  I  L  A  A  G  G  R  I  P  D  L  S  *  L  G  A  N  D  L  K  S  T  S  *  E  K  D  S  R  E  K  S  W  Q  *  R  *  D  S  R  L  L  D  C  N  S  C  R  C  K  V  F  P  C  E  *  Q  T  F  *  V  L  N  Y  L  Y  N  S  S  C  *  T  F  *  P  L  N  G  L  L  C  F  S  H  *  V  V  E  L  F  S  L  L  S  S  R  I  I  L  *  M  H  M  E  V  C  L  T  A  *  Y  M  S  R  *  F  Q  *  T  S  C  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0066F23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14296" PGL_stop="14990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14296" e_stop="14990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14296" e_stop="14990" e_length="695"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14296" stop="14990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCTCTCCTAAACCATTAATTTCAGCCATAACCAACAAAGCTTTTGCTTTCTTGTGAAGCATTCCTACTTTTTTGCCTTTGCTGTTGGCAAAAAAGAAATAACCAACTTATATAAGCCTTTCCTATCATTCTTCTCTTCAGCTATACGATAATAATGATACCATTCTTTCTTCTGCTTCTTCTGCAGAGCACTAGTTTCTCTGTACATGCCATTTTAGACCCAATTGATTTCTTAGCTTTACAAGCGATTCGAAAAGGCTTGGATGATTTGCCCGGTTCCAACTATTTTGCTTCCTGGGATTTCACTTCGGAGCCCTGTAACTTCGCCGGAGTTTACTGCGATGGAGATAAAGTGATCGCCTTGAATCTCGGTGATCCCAGAGCCGGAGCACCAGGGTTAACTGGAAACTTGGATCCTTCTATTGGAAAACTCTCTGCTCTTGCGGAGTTCACGGTGGTTCCGGGTCGGATAACTGGTCCATTGCCCGAAAGTTTTTCTCAGTTGAAGAAGCTGAGATTTCTAGGAGTTAGCCGGAACTTTCTCTCCGGTGATATTCCGGCGTCATTAGGCCTTCTCCGGGAGCTACAAACTCTTGATCTTAGTTTCAATCAGCTGACCGGGAGCATCCCTTGGGCTATTGGAGCTCTTCCGGCATTGTCCAACATTATACTGTGTCACAACCACTTGTCCG</gDNA_template>
            <first_frame> F  F  S  P  K  P  L  I  S  A  I  T  N  K  A  F  A  F  L  *  S  I  P  T  F  L  P  L  L  L  A  K  K  K  *  P  T  Y  I  S  L  S  Y  H  S  S  L  Q  L  Y  D  N  N  D  T  I  L  S  S  A  S  S  A  E  H  *  F  L  C  T  C  H  F  R  P  N  *  F  L  S  F  T  S  D  S  K  R  L  G  *  F  A  R  F  Q  L  F  C  F  L  G  F  H  F  G  A  L  *  L  R  R  S  L  L  R  W  R  *  S  D  R  L  E  S  R  *  S  Q  S  R  S  T  R  V  N  W  K  L  G  S  F  Y  W  K  T  L  C  S  C  G  V  H  G  G  S  G  S  D  N  W  S  I  A  R  K  F  F  S  V  E  E  A  E  I  S  R  S  *  P  E  L  S  L  R  *  Y  S  G  V  I  R  P  S  P  G  A  T  N  S  *  S  *  F  Q  S  A  D  R  E  H  P  L  G  Y  W  S  S  S  G  I  V  Q  H  Y  T  V  S  Q  P  L  V   </first_frame>
            <second_frame>  S  S  L  L  N  H  *  F  Q  P  *  P  T  K  L  L  L  S  C  E  A  F  L  L  F  C  L  C  C  W  Q  K  R  N  N  Q  L  I  *  A  F  P  I  I  L  L  F  S  Y  T  I  I  M  I  P  F  F  L  L  L  L  L  Q  S  T  S  F  S  V  H  A  I  L  D  P  I  D  F  L  A  L  Q  A  I  R  K  G  L  D  D  L  P  G  S  N  Y  F  A  S  W  D  F  T  S  E  P  C  N  F  A  G  V  Y  C  D  G  D  K  V  I  A  L  N  L  G  D  P  R  A  G  A  P  G  L  T  G  N  L  D  P  S  I  G  K  L  S  A  L  A  E  F  T  V  V  P  G  R  I  T  G  P  L  P  E  S  F  S  Q  L  K  K  L  R  F  L  G  V  S  R  N  F  L  S  G  D  I  P  A  S  L  G  L  L  R  E  L  Q  T  L  D  L  S  F  N  Q  L  T  G  S  I  P  W  A  I  G  A  L  P  A  L  S  N  I  I  L  C  H  N  H  L  S  </second_frame>
            <third_frame>   L  L  S  *  T  I  N  F  S  H  N  Q  Q  S  F  C  F  L  V  K  H  S  Y  F  F  A  F  A  V  G  K  K  E  I  T  N  L  Y  K  P  F  L  S  F  F  S  S  A  I  R  *  *  *  Y  H  S  F  F  C  F  F  C  R  A  L  V  S  L  Y  M  P  F  *  T  Q  L  I  S  *  L  Y  K  R  F  E  K  A  W  M  I  C  P  V  P  T  I  L  L  P  G  I  S  L  R  S  P  V  T  S  P  E  F  T  A  M  E  I  K  *  S  P  *  I  S  V  I  P  E  P  E  H  Q  G  *  L  E  T  W  I  L  L  L  E  N  S  L  L  L  R  S  S  R  W  F  R  V  G  *  L  V  H  C  P  K  V  F  L  S  *  R  S  *  D  F  *  E  L  A  G  T  F  S  P  V  I  F  R  R  H  *  A  F  S  G  S  Y  K  L  L  I  L  V  S  I  S  *  P  G  A  S  L  G  L  L  E  L  F  R  H  C  P  T  L  Y  C  V  T  T  T  C  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14414" stop="14989"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFPIILLFSYTIIMIPFFLLLLLQSTSFSVHAILDPIDFLALQAIRKGLDDLPGSNYFASWDFTSEPCNFAGVYCDGDKVIALNLGDPRAGAPGLTGNLDPSIGKLSALAEFTVVPGRITGPLPESFSQLKKLRFLGVSRNFLSGDIPASLGLLRELQTLDLSFNQLTGSIPWAIGALPALSNIILCHNHLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23369" PGL_stop="19435"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23369" e_stop="22306"/>
            <exon e_start="19977" e_stop="19435"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="23369" e_stop="22306" e_length="1064"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="19977" e_stop="19435" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23369" stop="22591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23360" stop="22834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23353" stop="22908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23348" stop="22811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23347" stop="22494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23346" stop="22678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23346" stop="22756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23325" stop="22306"/>
              <exon start="19977" stop="19435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23318" stop="22706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23317" stop="22794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23317" stop="22908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23175" stop="22821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23148" stop="22399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23148" stop="22437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23148" stop="22482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23148" stop="22533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23148" stop="22881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23015" stop="22571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22931" stop="22306"/>
              <exon start="19977" stop="19960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22622" stop="22306"/>
              <exon start="19977" stop="19672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22560" stop="22306"/>
              <exon start="19977" stop="19566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22525" stop="22306"/>
              <exon start="19977" stop="19566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22520" stop="22306"/>
              <exon start="19977" stop="19559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22404" stop="22306"/>
              <exon start="19977" stop="19585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTTCTTCGACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGGAATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG : GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTGAGGGTATGAAGATGTTTATTGCGCATGTCTTTTATTGTATCGTCGTATCATAAATTTATAATTCTAATGAGAAGTTGCAGTGTTTTGAAGCTCGATTTAACAAAATAT</gDNA_template>
            <first_frame> L  S  S  S  T  V  L  P  N  F  H  T  D  S  P  A  L  N  I  S  I  T  I  G  I  Q  P  R  *  *  S  E  S  E  A  E  M  G  *  S  E  S  Q  L  T  T  H  M  P  Q  L  P  N  S  S  P  K  S  N  P  N  F  E  F  Q  F  N  R  K  P  Y  L  P  I  R  T  F  C  S  L  K  P  Q  M  I  G  L  A  S  L  I  W  T  T  L  I  H  P  S  P  L  S  I  L  L  T  V  L  S  F  I  L  L  T  R  V  S  A  Q  F  P  V  P  P  Y  S  P  P  V  H  S  V  E  R  *  P  W  T  T  *  L  L  N  K  C  E  L  L  D  K  R  T  L  T  A  N  S  F  P  S  I  V  M  P  P  M  P  F  N  I  M  S  M  K  H  S  P  L  L  S  K  G  V  V  L  C  M  V  Q  Y  P  L  K  A  K  W  K  S  I  L  F  M  S  R  P  S  K  G  P  R  K  I  C  C  F  Y  A  I  L  M  R  R  N  W  W  M  L  *  L  L  D  *  G  *  G  K  *  G  L  Y  L  L  R  Q  L  V  R  I  K  R  I  T  L  C  Q  L  Q  R  S  Y  R  Q  L  S  Y  I  R  R  V  I  *  R  N  G  *  P  L  *  *  S  L  R  *  M  T  M  A  L  P  M  Y  I  L  R  L  F  R  *  V  I  C  V  *  D  C  S  R  K  A  G  L  R  R  M  L  R  M  R  L  I  Q  S  F  P  R  *  R  K  M  W  W  *  E  S  R  T  Q  E  K  L  I  T  T  S  S  W  L  L  S  R  L  R  I  T  R :   V  H  F  L  H  H  F  P  L  K  T  G  L  F  Q  *  A  *  M  H  *  K  I  I  S  I  E  Q  R  V  F  L  L  *  S  E  S  Q  I  S  I  C  Y  C  C  W  R  N  F  W  T  L  M  Q  M  F  L  H  W  Q  N  V  C  L  H  S  Q  L  S  Q  K  V  T  S  S  L  *  N  R  W  L  V  P  L  K  Q  H  R  R  H  Q  V  P  V  M  T  F  S  *  V  V  T  C  V  A  V  Q  K  S  S  *  C  Y  I  Y  H  Q  *  A  V  W  I  L  L  L  N  Y  I  W  F  N  I  I  G  *  S  *  I  L  H  M  L  W  M  *  G  Y  E  D  V  Y  C  A  C  L  L  L  Y  R  R  I  I  N  L  *  F  *  *  E  V  A  V  F  *  S  S  I  *  Q  N   </first_frame>
            <second_frame>  F  L  L  R  R  S  S  P  T  S  I  Q  I  H  L  H  *  T  Y  Q  S  P  *  E  Y  N  Q  D  D  D  Q  N  Q  K  Q  R  W  V  R  A  S  H  N  *  Q  P  T  C  H  N  C  P  T  Q  V  P  N  R  I  P  T  S  S  S  S  S  I  A  N  P  I  F  Q  S  E  P  F  A  R  *  N  P  R  *  L  V  S  L  H  *  Y  G  Q  P  S  Y  T  H  L  L  F  Q  S  Y  S  R  F  Y  P  L  S  C  L  P  G  *  A  H  N  S  R  S  H  R  T  A  R  R  F  I  R  *  K  D  D  H  G  R  P  N  C  *  T  N  A  S  Y  *  T  R  E  P  S  L  R  T  R  F  L  R  S  *  C  R  Q  C  L  S  T  L  C  Q  *  N  T  R  L  C  C  Q  K  G  W  F  Y  V  W  Y  S  I  P  *  R  Q  S  G  S  P  F  Y  L  *  A  A  P  A  R  D  R  G  K  F  V  A  S  T  R  S  *  *  G  E  I  G  G  C  Y  S  Y  W  I  R  D  E  E  S  R  V  Y  I  Y  S  D  N  *  S  G  *  K  G  L  H  Y  V  N  C  R  G  L  T  G  S  *  V  T  F  G  G  *  F  E  G  M  G  D  R  Y  S  E  A  *  G  E  *  R  W  R  C  R  C  T  F  *  G  F  S  D  E  *  Y  V  C  E  I  V  Q  G  R  L  V  *  D  G  C  *  G  *  D  *  S  K  A  F  Q  D  E  E  R  C  G  G  R  S  Q  G  H  K  R  S  *  *  R  L  L  L  G  C  C  Q  D  C  G  S  P   : G  S  T  F  F  I  I  S  H  *  K  Q  D  Y  S  S  E  H  E  C  I  E  R  S  F  Q  S  N  K  E  S  F  F  C  E  A  N  L  R  F  P  S  A  T  V  A  G  E  I  S  G  H  *  C  R  C  S  C  I  G  R  M  C  A  Y  T  V  S  C  P  R  R  L  Q  A  P  Y  R  I  D  G  *  C  L  L  S  S  I  A  D  I  R  Y  Q  *  *  H  S  L  E  S  L  H  V  L  Q  C  R  N  P  L  N  V  I  F  T  T  N  E  L  F  G  Y  F  C  *  I  I  F  G  L  I  *  L  V  E  V  K  F  F  I  C  Y  G  C  E  G  M  K  M  F  I  A  H  V  F  Y  C  I  V  V  S  *  I  Y  N  S  N  E  K  L  Q  C  F  E  A  R  F  N  K  I  </second_frame>
            <third_frame>   F  F  F  D  G  P  P  Q  L  P  Y  R  F  T  C  T  K  H  I  N  H  H  R  N  T  T  K  M  M  I  R  I  R  S  R  D  G  L  E  R  V  T  I  D  N  P  H  A  T  I  A  Q  L  K  S  Q  I  E  S  Q  L  R  V  P  V  Q  S  Q  T  L  S  S  N  Q  N  L  L  L  A  K  T  P  D  D  W  S  R  F  T  D  M  D  N  P  H  T  P  I  S  S  F  N  L  T  H  G  S  I  L  Y  L  A  Y  Q  G  E  R  T  I  P  G  P  T  V  Q  P  A  G  S  F  G  R  K  M  T  M  D  D  L  I  A  K  Q  M  R  V  T  R  Q  E  N  P  H  C  E  L  V  S  F  D  R  D  A  A  N  A  F  Q  H  Y  V  N  E  T  L  A  F  A  V  K  R  G  G  F  M  Y  G  T  V  S  P  E  G  K  V  E  V  H  F  I  Y  E  P  P  Q  Q  G  T  E  E  N  L  L  L  L  R  D  P  D  E  E  K  L  V  D  A  I  A  I  G  L  G  M  R  K  V  G  F  I  F  T  Q  T  I  S  Q  D  K  K  D  Y  T  M  S  T  A  E  V  L  Q  A  A  E  L  H  S  E  G  D  L  K  E  W  V  T  A  I  V  K  L  E  V  N  D  D  G  A  A  D  V  H  F  E  A  F  Q  M  S  D  M  C  V  R  L  F  K  E  G  W  F  E  T  D  V  K  D  E  I  D  P  K  L  S  K  M  K  K  D  V  V  V  G  V  K  D  T  R  E  V  D  N  D  F  F  L  V  V  V  K  I  A  D  H  Q  :  G  P  L  S  S  S  F  P  I  E  N  R  I  I  P  V  S  M  N  A  L  K  D  H  F  N  R  T  K  S  L  S  F  V  K  R  I  S  D  F  H  L  L  L  L  L  A  K  F  L  D  I  N  A  D  V  P  A  L  A  E  C  V  L  T  Q  S  A  V  P  E  G  Y  K  L  L  I  E  S  M  A  S  A  S  *  A  A  S  Q  T  S  G  T  S  D  D  I  L  L  S  R  Y  M  C  C  S  A  E  I  L  L  M  L  Y  L  P  P  M  S  C  L  D  T  F  V  K  L  Y  L  V  *  Y  N  W  L  K  L  N  S  S  Y  V  M  D  V  R  V  *  R  C  L  L  R  M  S  F  I  V  S  S  Y  H  K  F  I  I  L  M  R  S  C  S  V  L  K  L  D  L  T  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23367" stop="22306"/>
                    <exon start="19977" stop="19723"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFDGPPQLPYRFTCTKHINHHRNTTKMMIRIRSRDGLERVTIDNPHATIAQLKSQIESQLRVPVQSQTLSSNQNLLLAKTPDDWSRFTDMDNPHTPISSFNLTHGSILYLAYQGERTIPGPTVQPAGSFGRKMTMDDLIAKQMRVTRQENPHCELVSFDRDAANAFQHYVNETLAFAVKRGGFMYGTVSPEGKVEVHFIYEPPQQGTEENLLLLRDPDEEKLVDAIAIGLGMRKVGFIFTQTISQDKKDYTMSTAEVLQAAELHSEGDLKEWVTAIVKLEVNDDGAADVHFEAFQMSDMCVRLFKEGWFETDVKDEIDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKIADHQGPLSSSFPIENRIIPVSMNALKDHFNRTKSLSFVKRISDFHLLLLLAKFLDINADVPALAECVLTQSAVPEGYKLLIESMASAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23198" e_stop="22993"/>
            <exon e_start="22761" e_stop="22306"/>
            <exon e_start="19977" e_stop="19559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23198" e_stop="22993" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22992" i_stop="22762" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22761" e_stop="22306" e_length="456"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22305" i_stop="19978" i_length="2328"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19977" e_stop="19559" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23198" stop="22993"/>
              <exon start="22761" stop="22306"/>
              <exon start="19977" stop="19847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22622" stop="22306"/>
              <exon start="19977" stop="19672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22560" stop="22306"/>
              <exon start="19977" stop="19566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22525" stop="22306"/>
              <exon start="19977" stop="19566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22520" stop="22306"/>
              <exon start="19977" stop="19559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22404" stop="22306"/>
              <exon start="19977" stop="19585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGAATCCCAACTTCGAGTTCCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAG : CCGCCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTTGTCAAGATTGCGGATCACCAG : GGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAGACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATCCTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTGGTTTAATATAATTGGTTGAAGTTAAATTCTTC</gDNA_template>
            <first_frame> S  N  P  N  F  E  F  Q  F  N  R  K  P  Y  L  P  I  R  T  F  C  S  L  K  P  Q  M  I  G  L  A  S  L  I  W  T  T  L  I  H  P  S  P  L  S  I  L  L  T  V  L  S  F  I  L  L  T  R  V  S  A  Q  F  P  V  P  P  Y  S :   R  P  S  K  G  P  R  K  I  C  C  F  Y  A  I  L  M  R  R  N  W  W  M  L  *  L  L  D  *  G  *  G  K  *  G  L  Y  L  L  R  Q  L  V  R  I  K  R  I  T  L  C  Q  L  Q  R  S  Y  R  Q  L  S  Y  I  R  R  V  I  *  R  N  G  *  P  L  *  *  S  L  R  *  M  T  M  A  L  P  M  Y  I  L  R  L  F  R  *  V  I  C  V  *  D  C  S  R  K  A  G  L  R  R  M  L  R  M  R  L  I  Q  S  F  P  R  *  R  K  M  W  W  *  E  S  R  T  Q  E  K  L  I  T  T  S  S  W  L  L  S  R  L  R  I  T  R :   V  H  F  L  H  H  F  P  L  K  T  G  L  F  Q  *  A  *  M  H  *  K  I  I  S  I  E  Q  R  V  F  L  L  *  S  E  S  Q  I  S  I  C  Y  C  C  W  R  N  F  W  T  L  M  Q  M  F  L  H  W  Q  N  V  C  L  H  S  Q  L  S  Q  K  V  T  S  S  L  *  N  R  W  L  V  P  L  K  Q  H  R  R  H  Q  V  P  V  M  T  F  S  *  V  V  T  C  V  A  V  Q  K  S  S  *  C  Y  I  Y  H  Q  *  A  V  W  I  L  L  L  N  Y  I  W  F  N  I  I  G  *  S  *  I  L  </first_frame>
            <second_frame>  R  I  P  T  S  S  S  S  S  I  A  N  P  I  F  Q  S  E  P  F  A  R  *  N  P  R  *  L  V  S  L  H  *  Y  G  Q  P  S  Y  T  H  L  L  F  Q  S  Y  S  R  F  Y  P  L  S  C  L  P  G  *  A  H  N  S  R  S  H  R  T   : A  A  P  A  R  D  R  G  K  F  V  A  S  T  R  S  *  *  G  E  I  G  G  C  Y  S  Y  W  I  R  D  E  E  S  R  V  Y  I  Y  S  D  N  *  S  G  *  K  G  L  H  Y  V  N  C  R  G  L  T  G  S  *  V  T  F  G  G  *  F  E  G  M  G  D  R  Y  S  E  A  *  G  E  *  R  W  R  C  R  C  T  F  *  G  F  S  D  E  *  Y  V  C  E  I  V  Q  G  R  L  V  *  D  G  C  *  G  *  D  *  S  K  A  F  Q  D  E  E  R  C  G  G  R  S  Q  G  H  K  R  S  *  *  R  L  L  L  G  C  C  Q  D  C  G  S  P   : G  S  T  F  F  I  I  S  H  *  K  Q  D  Y  S  S  E  H  E  C  I  E  R  S  F  Q  S  N  K  E  S  F  F  C  E  A  N  L  R  F  P  S  A  T  V  A  G  E  I  S  G  H  *  C  R  C  S  C  I  G  R  M  C  A  Y  T  V  S  C  P  R  R  L  Q  A  P  Y  R  I  D  G  *  C  L  L  S  S  I  A  D  I  R  Y  Q  *  *  H  S  L  E  S  L  H  V  L  Q  C  R  N  P  L  N  V  I  F  T  T  N  E  L  F  G  Y  F  C  *  I  I  F  G  L  I  *  L  V  E  V  K  F  F </second_frame>
            <third_frame>   E  S  Q  L  R  V  P  V  Q  S  Q  T  L  S  S  N  Q  N  L  L  L  A  K  T  P  D  D  W  S  R  F  T  D  M  D  N  P  H  T  P  I  S  S  F  N  L  T  H  G  S  I  L  Y  L  A  Y  Q  G  E  R  T  I  P  G  P  T  V  Q  :  P  P  Q  Q  G  T  E  E  N  L  L  L  L  R  D  P  D  E  E  K  L  V  D  A  I  A  I  G  L  G  M  R  K  V  G  F  I  F  T  Q  T  I  S  Q  D  K  K  D  Y  T  M  S  T  A  E  V  L  Q  A  A  E  L  H  S  E  G  D  L  K  E  W  V  T  A  I  V  K  L  E  V  N  D  D  G  A  A  D  V  H  F  E  A  F  Q  M  S  D  M  C  V  R  L  F  K  E  G  W  F  E  T  D  V  K  D  E  I  D  P  K  L  S  K  M  K  K  D  V  V  V  G  V  K  D  T  R  E  V  D  N  D  F  F  L  V  V  V  K  I  A  D  H  Q  :  G  P  L  S  S  S  F  P  I  E  N  R  I  I  P  V  S  M  N  A  L  K  D  H  F  N  R  T  K  S  L  S  F  V  K  R  I  S  D  F  H  L  L  L  L  L  A  K  F  L  D  I  N  A  D  V  P  A  L  A  E  C  V  L  T  Q  S  A  V  P  E  G  Y  K  L  L  I  E  S  M  A  S  A  S  *  A  A  S  Q  T  S  G  T  S  D  D  I  L  L  S  R  Y  M  C  C  S  A  E  I  L  L  M  L  Y  L  P  P  M  S  C  L  D  T  F  V  K  L  Y  L  V  *  Y  N  W  L  K  L  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23196" stop="22993"/>
                    <exon start="22761" stop="22306"/>
                    <exon start="19977" stop="19723"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESQLRVPVQSQTLSSNQNLLLAKTPDDWSRFTDMDNPHTPISSFNLTHGSILYLAYQGERTIPGPTVQPPQQGTEENLLLLRDPDEEKLVDAIAIGLGMRKVGFIFTQTISQDKKDYTMSTAEVLQAAELHSEGDLKEWVTAIVKLEVNDDGAADVHFEAFQMSDMCVRLFKEGWFETDVKDEIDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKIADHQGPLSSSFPIENRIIPVSMNALKDHFNRTKSLSFVKRISDFHLLLLLAKFLDINADVPALAECVLTQSAVPEGYKLLIESMASAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22500" PGL_stop="23197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22500" e_stop="22760"/>
            <exon e_start="22992" e_stop="23197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.330" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22500" e_stop="22760" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.330" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22761" i_stop="22991" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="22992" e_stop="23197" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22500" stop="22760"/>
              <exon start="22992" stop="23197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284336" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCGGCAGCGCCATCGTCATTCACCTCAAGCTTCACTATAGCGGTCACCCATTCCTTCAAATCACCCTCCGAATGTAACTCAGCTGCCTGTAAGACCTCTGCAGTTGACATAGTGTAATCCTTTTTATCCTGACTAATTGTCTGAGTAAATATAAACCCTACTTTCCTCATCCCTAATCCAATAGCTATAGCATCCACCAATTTCTCCTCATCAGGATCGCGTAGAAGCAACAAATTTTCCTCGGTCCCTTGCTGGGGCG : GCTGTACGGTGGGACCGGGAATTGTGCGCTCACCCTGGTAAGCAAGATAAAGGATAGAACCGTGAGTAAGATTGAAAGAGGAGATGGGTGTATGAGGGTTGTCCATATCAGTGAAGCGAGACCAATCATCTGGGGTTTTAGCGAGCAAAAGGTTCTGATTGGAAGATAGGGTTTGCGATTGAACTGGAACTCGAAGTTGGGATTCG</gDNA_template>
            <first_frame> H  R  Q  R  H  R  H  S  P  Q  A  S  L  *  R  S  P  I  P  S  N  H  P  P  N  V  T  Q  L  P  V  R  P  L  Q  L  T  *  C  N  P  F  Y  P  D  *  L  S  E  *  I  *  T  L  L  S  S  S  L  I  Q  *  L  *  H  P  P  I  S  P  H  Q  D  R  V  E  A  T  N  F  P  R  S  L  A  G  A  :  A  V  R  W  D  R  E  L  C  A  H  P  G  K  Q  D  K  G  *  N  R  E  *  D  *  K  R  R  W  V  Y  E  G  C  P  Y  Q  *  S  E  T  N  H  L  G  F  *  R  A  K  G  S  D  W  K  I  G  F  A  I  E  L  E  L  E  V  G  I   </first_frame>
            <second_frame>  I  G  S  A  I  V  I  H  L  K  L  H  Y  S  G  H  P  F  L  Q  I  T  L  R  M  *  L  S  C  L  *  D  L  C  S  *  H  S  V  I  L  F  I  L  T  N  C  L  S  K  Y  K  P  Y  F  P  H  P  *  S  N  S  Y  S  I  H  Q  F  L  L  I  R  I  A  *  K  Q  Q  I  F  L  G  P  L  L  G  R :   L  Y  G  G  T  G  N  C  A  L  T  L  V  S  K  I  K  D  R  T  V  S  K  I  E  R  G  D  G  C  M  R  V  V  H  I  S  E  A  R  P  I  I  W  G  F  S  E  Q  K  V  L  I  G  R  *  G  L  R  L  N  W  N  S  K  L  G  F  </second_frame>
            <third_frame>   S  A  A  P  S  S  F  T  S  S  F  T  I  A  V  T  H  S  F  K  S  P  S  E  C  N  S  A  A  C  K  T  S  A  V  D  I  V  *  S  F  L  S  *  L  I  V  *  V  N  I  N  P  T  F  L  I  P  N  P  I  A  I  A  S  T  N  F  S  S  S  G  S  R  R  S  N  K  F  S  S  V  P  C  W  G   : G  C  T  V  G  P  G  I  V  R  S  P  W  *  A  R  *  R  I  E  P  *  V  R  L  K  E  E  M  G  V  *  G  L  S  I  S  V  K  R  D  Q  S  S  G  V  L  A  S  K  R  F  *  L  E  D  R  V  C  D  *  T  G  T  R  S  W  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22726" stop="22760"/>
                    <exon start="22992" stop="23160"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQIFLGPLLGRLYGGTGNCALTLVSKIKDRTVSKIERGDGCMRVVHISEARPIIWGFSEQKVLIGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33172" PGL_stop="31122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33172" e_stop="32961"/>
            <exon e_start="32728" e_stop="32629"/>
            <exon e_start="32560" e_stop="32001"/>
            <exon e_start="31932" e_stop="31869"/>
            <exon e_start="31206" e_stop="31122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.374" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.931" e_score="0.969"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33172" e_stop="32961" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.374" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32960" i_stop="32729" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32728" e_stop="32629" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32628" i_stop="32561" i_length="68"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="32560" e_stop="32001" e_length="560"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32000" i_stop="31933" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="31932" e_stop="31869" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.931">
            <gDNA_intron_boundary i_start="31868" i_stop="31207" i_length="662"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="31206" e_stop="31122" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33172" stop="32961"/>
              <exon start="32728" stop="32629"/>
              <exon start="32560" stop="32132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33144" stop="32961"/>
              <exon start="32728" stop="32629"/>
              <exon start="32560" stop="32116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33113" stop="32961"/>
              <exon start="32728" stop="32629"/>
              <exon start="32560" stop="32101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33073" stop="32961"/>
              <exon start="32728" stop="32629"/>
              <exon start="32560" stop="32177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32226" stop="32001"/>
              <exon start="31932" stop="31869"/>
              <exon start="31206" stop="31122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGATATTATTATGGGTTTGAAGAATGACTTGGTGGTGTACACAAGATTAGAATGTGAGAGCTGTGAGGAAATGACTTGTTGTATAGAGAAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGACGACTTCACTTTCTCTGACATTTCACAACTTGAAGAACTACTCAAGCAAAGAAGTTTACCATCCATAGTTTCTTTCAG : GCCAAAATCTCCGATAAATTCTGAGGGCAAGAAAACATGTATCCAAGTTCTCAAATTAGCTGTGGAATTGGACGTTGAGTTCGTCGAAGTCGACACTCAG : GTTGTCTGCCATCAAGTGGTTGCTGAATTGATGAAGAGCCGATCAAATAGCAAAATAATTGCTTCTACTTATGTCAATGGTGGAAACCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCCACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGACGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGGTCCCTCTAATTGTTAGGGCAGCAGGGGATAGAGGACTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTGGGAGGCAAATACACCCCTGGCTTGCCATCTTTGACCACCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAATTTTTGGTGTTATCTCAAATCCTGTTGGCCATAGCAAGGGACCCCTTCTACACAACCCCGCCTTTAGGCATACAGGATACAATGGAATATATGTCCCACTACTAGTTGACAATGTCAAGGAATTCTTTCGGGTTTTCTCATGCAATGACTATGCTGGTTTCAG : TGTTGGTATCCCACATAAGGAAGCAGCAGTACGGTGTTGTGATGAAGTTGATCCACTTGCTAAG : TCTATAGGAGCTGTAAACACAATTATAAGGAGGCCTTCTGACGGCAAGCTCATTGGTTATAATACAGATTGTGAGGCTTGTGTGA</gDNA_template>
            <first_frame> R  D  I  I  M  G  L  K  N  D  L  V  V  Y  T  R  L  E  C  E  S  C  E  E  M  T  C  C  I  E  K  A  K  E  E  G  A  D  L  V  E  L  C  I  D  D  F  T  F  S  D  I  S  Q  L  E  E  L  L  K  Q  R  S  L  P  S  I  V  S  F  R :   P  K  S  P  I  N  S  E  G  K  K  T  C  I  Q  V  L  K  L  A  V  E  L  D  V  E  F  V  E  V  D  T  Q  :  V  V  C  H  Q  V  V  A  E  L  M  K  S  R  S  N  S  K  I  I  A  S  T  Y  V  N  G  G  N  P  T  K  D  T  L  C  N  S  I  I  N  L  Q  S  T  G  A  D  I  I  K  L  V  I  D  V  A  Y  I  T  D  V  A  P  V  F  H  M  L  T  H  S  Q  V  P  L  I  V  R  A  A  G  D  R  G  L  I  S  Q  L  L  G  P  K  Y  G  A  F  F  V  C  G  S  L  G  G  K  Y  T  P  G  L  P  S  L  T  T  I  K  Q  V  Y  K  L  Q  Y  V  N  P  D  T  R  I  F  G  V  I  S  N  P  V  G  H  S  K  G  P  L  L  H  N  P  A  F  R  H  T  G  Y  N  G  I  Y  V  P  L  L  V  D  N  V  K  E  F  F  R  V  F  S  C  N  D  Y  A  G  F  S :   V  G  I  P  H  K  E  A  A  V  R  C  C  D  E  V  D  P  L  A  K  :  S  I  G  A  V  N  T  I  I  R  R  P  S  D  G  K  L  I  G  Y  N  T  D  C  E  A  C  V  </first_frame>
            <second_frame>  E  I  L  L  W  V  *  R  M  T  W  W  C  T  Q  D  *  N  V  R  A  V  R  K  *  L  V  V  *  R  K  L  K  K  K  E  Q  I  W  W  S  F  A  L  T  T  S  L  S  L  T  F  H  N  L  K  N  Y  S  S  K  E  V  Y  H  P  *  F  L  S   : G  Q  N  L  R  *  I  L  R  A  R  K  H  V  S  K  F  S  N  *  L  W  N  W  T  L  S  S  S  K  S  T  L  R :   L  S  A  I  K  W  L  L  N  *  *  R  A  D  Q  I  A  K  *  L  L  L  L  M  S  M  V  E  T  L  L  K  T  H  F  V  I  P  S  *  T  C  S  P  Q  E  Q  I  S  S  N  L  S  L  M  *  L  I  L  Q  T  L  H  Q  F  S  I  C  L  H  I  L  R  S  L  *  L  L  G  Q  Q  G  I  E  D  L  *  A  N  Y  W  V  Q  N  T  V  L  S  L  F  V  D  L  W  E  A  N  T  P  L  A  C  H  L  *  P  P  L  N  R  F  I  N  S  N  M  S  T  Q  I  L  E  F  L  V  L  S  Q  I  L  L  A  I  A  R  D  P  F  Y  T  T  P  P  L  G  I  Q  D  T  M  E  Y  M  S  H  Y  *  L  T  M  S  R  N  S  F  G  F  S  H  A  M  T  M  L  V  S   : V  L  V  S  H  I  R  K  Q  Q  Y  G  V  V  M  K  L  I  H  L  L  S :   L  *  E  L  *  T  Q  L  *  G  G  L  L  T  A  S  S  L  V  I  I  Q  I  V  R  L  V  * </second_frame>
            <third_frame>   R  Y  Y  Y  G  F  E  E  *  L  G  G  V  H  K  I  R  M  *  E  L  *  G  N  D  L  L  Y  R  E  S  *  R  R  R  S  R  S  G  G  A  L  H  *  R  L  H  F  L  *  H  F  T  T  *  R  T  T  Q  A  K  K  F  T  I  H  S  F  F  Q  :  A  K  I  S  D  K  F  *  G  Q  E  N  M  Y  P  S  S  Q  I  S  C  G  I  G  R  *  V  R  R  S  R  H  S   : G  C  L  P  S  S  G  C  *  I  D  E  E  P  I  K  *  Q  N  N  C  F  Y  L  C  Q  W  W  K  P  Y  *  R  H  T  L  *  F  H  H  K  P  A  V  H  R  S  R  Y  H  Q  T  C  H  *  C  S  L  Y  Y  R  R  C  T  S  F  P  Y  A  Y  T  F  S  G  P  S  N  C  *  G  S  R  G  *  R  T  Y  K  P  T  I  G  S  K  I  R  C  F  L  C  L  W  I  F  G  R  Q  I  H  P  W  L  A  I  F  D  H  H  *  T  G  L  *  T  P  I  C  Q  P  R  Y  *  N  F  W  C  Y  L  K  S  C  W  P  *  Q  G  T  P  S  T  Q  P  R  L  *  A  Y  R  I  Q  W  N  I  C  P  T  T  S  *  Q  C  Q  G  I  L  S  G  F  L  M  Q  *  L  C  W  F  Q  :  C  W  Y  P  T  *  G  S  S  S  T  V  L  *  *  S  *  S  T  C  *   : V  Y  R  S  C  K  H  N  Y  K  E  A  F  *  R  Q  A  H  W  L  *  Y  R  L  *  G  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33172" stop="32961"/>
                    <exon start="32728" stop="32629"/>
                    <exon start="32560" stop="32001"/>
                    <exon start="31932" stop="31869"/>
                    <exon start="31206" stop="31123"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDIIMGLKNDLVVYTRLECESCEEMTCCIEKAKEEGADLVELCIDDFTFSDISQLEELLKQRSLPSIVSFRPKSPINSEGKKTCIQVLKLAVELDVEFVEVDTQVVCHQVVAELMKSRSNSKIIASTYVNGGNPTKDTLCNSIINLQSTGADIIKLVIDVAYITDVAPVFHMLTHSQVPLIVRAAGDRGLISQLLGPKYGAFFVCGSLGGKYTPGLPSLTTIKQVYKLQYVNPDTRIFGVISNPVGHSKGPLLHNPAFRHTGYNGIYVPLLVDNVKEFFRVFSCNDYAGFSVGIPHKEAAVRCCDEVDPLAKSIGAVNTIIRRPSDGKLIGYNTDCEACV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="40495" PGL_stop="38136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40495" e_stop="40226"/>
            <exon e_start="38625" e_stop="38136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.787" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40495" e_stop="40226" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.787">
            <gDNA_intron_boundary i_start="40225" i_stop="38626" i_length="1600"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38625" e_stop="38136" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40495" stop="40226"/>
              <exon start="38625" stop="38137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40480" stop="40226"/>
              <exon start="38625" stop="38136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40480" stop="40226"/>
              <exon start="38625" stop="38282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40442" stop="40226"/>
              <exon start="38625" stop="38136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372190" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGAAGAAAAATGGCGTGGCCACTGCTCACAGTCTCAGGCTGCTACTGTCTTGGCCTCTCACAACTTCATGTTAATGTCCAACTCCAACCAATTACACGTCGTGAAATCGTACACCCATCTATTCATCAATGTATACTTTCTGTCGATAGAATTAGAGCAAGACTCCCGCTTTTAAATGCTCAAACCAATGGAGACTACGACTCTGAGCAGCTAATTGAAGATCTTAGGGTTCCTCAACAGTGGCTACAACCTTCCAAAGCCTTGGAG : GAATCTGAATGGCTGCAAACTGCTCTTAACAAGTGGTTGGATGATGAATATTGTCCAGAGGAAACAAATATTGAGATTAGCAGAATTGCTGCAAATTCATTCTACAGATCATTACTGGAAAATAAAAGTGACATAGGTGAGATACTGTTAACGATGGCTGGAGATTTGGAATCCATATCCTATCAAGAAAGCTTTCATGGAGCATTCTCATCAGCAAATGCAGCAGTGAATCTCATAATCCAACGGCTTGAACAGTACTGATCAAGATTGGCCTCACCCAAAAGTTTTCTCTGAGTTGCATTGATCAGAATTATCCTTTTATAGTGTAGTAAGTACATTATGATTAAGAGAAACATGCTTACACCAATAAGGTTAGAAGGGGCTTATATTGGGGGGAGAAGATTTGAGTTTTAGAACGTGAAGCATGAACCAATGGTGTTATGTTAAGATATGTGTCAGTCATCTCAAAATCAAGTTATATTTTATGAGT</gDNA_template>
            <first_frame> R  R  R  K  M  A  W  P  L  L  T  V  S  G  C  Y  C  L  G  L  S  Q  L  H  V  N  V  Q  L  Q  P  I  T  R  R  E  I  V  H  P  S  I  H  Q  C  I  L  S  V  D  R  I  R  A  R  L  P  L  L  N  A  Q  T  N  G  D  Y  D  S  E  Q  L  I  E  D  L  R  V  P  Q  Q  W  L  Q  P  S  K  A  L  E  :  E  S  E  W  L  Q  T  A  L  N  K  W  L  D  D  E  Y  C  P  E  E  T  N  I  E  I  S  R  I  A  A  N  S  F  Y  R  S  L  L  E  N  K  S  D  I  G  E  I  L  L  T  M  A  G  D  L  E  S  I  S  Y  Q  E  S  F  H  G  A  F  S  S  A  N  A  A  V  N  L  I  I  Q  R  L  E  Q  Y  *  S  R  L  A  S  P  K  S  F  L  *  V  A  L  I  R  I  I  L  L  *  C  S  K  Y  I  M  I  K  R  N  M  L  T  P  I  R  L  E  G  A  Y  I  G  G  R  R  F  E  F  *  N  V  K  H  E  P  M  V  L  C  *  D  M  C  Q  S  S  Q  N  Q  V  I  F  Y  E  </first_frame>
            <second_frame>  E  E  E  K  W  R  G  H  C  S  Q  S  Q  A  A  T  V  L  A  S  H  N  F  M  L  M  S  N  S  N  Q  L  H  V  V  K  S  Y  T  H  L  F  I  N  V  Y  F  L  S  I  E  L  E  Q  D  S  R  F  *  M  L  K  P  M  E  T  T  T  L  S  S  *  L  K  I  L  G  F  L  N  S  G  Y  N  L  P  K  P  W  R :   N  L  N  G  C  K  L  L  L  T  S  G  W  M  M  N  I  V  Q  R  K  Q  I  L  R  L  A  E  L  L  Q  I  H  S  T  D  H  Y  W  K  I  K  V  T  *  V  R  Y  C  *  R  W  L  E  I  W  N  P  Y  P  I  K  K  A  F  M  E  H  S  H  Q  Q  M  Q  Q  *  I  S  *  S  N  G  L  N  S  T  D  Q  D  W  P  H  P  K  V  F  S  E  L  H  *  S  E  L  S  F  Y  S  V  V  S  T  L  *  L  R  E  T  C  L  H  Q  *  G  *  K  G  L  I  L  G  G  E  D  L  S  F  R  T  *  S  M  N  Q  W  C  Y  V  K  I  C  V  S  H  L  K  I  K  L  Y  F  M  S </second_frame>
            <third_frame>   K  K  K  N  G  V  A  T  A  H  S  L  R  L  L  L  S  W  P  L  T  T  S  C  *  C  P  T  P  T  N  Y  T  S  *  N  R  T  P  I  Y  S  S  M  Y  T  F  C  R  *  N  *  S  K  T  P  A  F  K  C  S  N  Q  W  R  L  R  L  *  A  A  N  *  R  S  *  G  S  S  T  V  A  T  T  F  Q  S  L  G   : G  I  *  M  A  A  N  C  S  *  Q  V  V  G  *  *  I  L  S  R  G  N  K  Y  *  D  *  Q  N  C  C  K  F  I  L  Q  I  I  T  G  K  *  K  *  H  R  *  D  T  V  N  D  G  W  R  F  G  I  H  I  L  S  R  K  L  S  W  S  I  L  I  S  K  C  S  S  E  S  H  N  P  T  A  *  T  V  L  I  K  I  G  L  T  Q  K  F  S  L  S  C  I  D  Q  N  Y  P  F  I  V  *  *  V  H  Y  D  *  E  K  H  A  Y  T  N  K  V  R  R  G  L  Y  W  G  E  K  I  *  V  L  E  R  E  A  *  T  N  G  V  M  L  R  Y  V  S  V  I  S  K  S  S  Y  I  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40495" stop="40226"/>
                    <exon start="38625" stop="38365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRKMAWPLLTVSGCYCLGLSQLHVNVQLQPITRREIVHPSIHQCILSVDRIRARLPLLNAQTNGDYDSEQLIEDLRVPQQWLQPSKALEESEWLQTALNKWLDDEYCPEETNIEISRIAANSFYRSLLENKSDIGEILLTMAGDLESISYQESFHGAFSSANAAVNLIIQRLEQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="40616" PGL_stop="45386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40616" e_stop="40798"/>
            <exon e_start="42477" e_stop="42650"/>
            <exon e_start="43120" e_stop="43170"/>
            <exon e_start="43644" e_stop="43717"/>
            <exon e_start="43935" e_stop="43998"/>
            <exon e_start="45117" e_stop="45161"/>
            <exon e_start="45325" e_stop="45386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.477" e_score="0.814"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.956"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.814">
            <gDNA_exon_boundary e_start="40616" e_stop="40798" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.477">
            <gDNA_intron_boundary i_start="40799" i_stop="42476" i_length="1678"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="42477" e_stop="42650" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42651" i_stop="43119" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43120" e_stop="43170" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.727">
            <gDNA_intron_boundary i_start="43171" i_stop="43643" i_length="473"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="43644" e_stop="43717" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43718" i_stop="43934" i_length="217"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="43935" e_stop="43998" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43999" i_stop="45116" i_length="1118"/>
          </intron>
          <exon e_serial="6" e_score="0.956">
            <gDNA_exon_boundary e_start="45117" e_stop="45161" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="45162" i_stop="45324" i_length="163"/>
          </intron>
          <exon e_serial="7" e_score="0.968">
            <gDNA_exon_boundary e_start="45325" e_stop="45386" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40616" stop="40798"/>
              <exon start="42477" stop="42650"/>
              <exon start="43120" stop="43170"/>
              <exon start="43644" stop="43717"/>
              <exon start="43935" stop="43998"/>
              <exon start="45117" stop="45161"/>
              <exon start="45325" stop="45386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAAACAGCACAAAAAAATGGCCGCCGCAAACAGCTGGTTCTCGGTGCTCACCTCCACCGGCGGCTATCTTACATCTCACCGTCTCTTTTCAACATCACTAACATCCTCTTCTTTCTTCATTCCCCAAAATCAAAACTATAAGAGGCAAGTTCTCAACAAGTCATCCTCCTCTCCTCCTGAG : AAAGTAGCTGGTAAACAGAAGTTTTCACGGAGATCAAAAAATGAAGGGCCTTTTGCAAATGCAGATGGCAGGAGCAGTACAAGTGAAAACGGACGATCTCAATCAACAGCAATTAAATCATTTGGTCTGCAGAAAAAAGGGAAAGGAGTTCTGTTAGATTCGAAGGACCAGCAG : GTAGAAACTGGCAGCATTCAAGATGCAGCTTTTCTTAATGCCGTTGTGAAG : GTTTACTGTACACATACTGCTCCAGATTATTCCCTTCCTTGGCAGAAACAAAGACAATTCACAAGTACTGGAAG : TGCTTTCATGATTGGTGATGGGAAGCTCTTGACGAATGCACATTGTGTTGAACATGATACACAG : GTCAAAGTGAAGAAAAGGGGAGATGACACAAAATACGTTGCTAAG : GTTCTAGCTAGAGGGGTAGCGTGTGACTTAGCTTTGCTATCCGTGGAAAGCAAGGAATTTTG</gDNA_template>
            <first_frame> G  K  Q  H  K  K  M  A  A  A  N  S  W  F  S  V  L  T  S  T  G  G  Y  L  T  S  H  R  L  F  S  T  S  L  T  S  S  S  F  F  I  P  Q  N  Q  N  Y  K  R  Q  V  L  N  K  S  S  S  S  P  P  E  :  K  V  A  G  K  Q  K  F  S  R  R  S  K  N  E  G  P  F  A  N  A  D  G  R  S  S  T  S  E  N  G  R  S  Q  S  T  A  I  K  S  F  G  L  Q  K  K  G  K  G  V  L  L  D  S  K  D  Q  Q  :  V  E  T  G  S  I  Q  D  A  A  F  L  N  A  V  V  K  :  V  Y  C  T  H  T  A  P  D  Y  S  L  P  W  Q  K  Q  R  Q  F  T  S  T  G  S :   A  F  M  I  G  D  G  K  L  L  T  N  A  H  C  V  E  H  D  T  Q  :  V  K  V  K  K  R  G  D  D  T  K  Y  V  A  K  :  V  L  A  R  G  V  A  C  D  L  A  L  L  S  V  E  S  K  E  F   </first_frame>
            <second_frame>  G  N  S  T  K  K  W  P  P  Q  T  A  G  S  R  C  S  P  P  P  A  A  I  L  H  L  T  V  S  F  Q  H  H  *  H  P  L  L  S  S  F  P  K  I  K  T  I  R  G  K  F  S  T  S  H  P  P  L  L  L  R :   K  *  L  V  N  R  S  F  H  G  D  Q  K  M  K  G  L  L  Q  M  Q  M  A  G  A  V  Q  V  K  T  D  D  L  N  Q  Q  Q  L  N  H  L  V  C  R  K  K  G  K  E  F  C  *  I  R  R  T  S  R :   *  K  L  A  A  F  K  M  Q  L  F  L  M  P  L  *  R :   F  T  V  H  I  L  L  Q  I  I  P  F  L  G  R  N  K  D  N  S  Q  V  L  E   : V  L  S  *  L  V  M  G  S  S  *  R  M  H  I  V  L  N  M  I  H  R :   S  K  *  R  K  G  E  M  T  Q  N  T  L  L  R :   F  *  L  E  G  *  R  V  T  *  L  C  Y  P  W  K  A  R  N  F  </second_frame>
            <third_frame>   E  T  A  Q  K  N  G  R  R  K  Q  L  V  L  G  A  H  L  H  R  R  L  S  Y  I  S  P  S  L  F  N  I  T  N  I  L  F  F  L  H  S  P  K  S  K  L  *  E  A  S  S  Q  Q  V  I  L  L  S  S  *   : E  S  S  W  *  T  E  V  F  T  E  I  K  K  *  R  A  F  C  K  C  R  W  Q  E  Q  Y  K  *  K  R  T  I  S  I  N  S  N  *  I  I  W  S  A  E  K  R  E  R  S  S  V  R  F  E  G  P  A   : G  R  N  W  Q  H  S  R  C  S  F  S  *  C  R  C  E   : G  L  L  Y  T  Y  C  S  R  L  F  P  S  L  A  E  T  K  T  I  H  K  Y  W  K  :  C  F  H  D  W  *  W  E  A  L  D  E  C  T  L  C  *  T  *  Y  T   : G  Q  S  E  E  K  G  R  *  H  K  I  R  C  *   : G  S  S  *  R  G  S  V  *  L  S  F  A  I  R  G  K  Q  G  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40616" stop="40798"/>
                    <exon start="42477" stop="42650"/>
                    <exon start="43120" stop="43170"/>
                    <exon start="43644" stop="43717"/>
                    <exon start="43935" stop="43998"/>
                    <exon start="45117" stop="45161"/>
                    <exon start="45325" stop="45384"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKQHKKMAAANSWFSVLTSTGGYLTSHRLFSTSLTSSSFFIPQNQNYKRQVLNKSSSSPPEKVAGKQKFSRRSKNEGPFANADGRSSTSENGRSQSTAIKSFGLQKKGKGVLLDSKDQQVETGSIQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIGDGKLLTNAHCVEHDTQVKVKKRGDDTKYVAKVLARGVACDLALLSVESKEF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="49904" PGL_stop="54122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49904" e_stop="49952"/>
            <exon e_start="50113" e_stop="50171"/>
            <exon e_start="50724" e_stop="50823"/>
            <exon e_start="51615" e_stop="51694"/>
            <exon e_start="52397" e_stop="52453"/>
            <exon e_start="53383" e_stop="53486"/>
            <exon e_start="53927" e_stop="54014"/>
            <exon e_start="54109" e_stop="54122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.817" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.964" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.908" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.630" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.865" acc_prob="0.975" e_score="0.955"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49904" e_stop="49952" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.817" acc_prob="0.883">
            <gDNA_intron_boundary i_start="49953" i_stop="50112" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="50113" e_stop="50171" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.964">
            <gDNA_intron_boundary i_start="50172" i_stop="50723" i_length="552"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="50724" e_stop="50823" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50824" i_stop="51614" i_length="791"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51615" e_stop="51694" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.908" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51695" i_stop="52396" i_length="702"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52397" e_stop="52453" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52454" i_stop="53382" i_length="929"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="53383" e_stop="53486" e_length="104"/>
          </exon>
          <intron i_serial="6" don_prob="0.630" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53487" i_stop="53926" i_length="440"/>
          </intron>
          <exon e_serial="7" e_score="0.955">
            <gDNA_exon_boundary e_start="53927" e_stop="54014" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.865" acc_prob="0.975">
            <gDNA_intron_boundary i_start="54015" i_stop="54108" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="0.929">
            <gDNA_exon_boundary e_start="54109" e_stop="54122" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49904" stop="49952"/>
              <exon start="50113" stop="50171"/>
              <exon start="50724" stop="50823"/>
              <exon start="51615" stop="51694"/>
              <exon start="52397" stop="52453"/>
              <exon start="53383" stop="53486"/>
              <exon start="53927" stop="54014"/>
              <exon start="54109" stop="54122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATCATCTGAGCTGCTGGGCATTCAAATAGATGCAGCAATAAATCCTG : GTAATAGTGGTGGTCCTGCATTCAATGATGACGGAGATTGCATTGGAGTTGCATTTCAG : GTTTACAGATCCGATGATGCTGAAAATATTGGTTATGTAATACCTACTACAGTTGTATCTCATTTTTTGGAAGACTACGAGAGGAATGGGAAGTATTGCG : GCTTTCCTTGCCTTGGGGTGTTGTTGCAAAAATTGGAGAATCCAGCGCTACGTGCCTGCTTAAAAGTGCCATCTAACGAG : GGTGTACTCGTCCGGAAAGTTGAGCCCACTTCTGACATCAGTAATGTTGTGAAAGAG : GGCGATGTCATTGTTAGCTTTGATGGTGTTCATGTTGGGTGTGAAGGAACAGTGCCGTTTCGATCAAGTGAACGTATAGCTTTTCGCTATCTCATTAGTCAAAA : ATTCACTGGTGATTCAGTTGAGCTTGGTATCATTAGAGCGGGAGAATTCATGAAAGTTCAAGCAATTTTGAAGCCACGTGTGCATTTG : GTTCCTTATCACAT</gDNA_template>
            <first_frame> G  S  S  E  L  L  G  I  Q  I  D  A  A  I  N  P   : G  N  S  G  G  P  A  F  N  D  D  G  D  C  I  G  V  A  F  Q  :  V  Y  R  S  D  D  A  E  N  I  G  Y  V  I  P  T  T  V  V  S  H  F  L  E  D  Y  E  R  N  G  K  Y  C   : G  F  P  C  L  G  V  L  L  Q  K  L  E  N  P  A  L  R  A  C  L  K  V  P  S  N  E  :  G  V  L  V  R  K  V  E  P  T  S  D  I  S  N  V  V  K  E  :  G  D  V  I  V  S  F  D  G  V  H  V  G  C  E  G  T  V  P  F  R  S  S  E  R  I  A  F  R  Y  L  I  S  Q  K :   F  T  G  D  S  V  E  L  G  I  I  R  A  G  E  F  M  K  V  Q  A  I  L  K  P  R  V  H  L  :  V  P  Y  H   </first_frame>
            <second_frame>  D  H  L  S  C  W  A  F  K  *  M  Q  Q  *  I  L  :  V  I  V  V  V  L  H  S  M  M  T  E  I  A  L  E  L  H  F  R :   F  T  D  P  M  M  L  K  I  L  V  M  *  Y  L  L  Q  L  Y  L  I  F  W  K  T  T  R  G  M  G  S  I  A  :  A  F  L  A  L  G  C  C  C  K  N  W  R  I  Q  R  Y  V  P  A  *  K  C  H  L  T  R :   V  Y  S  S  G  K  L  S  P  L  L  T  S  V  M  L  *  K  R :   A  M  S  L  L  A  L  M  V  F  M  L  G  V  K  E  Q  C  R  F  D  Q  V  N  V  *  L  F  A  I  S  L  V  K   : N  S  L  V  I  Q  L  S  L  V  S  L  E  R  E  N  S  *  K  F  K  Q  F  *  S  H  V  C  I  W :   F  L  I  T  </second_frame>
            <third_frame>   I  I  *  A  A  G  H  S  N  R  C  S  N  K  S  W :   *  *  W  W  S  C  I  Q  *  *  R  R  L  H  W  S  C  I  S   : G  L  Q  I  R  *  C  *  K  Y  W  L  C  N  T  Y  Y  S  C  I  S  F  F  G  R  L  R  E  E  W  E  V  L  R :   L  S  L  P  W  G  V  V  A  K  I  G  E  S  S  A  T  C  L  L  K  S  A  I  *  R   : G  C  T  R  P  E  S  *  A  H  F  *  H  Q  *  C  C  E  R   : G  R  C  H  C  *  L  *  W  C  S  C  W  V  *  R  N  S  A  V  S  I  K  *  T  Y  S  F  S  L  S  H  *  S  K  :  I  H  W  *  F  S  *  A  W  Y  H  *  S  G  R  I  H  E  S  S  S  N  F  E  A  T  C  A  F   : G  S  L  S  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49904" stop="49952"/>
                    <exon start="50113" stop="50171"/>
                    <exon start="50724" stop="50823"/>
                    <exon start="51615" stop="51694"/>
                    <exon start="52397" stop="52453"/>
                    <exon start="53383" stop="53486"/>
                    <exon start="53927" stop="54014"/>
                    <exon start="54109" stop="54120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSSELLGIQIDAAINPGNSGGPAFNDDGDCIGVAFQVYRSDDAENIGYVIPTTVVSHFLEDYERNGKYCGFPCLGVLLQKLENPALRACLKVPSNEGVLVRKVEPTSDISNVVKEGDVIVSFDGVHVGCEGTVPFRSSERIAFRYLISQKFTGDSVELGIIRAGEFMKVQAILKPRVHLVPYH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="59199" PGL_stop="58172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59199" e_stop="59039"/>
            <exon e_start="58929" e_stop="58826"/>
            <exon e_start="58706" e_stop="58317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59199" e_stop="59039" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59038" i_stop="58930" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58929" e_stop="58826" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="58825" i_stop="58707" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58706" e_stop="58317" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59199" stop="59039"/>
              <exon start="58929" stop="58826"/>
              <exon start="58706" stop="58321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59186" stop="59039"/>
              <exon start="58929" stop="58826"/>
              <exon start="58706" stop="58317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59185" stop="59039"/>
              <exon start="58929" stop="58826"/>
              <exon start="58706" stop="58509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294366" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59185" stop="59039"/>
              <exon start="58929" stop="58826"/>
              <exon start="58706" stop="58509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGAAGAAAATGGTAAAGGCGGAAACGAAGAAGAAAGCAAAATGTTTCATGGATGTGGATAAGAAGAAGAATATGCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAA : AGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAG : GATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTCCGATTAATATTACTTGACTCACTATGTCTTTTGAACTTGATGTCTTT</gDNA_template>
            <first_frame> D  E  E  N  G  K  G  G  N  E  E  E  S  K  M  F  H  G  C  G  *  E  E  E  Y  A  K  I  R  R  R  R  L  I  I  G  S  I  C  K  R  Q  N  Q  D  Q  H  L  Q  P  C  H  Y  K :   E  A  K  G  V  L  *  E  R  *  I  C  E  *  I  *  E  D  S  *  A  A  T  R  R  A  F  W  F  C  K  T  T  R   : G  *  R  S  R  Y  *  E  K  *  E  E  *  C  *  K  P  K  R  N  I  *  E  K  T  R  G  G  *  Q  G  K  D  G  D  G  G  H  Y  S  S  K  E  R  R  N  A  E  S  *  I  S  K  E  R  T  K  G  E  N  V  Q  E  N  *  I  R  P  T  S  H  E  V  Q  N  R  T  Y  F  G  N  T  S  R  I  K  S  I  S  N  C  K  R  Q  K  S  G  C  K  S  Y  A  S  S  F  Y  I  K  E  K  T  I  I  L  S  D  *  Y  Y  L  T  H  Y  V  F  *  T  *  C  L  </first_frame>
            <second_frame>  M  K  K  M  V  K  A  E  T  K  K  K  A  K  C  F  M  D  V  D  K  K  K  N  M  Q  R  L  G  G  G  G  L  S  L  E  A  F  A  N  A  K  T  K  T  N  T  Y  N  P  A  I  I   : K  K  Q  R  E  F  Y  K  N  A  K  Y  V  N  K  Y  K  R  I  V  K  Q  Q  Q  G  E  P  S  G  S  A  R  Q  L  E  :  D  E  E  V  D  I  R  R  N  K  K  N  S  A  R  S  L  R  E  I  Y  E  R  K  R  E  E  D  D  K  A  R  M  E  T  E  A  T  I  L  A  R  K  E  E  M  Q  R  A  E  S  R  R  K  E  L  R  E  K  M  F  K  K  T  K  S  G  Q  P  V  M  K  Y  R  I  E  H  I  L  E  T  L  Q  G  S  K  V  *  V  I  A  K  D  K  S  L  D  V  R  V  M  L  Q  V  S  I  S  K  K  K  P  S  S  C  P  I  N  I  T  *  L  T  M  S  F  E  L  D  V  F </second_frame>
            <third_frame>   *  R  K  W  *  R  R  K  R  R  R  K  Q  N  V  S  W  M  W  I  R  R  R  I  C  K  D  *  E  E  E  A  Y  H  W  K  H  L  Q  T  P  K  P  R  P  T  L  T  T  L  P  L  *  :  R  S  K  G  S  F  I  R  T  L  N  M  *  I  N  I  R  G  *  L  S  S  N  K  E  S  L  L  V  L  Q  D  N  *  R :   M  K  K  *  I  L  G  E  I  R  R  I  V  L  E  A  *  E  K  Y  M  R  E  N  A  R  R  M  T  R  Q  G  W  R  R  R  P  L  F  *  Q  G  K  K  K  C  R  E  L  N  L  E  G  K  N  *  G  R  K  C  S  R  K  L  N  Q  A  N  Q  S  *  S  T  E  *  N  I  F  W  K  H  F  K  D  Q  K  Y  K  *  L  Q  K  T  K  V  W  M  *  E  L  C  F  K  F  L  Y  Q  R  K  N  H  H  L  V  R  L  I  L  L  D  S  L  C  L  L  N  L  M  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59198" stop="59039"/>
                    <exon start="58929" stop="58826"/>
                    <exon start="58706" stop="58443"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKKMVKAETKKKAKCFMDVDKKKNMQRLGGGGLSLEAFANAKTKTNTYNPAIIKKQREFYKNAKYVNKYKRIVKQQQGEPSGSARQLEDEEVDIRRNKKNSARSLREIYERKREEDDKARMETEATILARKEEMQRAESRRKELREKMFKKTKSGQPVMKYRIEHILETLQGSKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59124" e_stop="59039"/>
            <exon e_start="58929" e_stop="58172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.998" e_score="0.988"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="59124" e_stop="59039" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59038" i_stop="58930" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="58929" e_stop="58172" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59124" stop="59039"/>
              <exon start="58929" stop="58312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58876" stop="58172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577970" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAGATTAGGAGGAGGAGGCTTATCATTGGAAGCATTTGCAAACGCCAAAACCAAGACCAACACTTACAACCCTGCCATTATAA : AGAAGCAAAGGGAGTTTTATAAGAACGCTAAATATGTGAATAAATATAAGAGGATAGTTAAGCAGCAACAAGGAGAGCCTTCTGGTTCTGCAAGACAACTAGAGGTTAGTCATTTATCCTCTTATTGTAATTGTGGAATCAAGTAACAATCCAGAACGTGTCAATTGCAACTAGAAAAGTGAGGTAAGGTACGTGTTCATTCTAATTCCAATTGGTATATCAGGATGAAGAAGTAGATATTAGGAGAAATAAGAAGAATAGTGCTAGAAGCCTAAGAGAAATATATGAGAGAAAACGCGAGGAGGATGACAAGGCAAGGATGGAGACGGAGGCCACTATTCTAGCAAGGAAAGAAGAAATGCAGAGAGCTGAATCTCGAAGGAAAGAACTAAGGGAGAAAATGTTCAAGAAAACTAAATCAGGCCAACCAGTCATGAAGTACAGAATAGAACATATTTTGGAAACACTTCAAGGATCAAAAGTATAAGTAATTGCAAAAGACAAAAGTCTGGATGTAAGAGTTATGCTTCAAGTTTCTATATCAAAGAAAAAACCATCATCTTGTCCGATTAATATTACTTGACTCACTATGTCTTTTGAACTTGATGTCTTTTATTCTTGCACATCTTTACTTATTCTATCATTTGATTTCTTAGATAGGAATAGGAGTACCAGTAGTATTTAAAGTCTTGAATTCTCATTAATTTTGTAAAGGTGAAATCAGAATTTAATTTTGATGAATGAATCCTTCCATAGAA</gDNA_template>
            <first_frame> A  K  I  R  R  R  R  L  I  I  G  S  I  C  K  R  Q  N  Q  D  Q  H  L  Q  P  C  H  Y  K :   E  A  K  G  V  L  *  E  R  *  I  C  E  *  I  *  E  D  S  *  A  A  T  R  R  A  F  W  F  C  K  T  T  R  G  *  S  F  I  L  L  L  *  L  W  N  Q  V  T  I  Q  N  V  S  I  A  T  R  K  V  R  *  G  T  C  S  F  *  F  Q  L  V  Y  Q  D  E  E  V  D  I  R  R  N  K  K  N  S  A  R  S  L  R  E  I  Y  E  R  K  R  E  E  D  D  K  A  R  M  E  T  E  A  T  I  L  A  R  K  E  E  M  Q  R  A  E  S  R  R  K  E  L  R  E  K  M  F  K  K  T  K  S  G  Q  P  V  M  K  Y  R  I  E  H  I  L  E  T  L  Q  G  S  K  V  *  V  I  A  K  D  K  S  L  D  V  R  V  M  L  Q  V  S  I  S  K  K  K  P  S  S  C  P  I  N  I  T  *  L  T  M  S  F  E  L  D  V  F  Y  S  C  T  S  L  L  I  L  S  F  D  F  L  D  R  N  R  S  T  S  S  I  *  S  L  E  F  S  L  I  L  *  R  *  N  Q  N  L  I  L  M  N  E  S  F  H  R  </first_frame>
            <second_frame>  Q  R  L  G  G  G  G  L  S  L  E  A  F  A  N  A  K  T  K  T  N  T  Y  N  P  A  I  I   : K  K  Q  R  E  F  Y  K  N  A  K  Y  V  N  K  Y  K  R  I  V  K  Q  Q  Q  G  E  P  S  G  S  A  R  Q  L  E  V  S  H  L  S  S  Y  C  N  C  G  I  K  *  Q  S  R  T  C  Q  L  Q  L  E  K  *  G  K  V  R  V  H  S  N  S  N  W  Y  I  R  M  K  K  *  I  L  G  E  I  R  R  I  V  L  E  A  *  E  K  Y  M  R  E  N  A  R  R  M  T  R  Q  G  W  R  R  R  P  L  F  *  Q  G  K  K  K  C  R  E  L  N  L  E  G  K  N  *  G  R  K  C  S  R  K  L  N  Q  A  N  Q  S  *  S  T  E  *  N  I  F  W  K  H  F  K  D  Q  K  Y  K  *  L  Q  K  T  K  V  W  M  *  E  L  C  F  K  F  L  Y  Q  R  K  N  H  H  L  V  R  L  I  L  L  D  S  L  C  L  L  N  L  M  S  F  I  L  A  H  L  Y  L  F  Y  H  L  I  S  *  I  G  I  G  V  P  V  V  F  K  V  L  N  S  H  *  F  C  K  G  E  I  R  I  *  F  *  *  M  N  P  S  I  E </second_frame>
            <third_frame>   K  D  *  E  E  E  A  Y  H  W  K  H  L  Q  T  P  K  P  R  P  T  L  T  T  L  P  L  *  :  R  S  K  G  S  F  I  R  T  L  N  M  *  I  N  I  R  G  *  L  S  S  N  K  E  S  L  L  V  L  Q  D  N  *  R  L  V  I  Y  P  L  I  V  I  V  E  S  S  N  N  P  E  R  V  N  C  N  *  K  S  E  V  R  Y  V  F  I  L  I  P  I  G  I  S  G  *  R  S  R  Y  *  E  K  *  E  E  *  C  *  K  P  K  R  N  I  *  E  K  T  R  G  G  *  Q  G  K  D  G  D  G  G  H  Y  S  S  K  E  R  R  N  A  E  S  *  I  S  K  E  R  T  K  G  E  N  V  Q  E  N  *  I  R  P  T  S  H  E  V  Q  N  R  T  Y  F  G  N  T  S  R  I  K  S  I  S  N  C  K  R  Q  K  S  G  C  K  S  Y  A  S  S  F  Y  I  K  E  K  T  I  I  L  S  D  *  Y  Y  L  T  H  Y  V  F  *  T  *  C  L  L  F  L  H  I  F  T  Y  S  I  I  *  F  L  R  *  E  *  E  Y  Q  *  Y  L  K  S  *  I  L  I  N  F  V  K  V  K  S  E  F  N  F  D  E  *  I  L  P  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58724" stop="58443"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLVYQDEEVDIRRNKKNSARSLREIYERKREEDDKARMETEATILARKEEMQRAESRRKELREKMFKKTKSGQPVMKYRIEHILETLQGSKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59123" stop="59039"/>
                    <exon start="58929" stop="58784"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRLGGGGLSLEAFANAKTKTNTYNPAIIKKQREFYKNAKYVNKYKRIVKQQQGEPSGSARQLEVSHLSSYCNCGIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="69761" PGL_stop="61843"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69761" e_stop="69627"/>
            <exon e_start="69543" e_stop="69456"/>
            <exon e_start="68966" e_stop="68910"/>
            <exon e_start="68802" e_stop="68770"/>
            <exon e_start="68660" e_stop="68583"/>
            <exon e_start="68468" e_stop="68425"/>
            <exon e_start="68303" e_stop="68263"/>
            <exon e_start="66382" e_stop="66300"/>
            <exon e_start="66204" e_stop="66113"/>
            <exon e_start="66008" e_stop="65939"/>
            <exon e_start="62761" e_stop="62723"/>
            <exon e_start="62149" e_stop="61843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.443" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.352" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69761" e_stop="69627" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69626" i_stop="69544" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69543" e_stop="69456" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69455" i_stop="68967" i_length="489"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68966" e_stop="68910" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="68909" i_stop="68803" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68802" e_stop="68770" e_length="33"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68769" i_stop="68661" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68660" e_stop="68583" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.443" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68582" i_stop="68469" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68468" e_stop="68425" e_length="44"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68424" i_stop="68304" i_length="121"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68303" e_stop="68263" e_length="41"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68262" i_stop="66383" i_length="1880"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66382" e_stop="66300" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.930" acc_prob="0.352">
            <gDNA_intron_boundary i_start="66299" i_stop="66205" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66204" e_stop="66113" e_length="92"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.961">
            <gDNA_intron_boundary i_start="66112" i_stop="66009" i_length="104"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66008" e_stop="65939" e_length="70"/>
          </exon>
          <intron i_serial="10" don_prob="0.907" acc_prob="0.850">
            <gDNA_intron_boundary i_start="65938" i_stop="62762" i_length="3177"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="62761" e_stop="62723" e_length="39"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="62722" i_stop="62150" i_length="573"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62149" e_stop="61843" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69761" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66113"/>
              <exon start="66008" stop="65954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69757" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69755" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69742" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69736" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69714" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69712" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66113"/>
              <exon start="66008" stop="65954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69712" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66113"/>
              <exon start="66008" stop="65977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69712" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66113"/>
              <exon start="66008" stop="65988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69712" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69712" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69712" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69681" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69671" stop="69627"/>
              <exon start="69543" stop="69456"/>
              <exon start="68966" stop="68910"/>
              <exon start="68802" stop="68770"/>
              <exon start="68660" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66113"/>
              <exon start="66008" stop="65968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68585" stop="68583"/>
              <exon start="68468" stop="68425"/>
              <exon start="68303" stop="68263"/>
              <exon start="66382" stop="66300"/>
              <exon start="66204" stop="66113"/>
              <exon start="66008" stop="65939"/>
              <exon start="62761" stop="62723"/>
              <exon start="62149" stop="61843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66195" stop="66113"/>
              <exon start="66008" stop="65939"/>
              <exon start="62761" stop="62723"/>
              <exon start="62149" stop="61859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235186" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66193" stop="66113"/>
              <exon start="66008" stop="65939"/>
              <exon start="62761" stop="62723"/>
              <exon start="62149" stop="61905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234514" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66173" stop="66113"/>
              <exon start="66008" stop="65939"/>
              <exon start="62761" stop="62723"/>
              <exon start="62149" stop="61876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAACCAAATTTCACCACATACCTCTACTCTCGAACCTTTTACATGGACGAAGACGGTGAGAATTTTGTCGTTGATCAACCGCCGCCGCCCGAAGAGGAGCTCGATAGACAAGATGTCGGAAAGTTGCTTTATGG : ATGTGATCATTATCGGCGACGCTGTAAACTCCGAGCCCCTTGTTGCAATGAAATATTCACTTGCCGTCACTGCCACAACGAGGCCAAG : AATGCTTTGACCAATCCCAAGGAACGGCACGAACTTGTGCGCCACAATGTTAAGCAA : GTTGTTTGTGCTGTATGCGACACTGAACAACAG : GTTGCTGAGATCTGTTCAGAGTGTGGCGTCAAATTTGGGGAGTACTATTGTGAAATTTGTAGATTTTACGATGACAAT : AGAACAAAGGGGCAGTTTCACTGTGATGACTGTGGAATTTGCAG : GGTCGGTGGTCGAGAAAACTTCTTCCACTGCAAGAAGTGTG : GATCCTGCTATTCGGTGGAGCTGCGTGATAATCACTTGTGTGTGGAGAACTCAATGAAGAACCACTGTCCCATCTGTTATGAG : TTTCTTTTCGACTCAGTGAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCCACACAGAGATGATCCATCAGAACCA : GTATCGCTGCCCTATATGCTCTAAGTCTGTTCTCAACATGTCCGGAACTTGGCAAAGATTAGATATGGAG : ATTGAAGCTACAGCCATGCCTGAAGAATATCGTTATGAG : GTTCCAATTCTGTGCAATGACTGTAATAGTACTGGTAAAGCATTTTTTCACATACTTGGCCACAAATGCAAGCATTGTAATTCATACAACACCCGCATGATTGGTACTGGTGAAGATCCCCGATGACATGGGTCAGCTTGATTCAAGCCTTTTTTATTTGTTTCTTCTAGCGAACTGTACAAAGGAATCTGGGATAGTCCTTGGATAAAACCTCTCTCTCATTTTTCTATTGCATATTGAAAACTAATTGGCTCCACTGAGCTTAACATTGAAGGTTTCTCTTTACTACTTATTTCCTTTCCTCCAA</gDNA_template>
            <first_frame> A  T  K  F  H  H  I  P  L  L  S  N  L  L  H  G  R  R  R  *  E  F  C  R  *  S  T  A  A  A  R  R  G  A  R  *  T  R  C  R  K  V  A  L  W  :  M  *  S  L  S  A  T  L  *  T  P  S  P  L  L  Q  *  N  I  H  L  P  S  L  P  Q  R  G  Q   : E  C  F  D  Q  S  Q  G  T  A  R  T  C  A  P  Q  C  *  A   : S  C  L  C  C  M  R  H  *  T  T   : G  C  *  D  L  F  R  V  W  R  Q  I  W  G  V  L  L  *  N  L  *  I  L  R  *  Q   : *  N  K  G  A  V  S  L  *  *  L  W  N  L  Q  :  G  R  W  S  R  K  L  L  P  L  Q  E  V  W :   I  L  L  F  G  G  A  A  *  *  S  L  V  C  G  E  L  N  E  E  P  L  S  H  L  L  *   : V  S  F  R  L  S  E  R  H  H  N  Y  E  V  W  T  Y  N  A  Y  G  M  P  H  R  D  D  P  S  E  P  :  V  S  L  P  Y  M  L  *  V  C  S  Q  H  V  R  N  L  A  K  I  R  Y  G   : D  *  S  Y  S  H  A  *  R  I  S  L  *   : G  S  N  S  V  Q  *  L  *  *  Y  W  *  S  I  F  S  H  T  W  P  Q  M  Q  A  L  *  F  I  Q  H  P  H  D  W  Y  W  *  R  S  P  M  T  W  V  S  L  I  Q  A  F  F  I  C  F  F  *  R  T  V  Q  R  N  L  G  *  S  L  D  K  T  S  L  S  F  F  Y  C  I  L  K  T  N  W  L  H  *  A  *  H  *  R  F  L  F  T  T  Y  F  L  S  S   </first_frame>
            <second_frame>  Q  P  N  F  T  T  Y  L  Y  S  R  T  F  Y  M  D  E  D  G  E  N  F  V  V  D  Q  P  P  P  P  E  E  E  L  D  R  Q  D  V  G  K  L  L  Y  G :   C  D  H  Y  R  R  R  C  K  L  R  A  P  C  C  N  E  I  F  T  C  R  H  C  H  N  E  A  K  :  N  A  L  T  N  P  K  E  R  H  E  L  V  R  H  N  V  K  Q  :  V  V  C  A  V  C  D  T  E  Q  Q  :  V  A  E  I  C  S  E  C  G  V  K  F  G  E  Y  Y  C  E  I  C  R  F  Y  D  D  N  :  R  T  K  G  Q  F  H  C  D  D  C  G  I  C  R :   V  G  G  R  E  N  F  F  H  C  K  K  C   : G  S  C  Y  S  V  E  L  R  D  N  H  L  C  V  E  N  S  M  K  N  H  C  P  I  C  Y  E  :  F  L  F  D  S  V  K  G  T  T  I  M  K  C  G  H  T  M  H  M  E  C  H  T  E  M  I  H  Q  N  Q :   Y  R  C  P  I  C  S  K  S  V  L  N  M  S  G  T  W  Q  R  L  D  M  E  :  I  E  A  T  A  M  P  E  E  Y  R  Y  E  :  V  P  I  L  C  N  D  C  N  S  T  G  K  A  F  F  H  I  L  G  H  K  C  K  H  C  N  S  Y  N  T  R  M  I  G  T  G  E  D  P  R  *  H  G  S  A  *  F  K  P  F  L  F  V  S  S  S  E  L  Y  K  G  I  W  D  S  P  W  I  K  P  L  S  H  F  S  I  A  Y  *  K  L  I  G  S  T  E  L  N  I  E  G  F  S  L  L  L  I  S  F  P  P  </second_frame>
            <third_frame>   N  Q  I  S  P  H  T  S  T  L  E  P  F  T  W  T  K  T  V  R  I  L  S  L  I  N  R  R  R  P  K  R  S  S  I  D  K  M  S  E  S  C  F  M   : D  V  I  I  I  G  D  A  V  N  S  E  P  L  V  A  M  K  Y  S  L  A  V  T  A  T  T  R  P  R :   M  L  *  P  I  P  R  N  G  T  N  L  C  A  T  M  L  S  K :   L  F  V  L  Y  A  T  L  N  N  R :   L  L  R  S  V  Q  S  V  A  S  N  L  G  S  T  I  V  K  F  V  D  F  T  M  T  I :   E  Q  R  G  S  F  T  V  M  T  V  E  F  A   : G  S  V  V  E  K  T  S  S  T  A  R  S  V  :  D  P  A  I  R  W  S  C  V  I  I  T  C  V  W  R  T  Q  *  R  T  T  V  P  S  V  M  S :   F  F  S  T  Q  *  K  A  P  Q  L  *  S  V  D  I  Q  C  I  W  N  A  T  Q  R  *  S  I  R  T   : S  I  A  A  L  Y  A  L  S  L  F  S  T  C  P  E  L  G  K  D  *  I  W  R :   L  K  L  Q  P  C  L  K  N  I  V  M  R :   F  Q  F  C  A  M  T  V  I  V  L  V  K  H  F  F  T  Y  L  A  T  N  A  S  I  V  I  H  T  T  P  A  *  L  V  L  V  K  I  P  D  D  M  G  Q  L  D  S  S  L  F  Y  L  F  L  L  A  N  C  T  K  E  S  G  I  V  L  G  *  N  L  S  L  I  F  L  L  H  I  E  N  *  L  A  P  L  S  L  T  L  K  V  S  L  Y  Y  L  F  P  F  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69760" stop="69627"/>
                    <exon start="69543" stop="69456"/>
                    <exon start="68966" stop="68910"/>
                    <exon start="68802" stop="68770"/>
                    <exon start="68660" stop="68583"/>
                    <exon start="68468" stop="68425"/>
                    <exon start="68303" stop="68263"/>
                    <exon start="66382" stop="66300"/>
                    <exon start="66204" stop="66113"/>
                    <exon start="66008" stop="65939"/>
                    <exon start="62761" stop="62723"/>
                    <exon start="62149" stop="62024"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPNFTTYLYSRTFYMDEDGENFVVDQPPPPEEELDRQDVGKLLYGCDHYRRRCKLRAPCCNEIFTCRHCHNEAKNALTNPKERHELVRHNVKQVVCAVCDTEQQVAEICSECGVKFGEYYCEICRFYDDNRTKGQFHCDDCGICRVGGRENFFHCKKCGSCYSVELRDNHLCVENSMKNHCPICYEFLFDSVKGTTIMKCGHTMHMECHTEMIHQNQYRCPICSKSVLNMSGTWQRLDMEIEATAMPEEYRYEVPILCNDCNSTGKAFFHILGHKCKHCNSYNTRMIGTGEDPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="78834" PGL_stop="72285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78793" e_stop="78723"/>
            <exon e_start="78364" e_stop="78219"/>
            <exon e_start="78107" e_stop="78008"/>
            <exon e_start="77717" e_stop="77532"/>
            <exon e_start="77407" e_stop="77360"/>
            <exon e_start="77272" e_stop="77069"/>
            <exon e_start="76971" e_stop="76894"/>
            <exon e_start="76169" e_stop="76080"/>
            <exon e_start="75971" e_stop="75891"/>
            <exon e_start="75794" e_stop="75735"/>
            <exon e_start="75375" e_stop="75346"/>
            <exon e_start="75253" e_stop="75167"/>
            <exon e_start="75071" e_stop="74922"/>
            <exon e_start="74835" e_stop="74780"/>
            <exon e_start="74684" e_stop="74564"/>
            <exon e_start="74478" e_stop="74317"/>
            <exon e_start="74209" e_stop="74066"/>
            <exon e_start="73981" e_stop="73763"/>
            <exon e_start="73662" e_stop="73495"/>
            <exon e_start="72686" e_stop="72285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.880" e_score="0.981"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.285" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.058" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.791" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="78793" e_stop="78723" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.880">
            <gDNA_intron_boundary i_start="78722" i_stop="78365" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78364" e_stop="78219" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78107" e_stop="78008" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.285" acc_prob="0.996">
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          <exon e_serial="4" e_score="1.000">
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          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
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          </intron>
          <exon e_serial="5" e_score="1.000">
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          <intron i_serial="5" don_prob="0.994" acc_prob="0.931">
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          </intron>
          <exon e_serial="6" e_score="1.000">
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          <intron i_serial="6" don_prob="0.994" acc_prob="0.992">
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          </intron>
          <exon e_serial="7" e_score="1.000">
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          <exon e_serial="8" e_score="1.000">
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          </intron>
          <exon e_serial="10" e_score="1.000">
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          </exon>
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          <exon e_serial="11" e_score="1.000">
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          </intron>
          <exon e_serial="12" e_score="1.000">
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          <exon e_serial="16" e_score="1.000">
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78793" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
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              <exon start="77272" stop="77107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78774" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78755" stop="78723"/>
              <exon start="78364" stop="78219"/>
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              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78748" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
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              <exon start="76169" stop="76094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78364" stop="78219"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338205" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480738" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="75971" stop="75950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483226" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E441846" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481106" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="75071" stop="74938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76156" stop="76080"/>
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              <exon start="74478" stop="74432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="74684" stop="74620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75757" stop="75735"/>
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              <exon start="73981" stop="73966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="75071" stop="74922"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75005" stop="74922"/>
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              <exon start="73981" stop="73794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74835" stop="74780"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74821" stop="74780"/>
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              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74635" stop="74564"/>
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              <exon start="73981" stop="73879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74618" stop="74564"/>
              <exon start="74478" stop="74317"/>
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              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554480" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="73662" stop="73581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74464" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74348" stop="74317"/>
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              <exon start="73981" stop="73763"/>
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              <exon start="72686" stop="72621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73947" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73864" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73817" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72684" stop="72358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72684" stop="72358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT : TTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC : AACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACA : GTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG : GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTG : ATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG : GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG : AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG : GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG : CATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG : GCTGAAAGTTCCAGTGGGTCACAGGAGCAG : GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG : GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG : GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG : GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG : GTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG : GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG : GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG : ATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG : CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCACATCTTTGTGTAAATCTTATGCTTTGGTGTTTCTATATTGTCCTTGCAACCCCTGGATTACTAATGTGGGCAAT</gDNA_template>
            <first_frame> F  F  S  S  A  L  A  R  S  L  L  F  R  D  L  L  V  F  S  A  T  K  L  L :   L  C  L  *  R  L  A  R  *  R  Q  S  S  W  R  K  D  G  T  S  C  R  R  E  S  Q  N  *  R  K  S  *  K  A  I  Q  I  H  S  A  P  K  S  T  *  C  S  T   : Q  L  S  I  T  C  V  H  R  S  P  L  M  I  T  L  S  S  Y  M  R  N  T  R  K  P  L  K  S  T  S  I  L  Q :   F  Y  L  L  *  E  R  S  T  T  S  S  C  *  G  S  S  *  K  D  G  Q  I  I  N  L  W  S  G  G  F  H  G  S  S  I  I  L  I  G  I  L  L  L  E  G  H  S  L  H  L  M  K  L  V  *  R  A  S  V  I  W :   F  I  K  S  *  K  V  K  L  E  M  Q  L  *  R  * :   L  I  K  N  V  R  V  N  R  L  I  E  P  Y  *  R  T  C  *  V  Y  L  L  K  L  G  W  G  K  W  S  S  M  K  M  T  L  K  M  Q  C  L  K  I  H  Q  L  I  I  L  E  K  H  Q  T  G  L  W  K  I  L  V  Q  I  I  C  *  R :   Q  K  S  A  *  K  K  R  R  I  E  F  L  I  I  C  T  Q  A  A  R  Q  N  F  W  R :   K  C  K  M  N  Y  W  L  Y  I  P  I  N  C  L  R  R  S  I  L  D  A  E  L  C  L  E  M  I  R :   *  R  I  Y  L  E  C  T  G  Y  S  T  G  S  L  K  V  W  N  Q  L  Q  I  C  L  S  S :   M  S  L  L  K  A  W  Y  W  C  N  R  P  K  T  Q  Q  V  T  R :   L  K  V  P  V  G  H  R  S  R :   S  L  L  G  R  L  L  S  C  M  T  N  I  W  H  M  *  P  T  V  L  Q  I  T  L  S  F  T  R :   L  *  K  R  H  L  R  S  S  V  T  K  L  L  L  A  V  L  V  Q  N  S  L  P  L  I  V  I  I  S  L  R  R  A  G  V  R  N  S  V  M  M  L  L  R  R  H  *  I  R :   W  *  S  F  L  R  I  S  V  T  R  T  F  L  L  S  S  T   : G  R  S  F  L  G  D  C  F  L  I  K  V  P  M  M  T  M  K  G  L  S  *  Q  S  *  S  S  S  V  V  D  S  L  R  Q  R  W  R  E  W :   *  R  T  *  L  W  R  R  K  I  R  V  T  F  R  N  I  S  V  T  T  R  Q  L  I  P  E  L  I  *  L  S  Q  F  L  Q  L  A  F  G  L  V  I  N  L  L  I  *  V  S  L  W  K  W :   *  S  V  *  K  S  S  R  N  F  I  R  R  K  R  N  T  G  N  *  P  G  F  I  H  W  V  H  A  I  S  M  A  S  L  N  Q  K  L  L  N  L  L  W  E  L  T  R :   L  L  L  Y  Y  C  L  M  L  Q  I  D  *  V  T  Q  I  S  K  V  S  *  I  W  L  M  M  T  *  S  D  C  F  N  P  C  H  V  L  S  I  K  F  *  P  K  S  L  A  I  E  L  F  R  Q  R  I  I  L  N  S  T  P  S  S  L  T  E  *  G  G  L  G :   S  L  C  L  R  L  M  K  G  K  K  W  L  R  T  L  T  R  T  D  V  M  Q  L  M  L  V  L  C  A  L  *  R  A  G  R  C  F  L  I  S  S  S  C  W  S  V  L  S  N  *  A  A  C  L  S :   L  I  S  K  Q  S  K  R  G  L  K  I  L  S  L  V  T  T  W  K  E  T  K  R  T  Q  T  C  S  S  T  W  P  E  A  T  S  *  Y  *  L  V  L  A  L  D  G  S  E  *  S  W  I  *  L  L  A  A  I  F  F  D  L  C  L  S  R  Q  L  V  Q  L  L  V  Y  H  H  F  F  S  E  G  G  T  *  I  S  L  S  V  N  I  S  A  V  H  F  F  P  L  I  F  L  I  V  S  *  A  P  H  L  C  V  N  L  M  L  W  C  F  Y  I  V  L  A  T  P  G  L  L  M  W  A   </first_frame>
            <second_frame>  S  S  R  L  P  *  L  A  R  S  S  S  A  I  S  S  C  F  L  Q  P  N  C   : F  C  V  Y  D  D  *  P  D  E  D  N  R  A  G  G  R  M  E  L  H  A  E  G  N  H  K  I  K  E  N  L  R  R  P  S  R  F  I  Q  L  R  R  V  H  D  A  L  H  :  N  Y  L  *  H  V  Y  T  E  A  P  S  *  L  L  S  A  V  I  *  E  I  Q  G  S  L  *  R  V  H  Q  F  Y   : S  S  I  F  F  E  R  E  A  R  R  V  H  A  E  G  A  R  E  K  M  G  K  S  *  T  Y  G  Q  V  A  F  T  V  L  P  L  S  *  S  V  F  Y  C  S  K  V  T  P  C  T  *  *  S  W  S  D  V  L  P  *  F   : G  L  S  R  V  E  K  *  S  *  R  C  S  Y  S  A   : D  *  S  R  T  *  G  *  T  D  *  *  S  L  I  K  E  R  A  R  Y  I  C  *  N  W  D  G  G  N  G  V  L  *  K  *  L  *  R  C  N  A  *  R  Y  I  S  L  L  F  S  K  S  I  K  L  D  C  G  R  F  L  S  R  L  Y  V  E   : G  R  R  V  L  E  K  R  E  G  *  S  F  S  L  F  A  L  K  Q  R  D  K  T  S  G   : E  S  A  K  *  I  I  G  C  I  Y  Q  S  I  A  *  E  G  A  F  W  M  P  S  F  A  *  R  *  *   : G  R  G  F  I  S  N  V  Q  A  I  P  Q  D  P  *  R  F  G  T  S  C  K  Y  V  *  A   : A  C  H  C  *  R  H  G  I  G  A  T  G  R  R  L  S  K  *  Q   : G  *  K  F  Q  W  V  T  G  A   : G  L  C  *  E  G  Y  *  A  A  *  Q  I  Y  G  I  C  D  R  Q  F  C  K  *  L  S  L  S  Q   : G  F  E  R  G  I  *  G  L  L  *  Q  N  C  C  W  L  F  *  C  R  T  P  C  L  L  L  *  *  Y  P  *  E  G  R  E  *  E  T  Q  *  *  C  Y  *  G  D  I  R  *   : G  G  E  A  S  C  V  Y  Q  *  Q  G  P  F  C  *  V  L  Q  :  E  E  A  F  S  A  T  A  F  *  *  K  C  Q  *  *  P  *  K  A  Y  L  N  K  V  K  A  A  V  W  W  T  V  Y  V  K  D  G  G  N   : G  D  G  L  D  S  G  E  G  K  S  E  S  L  S  G  I  S  Q  *  Q  L  G  S  *  S  R  N  *  F  D  C  H  S  S  Y  N  W  L  L  A  *  L  *  I  F  *  S  E  S  P  C  G  N   : G  E  V  C  R  S  L  Q  G  I  L  S  D  E  N  E  T  Q  E  I  D  L  D  L  F  T  G  Y  M  Q  Y  Q  W  Q  V  *  I  K  N  Y  *  T  Y  C  G  N  L  P   : G  C  C  S  I  T  V  *  C  F  R  *  I  E  L  L  R  Y  Q  K  S  V  K  F  G  *  *  *  L  D  Q  I  A  S  I  P  V  M  C  *  V  *  N  S  D  Q  R  A  *  Q  *  N  C  F  V  N  G  S  F  *  I  Q  L  Q  V  H  *  Q  N  E  E  D  *   : D  P  F  A  S  G  *  *  K  E  K  S  G  *  G  R  *  Q  G  Q  T  L  C  N  *  C  L  Y  C  A  H  Y  E  E  P  E  G  A  S  S  S  A  A  R  V  G  V  C  *  A  I  E  P  H  V  *   : A  *  F  Q  S  N  Q  K  E  D  *  R  S  Y  H  S  *  L  L  G  K  R  Q  R  E  P  K  L  V  Q  V  L  G  L  R  Q  Q  A  D  T  D  L  S  W  H  W  M  E  V  S  R  A  G  F  D  C  *  Q  R  F  F  L  T  F  A  *  V  G  N  L  C  S  C  *  Y  I  T  T  F  F  Q  K  V  A  L  E  F  P  F  Q  *  I  F  Q  P  C  T  F  F  P  *  Y  S  *  L  S  L  K  R  H  I  F  V  *  I  L  C  F  G  V  S  I  L  S  L  Q  P  L  D  Y  *  C  G  Q  </second_frame>
            <third_frame>   L  L  V  C  P  S  S  L  A  P  L  P  R  S  P  R  V  F  C  N  Q  T  A  :  F  V  F  M  T  T  S  Q  M  K  T  I  E  L  E  E  G  W  N  F  M  Q  K  G  I  T  K  L  K  K  I  L  E  G  H  P  D  S  F  S  S  E  E  Y  M  M  L  Y  T :   T  I  Y  N  M  C  T  Q  K  P  P  H  D  Y  S  Q  Q  L  Y  E  K  Y  K  E  A  F  E  E  Y  I  N  S  T  :  V  L  S  S  L  R  E  K  H  D  E  F  M  L  R  E  L  V  K  R  W  A  N  H  K  L  M  V  R  W  L  S  R  F  F  H  Y  L  D  R  Y  F  I  A  R  R  S  L  P  A  L  N  E  V  G  L  T  C  F  R  D  L  :  V  Y  Q  E  L  K  S  K  A  R  D  A  V  I  A  L  :  I  D  Q  E  R  E  G  E  Q  I  D  R  A  L  L  K  N  V  L  G  I  F  V  E  I  G  M  G  E  M  E  F  Y  E  N  D  F  E  D  A  M  L  K  D  T  S  A  Y  Y  S  R  K  A  S  N  W  I  V  E  D  S  C  P  D  Y  M  L  K  :  A  E  E  C  L  K  K  E  K  D  R  V  S  H  Y  L  H  S  S  S  E  T  K  L  L  E  :  K  V  Q  N  E  L  L  V  V  Y  T  N  Q  L  L  E  K  E  H  S  G  C  R  A  L  L  R  D  D  K  :  V  E  D  L  S  R  M  Y  R  L  F  H  R  I  P  K  G  L  E  P  V  A  N  M  F  K  Q  :  H  V  T  A  E  G  M  V  L  V  Q  Q  A  E  D  S  A  S  N  K  :  A  E  S  S  S  G  S  Q  E  Q  :  V  F  V  R  K  V  I  E  L  H  D  K  Y  M  A  Y  V  T  D  S  F  A  N  N  S  L  F  H  K  :  A  L  K  E  A  F  E  V  F  C  N  K  I  V  A  G  C  S  S  A  E  L  L  A  S  Y  C  D  N  I  L  K  K  G  G  S  E  K  L  S  D  D  A  I  E  E  T  L  D  K  :  V  V  K  L  L  A  Y  I  S  D  K  D  L  F  A  E  F  Y  R :   K  K  L  S  R  R  L  L  F  D  K  S  A  N  D  D  H  E  R  L  I  L  T  K  L  K  Q  Q  C  G  G  Q  F  T  S  K  M  E  G  M  :  V  T  D  L  T  L  A  K  E  N  Q  S  H  F  Q  E  Y  L  S  N  N  S  A  A  N  P  G  I  D  L  T  V  T  V  L  T  T  G  F  W  P  S  Y  K  S  S  D  L  S  L  P  V  E  M  :  V  K  C  V  E  V  F  K  E  F  Y  Q  T  K  T  K  H  R  K  L  T  W  I  Y  S  L  G  T  C  N  I  N  G  K  F  E  S  K  T  I  E  L  I  V  G  T  Y  Q  :  A  A  A  L  L  L  F  N  A  S  D  R  L  S  Y  S  D  I  K  S  Q  L  N  L  A  D  D  D  L  I  R  L  L  Q  S  L  S  C  A  K  Y  K  I  L  T  K  E  P  S  N  R  T  V  S  S  T  D  H  F  E  F  N  S  K  F  T  D  R  M  R  R  I  R  :  I  P  L  P  P  V  D  E  R  K  K  V  V  E  D  V  D  K  D  R  R  Y  A  I  D  A  C  I  V  R  I  M  K  S  R  K  V  L  P  H  Q  Q  L  V  L  E  C  V  E  Q  L  S  R  M  F  K  :  P  D  F  K  A  I  K  K  R  I  E  D  L  I  T  R  D  Y  L  E  R  D  K  E  N  P  N  L  F  K  Y  L  A  *  G  N  K  L  I  L  T  C  L  G  T  G  W  K  *  V  E  L  D  L  I  V  S  S  D  F  F  *  P  L  P  E  *  A  T  C  A  V  V  S  I  S  P  L  F  F  R  R  W  H  L  N  F  P  F  S  K  Y  F  S  R  A  L  F  S  L  D  I  P  D  C  L  L  S  A  T  S  L  C  K  S  Y  A  L  V  F  L  Y  C  P  C  N  P  W  I  T  N  V  G  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78791" stop="78723"/>
                    <exon start="78364" stop="78219"/>
                    <exon start="78107" stop="78008"/>
                    <exon start="77717" stop="77532"/>
                    <exon start="77407" stop="77360"/>
                    <exon start="77272" stop="77069"/>
                    <exon start="76971" stop="76894"/>
                    <exon start="76169" stop="76080"/>
                    <exon start="75971" stop="75891"/>
                    <exon start="75794" stop="75735"/>
                    <exon start="75375" stop="75346"/>
                    <exon start="75253" stop="75167"/>
                    <exon start="75071" stop="74922"/>
                    <exon start="74835" stop="74780"/>
                    <exon start="74684" stop="74564"/>
                    <exon start="74478" stop="74317"/>
                    <exon start="74209" stop="74066"/>
                    <exon start="73981" stop="73763"/>
                    <exon start="73662" stop="73495"/>
                    <exon start="72686" stop="72585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2298</number_coding_nucleotides>
                  <number_encoded_amino_acids>766</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVCPSSLAPLPRSPRVFCNQTAFVFMTTSQMKTIELEEGWNFMQKGITKLKKILEGHPDSFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYEKYKEAFEEYINSTVLSSLREKHDEFMLRELVKRWANHKLMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLVYQELKSKARDAVIALIDQEREGEQIDRALLKNVLGIFVEIGMGEMEFYENDFEDAMLKDTSAYYSRKASNWIVEDSCPDYMLKAEECLKKEKDRVSHYLHSSSETKLLEKVQNELLVVYTNQLLEKEHSGCRALLRDDKVEDLSRMYRLFHRIPKGLEPVANMFKQHVTAEGMVLVQQAEDSASNKAESSSGSQEQVFVRKVIELHDKYMAYVTDSFANNSLFHKALKEAFEVFCNKIVAGCSSAELLASYCDNILKKGGSEKLSDDAIEETLDKVVKLLAYISDKDLFAEFYRKKLSRRLLFDKSANDDHERLILTKLKQQCGGQFTSKMEGMVTDLTLAKENQSHFQEYLSNNSAANPGIDLTVTVLTTGFWPSYKSSDLSLPVEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNINGKFESKTIELIVGTYQAAALLLFNASDRLSYSDIKSQLNLADDDLIRLLQSLSCAKYKILTKEPSNRTVSSTDHFEFNSKFTDRMRRIRIPLPPVDERKKVVEDVDKDRRYAIDACIVRIMKSRKVLPHQQLVLECVEQLSRMFKPDFKAIKKRIEDLITRDYLERDKENPNLFKYLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72485" stop="72285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATCAVVSISPLFFRRWHLNFPFSKYFSRALFSLDIPDCLLSATSLCKSYALVFLYCPCNPWITNVGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78798" e_stop="78723"/>
            <exon e_start="78349" e_stop="78219"/>
            <exon e_start="78107" e_stop="78008"/>
            <exon e_start="77717" e_stop="77532"/>
            <exon e_start="77407" e_stop="77360"/>
            <exon e_start="77272" e_stop="77069"/>
            <exon e_start="76971" e_stop="76894"/>
            <exon e_start="76169" e_stop="76080"/>
            <exon e_start="75971" e_stop="75891"/>
            <exon e_start="75794" e_stop="75735"/>
            <exon e_start="75375" e_stop="75346"/>
            <exon e_start="75253" e_stop="75167"/>
            <exon e_start="75071" e_stop="74922"/>
            <exon e_start="74835" e_stop="74780"/>
            <exon e_start="74684" e_stop="74564"/>
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          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGTTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT : ACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC : AACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACA : GTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG : GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTG : ATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG : GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG : AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG : GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG : CATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG : GCTGAAAGTTCCAGTGGGTCACAGGAGCAG : GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG : GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG : GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG : GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG : GTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG : GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG : GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG : ATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG : CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCACATCTTTGTGTAAATCTTATGCTTTGGTGTTTCTATATTGTCCTTGCAACCCCTGGATTACTAATGTGGGCAAT</gDNA_template>
            <first_frame> A  S  S  S  R  L  P  *  L  A  R  S  S  S  A  I  S  S  C  F  L  Q  P  N  C   : Y  *  P  D  E  D  N  R  A  G  G  R  M  E  L  H  A  E  G  N  H  K  I  K  E  N  L  R  R  P  S  R  F  I  Q  L  R  R  V  H  D  A  L  H  :  N  Y  L  *  H  V  Y  T  E  A  P  S  *  L  L  S  A  V  I  *  E  I  Q  G  S  L  *  R  V  H  Q  F  Y   : S  S  I  F  F  E  R  E  A  R  R  V  H  A  E  G  A  R  E  K  M  G  K  S  *  T  Y  G  Q  V  A  F  T  V  L  P  L  S  *  S  V  F  Y  C  S  K  V  T  P  C  T  *  *  S  W  S  D  V  L  P  *  F   : G  L  S  R  V  E  K  *  S  *  R  C  S  Y  S  A   : D  *  S  R  T  *  G  *  T  D  *  *  S  L  I  K  E  R  A  R  Y  I  C  *  N  W  D  G  G  N  G  V  L  *  K  *  L  *  R  C  N  A  *  R  Y  I  S  L  L  F  S  K  S  I  K  L  D  C  G  R  F  L  S  R  L  Y  V  E   : G  R  R  V  L  E  K  R  E  G  *  S  F  S  L  F  A  L  K  Q  R  D  K  T  S  G   : E  S  A  K  *  I  I  G  C  I  Y  Q  S  I  A  *  E  G  A  F  W  M  P  S  F  A  *  R  *  *   : G  R  G  F  I  S  N  V  Q  A  I  P  Q  D  P  *  R  F  G  T  S  C  K  Y  V  *  A   : A  C  H  C  *  R  H  G  I  G  A  T  G  R  R  L  S  K  *  Q   : G  *  K  F  Q  W  V  T  G  A   : G  L  C  *  E  G  Y  *  A  A  *  Q  I  Y  G  I  C  D  R  Q  F  C  K  *  L  S  L  S  Q   : G  F  E  R  G  I  *  G  L  L  *  Q  N  C  C  W  L  F  *  C  R  T  P  C  L  L  L  *  *  Y  P  *  E  G  R  E  *  E  T  Q  *  *  C  Y  *  G  D  I  R  *   : G  G  E  A  S  C  V  Y  Q  *  Q  G  P  F  C  *  V  L  Q  :  E  E  A  F  S  A  T  A  F  *  *  K  C  Q  *  *  P  *  K  A  Y  L  N  K  V  K  A  A  V  W  W  T  V  Y  V  K  D  G  G  N   : G  D  G  L  D  S  G  E  G  K  S  E  S  L  S  G  I  S  Q  *  Q  L  G  S  *  S  R  N  *  F  D  C  H  S  S  Y  N  W  L  L  A  *  L  *  I  F  *  S  E  S  P  C  G  N   : G  E  V  C  R  S  L  Q  G  I  L  S  D  E  N  E  T  Q  E  I  D  L  D  L  F  T  G  Y  M  Q  Y  Q  W  Q  V  *  I  K  N  Y  *  T  Y  C  G  N  L  P   : G  C  C  S  I  T  V  *  C  F  R  *  I  E  L  L  R  Y  Q  K  S  V  K  F  G  *  *  *  L  D  Q  I  A  S  I  P  V  M  C  *  V  *  N  S  D  Q  R  A  *  Q  *  N  C  F  V  N  G  S  F  *  I  Q  L  Q  V  H  *  Q  N  E  E  D  *   : D  P  F  A  S  G  *  *  K  E  K  S  G  *  G  R  *  Q  G  Q  T  L  C  N  *  C  L  Y  C  A  H  Y  E  E  P  E  G  A  S  S  S  A  A  R  V  G  V  C  *  A  I  E  P  H  V  *   : A  *  F  Q  S  N  Q  K  E  D  *  R  S  Y  H  S  *  L  L  G  K  R  Q  R  E  P  K  L  V  Q  V  L  G  L  R  Q  Q  A  D  T  D  L  S  W  H  W  M  E  V  S  R  A  G  F  D  C  *  Q  R  F  F  L  T  F  A  *  V  G  N  L  C  S  C  *  Y  I  T  T  F  F  Q  K  V  A  L  E  F  P  F  Q  *  I  F  Q  P  C  T  F  F  P  *  Y  S  *  L  S  L  K  R  H  I  F  V  *  I  L  C  F  G  V  S  I  L  S  L  Q  P  L  D  Y  *  C  G  Q  </first_frame>
            <second_frame>  Q  V  L  L  V  C  P  S  S  L  A  P  L  P  R  S  P  R  V  F  C  N  Q  T  A  :  T  S  Q  M  K  T  I  E  L  E  E  G  W  N  F  M  Q  K  G  I  T  K  L  K  K  I  L  E  G  H  P  D  S  F  S  S  E  E  Y  M  M  L  Y  T :   T  I  Y  N  M  C  T  Q  K  P  P  H  D  Y  S  Q  Q  L  Y  E  K  Y  K  E  A  F  E  E  Y  I  N  S  T  :  V  L  S  S  L  R  E  K  H  D  E  F  M  L  R  E  L  V  K  R  W  A  N  H  K  L  M  V  R  W  L  S  R  F  F  H  Y  L  D  R  Y  F  I  A  R  R  S  L  P  A  L  N  E  V  G  L  T  C  F  R  D  L  :  V  Y  Q  E  L  K  S  K  A  R  D  A  V  I  A  L  :  I  D  Q  E  R  E  G  E  Q  I  D  R  A  L  L  K  N  V  L  G  I  F  V  E  I  G  M  G  E  M  E  F  Y  E  N  D  F  E  D  A  M  L  K  D  T  S  A  Y  Y  S  R  K  A  S  N  W  I  V  E  D  S  C  P  D  Y  M  L  K  :  A  E  E  C  L  K  K  E  K  D  R  V  S  H  Y  L  H  S  S  S  E  T  K  L  L  E  :  K  V  Q  N  E  L  L  V  V  Y  T  N  Q  L  L  E  K  E  H  S  G  C  R  A  L  L  R  D  D  K  :  V  E  D  L  S  R  M  Y  R  L  F  H  R  I  P  K  G  L  E  P  V  A  N  M  F  K  Q  :  H  V  T  A  E  G  M  V  L  V  Q  Q  A  E  D  S  A  S  N  K  :  A  E  S  S  S  G  S  Q  E  Q  :  V  F  V  R  K  V  I  E  L  H  D  K  Y  M  A  Y  V  T  D  S  F  A  N  N  S  L  F  H  K  :  A  L  K  E  A  F  E  V  F  C  N  K  I  V  A  G  C  S  S  A  E  L  L  A  S  Y  C  D  N  I  L  K  K  G  G  S  E  K  L  S  D  D  A  I  E  E  T  L  D  K  :  V  V  K  L  L  A  Y  I  S  D  K  D  L  F  A  E  F  Y  R :   K  K  L  S  R  R  L  L  F  D  K  S  A  N  D  D  H  E  R  L  I  L  T  K  L  K  Q  Q  C  G  G  Q  F  T  S  K  M  E  G  M  :  V  T  D  L  T  L  A  K  E  N  Q  S  H  F  Q  E  Y  L  S  N  N  S  A  A  N  P  G  I  D  L  T  V  T  V  L  T  T  G  F  W  P  S  Y  K  S  S  D  L  S  L  P  V  E  M  :  V  K  C  V  E  V  F  K  E  F  Y  Q  T  K  T  K  H  R  K  L  T  W  I  Y  S  L  G  T  C  N  I  N  G  K  F  E  S  K  T  I  E  L  I  V  G  T  Y  Q  :  A  A  A  L  L  L  F  N  A  S  D  R  L  S  Y  S  D  I  K  S  Q  L  N  L  A  D  D  D  L  I  R  L  L  Q  S  L  S  C  A  K  Y  K  I  L  T  K  E  P  S  N  R  T  V  S  S  T  D  H  F  E  F  N  S  K  F  T  D  R  M  R  R  I  R  :  I  P  L  P  P  V  D  E  R  K  K  V  V  E  D  V  D  K  D  R  R  Y  A  I  D  A  C  I  V  R  I  M  K  S  R  K  V  L  P  H  Q  Q  L  V  L  E  C  V  E  Q  L  S  R  M  F  K  :  P  D  F  K  A  I  K  K  R  I  E  D  L  I  T  R  D  Y  L  E  R  D  K  E  N  P  N  L  F  K  Y  L  A  *  G  N  K  L  I  L  T  C  L  G  T  G  W  K  *  V  E  L  D  L  I  V  S  S  D  F  F  *  P  L  P  E  *  A  T  C  A  V  V  S  I  S  P  L  F  F  R  R  W  H  L  N  F  P  F  S  K  Y  F  S  R  A  L  F  S  L  D  I  P  D  C  L  L  S  A  T  S  L  C  K  S  Y  A  L  V  F  L  Y  C  P  C  N  P  W  I  T  N  V  G  N </second_frame>
            <third_frame>   K  F  F  S  S  A  L  A  R  S  L  L  F  R  D  L  L  V  F  S  A  T  K  L  L :   L  A  R  *  R  Q  S  S  W  R  K  D  G  T  S  C  R  R  E  S  Q  N  *  R  K  S  *  K  A  I  Q  I  H  S  A  P  K  S  T  *  C  S  T   : Q  L  S  I  T  C  V  H  R  S  P  L  M  I  T  L  S  S  Y  M  R  N  T  R  K  P  L  K  S  T  S  I  L  Q :   F  Y  L  L  *  E  R  S  T  T  S  S  C  *  G  S  S  *  K  D  G  Q  I  I  N  L  W  S  G  G  F  H  G  S  S  I  I  L  I  G  I  L  L  L  E  G  H  S  L  H  L  M  K  L  V  *  R  A  S  V  I  W :   F  I  K  S  *  K  V  K  L  E  M  Q  L  *  R  * :   L  I  K  N  V  R  V  N  R  L  I  E  P  Y  *  R  T  C  *  V  Y  L  L  K  L  G  W  G  K  W  S  S  M  K  M  T  L  K  M  Q  C  L  K  I  H  Q  L  I  I  L  E  K  H  Q  T  G  L  W  K  I  L  V  Q  I  I  C  *  R :   Q  K  S  A  *  K  K  R  R  I  E  F  L  I  I  C  T  Q  A  A  R  Q  N  F  W  R :   K  C  K  M  N  Y  W  L  Y  I  P  I  N  C  L  R  R  S  I  L  D  A  E  L  C  L  E  M  I  R :   *  R  I  Y  L  E  C  T  G  Y  S  T  G  S  L  K  V  W  N  Q  L  Q  I  C  L  S  S :   M  S  L  L  K  A  W  Y  W  C  N  R  P  K  T  Q  Q  V  T  R :   L  K  V  P  V  G  H  R  S  R :   S  L  L  G  R  L  L  S  C  M  T  N  I  W  H  M  *  P  T  V  L  Q  I  T  L  S  F  T  R :   L  *  K  R  H  L  R  S  S  V  T  K  L  L  L  A  V  L  V  Q  N  S  L  P  L  I  V  I  I  S  L  R  R  A  G  V  R  N  S  V  M  M  L  L  R  R  H  *  I  R :   W  *  S  F  L  R  I  S  V  T  R  T  F  L  L  S  S  T   : G  R  S  F  L  G  D  C  F  L  I  K  V  P  M  M  T  M  K  G  L  S  *  Q  S  *  S  S  S  V  V  D  S  L  R  Q  R  W  R  E  W :   *  R  T  *  L  W  R  R  K  I  R  V  T  F  R  N  I  S  V  T  T  R  Q  L  I  P  E  L  I  *  L  S  Q  F  L  Q  L  A  F  G  L  V  I  N  L  L  I  *  V  S  L  W  K  W :   *  S  V  *  K  S  S  R  N  F  I  R  R  K  R  N  T  G  N  *  P  G  F  I  H  W  V  H  A  I  S  M  A  S  L  N  Q  K  L  L  N  L  L  W  E  L  T  R :   L  L  L  Y  Y  C  L  M  L  Q  I  D  *  V  T  Q  I  S  K  V  S  *  I  W  L  M  M  T  *  S  D  C  F  N  P  C  H  V  L  S  I  K  F  *  P  K  S  L  A  I  E  L  F  R  Q  R  I  I  L  N  S  T  P  S  S  L  T  E  *  G  G  L  G :   S  L  C  L  R  L  M  K  G  K  K  W  L  R  T  L  T  R  T  D  V  M  Q  L  M  L  V  L  C  A  L  *  R  A  G  R  C  F  L  I  S  S  S  C  W  S  V  L  S  N  *  A  A  C  L  S :   L  I  S  K  Q  S  K  R  G  L  K  I  L  S  L  V  T  T  W  K  E  T  K  R  T  Q  T  C  S  S  T  W  P  E  A  T  S  *  Y  *  L  V  L  A  L  D  G  S  E  *  S  W  I  *  L  L  A  A  I  F  F  D  L  C  L  S  R  Q  L  V  Q  L  L  V  Y  H  H  F  F  S  E  G  G  T  *  I  S  L  S  V  N  I  S  A  V  H  F  F  P  L  I  F  L  I  V  S  *  A  P  H  L  C  V  N  L  M  L  W  C  F  Y  I  V  L  A  T  P  G  L  L  M  W  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78797" stop="78723"/>
                    <exon start="78349" stop="78219"/>
                    <exon start="78107" stop="78008"/>
                    <exon start="77717" stop="77532"/>
                    <exon start="77407" stop="77360"/>
                    <exon start="77272" stop="77069"/>
                    <exon start="76971" stop="76894"/>
                    <exon start="76169" stop="76080"/>
                    <exon start="75971" stop="75891"/>
                    <exon start="75794" stop="75735"/>
                    <exon start="75375" stop="75346"/>
                    <exon start="75253" stop="75167"/>
                    <exon start="75071" stop="74922"/>
                    <exon start="74835" stop="74780"/>
                    <exon start="74684" stop="74564"/>
                    <exon start="74478" stop="74317"/>
                    <exon start="74209" stop="74066"/>
                    <exon start="73981" stop="73763"/>
                    <exon start="73662" stop="73495"/>
                    <exon start="72686" stop="72585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2289</number_coding_nucleotides>
                  <number_encoded_amino_acids>763</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVLLVCPSSLAPLPRSPRVFCNQTATSQMKTIELEEGWNFMQKGITKLKKILEGHPDSFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYEKYKEAFEEYINSTVLSSLREKHDEFMLRELVKRWANHKLMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLVYQELKSKARDAVIALIDQEREGEQIDRALLKNVLGIFVEIGMGEMEFYENDFEDAMLKDTSAYYSRKASNWIVEDSCPDYMLKAEECLKKEKDRVSHYLHSSSETKLLEKVQNELLVVYTNQLLEKEHSGCRALLRDDKVEDLSRMYRLFHRIPKGLEPVANMFKQHVTAEGMVLVQQAEDSASNKAESSSGSQEQVFVRKVIELHDKYMAYVTDSFANNSLFHKALKEAFEVFCNKIVAGCSSAELLASYCDNILKKGGSEKLSDDAIEETLDKVVKLLAYISDKDLFAEFYRKKLSRRLLFDKSANDDHERLILTKLKQQCGGQFTSKMEGMVTDLTLAKENQSHFQEYLSNNSAANPGIDLTVTVLTTGFWPSYKSSDLSLPVEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNINGKFESKTIELIVGTYQAAALLLFNASDRLSYSDIKSQLNLADDDLIRLLQSLSCAKYKILTKEPSNRTVSSTDHFEFNSKFTDRMRRIRIPLPPVDERKKVVEDVDKDRRYAIDACIVRIMKSRKVLPHQQLVLECVEQLSRMFKPDFKAIKKRIEDLITRDYLERDKENPNLFKYLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72485" stop="72285"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATCAVVSISPLFFRRWHLNFPFSKYFSRALFSLDIPDCLLSATSLCKSYALVFLYCPCNPWITNVGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78793" e_stop="78723"/>
            <exon e_start="78364" e_stop="78219"/>
            <exon e_start="78107" e_stop="78008"/>
            <exon e_start="77717" e_stop="77532"/>
            <exon e_start="77407" e_stop="77360"/>
            <exon e_start="77272" e_stop="77069"/>
            <exon e_start="76971" e_stop="76894"/>
            <exon e_start="76169" e_stop="76080"/>
            <exon e_start="75971" e_stop="75891"/>
            <exon e_start="75375" e_stop="75346"/>
            <exon e_start="75253" e_stop="75167"/>
            <exon e_start="75071" e_stop="74922"/>
            <exon e_start="74835" e_stop="74780"/>
            <exon e_start="74684" e_stop="74564"/>
            <exon e_start="74478" e_stop="74317"/>
            <exon e_start="74209" e_stop="74066"/>
            <exon e_start="73981" e_stop="73763"/>
            <exon e_start="73662" e_stop="73495"/>
            <exon e_start="72686" e_stop="72285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.880" e_score="0.981"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.285" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.058" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.791" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="78793" e_stop="78723" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.880">
            <gDNA_intron_boundary i_start="78722" i_stop="78365" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78364" e_stop="78219" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78107" e_stop="78008" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.285" acc_prob="0.996">
            <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77717" e_stop="77532" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77407" e_stop="77360" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.931">
            <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77272" e_stop="77069" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76971" e_stop="76894" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.862" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76169" e_stop="76080" e_length="90"/>
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          <intron i_serial="8" don_prob="0.999" acc_prob="0.802">
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          </intron>
          <exon e_serial="9" e_score="1.000">
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          <intron i_serial="9" don_prob="0.998" acc_prob="0.996">
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          </intron>
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            <gDNA_exon_boundary e_start="75375" e_stop="75346" e_length="30"/>
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          <intron i_serial="10" don_prob="0.998" acc_prob="0.907">
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          </intron>
          <exon e_serial="11" e_score="1.000">
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          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.998">
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          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="75071" e_stop="74922" e_length="150"/>
          </exon>
          <intron i_serial="12" don_prob="0.884" acc_prob="0.995">
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          </intron>
          <exon e_serial="13" e_score="1.000">
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          </exon>
          <intron i_serial="13" don_prob="0.951" acc_prob="0.981">
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          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="74684" e_stop="74564" e_length="121"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.978">
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          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="74478" e_stop="74317" e_length="162"/>
          </exon>
          <intron i_serial="15" don_prob="0.960" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="74209" e_stop="74066" e_length="144"/>
          </exon>
          <intron i_serial="16" don_prob="0.058" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="73981" e_stop="73763" e_length="219"/>
          </exon>
          <intron i_serial="17" don_prob="0.928" acc_prob="0.996">
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          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="73662" e_stop="73495" e_length="168"/>
          </exon>
          <intron i_serial="18" don_prob="0.791" acc_prob="0.967">
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          </intron>
          <exon e_serial="19" e_score="0.998">
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78793" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78774" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78755" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78748" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78344" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77663" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76080"/>
              <exon start="75971" stop="75950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77595" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77592" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77244" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76080"/>
              <exon start="75971" stop="75891"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75209" stop="75167"/>
              <exon start="75071" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75005" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74821" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74635" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74618" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74569" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
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              <exon start="73662" stop="73581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74464" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74348" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73947" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73864" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73817" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72684" stop="72358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72684" stop="72358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT : TTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC : AACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACA : GTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG : GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTG : ATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG : GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG : AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG : GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG : GCTGAAAGTTCCAGTGGGTCACAGGAGCAG : GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG : GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG : GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG : GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG : GTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG : GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG : GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG : ATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG : CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCACATCTTTGTGTAAATCTTATGCTTTGGTGTTTCTATATTGTCCTTGCAACCCCTGGATTACTAATGTGGGCAAT</gDNA_template>
            <first_frame> F  F  S  S  A  L  A  R  S  L  L  F  R  D  L  L  V  F  S  A  T  K  L  L :   L  C  L  *  R  L  A  R  *  R  Q  S  S  W  R  K  D  G  T  S  C  R  R  E  S  Q  N  *  R  K  S  *  K  A  I  Q  I  H  S  A  P  K  S  T  *  C  S  T   : Q  L  S  I  T  C  V  H  R  S  P  L  M  I  T  L  S  S  Y  M  R  N  T  R  K  P  L  K  S  T  S  I  L  Q :   F  Y  L  L  *  E  R  S  T  T  S  S  C  *  G  S  S  *  K  D  G  Q  I  I  N  L  W  S  G  G  F  H  G  S  S  I  I  L  I  G  I  L  L  L  E  G  H  S  L  H  L  M  K  L  V  *  R  A  S  V  I  W :   F  I  K  S  *  K  V  K  L  E  M  Q  L  *  R  * :   L  I  K  N  V  R  V  N  R  L  I  E  P  Y  *  R  T  C  *  V  Y  L  L  K  L  G  W  G  K  W  S  S  M  K  M  T  L  K  M  Q  C  L  K  I  H  Q  L  I  I  L  E  K  H  Q  T  G  L  W  K  I  L  V  Q  I  I  C  *  R :   Q  K  S  A  *  K  K  R  R  I  E  F  L  I  I  C  T  Q  A  A  R  Q  N  F  W  R :   K  C  K  M  N  Y  W  L  Y  I  P  I  N  C  L  R  R  S  I  L  D  A  E  L  C  L  E  M  I  R :   *  R  I  Y  L  E  C  T  G  Y  S  T  G  S  L  K  V  W  N  Q  L  Q  I  C  L  S  R :   L  K  V  P  V  G  H  R  S  R :   S  L  L  G  R  L  L  S  C  M  T  N  I  W  H  M  *  P  T  V  L  Q  I  T  L  S  F  T  R :   L  *  K  R  H  L  R  S  S  V  T  K  L  L  L  A  V  L  V  Q  N  S  L  P  L  I  V  I  I  S  L  R  R  A  G  V  R  N  S  V  M  M  L  L  R  R  H  *  I  R :   W  *  S  F  L  R  I  S  V  T  R  T  F  L  L  S  S  T   : G  R  S  F  L  G  D  C  F  L  I  K  V  P  M  M  T  M  K  G  L  S  *  Q  S  *  S  S  S  V  V  D  S  L  R  Q  R  W  R  E  W :   *  R  T  *  L  W  R  R  K  I  R  V  T  F  R  N  I  S  V  T  T  R  Q  L  I  P  E  L  I  *  L  S  Q  F  L  Q  L  A  F  G  L  V  I  N  L  L  I  *  V  S  L  W  K  W :   *  S  V  *  K  S  S  R  N  F  I  R  R  K  R  N  T  G  N  *  P  G  F  I  H  W  V  H  A  I  S  M  A  S  L  N  Q  K  L  L  N  L  L  W  E  L  T  R :   L  L  L  Y  Y  C  L  M  L  Q  I  D  *  V  T  Q  I  S  K  V  S  *  I  W  L  M  M  T  *  S  D  C  F  N  P  C  H  V  L  S  I  K  F  *  P  K  S  L  A  I  E  L  F  R  Q  R  I  I  L  N  S  T  P  S  S  L  T  E  *  G  G  L  G :   S  L  C  L  R  L  M  K  G  K  K  W  L  R  T  L  T  R  T  D  V  M  Q  L  M  L  V  L  C  A  L  *  R  A  G  R  C  F  L  I  S  S  S  C  W  S  V  L  S  N  *  A  A  C  L  S :   L  I  S  K  Q  S  K  R  G  L  K  I  L  S  L  V  T  T  W  K  E  T  K  R  T  Q  T  C  S  S  T  W  P  E  A  T  S  *  Y  *  L  V  L  A  L  D  G  S  E  *  S  W  I  *  L  L  A  A  I  F  F  D  L  C  L  S  R  Q  L  V  Q  L  L  V  Y  H  H  F  F  S  E  G  G  T  *  I  S  L  S  V  N  I  S  A  V  H  F  F  P  L  I  F  L  I  V  S  *  A  P  H  L  C  V  N  L  M  L  W  C  F  Y  I  V  L  A  T  P  G  L  L  M  W  A   </first_frame>
            <second_frame>  S  S  R  L  P  *  L  A  R  S  S  S  A  I  S  S  C  F  L  Q  P  N  C   : F  C  V  Y  D  D  *  P  D  E  D  N  R  A  G  G  R  M  E  L  H  A  E  G  N  H  K  I  K  E  N  L  R  R  P  S  R  F  I  Q  L  R  R  V  H  D  A  L  H  :  N  Y  L  *  H  V  Y  T  E  A  P  S  *  L  L  S  A  V  I  *  E  I  Q  G  S  L  *  R  V  H  Q  F  Y   : S  S  I  F  F  E  R  E  A  R  R  V  H  A  E  G  A  R  E  K  M  G  K  S  *  T  Y  G  Q  V  A  F  T  V  L  P  L  S  *  S  V  F  Y  C  S  K  V  T  P  C  T  *  *  S  W  S  D  V  L  P  *  F   : G  L  S  R  V  E  K  *  S  *  R  C  S  Y  S  A   : D  *  S  R  T  *  G  *  T  D  *  *  S  L  I  K  E  R  A  R  Y  I  C  *  N  W  D  G  G  N  G  V  L  *  K  *  L  *  R  C  N  A  *  R  Y  I  S  L  L  F  S  K  S  I  K  L  D  C  G  R  F  L  S  R  L  Y  V  E   : G  R  R  V  L  E  K  R  E  G  *  S  F  S  L  F  A  L  K  Q  R  D  K  T  S  G   : E  S  A  K  *  I  I  G  C  I  Y  Q  S  I  A  *  E  G  A  F  W  M  P  S  F  A  *  R  *  *   : G  R  G  F  I  S  N  V  Q  A  I  P  Q  D  P  *  R  F  G  T  S  C  K  Y  V  *  A   : G  *  K  F  Q  W  V  T  G  A   : G  L  C  *  E  G  Y  *  A  A  *  Q  I  Y  G  I  C  D  R  Q  F  C  K  *  L  S  L  S  Q   : G  F  E  R  G  I  *  G  L  L  *  Q  N  C  C  W  L  F  *  C  R  T  P  C  L  L  L  *  *  Y  P  *  E  G  R  E  *  E  T  Q  *  *  C  Y  *  G  D  I  R  *   : G  G  E  A  S  C  V  Y  Q  *  Q  G  P  F  C  *  V  L  Q  :  E  E  A  F  S  A  T  A  F  *  *  K  C  Q  *  *  P  *  K  A  Y  L  N  K  V  K  A  A  V  W  W  T  V  Y  V  K  D  G  G  N   : G  D  G  L  D  S  G  E  G  K  S  E  S  L  S  G  I  S  Q  *  Q  L  G  S  *  S  R  N  *  F  D  C  H  S  S  Y  N  W  L  L  A  *  L  *  I  F  *  S  E  S  P  C  G  N   : G  E  V  C  R  S  L  Q  G  I  L  S  D  E  N  E  T  Q  E  I  D  L  D  L  F  T  G  Y  M  Q  Y  Q  W  Q  V  *  I  K  N  Y  *  T  Y  C  G  N  L  P   : G  C  C  S  I  T  V  *  C  F  R  *  I  E  L  L  R  Y  Q  K  S  V  K  F  G  *  *  *  L  D  Q  I  A  S  I  P  V  M  C  *  V  *  N  S  D  Q  R  A  *  Q  *  N  C  F  V  N  G  S  F  *  I  Q  L  Q  V  H  *  Q  N  E  E  D  *   : D  P  F  A  S  G  *  *  K  E  K  S  G  *  G  R  *  Q  G  Q  T  L  C  N  *  C  L  Y  C  A  H  Y  E  E  P  E  G  A  S  S  S  A  A  R  V  G  V  C  *  A  I  E  P  H  V  *   : A  *  F  Q  S  N  Q  K  E  D  *  R  S  Y  H  S  *  L  L  G  K  R  Q  R  E  P  K  L  V  Q  V  L  G  L  R  Q  Q  A  D  T  D  L  S  W  H  W  M  E  V  S  R  A  G  F  D  C  *  Q  R  F  F  L  T  F  A  *  V  G  N  L  C  S  C  *  Y  I  T  T  F  F  Q  K  V  A  L  E  F  P  F  Q  *  I  F  Q  P  C  T  F  F  P  *  Y  S  *  L  S  L  K  R  H  I  F  V  *  I  L  C  F  G  V  S  I  L  S  L  Q  P  L  D  Y  *  C  G  Q  </second_frame>
            <third_frame>   L  L  V  C  P  S  S  L  A  P  L  P  R  S  P  R  V  F  C  N  Q  T  A  :  F  V  F  M  T  T  S  Q  M  K  T  I  E  L  E  E  G  W  N  F  M  Q  K  G  I  T  K  L  K  K  I  L  E  G  H  P  D  S  F  S  S  E  E  Y  M  M  L  Y  T :   T  I  Y  N  M  C  T  Q  K  P  P  H  D  Y  S  Q  Q  L  Y  E  K  Y  K  E  A  F  E  E  Y  I  N  S  T  :  V  L  S  S  L  R  E  K  H  D  E  F  M  L  R  E  L  V  K  R  W  A  N  H  K  L  M  V  R  W  L  S  R  F  F  H  Y  L  D  R  Y  F  I  A  R  R  S  L  P  A  L  N  E  V  G  L  T  C  F  R  D  L  :  V  Y  Q  E  L  K  S  K  A  R  D  A  V  I  A  L  :  I  D  Q  E  R  E  G  E  Q  I  D  R  A  L  L  K  N  V  L  G  I  F  V  E  I  G  M  G  E  M  E  F  Y  E  N  D  F  E  D  A  M  L  K  D  T  S  A  Y  Y  S  R  K  A  S  N  W  I  V  E  D  S  C  P  D  Y  M  L  K  :  A  E  E  C  L  K  K  E  K  D  R  V  S  H  Y  L  H  S  S  S  E  T  K  L  L  E  :  K  V  Q  N  E  L  L  V  V  Y  T  N  Q  L  L  E  K  E  H  S  G  C  R  A  L  L  R  D  D  K  :  V  E  D  L  S  R  M  Y  R  L  F  H  R  I  P  K  G  L  E  P  V  A  N  M  F  K  Q  :  A  E  S  S  S  G  S  Q  E  Q  :  V  F  V  R  K  V  I  E  L  H  D  K  Y  M  A  Y  V  T  D  S  F  A  N  N  S  L  F  H  K  :  A  L  K  E  A  F  E  V  F  C  N  K  I  V  A  G  C  S  S  A  E  L  L  A  S  Y  C  D  N  I  L  K  K  G  G  S  E  K  L  S  D  D  A  I  E  E  T  L  D  K  :  V  V  K  L  L  A  Y  I  S  D  K  D  L  F  A  E  F  Y  R :   K  K  L  S  R  R  L  L  F  D  K  S  A  N  D  D  H  E  R  L  I  L  T  K  L  K  Q  Q  C  G  G  Q  F  T  S  K  M  E  G  M  :  V  T  D  L  T  L  A  K  E  N  Q  S  H  F  Q  E  Y  L  S  N  N  S  A  A  N  P  G  I  D  L  T  V  T  V  L  T  T  G  F  W  P  S  Y  K  S  S  D  L  S  L  P  V  E  M  :  V  K  C  V  E  V  F  K  E  F  Y  Q  T  K  T  K  H  R  K  L  T  W  I  Y  S  L  G  T  C  N  I  N  G  K  F  E  S  K  T  I  E  L  I  V  G  T  Y  Q  :  A  A  A  L  L  L  F  N  A  S  D  R  L  S  Y  S  D  I  K  S  Q  L  N  L  A  D  D  D  L  I  R  L  L  Q  S  L  S  C  A  K  Y  K  I  L  T  K  E  P  S  N  R  T  V  S  S  T  D  H  F  E  F  N  S  K  F  T  D  R  M  R  R  I  R  :  I  P  L  P  P  V  D  E  R  K  K  V  V  E  D  V  D  K  D  R  R  Y  A  I  D  A  C  I  V  R  I  M  K  S  R  K  V  L  P  H  Q  Q  L  V  L  E  C  V  E  Q  L  S  R  M  F  K  :  P  D  F  K  A  I  K  K  R  I  E  D  L  I  T  R  D  Y  L  E  R  D  K  E  N  P  N  L  F  K  Y  L  A  *  G  N  K  L  I  L  T  C  L  G  T  G  W  K  *  V  E  L  D  L  I  V  S  S  D  F  F  *  P  L  P  E  *  A  T  C  A  V  V  S  I  S  P  L  F  F  R  R  W  H  L  N  F  P  F  S  K  Y  F  S  R  A  L  F  S  L  D  I  P  D  C  L  L  S  A  T  S  L  C  K  S  Y  A  L  V  F  L  Y  C  P  C  N  P  W  I  T  N  V  G  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78791" stop="78723"/>
                    <exon start="78364" stop="78219"/>
                    <exon start="78107" stop="78008"/>
                    <exon start="77717" stop="77532"/>
                    <exon start="77407" stop="77360"/>
                    <exon start="77272" stop="77069"/>
                    <exon start="76971" stop="76894"/>
                    <exon start="76169" stop="76080"/>
                    <exon start="75971" stop="75891"/>
                    <exon start="75375" stop="75346"/>
                    <exon start="75253" stop="75167"/>
                    <exon start="75071" stop="74922"/>
                    <exon start="74835" stop="74780"/>
                    <exon start="74684" stop="74564"/>
                    <exon start="74478" stop="74317"/>
                    <exon start="74209" stop="74066"/>
                    <exon start="73981" stop="73763"/>
                    <exon start="73662" stop="73495"/>
                    <exon start="72686" stop="72585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2238</number_coding_nucleotides>
                  <number_encoded_amino_acids>746</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVCPSSLAPLPRSPRVFCNQTAFVFMTTSQMKTIELEEGWNFMQKGITKLKKILEGHPDSFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYEKYKEAFEEYINSTVLSSLREKHDEFMLRELVKRWANHKLMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLVYQELKSKARDAVIALIDQEREGEQIDRALLKNVLGIFVEIGMGEMEFYENDFEDAMLKDTSAYYSRKASNWIVEDSCPDYMLKAEECLKKEKDRVSHYLHSSSETKLLEKVQNELLVVYTNQLLEKEHSGCRALLRDDKVEDLSRMYRLFHRIPKGLEPVANMFKQAESSSGSQEQVFVRKVIELHDKYMAYVTDSFANNSLFHKALKEAFEVFCNKIVAGCSSAELLASYCDNILKKGGSEKLSDDAIEETLDKVVKLLAYISDKDLFAEFYRKKLSRRLLFDKSANDDHERLILTKLKQQCGGQFTSKMEGMVTDLTLAKENQSHFQEYLSNNSAANPGIDLTVTVLTTGFWPSYKSSDLSLPVEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNINGKFESKTIELIVGTYQAAALLLFNASDRLSYSDIKSQLNLADDDLIRLLQSLSCAKYKILTKEPSNRTVSSTDHFEFNSKFTDRMRRIRIPLPPVDERKKVVEDVDKDRRYAIDACIVRIMKSRKVLPHQQLVLECVEQLSRMFKPDFKAIKKRIEDLITRDYLERDKENPNLFKYLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72485" stop="72285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATCAVVSISPLFFRRWHLNFPFSKYFSRALFSLDIPDCLLSATSLCKSYALVFLYCPCNPWITNVGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="78834" e_stop="78723"/>
            <exon e_start="78364" e_stop="78219"/>
            <exon e_start="78107" e_stop="77959"/>
            <exon e_start="77717" e_stop="77532"/>
            <exon e_start="77407" e_stop="77360"/>
            <exon e_start="77272" e_stop="77069"/>
            <exon e_start="76971" e_stop="76894"/>
            <exon e_start="76169" e_stop="76080"/>
            <exon e_start="75971" e_stop="75891"/>
            <exon e_start="75794" e_stop="75735"/>
            <exon e_start="75375" e_stop="75346"/>
            <exon e_start="75253" e_stop="75167"/>
            <exon e_start="75071" e_stop="74922"/>
            <exon e_start="74835" e_stop="74780"/>
            <exon e_start="74684" e_stop="74564"/>
            <exon e_start="74478" e_stop="74317"/>
            <exon e_start="74209" e_stop="74066"/>
            <exon e_start="73981" e_stop="73763"/>
            <exon e_start="73662" e_stop="73495"/>
            <exon e_start="72686" e_stop="72285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.880" e_score="1.000"/>
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          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATAAATAAATAAAAAATAGTAAGAGTATATTTTGCAAGTTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT : TTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC : AACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACAGTAAGAACCATTGGCTTGAAATTTCTCTTAGCTTCTCACAGGGTTGAAG : GTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG : GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTG : ATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG : GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG : AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG : GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG : CATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG : GCTGAAAGTTCCAGTGGGTCACAGGAGCAG : GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG : GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG : GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG : GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG : GTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG : GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG : GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG : ATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG : CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCACATCTTTGTGTAAATCTTATGCTTTGGTGTTTCTATATTGTCCTTGCAACCCCTGGATTACTAATGTGGGCAAT</gDNA_template>
            <first_frame> K  I  N  K  *  K  I  V  R  V  Y  F  A  S  S  S  R  L  P  *  L  A  R  S  S  S  A  I  S  S  C  F  L  Q  P  N  C   : F  C  V  Y  D  D  *  P  D  E  D  N  R  A  G  G  R  M  E  L  H  A  E  G  N  H  K  I  K  E  N  L  R  R  P  S  R  F  I  Q  L  R  R  V  H  D  A  L  H  :  N  Y  L  *  H  V  Y  T  E  A  P  S  *  L  L  S  A  V  I  *  E  I  Q  G  S  L  *  R  V  H  Q  F  Y  S  K  N  H  W  L  E  I  S  L  S  F  S  Q  G  *  R :   F  Y  L  L  *  E  R  S  T  T  S  S  C  *  G  S  S  *  K  D  G  Q  I  I  N  L  W  S  G  G  F  H  G  S  S  I  I  L  I  G  I  L  L  L  E  G  H  S  L  H  L  M  K  L  V  *  R  A  S  V  I  W :   F  I  K  S  *  K  V  K  L  E  M  Q  L  *  R  * :   L  I  K  N  V  R  V  N  R  L  I  E  P  Y  *  R  T  C  *  V  Y  L  L  K  L  G  W  G  K  W  S  S  M  K  M  T  L  K  M  Q  C  L  K  I  H  Q  L  I  I  L  E  K  H  Q  T  G  L  W  K  I  L  V  Q  I  I  C  *  R :   Q  K  S  A  *  K  K  R  R  I  E  F  L  I  I  C  T  Q  A  A  R  Q  N  F  W  R :   K  C  K  M  N  Y  W  L  Y  I  P  I  N  C  L  R  R  S  I  L  D  A  E  L  C  L  E  M  I  R :   *  R  I  Y  L  E  C  T  G  Y  S  T  G  S  L  K  V  W  N  Q  L  Q  I  C  L  S  S :   M  S  L  L  K  A  W  Y  W  C  N  R  P  K  T  Q  Q  V  T  R :   L  K  V  P  V  G  H  R  S  R :   S  L  L  G  R  L  L  S  C  M  T  N  I  W  H  M  *  P  T  V  L  Q  I  T  L  S  F  T  R :   L  *  K  R  H  L  R  S  S  V  T  K  L  L  L  A  V  L  V  Q  N  S  L  P  L  I  V  I  I  S  L  R  R  A  G  V  R  N  S  V  M  M  L  L  R  R  H  *  I  R :   W  *  S  F  L  R  I  S  V  T  R  T  F  L  L  S  S  T   : G  R  S  F  L  G  D  C  F  L  I  K  V  P  M  M  T  M  K  G  L  S  *  Q  S  *  S  S  S  V  V  D  S  L  R  Q  R  W  R  E  W :   *  R  T  *  L  W  R  R  K  I  R  V  T  F  R  N  I  S  V  T  T  R  Q  L  I  P  E  L  I  *  L  S  Q  F  L  Q  L  A  F  G  L  V  I  N  L  L  I  *  V  S  L  W  K  W :   *  S  V  *  K  S  S  R  N  F  I  R  R  K  R  N  T  G  N  *  P  G  F  I  H  W  V  H  A  I  S  M  A  S  L  N  Q  K  L  L  N  L  L  W  E  L  T  R :   L  L  L  Y  Y  C  L  M  L  Q  I  D  *  V  T  Q  I  S  K  V  S  *  I  W  L  M  M  T  *  S  D  C  F  N  P  C  H  V  L  S  I  K  F  *  P  K  S  L  A  I  E  L  F  R  Q  R  I  I  L  N  S  T  P  S  S  L  T  E  *  G  G  L  G :   S  L  C  L  R  L  M  K  G  K  K  W  L  R  T  L  T  R  T  D  V  M  Q  L  M  L  V  L  C  A  L  *  R  A  G  R  C  F  L  I  S  S  S  C  W  S  V  L  S  N  *  A  A  C  L  S :   L  I  S  K  Q  S  K  R  G  L  K  I  L  S  L  V  T  T  W  K  E  T  K  R  T  Q  T  C  S  S  T  W  P  E  A  T  S  *  Y  *  L  V  L  A  L  D  G  S  E  *  S  W  I  *  L  L  A  A  I  F  F  D  L  C  L  S  R  Q  L  V  Q  L  L  V  Y  H  H  F  F  S  E  G  G  T  *  I  S  L  S  V  N  I  S  A  V  H  F  F  P  L  I  F  L  I  V  S  *  A  P  H  L  C  V  N  L  M  L  W  C  F  Y  I  V  L  A  T  P  G  L  L  M  W  A   </first_frame>
            <second_frame>  K  *  I  N  K  K  *  *  E  Y  I  L  Q  V  L  L  V  C  P  S  S  L  A  P  L  P  R  S  P  R  V  F  C  N  Q  T  A  :  F  V  F  M  T  T  S  Q  M  K  T  I  E  L  E  E  G  W  N  F  M  Q  K  G  I  T  K  L  K  K  I  L  E  G  H  P  D  S  F  S  S  E  E  Y  M  M  L  Y  T :   T  I  Y  N  M  C  T  Q  K  P  P  H  D  Y  S  Q  Q  L  Y  E  K  Y  K  E  A  F  E  E  Y  I  N  S  T  V  R  T  I  G  L  K  F  L  L  A  S  H  R  V  E   : G  S  I  F  F  E  R  E  A  R  R  V  H  A  E  G  A  R  E  K  M  G  K  S  *  T  Y  G  Q  V  A  F  T  V  L  P  L  S  *  S  V  F  Y  C  S  K  V  T  P  C  T  *  *  S  W  S  D  V  L  P  *  F   : G  L  S  R  V  E  K  *  S  *  R  C  S  Y  S  A   : D  *  S  R  T  *  G  *  T  D  *  *  S  L  I  K  E  R  A  R  Y  I  C  *  N  W  D  G  G  N  G  V  L  *  K  *  L  *  R  C  N  A  *  R  Y  I  S  L  L  F  S  K  S  I  K  L  D  C  G  R  F  L  S  R  L  Y  V  E   : G  R  R  V  L  E  K  R  E  G  *  S  F  S  L  F  A  L  K  Q  R  D  K  T  S  G   : E  S  A  K  *  I  I  G  C  I  Y  Q  S  I  A  *  E  G  A  F  W  M  P  S  F  A  *  R  *  *   : G  R  G  F  I  S  N  V  Q  A  I  P  Q  D  P  *  R  F  G  T  S  C  K  Y  V  *  A   : A  C  H  C  *  R  H  G  I  G  A  T  G  R  R  L  S  K  *  Q   : G  *  K  F  Q  W  V  T  G  A   : G  L  C  *  E  G  Y  *  A  A  *  Q  I  Y  G  I  C  D  R  Q  F  C  K  *  L  S  L  S  Q   : G  F  E  R  G  I  *  G  L  L  *  Q  N  C  C  W  L  F  *  C  R  T  P  C  L  L  L  *  *  Y  P  *  E  G  R  E  *  E  T  Q  *  *  C  Y  *  G  D  I  R  *   : G  G  E  A  S  C  V  Y  Q  *  Q  G  P  F  C  *  V  L  Q  :  E  E  A  F  S  A  T  A  F  *  *  K  C  Q  *  *  P  *  K  A  Y  L  N  K  V  K  A  A  V  W  W  T  V  Y  V  K  D  G  G  N   : G  D  G  L  D  S  G  E  G  K  S  E  S  L  S  G  I  S  Q  *  Q  L  G  S  *  S  R  N  *  F  D  C  H  S  S  Y  N  W  L  L  A  *  L  *  I  F  *  S  E  S  P  C  G  N   : G  E  V  C  R  S  L  Q  G  I  L  S  D  E  N  E  T  Q  E  I  D  L  D  L  F  T  G  Y  M  Q  Y  Q  W  Q  V  *  I  K  N  Y  *  T  Y  C  G  N  L  P   : G  C  C  S  I  T  V  *  C  F  R  *  I  E  L  L  R  Y  Q  K  S  V  K  F  G  *  *  *  L  D  Q  I  A  S  I  P  V  M  C  *  V  *  N  S  D  Q  R  A  *  Q  *  N  C  F  V  N  G  S  F  *  I  Q  L  Q  V  H  *  Q  N  E  E  D  *   : D  P  F  A  S  G  *  *  K  E  K  S  G  *  G  R  *  Q  G  Q  T  L  C  N  *  C  L  Y  C  A  H  Y  E  E  P  E  G  A  S  S  S  A  A  R  V  G  V  C  *  A  I  E  P  H  V  *   : A  *  F  Q  S  N  Q  K  E  D  *  R  S  Y  H  S  *  L  L  G  K  R  Q  R  E  P  K  L  V  Q  V  L  G  L  R  Q  Q  A  D  T  D  L  S  W  H  W  M  E  V  S  R  A  G  F  D  C  *  Q  R  F  F  L  T  F  A  *  V  G  N  L  C  S  C  *  Y  I  T  T  F  F  Q  K  V  A  L  E  F  P  F  Q  *  I  F  Q  P  C  T  F  F  P  *  Y  S  *  L  S  L  K  R  H  I  F  V  *  I  L  C  F  G  V  S  I  L  S  L  Q  P  L  D  Y  *  C  G  Q  </second_frame>
            <third_frame>   N  K  *  I  K  N  S  K  S  I  F  C  K  F  F  S  S  A  L  A  R  S  L  L  F  R  D  L  L  V  F  S  A  T  K  L  L :   L  C  L  *  R  L  A  R  *  R  Q  S  S  W  R  K  D  G  T  S  C  R  R  E  S  Q  N  *  R  K  S  *  K  A  I  Q  I  H  S  A  P  K  S  T  *  C  S  T   : Q  L  S  I  T  C  V  H  R  S  P  L  M  I  T  L  S  S  Y  M  R  N  T  R  K  P  L  K  S  T  S  I  L  Q  *  E  P  L  A  *  N  F  S  *  L  L  T  G  L  K  :  V  L  S  S  L  R  E  K  H  D  E  F  M  L  R  E  L  V  K  R  W  A  N  H  K  L  M  V  R  W  L  S  R  F  F  H  Y  L  D  R  Y  F  I  A  R  R  S  L  P  A  L  N  E  V  G  L  T  C  F  R  D  L  :  V  Y  Q  E  L  K  S  K  A  R  D  A  V  I  A  L  :  I  D  Q  E  R  E  G  E  Q  I  D  R  A  L  L  K  N  V  L  G  I  F  V  E  I  G  M  G  E  M  E  F  Y  E  N  D  F  E  D  A  M  L  K  D  T  S  A  Y  Y  S  R  K  A  S  N  W  I  V  E  D  S  C  P  D  Y  M  L  K  :  A  E  E  C  L  K  K  E  K  D  R  V  S  H  Y  L  H  S  S  S  E  T  K  L  L  E  :  K  V  Q  N  E  L  L  V  V  Y  T  N  Q  L  L  E  K  E  H  S  G  C  R  A  L  L  R  D  D  K  :  V  E  D  L  S  R  M  Y  R  L  F  H  R  I  P  K  G  L  E  P  V  A  N  M  F  K  Q  :  H  V  T  A  E  G  M  V  L  V  Q  Q  A  E  D  S  A  S  N  K  :  A  E  S  S  S  G  S  Q  E  Q  :  V  F  V  R  K  V  I  E  L  H  D  K  Y  M  A  Y  V  T  D  S  F  A  N  N  S  L  F  H  K  :  A  L  K  E  A  F  E  V  F  C  N  K  I  V  A  G  C  S  S  A  E  L  L  A  S  Y  C  D  N  I  L  K  K  G  G  S  E  K  L  S  D  D  A  I  E  E  T  L  D  K  :  V  V  K  L  L  A  Y  I  S  D  K  D  L  F  A  E  F  Y  R :   K  K  L  S  R  R  L  L  F  D  K  S  A  N  D  D  H  E  R  L  I  L  T  K  L  K  Q  Q  C  G  G  Q  F  T  S  K  M  E  G  M  :  V  T  D  L  T  L  A  K  E  N  Q  S  H  F  Q  E  Y  L  S  N  N  S  A  A  N  P  G  I  D  L  T  V  T  V  L  T  T  G  F  W  P  S  Y  K  S  S  D  L  S  L  P  V  E  M  :  V  K  C  V  E  V  F  K  E  F  Y  Q  T  K  T  K  H  R  K  L  T  W  I  Y  S  L  G  T  C  N  I  N  G  K  F  E  S  K  T  I  E  L  I  V  G  T  Y  Q  :  A  A  A  L  L  L  F  N  A  S  D  R  L  S  Y  S  D  I  K  S  Q  L  N  L  A  D  D  D  L  I  R  L  L  Q  S  L  S  C  A  K  Y  K  I  L  T  K  E  P  S  N  R  T  V  S  S  T  D  H  F  E  F  N  S  K  F  T  D  R  M  R  R  I  R  :  I  P  L  P  P  V  D  E  R  K  K  V  V  E  D  V  D  K  D  R  R  Y  A  I  D  A  C  I  V  R  I  M  K  S  R  K  V  L  P  H  Q  Q  L  V  L  E  C  V  E  Q  L  S  R  M  F  K  :  P  D  F  K  A  I  K  K  R  I  E  D  L  I  T  R  D  Y  L  E  R  D  K  E  N  P  N  L  F  K  Y  L  A  *  G  N  K  L  I  L  T  C  L  G  T  G  W  K  *  V  E  L  D  L  I  V  S  S  D  F  F  *  P  L  P  E  *  A  T  C  A  V  V  S  I  S  P  L  F  F  R  R  W  H  L  N  F  P  F  S  K  Y  F  S  R  A  L  F  S  L  D  I  P  D  C  L  L  S  A  T  S  L  C  K  S  Y  A  L  V  F  L  Y  C  P  C  N  P  W  I  T  N  V  G  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77976" stop="77959"/>
                    <exon start="77717" stop="77532"/>
                    <exon start="77407" stop="77360"/>
                    <exon start="77272" stop="77069"/>
                    <exon start="76971" stop="76894"/>
                    <exon start="76169" stop="76080"/>
                    <exon start="75971" stop="75891"/>
                    <exon start="75794" stop="75735"/>
                    <exon start="75375" stop="75346"/>
                    <exon start="75253" stop="75167"/>
                    <exon start="75071" stop="74922"/>
                    <exon start="74835" stop="74780"/>
                    <exon start="74684" stop="74564"/>
                    <exon start="74478" stop="74317"/>
                    <exon start="74209" stop="74066"/>
                    <exon start="73981" stop="73763"/>
                    <exon start="73662" stop="73495"/>
                    <exon start="72686" stop="72585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2001</number_coding_nucleotides>
                  <number_encoded_amino_acids>667</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTGLKVLSSLREKHDEFMLRELVKRWANHKLMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLVYQELKSKARDAVIALIDQEREGEQIDRALLKNVLGIFVEIGMGEMEFYENDFEDAMLKDTSAYYSRKASNWIVEDSCPDYMLKAEECLKKEKDRVSHYLHSSSETKLLEKVQNELLVVYTNQLLEKEHSGCRALLRDDKVEDLSRMYRLFHRIPKGLEPVANMFKQHVTAEGMVLVQQAEDSASNKAESSSGSQEQVFVRKVIELHDKYMAYVTDSFANNSLFHKALKEAFEVFCNKIVAGCSSAELLASYCDNILKKGGSEKLSDDAIEETLDKVVKLLAYISDKDLFAEFYRKKLSRRLLFDKSANDDHERLILTKLKQQCGGQFTSKMEGMVTDLTLAKENQSHFQEYLSNNSAANPGIDLTVTVLTTGFWPSYKSSDLSLPVEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNINGKFESKTIELIVGTYQAAALLLFNASDRLSYSDIKSQLNLADDDLIRLLQSLSCAKYKILTKEPSNRTVSSTDHFEFNSKFTDRMRRIRIPLPPVDERKKVVEDVDKDRRYAIDACIVRIMKSRKVLPHQQLVLECVEQLSRMFKPDFKAIKKRIEDLITRDYLERDKENPNLFKYLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72485" stop="72285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATCAVVSISPLFFRRWHLNFPFSKYFSRALFSLDIPDCLLSATSLCKSYALVFLYCPCNPWITNVGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="76181" e_stop="76080"/>
            <exon e_start="75971" e_stop="75891"/>
            <exon e_start="75794" e_stop="75735"/>
            <exon e_start="75375" e_stop="75346"/>
            <exon e_start="75253" e_stop="75167"/>
            <exon e_start="75071" e_stop="74922"/>
            <exon e_start="74835" e_stop="74780"/>
            <exon e_start="74684" e_stop="74564"/>
            <exon e_start="74478" e_stop="74317"/>
            <exon e_start="74209" e_stop="74066"/>
            <exon e_start="73981" e_stop="73763"/>
            <exon e_start="73662" e_stop="73495"/>
            <exon e_start="72686" e_stop="72285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.058" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.791" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76181" e_stop="76080" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.802">
            <gDNA_intron_boundary i_start="76079" i_stop="75972" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75971" e_stop="75891" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75890" i_stop="75795" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75794" e_stop="75735" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75734" i_stop="75376" i_length="359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75375" e_stop="75346" e_length="30"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.907">
            <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75253" e_stop="75167" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75071" e_stop="74922" e_length="150"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74921" i_stop="74836" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="74835" e_stop="74780" e_length="56"/>
          </exon>
          <intron i_serial="7" don_prob="0.951" acc_prob="0.981">
            <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74684" e_stop="74564" e_length="121"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="74563" i_stop="74479" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74478" e_stop="74317" e_length="162"/>
          </exon>
          <intron i_serial="9" don_prob="0.960" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74316" i_stop="74210" i_length="107"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="74209" e_stop="74066" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.058" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74065" i_stop="73982" i_length="84"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="73981" e_stop="73763" e_length="219"/>
          </exon>
          <intron i_serial="11" don_prob="0.928" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73762" i_stop="73663" i_length="100"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="73662" e_stop="73495" e_length="168"/>
          </exon>
          <intron i_serial="12" don_prob="0.791" acc_prob="0.967">
            <gDNA_intron_boundary i_start="73494" i_stop="72687" i_length="808"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="72686" e_stop="72285" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76181" stop="76080"/>
              <exon start="75971" stop="75891"/>
              <exon start="75794" stop="75735"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75167"/>
              <exon start="75071" stop="74939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76156" stop="76080"/>
              <exon start="75971" stop="75891"/>
              <exon start="75794" stop="75735"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75167"/>
              <exon start="75071" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76134" stop="76080"/>
              <exon start="75971" stop="75891"/>
              <exon start="75794" stop="75735"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75167"/>
              <exon start="75071" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75920" stop="75891"/>
              <exon start="75794" stop="75735"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75167"/>
              <exon start="75071" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75757" stop="75735"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75167"/>
              <exon start="75071" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75209" stop="75167"/>
              <exon start="75071" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75005" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74821" stop="74780"/>
              <exon start="74684" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74635" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74618" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74569" stop="74564"/>
              <exon start="74478" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74464" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74348" stop="74317"/>
              <exon start="74209" stop="74066"/>
              <exon start="73981" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73947" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73864" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73817" stop="73763"/>
              <exon start="73662" stop="73495"/>
              <exon start="72686" stop="72285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72684" stop="72358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72684" stop="72358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTGCTGCAGAAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG : GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG : CATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG : GCTGAAAGTTCCAGTGGGTCACAGGAGCAG : GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG : GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG : GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG : GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATG : GTGACGGACTTGACTCTGGCGAAGGAAAATCAGAGTCACTTTCAGGAATATCTCAGTAACAACTCGGCAGCTAATCCCGGAATTGATTTGACTGTCACAGTTCTTACAACTGGCTTTTGGCCTAGTTATAAATCTTCTGATCTGAGTCTCCCTGTGGAAATG : GTGAAGTGTGTAGAAGTCTTCAAGGAATTTTATCAGACGAAAACGAAACACAGGAAATTGACCTGGATTTATTCACTGGGTACATGCAATATCAATGGCAAGTTTGAATCAAAAACTATTGAACTTATTGTGGGAACTTACCAG : GCTGCTGCTCTATTACTGTTTAATGCTTCAGATAGATTGAGTTACTCAGATATCAAAAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAATCCCTGTCATGTGCTAAGTATAAAATTCTGACCAAAGAGCCTAGCAATAGAACTGTTTCGTCAACGGATCATTTTGAATTCAACTCCAAGTTCACTGACAGAATGAGGAGGATTAGG : ATCCCTTTGCCTCCGGTTGATGAAAGGAAAAAAGTGGTTGAGGACGTTGACAAGGACAGACGTTATGCAATTGATGCTTGTATTGTGCGCATTATGAAGAGCCGGAAGGTGCTTCCTCATCAGCAGCTCGTGTTGGAGTGTGTTGAGCAATTGAGCCGCATGTTTAAG : CCTGATTTCAAAGCAATCAAAAAGAGGATTGAAGATCTTATCACTCGTGACTACTTGGAAAGAGACAAAGAGAACCCAAACTTGTTCAAGTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGATTTGATTGTTAGCAGCGATTTTTTTTGACCTTTGCCTGAGTAGGCAACTTGTGCAGTTGTTAGTATATCACCACTTTTTTTCAGAAGGTGGCACTTGAATTTCCCTTTCAGTAAATATTTCAGCCGTGCACTTTTTTCCCTTGATATTCCTGATTGTCTCTTAAGCGCCACATCTTTGTGTAAATCTTATGCTTTGGTGTTTCTATATTGTCCTTGCAACCCCTGGATTACTAATGTGGGCAAT</gDNA_template>
            <first_frame> L  V  L  Q  K  V  Q  N  E  L  L  V  V  Y  T  N  Q  L  L  E  K  E  H  S  G  C  R  A  L  L  R  D  D  K  :  V  E  D  L  S  R  M  Y  R  L  F  H  R  I  P  K  G  L  E  P  V  A  N  M  F  K  Q  :  H  V  T  A  E  G  M  V  L  V  Q  Q  A  E  D  S  A  S  N  K  :  A  E  S  S  S  G  S  Q  E  Q  :  V  F  V  R  K  V  I  E  L  H  D  K  Y  M  A  Y  V  T  D  S  F  A  N  N  S  L  F  H  K  :  A  L  K  E  A  F  E  V  F  C  N  K  I  V  A  G  C  S  S  A  E  L  L  A  S  Y  C  D  N  I  L  K  K  G  G  S  E  K  L  S  D  D  A  I  E  E  T  L  D  K  :  V  V  K  L  L  A  Y  I  S  D  K  D  L  F  A  E  F  Y  R :   K  K  L  S  R  R  L  L  F  D  K  S  A  N  D  D  H  E  R  L  I  L  T  K  L  K  Q  Q  C  G  G  Q  F  T  S  K  M  E  G  M  :  V  T  D  L  T  L  A  K  E  N  Q  S  H  F  Q  E  Y  L  S  N  N  S  A  A  N  P  G  I  D  L  T  V  T  V  L  T  T  G  F  W  P  S  Y  K  S  S  D  L  S  L  P  V  E  M  :  V  K  C  V  E  V  F  K  E  F  Y  Q  T  K  T  K  H  R  K  L  T  W  I  Y  S  L  G  T  C  N  I  N  G  K  F  E  S  K  T  I  E  L  I  V  G  T  Y  Q  :  A  A  A  L  L  L  F  N  A  S  D  R  L  S  Y  S  D  I  K  S  Q  L  N  L  A  D  D  D  L  I  R  L  L  Q  S  L  S  C  A  K  Y  K  I  L  T  K  E  P  S  N  R  T  V  S  S  T  D  H  F  E  F  N  S  K  F  T  D  R  M  R  R  I  R  :  I  P  L  P  P  V  D  E  R  K  K  V  V  E  D  V  D  K  D  R  R  Y  A  I  D  A  C  I  V  R  I  M  K  S  R  K  V  L  P  H  Q  Q  L  V  L  E  C  V  E  Q  L  S  R  M  F  K  :  P  D  F  K  A  I  K  K  R  I  E  D  L  I  T  R  D  Y  L  E  R  D  K  E  N  P  N  L  F  K  Y  L  A  *  G  N  K  L  I  L  T  C  L  G  T  G  W  K  *  V  E  L  D  L  I  V  S  S  D  F  F  *  P  L  P  E  *  A  T  C  A  V  V  S  I  S  P  L  F  F  R  R  W  H  L  N  F  P  F  S  K  Y  F  S  R  A  L  F  S  L  D  I  P  D  C  L  L  S  A  T  S  L  C  K  S  Y  A  L  V  F  L  Y  C  P  C  N  P  W  I  T  N  V  G  N </first_frame>
            <second_frame>  L  C  C  R  K  C  K  M  N  Y  W  L  Y  I  P  I  N  C  L  R  R  S  I  L  D  A  E  L  C  L  E  M  I  R :   *  R  I  Y  L  E  C  T  G  Y  S  T  G  S  L  K  V  W  N  Q  L  Q  I  C  L  S  S :   M  S  L  L  K  A  W  Y  W  C  N  R  P  K  T  Q  Q  V  T  R :   L  K  V  P  V  G  H  R  S  R :   S  L  L  G  R  L  L  S  C  M  T  N  I  W  H  M  *  P  T  V  L  Q  I  T  L  S  F  T  R :   L  *  K  R  H  L  R  S  S  V  T  K  L  L  L  A  V  L  V  Q  N  S  L  P  L  I  V  I  I  S  L  R  R  A  G  V  R  N  S  V  M  M  L  L  R  R  H  *  I  R :   W  *  S  F  L  R  I  S  V  T  R  T  F  L  L  S  S  T   : G  R  S  F  L  G  D  C  F  L  I  K  V  P  M  M  T  M  K  G  L  S  *  Q  S  *  S  S  S  V  V  D  S  L  R  Q  R  W  R  E  W :   *  R  T  *  L  W  R  R  K  I  R  V  T  F  R  N  I  S  V  T  T  R  Q  L  I  P  E  L  I  *  L  S  Q  F  L  Q  L  A  F  G  L  V  I  N  L  L  I  *  V  S  L  W  K  W :   *  S  V  *  K  S  S  R  N  F  I  R  R  K  R  N  T  G  N  *  P  G  F  I  H  W  V  H  A  I  S  M  A  S  L  N  Q  K  L  L  N  L  L  W  E  L  T  R :   L  L  L  Y  Y  C  L  M  L  Q  I  D  *  V  T  Q  I  S  K  V  S  *  I  W  L  M  M  T  *  S  D  C  F  N  P  C  H  V  L  S  I  K  F  *  P  K  S  L  A  I  E  L  F  R  Q  R  I  I  L  N  S  T  P  S  S  L  T  E  *  G  G  L  G :   S  L  C  L  R  L  M  K  G  K  K  W  L  R  T  L  T  R  T  D  V  M  Q  L  M  L  V  L  C  A  L  *  R  A  G  R  C  F  L  I  S  S  S  C  W  S  V  L  S  N  *  A  A  C  L  S :   L  I  S  K  Q  S  K  R  G  L  K  I  L  S  L  V  T  T  W  K  E  T  K  R  T  Q  T  C  S  S  T  W  P  E  A  T  S  *  Y  *  L  V  L  A  L  D  G  S  E  *  S  W  I  *  L  L  A  A  I  F  F  D  L  C  L  S  R  Q  L  V  Q  L  L  V  Y  H  H  F  F  S  E  G  G  T  *  I  S  L  S  V  N  I  S  A  V  H  F  F  P  L  I  F  L  I  V  S  *  A  P  H  L  C  V  N  L  M  L  W  C  F  Y  I  V  L  A  T  P  G  L  L  M  W  A   </second_frame>
            <third_frame>   C  A  A  E  S  A  K  *  I  I  G  C  I  Y  Q  S  I  A  *  E  G  A  F  W  M  P  S  F  A  *  R  *  *   : G  R  G  F  I  S  N  V  Q  A  I  P  Q  D  P  *  R  F  G  T  S  C  K  Y  V  *  A   : A  C  H  C  *  R  H  G  I  G  A  T  G  R  R  L  S  K  *  Q   : G  *  K  F  Q  W  V  T  G  A   : G  L  C  *  E  G  Y  *  A  A  *  Q  I  Y  G  I  C  D  R  Q  F  C  K  *  L  S  L  S  Q   : G  F  E  R  G  I  *  G  L  L  *  Q  N  C  C  W  L  F  *  C  R  T  P  C  L  L  L  *  *  Y  P  *  E  G  R  E  *  E  T  Q  *  *  C  Y  *  G  D  I  R  *   : G  G  E  A  S  C  V  Y  Q  *  Q  G  P  F  C  *  V  L  Q  :  E  E  A  F  S  A  T  A  F  *  *  K  C  Q  *  *  P  *  K  A  Y  L  N  K  V  K  A  A  V  W  W  T  V  Y  V  K  D  G  G  N   : G  D  G  L  D  S  G  E  G  K  S  E  S  L  S  G  I  S  Q  *  Q  L  G  S  *  S  R  N  *  F  D  C  H  S  S  Y  N  W  L  L  A  *  L  *  I  F  *  S  E  S  P  C  G  N   : G  E  V  C  R  S  L  Q  G  I  L  S  D  E  N  E  T  Q  E  I  D  L  D  L  F  T  G  Y  M  Q  Y  Q  W  Q  V  *  I  K  N  Y  *  T  Y  C  G  N  L  P   : G  C  C  S  I  T  V  *  C  F  R  *  I  E  L  L  R  Y  Q  K  S  V  K  F  G  *  *  *  L  D  Q  I  A  S  I  P  V  M  C  *  V  *  N  S  D  Q  R  A  *  Q  *  N  C  F  V  N  G  S  F  *  I  Q  L  Q  V  H  *  Q  N  E  E  D  *   : D  P  F  A  S  G  *  *  K  E  K  S  G  *  G  R  *  Q  G  Q  T  L  C  N  *  C  L  Y  C  A  H  Y  E  E  P  E  G  A  S  S  S  A  A  R  V  G  V  C  *  A  I  E  P  H  V  *   : A  *  F  Q  S  N  Q  K  E  D  *  R  S  Y  H  S  *  L  L  G  K  R  Q  R  E  P  K  L  V  Q  V  L  G  L  R  Q  Q  A  D  T  D  L  S  W  H  W  M  E  V  S  R  A  G  F  D  C  *  Q  R  F  F  L  T  F  A  *  V  G  N  L  C  S  C  *  Y  I  T  T  F  F  Q  K  V  A  L  E  F  P  F  Q  *  I  F  Q  P  C  T  F  F  P  *  Y  S  *  L  S  L  K  R  H  I  F  V  *  I  L  C  F  G  V  S  I  L  S  L  Q  P  L  D  Y  *  C  G  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76181" stop="76080"/>
                    <exon start="75971" stop="75891"/>
                    <exon start="75794" stop="75735"/>
                    <exon start="75375" stop="75346"/>
                    <exon start="75253" stop="75167"/>
                    <exon start="75071" stop="74922"/>
                    <exon start="74835" stop="74780"/>
                    <exon start="74684" stop="74564"/>
                    <exon start="74478" stop="74317"/>
                    <exon start="74209" stop="74066"/>
                    <exon start="73981" stop="73763"/>
                    <exon start="73662" stop="73495"/>
                    <exon start="72686" stop="72585"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1479</number_coding_nucleotides>
                  <number_encoded_amino_acids>493</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLQKVQNELLVVYTNQLLEKEHSGCRALLRDDKVEDLSRMYRLFHRIPKGLEPVANMFKQHVTAEGMVLVQQAEDSASNKAESSSGSQEQVFVRKVIELHDKYMAYVTDSFANNSLFHKALKEAFEVFCNKIVAGCSSAELLASYCDNILKKGGSEKLSDDAIEETLDKVVKLLAYISDKDLFAEFYRKKLSRRLLFDKSANDDHERLILTKLKQQCGGQFTSKMEGMVTDLTLAKENQSHFQEYLSNNSAANPGIDLTVTVLTTGFWPSYKSSDLSLPVEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNINGKFESKTIELIVGTYQAAALLLFNASDRLSYSDIKSQLNLADDDLIRLLQSLSCAKYKILTKEPSNRTVSSTDHFEFNSKFTDRMRRIRIPLPPVDERKKVVEDVDKDRRYAIDACIVRIMKSRKVLPHQQLVLECVEQLSRMFKPDFKAIKKRIEDLITRDYLERDKENPNLFKYLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72485" stop="72285"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATCAVVSISPLFFRRWHLNFPFSKYFSRALFSLDIPDCLLSATSLCKSYALVFLYCPCNPWITNVGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="78793" e_stop="78723"/>
            <exon e_start="78364" e_stop="78219"/>
            <exon e_start="78107" e_stop="78008"/>
            <exon e_start="77717" e_stop="77532"/>
            <exon e_start="77407" e_stop="77360"/>
            <exon e_start="77272" e_stop="77069"/>
            <exon e_start="76971" e_stop="76894"/>
            <exon e_start="76169" e_stop="76080"/>
            <exon e_start="75971" e_stop="75891"/>
            <exon e_start="75794" e_stop="75735"/>
            <exon e_start="75375" e_stop="75346"/>
            <exon e_start="75253" e_stop="75167"/>
            <exon e_start="75071" e_stop="74922"/>
            <exon e_start="74835" e_stop="74780"/>
            <exon e_start="74684" e_stop="74560"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.880" e_score="0.981"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.285" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="78793" e_stop="78723" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.880">
            <gDNA_intron_boundary i_start="78722" i_stop="78365" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78364" e_stop="78219" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78107" e_stop="78008" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.285" acc_prob="0.996">
            <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77717" e_stop="77532" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77407" e_stop="77360" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.931">
            <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77272" e_stop="77069" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76971" e_stop="76894" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.862" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76169" e_stop="76080" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.802">
            <gDNA_intron_boundary i_start="76079" i_stop="75972" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="75971" e_stop="75891" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75890" i_stop="75795" i_length="96"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="75794" e_stop="75735" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75734" i_stop="75376" i_length="359"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="75375" e_stop="75346" e_length="30"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.907">
            <gDNA_intron_boundary i_start="75345" i_stop="75254" i_length="92"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="75253" e_stop="75167" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75166" i_stop="75072" i_length="95"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="75071" e_stop="74922" e_length="150"/>
          </exon>
          <intron i_serial="13" don_prob="0.884" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74921" i_stop="74836" i_length="86"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="74835" e_stop="74780" e_length="56"/>
          </exon>
          <intron i_serial="14" don_prob="0.951" acc_prob="0.981">
            <gDNA_intron_boundary i_start="74779" i_stop="74685" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="74684" e_stop="74560" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78793" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78774" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78755" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78748" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78344" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77663" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76080"/>
              <exon start="75971" stop="75950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77595" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77592" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77180" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76080"/>
              <exon start="75971" stop="75891"/>
              <exon start="75794" stop="75735"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75167"/>
              <exon start="75071" stop="74938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77160" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76080"/>
              <exon start="75971" stop="75891"/>
              <exon start="75794" stop="75735"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75167"/>
              <exon start="75071" stop="75035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76134" stop="76080"/>
              <exon start="75971" stop="75891"/>
              <exon start="75794" stop="75735"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75167"/>
              <exon start="75071" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75920" stop="75891"/>
              <exon start="75794" stop="75735"/>
              <exon start="75375" stop="75346"/>
              <exon start="75253" stop="75167"/>
              <exon start="75071" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75242" stop="75167"/>
              <exon start="75071" stop="74922"/>
              <exon start="74835" stop="74780"/>
              <exon start="74684" stop="74560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT : TTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC : AACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACA : GTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG : GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTG : ATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG : GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG : AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAG : GTAGAGGATTTATCTCGAATGTACAGGCTATTCCACAGGATCCCTAAAGGTTTGGAACCAGTTGCAAATATGTTTAAGCAG : CATGTCACTGCTGAAGGCATGGTATTGGTGCAACAGGCCGAAGACTCAGCAAGTAACAAG : GCTGAAAGTTCCAGTGGGTCACAGGAGCAG : GTCTTTGTTAGGAAGGTTATTGAGCTGCATGACAAATATATGGCATATGTGACCGACAGTTTTGCAAATAACTCTCTCTTTCACAAG : GCTTTGAAAGAGGCATTTGAGGTCTTCTGTAACAAAATTGTTGCTGGCTGTTCTAGTGCAGAACTCCTTGCCTCTTATTGTGATAATATCCTTAAGAAGGGCGGGAGTGAGAAACTCAGTGATGATGCTATTGAGGAGACATTAGATAAG : GTGGTGAAGCTTCTTGCGTATATCAGTGACAAGGACCTTTTTGCTGAGTTCTACAG : GAAGAAGCTTTCTCGGCGACTGCTTTTTGATAAAAGTGCCAATGATGACCATGAAAGGCTTATCTTAACAAAGTTAAAGCAGCAGTGTGGTGGACAGTTTACGTCAAAGATGGAGGGAATGGTGA</gDNA_template>
            <first_frame> F  F  S  S  A  L  A  R  S  L  L  F  R  D  L  L  V  F  S  A  T  K  L  L :   L  C  L  *  R  L  A  R  *  R  Q  S  S  W  R  K  D  G  T  S  C  R  R  E  S  Q  N  *  R  K  S  *  K  A  I  Q  I  H  S  A  P  K  S  T  *  C  S  T   : Q  L  S  I  T  C  V  H  R  S  P  L  M  I  T  L  S  S  Y  M  R  N  T  R  K  P  L  K  S  T  S  I  L  Q :   F  Y  L  L  *  E  R  S  T  T  S  S  C  *  G  S  S  *  K  D  G  Q  I  I  N  L  W  S  G  G  F  H  G  S  S  I  I  L  I  G  I  L  L  L  E  G  H  S  L  H  L  M  K  L  V  *  R  A  S  V  I  W :   F  I  K  S  *  K  V  K  L  E  M  Q  L  *  R  * :   L  I  K  N  V  R  V  N  R  L  I  E  P  Y  *  R  T  C  *  V  Y  L  L  K  L  G  W  G  K  W  S  S  M  K  M  T  L  K  M  Q  C  L  K  I  H  Q  L  I  I  L  E  K  H  Q  T  G  L  W  K  I  L  V  Q  I  I  C  *  R :   Q  K  S  A  *  K  K  R  R  I  E  F  L  I  I  C  T  Q  A  A  R  Q  N  F  W  R :   K  C  K  M  N  Y  W  L  Y  I  P  I  N  C  L  R  R  S  I  L  D  A  E  L  C  L  E  M  I  R :   *  R  I  Y  L  E  C  T  G  Y  S  T  G  S  L  K  V  W  N  Q  L  Q  I  C  L  S  S :   M  S  L  L  K  A  W  Y  W  C  N  R  P  K  T  Q  Q  V  T  R :   L  K  V  P  V  G  H  R  S  R :   S  L  L  G  R  L  L  S  C  M  T  N  I  W  H  M  *  P  T  V  L  Q  I  T  L  S  F  T  R :   L  *  K  R  H  L  R  S  S  V  T  K  L  L  L  A  V  L  V  Q  N  S  L  P  L  I  V  I  I  S  L  R  R  A  G  V  R  N  S  V  M  M  L  L  R  R  H  *  I  R :   W  *  S  F  L  R  I  S  V  T  R  T  F  L  L  S  S  T   : G  R  S  F  L  G  D  C  F  L  I  K  V  P  M  M  T  M  K  G  L  S  *  Q  S  *  S  S  S  V  V  D  S  L  R  Q  R  W  R  E  W  * </first_frame>
            <second_frame>  S  S  R  L  P  *  L  A  R  S  S  S  A  I  S  S  C  F  L  Q  P  N  C   : F  C  V  Y  D  D  *  P  D  E  D  N  R  A  G  G  R  M  E  L  H  A  E  G  N  H  K  I  K  E  N  L  R  R  P  S  R  F  I  Q  L  R  R  V  H  D  A  L  H  :  N  Y  L  *  H  V  Y  T  E  A  P  S  *  L  L  S  A  V  I  *  E  I  Q  G  S  L  *  R  V  H  Q  F  Y   : S  S  I  F  F  E  R  E  A  R  R  V  H  A  E  G  A  R  E  K  M  G  K  S  *  T  Y  G  Q  V  A  F  T  V  L  P  L  S  *  S  V  F  Y  C  S  K  V  T  P  C  T  *  *  S  W  S  D  V  L  P  *  F   : G  L  S  R  V  E  K  *  S  *  R  C  S  Y  S  A   : D  *  S  R  T  *  G  *  T  D  *  *  S  L  I  K  E  R  A  R  Y  I  C  *  N  W  D  G  G  N  G  V  L  *  K  *  L  *  R  C  N  A  *  R  Y  I  S  L  L  F  S  K  S  I  K  L  D  C  G  R  F  L  S  R  L  Y  V  E   : G  R  R  V  L  E  K  R  E  G  *  S  F  S  L  F  A  L  K  Q  R  D  K  T  S  G   : E  S  A  K  *  I  I  G  C  I  Y  Q  S  I  A  *  E  G  A  F  W  M  P  S  F  A  *  R  *  *   : G  R  G  F  I  S  N  V  Q  A  I  P  Q  D  P  *  R  F  G  T  S  C  K  Y  V  *  A   : A  C  H  C  *  R  H  G  I  G  A  T  G  R  R  L  S  K  *  Q   : G  *  K  F  Q  W  V  T  G  A   : G  L  C  *  E  G  Y  *  A  A  *  Q  I  Y  G  I  C  D  R  Q  F  C  K  *  L  S  L  S  Q   : G  F  E  R  G  I  *  G  L  L  *  Q  N  C  C  W  L  F  *  C  R  T  P  C  L  L  L  *  *  Y  P  *  E  G  R  E  *  E  T  Q  *  *  C  Y  *  G  D  I  R  *   : G  G  E  A  S  C  V  Y  Q  *  Q  G  P  F  C  *  V  L  Q  :  E  E  A  F  S  A  T  A  F  *  *  K  C  Q  *  *  P  *  K  A  Y  L  N  K  V  K  A  A  V  W  W  T  V  Y  V  K  D  G  G  N  G   </second_frame>
            <third_frame>   L  L  V  C  P  S  S  L  A  P  L  P  R  S  P  R  V  F  C  N  Q  T  A  :  F  V  F  M  T  T  S  Q  M  K  T  I  E  L  E  E  G  W  N  F  M  Q  K  G  I  T  K  L  K  K  I  L  E  G  H  P  D  S  F  S  S  E  E  Y  M  M  L  Y  T :   T  I  Y  N  M  C  T  Q  K  P  P  H  D  Y  S  Q  Q  L  Y  E  K  Y  K  E  A  F  E  E  Y  I  N  S  T  :  V  L  S  S  L  R  E  K  H  D  E  F  M  L  R  E  L  V  K  R  W  A  N  H  K  L  M  V  R  W  L  S  R  F  F  H  Y  L  D  R  Y  F  I  A  R  R  S  L  P  A  L  N  E  V  G  L  T  C  F  R  D  L  :  V  Y  Q  E  L  K  S  K  A  R  D  A  V  I  A  L  :  I  D  Q  E  R  E  G  E  Q  I  D  R  A  L  L  K  N  V  L  G  I  F  V  E  I  G  M  G  E  M  E  F  Y  E  N  D  F  E  D  A  M  L  K  D  T  S  A  Y  Y  S  R  K  A  S  N  W  I  V  E  D  S  C  P  D  Y  M  L  K  :  A  E  E  C  L  K  K  E  K  D  R  V  S  H  Y  L  H  S  S  S  E  T  K  L  L  E  :  K  V  Q  N  E  L  L  V  V  Y  T  N  Q  L  L  E  K  E  H  S  G  C  R  A  L  L  R  D  D  K  :  V  E  D  L  S  R  M  Y  R  L  F  H  R  I  P  K  G  L  E  P  V  A  N  M  F  K  Q  :  H  V  T  A  E  G  M  V  L  V  Q  Q  A  E  D  S  A  S  N  K  :  A  E  S  S  S  G  S  Q  E  Q  :  V  F  V  R  K  V  I  E  L  H  D  K  Y  M  A  Y  V  T  D  S  F  A  N  N  S  L  F  H  K  :  A  L  K  E  A  F  E  V  F  C  N  K  I  V  A  G  C  S  S  A  E  L  L  A  S  Y  C  D  N  I  L  K  K  G  G  S  E  K  L  S  D  D  A  I  E  E  T  L  D  K  :  V  V  K  L  L  A  Y  I  S  D  K  D  L  F  A  E  F  Y  R :   K  K  L  S  R  R  L  L  F  D  K  S  A  N  D  D  H  E  R  L  I  L  T  K  L  K  Q  Q  C  G  G  Q  F  T  S  K  M  E  G  M  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78791" stop="78723"/>
                    <exon start="78364" stop="78219"/>
                    <exon start="78107" stop="78008"/>
                    <exon start="77717" stop="77532"/>
                    <exon start="77407" stop="77360"/>
                    <exon start="77272" stop="77069"/>
                    <exon start="76971" stop="76894"/>
                    <exon start="76169" stop="76080"/>
                    <exon start="75971" stop="75891"/>
                    <exon start="75794" stop="75735"/>
                    <exon start="75375" stop="75346"/>
                    <exon start="75253" stop="75167"/>
                    <exon start="75071" stop="74922"/>
                    <exon start="74835" stop="74780"/>
                    <exon start="74684" stop="74561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVCPSSLAPLPRSPRVFCNQTAFVFMTTSQMKTIELEEGWNFMQKGITKLKKILEGHPDSFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYEKYKEAFEEYINSTVLSSLREKHDEFMLRELVKRWANHKLMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLVYQELKSKARDAVIALIDQEREGEQIDRALLKNVLGIFVEIGMGEMEFYENDFEDAMLKDTSAYYSRKASNWIVEDSCPDYMLKAEECLKKEKDRVSHYLHSSSETKLLEKVQNELLVVYTNQLLEKEHSGCRALLRDDKVEDLSRMYRLFHRIPKGLEPVANMFKQHVTAEGMVLVQQAEDSASNKAESSSGSQEQVFVRKVIELHDKYMAYVTDSFANNSLFHKALKEAFEVFCNKIVAGCSSAELLASYCDNILKKGGSEKLSDDAIEETLDKVVKLLAYISDKDLFAEFYRKKLSRRLLFDKSANDDHERLILTKLKQQCGGQFTSKMEGMV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="78793" e_stop="78723"/>
            <exon e_start="78364" e_stop="78219"/>
            <exon e_start="78107" e_stop="78008"/>
            <exon e_start="77717" e_stop="77532"/>
            <exon e_start="77407" e_stop="77360"/>
            <exon e_start="77272" e_stop="77069"/>
            <exon e_start="76971" e_stop="76894"/>
            <exon e_start="76169" e_stop="75976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.880" e_score="0.981"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.285" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="78793" e_stop="78723" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.880">
            <gDNA_intron_boundary i_start="78722" i_stop="78365" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78364" e_stop="78219" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78218" i_stop="78108" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78107" e_stop="78008" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.285" acc_prob="0.996">
            <gDNA_intron_boundary i_start="78007" i_stop="77718" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77717" e_stop="77532" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77531" i_stop="77408" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77407" e_stop="77360" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.931">
            <gDNA_intron_boundary i_start="77359" i_stop="77273" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77272" e_stop="77069" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77068" i_stop="76972" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76971" e_stop="76894" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.862" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76893" i_stop="76170" i_length="724"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76169" e_stop="75976" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78793" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78774" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78755" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78748" stop="78723"/>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78364" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78344" stop="78219"/>
              <exon start="78107" stop="78008"/>
              <exon start="77717" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77595" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77592" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="76096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77571" stop="77532"/>
              <exon start="77407" stop="77360"/>
              <exon start="77272" stop="77069"/>
              <exon start="76971" stop="76894"/>
              <exon start="76169" stop="75976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCTCGTCTGCCCTAGCTCGCTCGCTCCTCTTCCGCGATCTCCTCGTGTTTTCTGCAACCAAACTGCT : TTTGTGTTTATGACGACTAGCCAGATGAAGACAATCGAGCTGGAGGAAGGATGGAACTTCATGCAGAAGGGAATCACAAAATTAAAGAAAATCTTAGAAGGCCATCCAGATTCATTCAGCTCCGAAGAGTACATGATGCTCTACAC : AACTATCTATAACATGTGTACACAGAAGCCCCCTCATGATTACTCTCAGCAGTTATATGAGAAATACAAGGAAGCCTTTGAAGAGTACATCAATTCTACA : GTTCTATCTTCTTTGAGAGAGAAGCACGACGAGTTCATGCTGAGGGAGCTCGTGAAAAGATGGGCAAATCATAAACTTATGGTCAGGTGGCTTTCACGGTTCTTCCATTATCTTGATCGGTATTTTATTGCTCGAAGGTCACTCCCTGCACTTAATGAAGTTGGTCTGACGTGCTTCCGTGATTTG : GTTTATCAAGAGTTGAAAAGTAAAGCTAGAGATGCAGTTATAGCGCTG : ATTGATCAAGAACGTGAGGGTGAACAGATTGATAGAGCCTTATTAAAGAACGTGCTAGGTATATTTGTTGAAATTGGGATGGGGGAAATGGAGTTCTATGAAAATGACTTTGAAGATGCAATGCTTAAAGATACATCAGCTTATTATTCTCGAAAAGCATCAAACTGGATTGTGGAAGATTCTTGTCCAGATTATATGTTGAAG : GCAGAAGAGTGCTTGAAAAAAGAGAAGGATAGAGTTTCTCATTATTTGCACTCAAGCAGCGAGACAAAACTTCTGGAG : AAAGTGCAAAATGAATTATTGGTTGTATATACCAATCAATTGCTTGAGAAGGAGCATTCTGGATGCCGAGCTTTGCTTAGAGATGATAAGGTATTAATTCCTTGCATATTAGGTGTCTACTAGTCAATATGTATTTGACTTCTTATGTGAGTATCTTGTTTTCCCCCCTTCTTTTCATCCATCCCCTTTTCATG</gDNA_template>
            <first_frame> F  F  S  S  A  L  A  R  S  L  L  F  R  D  L  L  V  F  S  A  T  K  L  L :   L  C  L  *  R  L  A  R  *  R  Q  S  S  W  R  K  D  G  T  S  C  R  R  E  S  Q  N  *  R  K  S  *  K  A  I  Q  I  H  S  A  P  K  S  T  *  C  S  T   : Q  L  S  I  T  C  V  H  R  S  P  L  M  I  T  L  S  S  Y  M  R  N  T  R  K  P  L  K  S  T  S  I  L  Q :   F  Y  L  L  *  E  R  S  T  T  S  S  C  *  G  S  S  *  K  D  G  Q  I  I  N  L  W  S  G  G  F  H  G  S  S  I  I  L  I  G  I  L  L  L  E  G  H  S  L  H  L  M  K  L  V  *  R  A  S  V  I  W :   F  I  K  S  *  K  V  K  L  E  M  Q  L  *  R  * :   L  I  K  N  V  R  V  N  R  L  I  E  P  Y  *  R  T  C  *  V  Y  L  L  K  L  G  W  G  K  W  S  S  M  K  M  T  L  K  M  Q  C  L  K  I  H  Q  L  I  I  L  E  K  H  Q  T  G  L  W  K  I  L  V  Q  I  I  C  *  R :   Q  K  S  A  *  K  K  R  R  I  E  F  L  I  I  C  T  Q  A  A  R  Q  N  F  W  R :   K  C  K  M  N  Y  W  L  Y  I  P  I  N  C  L  R  R  S  I  L  D  A  E  L  C  L  E  M  I  R  Y  *  F  L  A  Y  *  V  S  T  S  Q  Y  V  F  D  F  L  C  E  Y  L  V  F  P  P  S  F  H  P  S  P  F  H  </first_frame>
            <second_frame>  S  S  R  L  P  *  L  A  R  S  S  S  A  I  S  S  C  F  L  Q  P  N  C   : F  C  V  Y  D  D  *  P  D  E  D  N  R  A  G  G  R  M  E  L  H  A  E  G  N  H  K  I  K  E  N  L  R  R  P  S  R  F  I  Q  L  R  R  V  H  D  A  L  H  :  N  Y  L  *  H  V  Y  T  E  A  P  S  *  L  L  S  A  V  I  *  E  I  Q  G  S  L  *  R  V  H  Q  F  Y   : S  S  I  F  F  E  R  E  A  R  R  V  H  A  E  G  A  R  E  K  M  G  K  S  *  T  Y  G  Q  V  A  F  T  V  L  P  L  S  *  S  V  F  Y  C  S  K  V  T  P  C  T  *  *  S  W  S  D  V  L  P  *  F   : G  L  S  R  V  E  K  *  S  *  R  C  S  Y  S  A   : D  *  S  R  T  *  G  *  T  D  *  *  S  L  I  K  E  R  A  R  Y  I  C  *  N  W  D  G  G  N  G  V  L  *  K  *  L  *  R  C  N  A  *  R  Y  I  S  L  L  F  S  K  S  I  K  L  D  C  G  R  F  L  S  R  L  Y  V  E   : G  R  R  V  L  E  K  R  E  G  *  S  F  S  L  F  A  L  K  Q  R  D  K  T  S  G   : E  S  A  K  *  I  I  G  C  I  Y  Q  S  I  A  *  E  G  A  F  W  M  P  S  F  A  *  R  *  *  G  I  N  S  L  H  I  R  C  L  L  V  N  M  Y  L  T  S  Y  V  S  I  L  F  S  P  L  L  F  I  H  P  L  F  M </second_frame>
            <third_frame>   L  L  V  C  P  S  S  L  A  P  L  P  R  S  P  R  V  F  C  N  Q  T  A  :  F  V  F  M  T  T  S  Q  M  K  T  I  E  L  E  E  G  W  N  F  M  Q  K  G  I  T  K  L  K  K  I  L  E  G  H  P  D  S  F  S  S  E  E  Y  M  M  L  Y  T :   T  I  Y  N  M  C  T  Q  K  P  P  H  D  Y  S  Q  Q  L  Y  E  K  Y  K  E  A  F  E  E  Y  I  N  S  T  :  V  L  S  S  L  R  E  K  H  D  E  F  M  L  R  E  L  V  K  R  W  A  N  H  K  L  M  V  R  W  L  S  R  F  F  H  Y  L  D  R  Y  F  I  A  R  R  S  L  P  A  L  N  E  V  G  L  T  C  F  R  D  L  :  V  Y  Q  E  L  K  S  K  A  R  D  A  V  I  A  L  :  I  D  Q  E  R  E  G  E  Q  I  D  R  A  L  L  K  N  V  L  G  I  F  V  E  I  G  M  G  E  M  E  F  Y  E  N  D  F  E  D  A  M  L  K  D  T  S  A  Y  Y  S  R  K  A  S  N  W  I  V  E  D  S  C  P  D  Y  M  L  K  :  A  E  E  C  L  K  K  E  K  D  R  V  S  H  Y  L  H  S  S  S  E  T  K  L  L  E  :  K  V  Q  N  E  L  L  V  V  Y  T  N  Q  L  L  E  K  E  H  S  G  C  R  A  L  L  R  D  D  K  V  L  I  P  C  I  L  G  V  Y  *  S  I  C  I  *  L  L  M  *  V  S  C  F  P  P  F  F  S  S  I  P  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78791" stop="78723"/>
                    <exon start="78364" stop="78219"/>
                    <exon start="78107" stop="78008"/>
                    <exon start="77717" stop="77532"/>
                    <exon start="77407" stop="77360"/>
                    <exon start="77272" stop="77069"/>
                    <exon start="76971" stop="76894"/>
                    <exon start="76169" stop="76047"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVCPSSLAPLPRSPRVFCNQTAFVFMTTSQMKTIELEEGWNFMQKGITKLKKILEGHPDSFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYEKYKEAFEEYINSTVLSSLREKHDEFMLRELVKRWANHKLMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLVYQELKSKARDAVIALIDQEREGEQIDRALLKNVLGIFVEIGMGEMEFYENDFEDAMLKDTSAYYSRKASNWIVEDSCPDYMLKAEECLKKEKDRVSHYLHSSSETKLLEKVQNELLVVYTNQLLEKEHSGCRALLRDDKVLIPCILGVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="85084" PGL_stop="89675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85084" e_stop="85213"/>
            <exon e_start="85308" e_stop="85518"/>
            <exon e_start="85616" e_stop="85740"/>
            <exon e_start="89563" e_stop="89675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.969"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.972"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.936"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="85084" e_stop="85213" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85214" i_stop="85307" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="85308" e_stop="85518" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="85519" i_stop="85615" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="85616" e_stop="85740" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85741" i_stop="89562" i_length="3822"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="89563" e_stop="89675" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85084" stop="85213"/>
              <exon start="85308" stop="85518"/>
              <exon start="85616" stop="85740"/>
              <exon start="89563" stop="89675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCATTTTCTGTAATTCTCTTTGGATCTGATTTACGGGGAACATGGTCGAAACCAGACGAGGCTCCTCTTCTTCCAAACGACCTCTCTCTTCTCCTTCCTCTCCTCTCCCTAATGGCAAGCGCTCCAAG : GCTGTGGAGGCGTTGTCATCAACTAATGATACCATAGGGCAGAAAACACAGGGTGCTGTGAATGAATCAGGACAGGAATCTGCTGAGCAAGAGGTACGATCGGCTGATCTGTCTGGTGCTAGTGTTTTGAAGTCATCGGATGCTTCTCTGCCACTAAAATCACCGGAAAATCAAGTGAAAGGCGAGCCTTTGGTATCACCCATCACTTTAG : GTCATTCGGTGATTAATGCTGAGAAGGTAAAGTTGAATGGATCGACATTGAATAGGGGTAAGAAGCGGCAGCTGAAATCTAATGTTGGGGCTGCATGGGGAAAGCTTATTTCCCAGTGCTCTCAA : AATCCTCACGTTGTCATGCATCATCCCACATATTCTGTTGGTCAAGGTCGTCAATGTGACTTGTGGATAGGAGACCCTTCTGTTAGCAAATCTTTATGTAATCTGAAGCACAT</gDNA_template>
            <first_frame> I  H  F  L  *  F  S  L  D  L  I  Y  G  E  H  G  R  N  Q  T  R  L  L  F  F  Q  T  T  S  L  F  S  F  L  S  S  P  *  W  Q  A  L  Q   : G  C  G  G  V  V  I  N  *  *  Y  H  R  A  E  N  T  G  C  C  E  *  I  R  T  G  I  C  *  A  R  G  T  I  G  *  S  V  W  C  *  C  F  E  V  I  G  C  F  S  A  T  K  I  T  G  K  S  S  E  R  R  A  F  G  I  T  H  H  F  R :   S  F  G  D  *  C  *  E  G  K  V  E  W  I  D  I  E  *  G  *  E  A  A  A  E  I  *  C  W  G  C  M  G  K  A  Y  F  P  V  L  S   : K  S  S  R  C  H  A  S  S  H  I  F  C  W  S  R  S  S  M  *  L  V  D  R  R  P  F  C  *  Q  I  F  M  *  S  E  A  H </first_frame>
            <second_frame>  S  I  F  C  N  S  L  W  I  *  F  T  G  N  M  V  E  T  R  R  G  S  S  S  S  K  R  P  L  S  S  P  S  S  P  L  P  N  G  K  R  S  K  :  A  V  E  A  L  S  S  T  N  D  T  I  G  Q  K  T  Q  G  A  V  N  E  S  G  Q  E  S  A  E  Q  E  V  R  S  A  D  L  S  G  A  S  V  L  K  S  S  D  A  S  L  P  L  K  S  P  E  N  Q  V  K  G  E  P  L  V  S  P  I  T  L   : G  H  S  V  I  N  A  E  K  V  K  L  N  G  S  T  L  N  R  G  K  K  R  Q  L  K  S  N  V  G  A  A  W  G  K  L  I  S  Q  C  S  Q  :  N  P  H  V  V  M  H  H  P  T  Y  S  V  G  Q  G  R  Q  C  D  L  W  I  G  D  P  S  V  S  K  S  L  C  N  L  K  H   </second_frame>
            <third_frame>   P  F  S  V  I  L  F  G  S  D  L  R  G  T  W  S  K  P  D  E  A  P  L  L  P  N  D  L  S  L  L  L  P  L  L  S  L  M  A  S  A  P  R :   L  W  R  R  C  H  Q  L  M  I  P  *  G  R  K  H  R  V  L  *  M  N  Q  D  R  N  L  L  S  K  R  Y  D  R  L  I  C  L  V  L  V  F  *  S  H  R  M  L  L  C  H  *  N  H  R  K  I  K  *  K  A  S  L  W  Y  H  P  S  L  *  :  V  I  R  *  L  M  L  R  R  *  S  *  M  D  R  H  *  I  G  V  R  S  G  S  *  N  L  M  L  G  L  H  G  E  S  L  F  P  S  A  L  K :   I  L  T  L  S  C  I  I  P  H  I  L  L  V  K  V  V  N  V  T  C  G  *  E  T  L  L  L  A  N  L  Y  V  I  *  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85115" stop="85213"/>
                    <exon start="85308" stop="85518"/>
                    <exon start="85616" stop="85740"/>
                    <exon start="89563" stop="89673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTGNMVETRRGSSSSKRPLSSPSSPLPNGKRSKAVEALSSTNDTIGQKTQGAVNESGQESAEQEVRSADLSGASVLKSSDASLPLKSPENQVKGEPLVSPITLGHSVINAEKVKLNGSTLNRGKKRQLKSNVGAAWGKLISQCSQNPHVVMHHPTYSVGQGRQCDLWIGDPSVSKSLCNLKH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="90618" PGL_stop="95494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90618" e_stop="90750"/>
            <exon e_start="91502" e_stop="91623"/>
            <exon e_start="91719" e_stop="91810"/>
            <exon e_start="93874" e_stop="94096"/>
            <exon e_start="94349" e_stop="94412"/>
            <exon e_start="95375" e_stop="95494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.309" acc_prob="0.987" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.984"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90618" e_stop="90750" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.667">
            <gDNA_intron_boundary i_start="90751" i_stop="91501" i_length="751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91502" e_stop="91623" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.996">
            <gDNA_intron_boundary i_start="91624" i_stop="91718" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91719" e_stop="91810" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.785" acc_prob="0.959">
            <gDNA_intron_boundary i_start="91811" i_stop="93873" i_length="2063"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="93874" e_stop="94096" e_length="223"/>
          </exon>
          <intron i_serial="4" don_prob="0.309" acc_prob="0.987">
            <gDNA_intron_boundary i_start="94097" i_stop="94348" i_length="252"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="94349" e_stop="94412" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94413" i_stop="95374" i_length="962"/>
          </intron>
          <exon e_serial="6" e_score="0.950">
            <gDNA_exon_boundary e_start="95375" e_stop="95494" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90618" stop="90750"/>
              <exon start="91502" stop="91623"/>
              <exon start="91719" stop="91810"/>
              <exon start="93874" stop="94083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91505" stop="91623"/>
              <exon start="91719" stop="91810"/>
              <exon start="93874" stop="94096"/>
              <exon start="94349" stop="94412"/>
              <exon start="95375" stop="95494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTACTCAGAGATCTTGACCCGCCAATTTTGACATCAACCAGGCGCCAAGCTTTTAAAGATGCATTACAACAAGGAATACTTGATTCAAAAAGTATTGAGGTCTCGTTTGAAAATTTTCCGTACTATTTGAG : TGAAACCACGAAGAATGTTCTGATTTCTTCCACTTACGTTCATTTGAAGTGTCACAAATTCATAAAATATGCACCTGATCTCCCCACGTTGTGCCCTAGGATTTTGTTATCAGGTCCAGCAG : GTTCAGAAATCTATCAGGAGACATTGGCCAAGGCTCTTGCAAAATACTTTGGTGTCAGGCTACTGATAGTTGATTCTCTTTTACTGCCTGGT : GGGTCAATTGCCAAAGACATTGACTCTGTGAAGGAAAGTTCAAAGCCTGAGAGAGCAAGTGTCTTTGCTAAACGTGCTGCCCAGGTGGCTGCACTACACCTTAATAAGAAGCCAGCTTCAAGTGTTGAGGCTGATATAACTGGTGGTTCTACAGTAAGTTCTCATGCTCAGCCTAAGCAGGAGGCATCTACTGCATCATCCAAAAACTACACTTTTAAGAAAG : GTGACAGAGTGAAGTATGTTGGTCCGTTACAGTCAGGCTTTTCTCCCTTGCAAGCACCTTTGAG : GGGTCCAACATATGGTTACAGGGGCAAAGTGGTTCTTGCATTTGAAGATAATGAGTCCTCTAAGATTGGGATCAGGTTTGATAGATCAATTCCAGAGGGCAATGATCTTGGTGGTCGCTG</gDNA_template>
            <first_frame> N  Y  S  E  I  L  T  R  Q  F  *  H  Q  P  G  A  K  L  L  K  M  H  Y  N  K  E  Y  L  I  Q  K  V  L  R  S  R  L  K  I  F  R  T  I  *   : V  K  P  R  R  M  F  *  F  L  P  L  T  F  I  *  S  V  T  N  S  *  N  M  H  L  I  S  P  R  C  A  L  G  F  C  Y  Q  V  Q  Q  :  V  Q  K  S  I  R  R  H  W  P  R  L  L  Q  N  T  L  V  S  G  Y  *  *  L  I  L  F  Y  C  L  V :   G  Q  L  P  K  T  L  T  L  *  R  K  V  Q  S  L  R  E  Q  V  S  L  L  N  V  L  P  R  W  L  H  Y  T  L  I  R  S  Q  L  Q  V  L  R  L  I  *  L  V  V  L  Q  *  V  L  M  L  S  L  S  R  R  H  L  L  H  H  P  K  T  T  L  L  R  K  :  V  T  E  *  S  M  L  V  R  Y  S  Q  A  F  L  P  C  K  H  L  *   : G  V  Q  H  M  V  T  G  A  K  W  F  L  H  L  K  I  M  S  P  L  R  L  G  S  G  L  I  D  Q  F  Q  R  A  M  I  L  V  V  A  </first_frame>
            <second_frame>  I  T  Q  R  S  *  P  A  N  F  D  I  N  Q  A  P  S  F  *  R  C  I  T  T  R  N  T  *  F  K  K  Y  *  G  L  V  *  K  F  S  V  L  F  E  :  *  N  H  E  E  C  S  D  F  F  H  L  R  S  F  E  V  S  Q  I  H  K  I  C  T  *  S  P  H  V  V  P  *  D  F  V  I  R  S  S  R :   F  R  N  L  S  G  D  I  G  Q  G  S  C  K  I  L  W  C  Q  A  T  D  S  *  F  S  F  T  A  W   : W  V  N  C  Q  R  H  *  L  C  E  G  K  F  K  A  *  E  S  K  C  L  C  *  T  C  C  P  G  G  C  T  T  P  *  *  E  A  S  F  K  C  *  G  *  Y  N  W  W  F  Y  S  K  F  S  C  S  A  *  A  G  G  I  Y  C  I  I  Q  K  L  H  F  *  E  R :   *  Q  S  E  V  C  W  S  V  T  V  R  L  F  S  L  A  S  T  F  E  :  G  S  N  I  W  L  Q  G  Q  S  G  S  C  I  *  R  *  *  V  L  *  D  W  D  Q  V  *  *  I  N  S  R  G  Q  *  S  W  W  S  L </second_frame>
            <third_frame>   L  L  R  D  L  D  P  P  I  L  T  S  T  R  R  Q  A  F  K  D  A  L  Q  Q  G  I  L  D  S  K  S  I  E  V  S  F  E  N  F  P  Y  Y  L  S :   E  T  T  K  N  V  L  I  S  S  T  Y  V  H  L  K  C  H  K  F  I  K  Y  A  P  D  L  P  T  L  C  P  R  I  L  L  S  G  P  A   : G  S  E  I  Y  Q  E  T  L  A  K  A  L  A  K  Y  F  G  V  R  L  L  I  V  D  S  L  L  L  P  G  :  G  S  I  A  K  D  I  D  S  V  K  E  S  S  K  P  E  R  A  S  V  F  A  K  R  A  A  Q  V  A  A  L  H  L  N  K  K  P  A  S  S  V  E  A  D  I  T  G  G  S  T  V  S  S  H  A  Q  P  K  Q  E  A  S  T  A  S  S  K  N  Y  T  F  K  K   : G  D  R  V  K  Y  V  G  P  L  Q  S  G  F  S  P  L  Q  A  P  L  R :   G  P  T  Y  G  Y  R  G  K  V  V  L  A  F  E  D  N  E  S  S  K  I  G  I  R  F  D  R  S  I  P  E  G  N  D  L  G  G  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90620" stop="90750"/>
                    <exon start="91502" stop="91623"/>
                    <exon start="91719" stop="91810"/>
                    <exon start="93874" stop="94096"/>
                    <exon start="94349" stop="94412"/>
                    <exon start="95375" stop="95492"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRDLDPPILTSTRRQAFKDALQQGILDSKSIEVSFENFPYYLSETTKNVLISSTYVHLKCHKFIKYAPDLPTLCPRILLSGPAGSEIYQETLAKALAKYFGVRLLIVDSLLLPGGSIAKDIDSVKESSKPERASVFAKRAAQVAALHLNKKPASSVEADITGGSTVSSHAQPKQEASTASSKNYTFKKGDRVKYVGPLQSGFSPLQAPLRGPTYGYRGKVVLAFEDNESSKIGIRFDRSIPEGNDLGGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="95941" PGL_stop="99144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95941" e_stop="95957"/>
            <exon e_start="96025" e_stop="96117"/>
            <exon e_start="96648" e_stop="96749"/>
            <exon e_start="96830" e_stop="96919"/>
            <exon e_start="97329" e_stop="97404"/>
            <exon e_start="97486" e_stop="97582"/>
            <exon e_start="97741" e_stop="97810"/>
            <exon e_start="97905" e_stop="98084"/>
            <exon e_start="98231" e_stop="98353"/>
            <exon e_start="98440" e_stop="98523"/>
            <exon e_start="98769" e_stop="98953"/>
            <exon e_start="99088" e_stop="99144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.954" e_score="0.935"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="0.978"/>
          <exon-intron don_prob="0.268" acc_prob="0.998" e_score="0.961"/>
          <exon-intron don_prob="0.987" acc_prob="0.604" e_score="0.948"/>
          <exon-intron don_prob="0.896" acc_prob="0.980" e_score="0.929"/>
          <exon-intron don_prob="0.978" acc_prob="0.635" e_score="0.989"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="0.984"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95941" e_stop="95957" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.874">
            <gDNA_intron_boundary i_start="95958" i_stop="96024" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="96025" e_stop="96117" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.954">
            <gDNA_intron_boundary i_start="96118" i_stop="96647" i_length="530"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="96648" e_stop="96749" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96750" i_stop="96829" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="96830" e_stop="96919" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="96920" i_stop="97328" i_length="409"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="97329" e_stop="97404" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.268" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97405" i_stop="97485" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="97486" e_stop="97582" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.604">
            <gDNA_intron_boundary i_start="97583" i_stop="97740" i_length="158"/>
          </intron>
          <exon e_serial="7" e_score="0.929">
            <gDNA_exon_boundary e_start="97741" e_stop="97810" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.896" acc_prob="0.980">
            <gDNA_intron_boundary i_start="97811" i_stop="97904" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="97905" e_stop="98084" e_length="180"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.635">
            <gDNA_intron_boundary i_start="98085" i_stop="98230" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="0.984">
            <gDNA_exon_boundary e_start="98231" e_stop="98353" e_length="123"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="98354" i_stop="98439" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="0.988">
            <gDNA_exon_boundary e_start="98440" e_stop="98523" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98524" i_stop="98768" i_length="245"/>
          </intron>
          <exon e_serial="11" e_score="0.989">
            <gDNA_exon_boundary e_start="98769" e_stop="98953" e_length="185"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98954" i_stop="99087" i_length="134"/>
          </intron>
          <exon e_serial="12" e_score="0.982">
            <gDNA_exon_boundary e_start="99088" e_stop="99144" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95941" stop="95957"/>
              <exon start="96025" stop="96117"/>
              <exon start="96648" stop="96749"/>
              <exon start="96830" stop="96919"/>
              <exon start="97329" stop="97404"/>
              <exon start="97486" stop="97541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96715" stop="96749"/>
              <exon start="96830" stop="96919"/>
              <exon start="97329" stop="97404"/>
              <exon start="97486" stop="97582"/>
              <exon start="97741" stop="97810"/>
              <exon start="97905" stop="98084"/>
              <exon start="98231" stop="98311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97566" stop="97582"/>
              <exon start="97741" stop="97810"/>
              <exon start="97905" stop="98084"/>
              <exon start="98231" stop="98353"/>
              <exon start="98440" stop="98523"/>
              <exon start="98769" stop="98953"/>
              <exon start="99088" stop="99144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97792" stop="97810"/>
              <exon start="97905" stop="98084"/>
              <exon start="98231" stop="98353"/>
              <exon start="98440" stop="98493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98454" stop="98523"/>
              <exon start="98769" stop="98851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGCCGAAAGGAGAAA : CATTCCATATATGCTTTGCAGTCACATCCCGGGGGACTACTGTTTACAAAGTTTGGAAGTAACCAGACAGCATTGCTTGACCTTGCTTTTCCA : GATAGTTTTGGTAGGTTGCATGATAGAAGCAAAGAAACTCCTAAAACGATGAAGCAGCTCACCCGTCTTTTCCCCAACAAAGTTACCATACAACTACCTCAG : GATGAAGCATTATTATCTGACTGGAAACAACAGCTGGAACGGGATATTGGAACTTTGAAATCTCAGTCAAACATTGTCAGCATTCGCAAT : GTTTTGAACCGTATAGGAATTGATTGCCCTGACCTCGAAACTTTATGCATAAAAGATCAAGCGTTAACAAGTGAGA : GTGTGGAAAAGATAATAGGCTGGGCCTTGAGCCATCACTTTATGCACAAAACTGAATCGCCAGTAGAAGAGGTCAAGCTGGTTATCTCCAGTGCAAG : CATTTCTTATGGGGTCAATATTTTCCAAGGGATCCACAATGAAACTAAGAGTCTAAAAAAATCTTTAAAG : GATGTGGTTACTGAAAATGACTTTGAAAAGAGACTACTTGCGGACGTAATTCCGCCTAGCGATATTGGTGTTACTTTTTGTGACATTGGAGCACTGGAAAATGTCAAGGATACTTTGAAAGAATTGGTGATGCTGCCACTTCAAAGACCTGAATTGTTTTGTAAAGGACAGCTGACCAAG : CCTTGCAAGGGAATACTGCTTTTTGGCCCCCCTGGTACTGGTAAAACAATGCTTGCAAAAGCTGTTGCAACTGAGGCTGGTGCAAACTTTATTAATATATCAATGTCAAGCATTACTTCAAAG : TGGTTCGGTGAAGGAGAGAAGTATGTCAAAGCAGTCTTCTCATTAGCTAGTAAAATAGCGCCTAGTGTCGTTTTTGTTGACGAG : GTGGATAGCATGCTAGGGAGACGAGAAAATCCTGGTGAGCATGAAGCAATGCGGAAAATGAAGAATGAATTCATGGTGAATTGGGATGGCTTGCGTACAAAGGACAAGGAGCGAGTTCTTGTACTTGCTGCAACTAATAGACCATTCGACCTTGATGAAGCAGTTATTAGGAGACTTCCACGGAG : GTTGATGGTAAACTTGCCAGATGCTCCGAACAGGGAGAAAATTTTGAGAGTGATATT</gDNA_template>
            <first_frame> T  A  E  R  R  N :   I  P  Y  M  L  C  S  H  I  P  G  D  Y  C  L  Q  S  L  E  V  T  R  Q  H  C  L  T  L  L  F  Q :   I  V  L  V  G  C  M  I  E  A  K  K  L  L  K  R  *  S  S  S  P  V  F  S  P  T  K  L  P  Y  N  Y  L  R :   M  K  H  Y  Y  L  T  G  N  N  S  W  N  G  I  L  E  L  *  N  L  S  Q  T  L  S  A  F  A  M :   F  *  T  V  *  E  L  I  A  L  T  S  K  L  Y  A  *  K  I  K  R  *  Q  V  R  :  V  W  K  R  *  *  A  G  P  *  A  I  T  L  C  T  K  L  N  R  Q  *  K  R  S  S  W  L  S  P  V  Q   : A  F  L  M  G  S  I  F  S  K  G  S  T  M  K  L  R  V  *  K  N  L  *  R :   M  W  L  L  K  M  T  L  K  R  D  Y  L  R  T  *  F  R  L  A  I  L  V  L  L  F  V  T  L  E  H  W  K  M  S  R  I  L  *  K  N  W  *  C  C  H  F  K  D  L  N  C  F  V  K  D  S  *  P  S :   L  A  R  E  Y  C  F  L  A  P  L  V  L  V  K  Q  C  L  Q  K  L  L  Q  L  R  L  V  Q  T  L  L  I  Y  Q  C  Q  A  L  L  Q  S :   G  S  V  K  E  R  S  M  S  K  Q  S  S  H  *  L  V  K  *  R  L  V  S  F  L  L  T  R :   W  I  A  C  *  G  D  E  K  I  L  V  S  M  K  Q  C  G  K  *  R  M  N  S  W  *  I  G  M  A  C  V  Q  R  T  R  S  E  F  L  Y  L  L  Q  L  I  D  H  S  T  L  M  K  Q  L  L  G  D  F  H  G   : G  *  W  *  T  C  Q  M  L  R  T  G  R  K  F  *  E  *  Y  </first_frame>
            <second_frame>  Q  P  K  G  E   : T  F  H  I  C  F  A  V  T  S  R  G  T  T  V  Y  K  V  W  K  *  P  D  S  I  A  *  P  C  F  S   : R  *  F  W  *  V  A  *  *  K  Q  R  N  S  *  N  D  E  A  A  H  P  S  F  P  Q  Q  S  Y  H  T  T  T  S   : G  *  S  I  I  I  *  L  E  T  T  A  G  T  G  Y  W  N  F  E  I  S  V  K  H  C  Q  H  S  Q   : C  F  E  P  Y  R  N  *  L  P  *  P  R  N  F  M  H  K  R  S  S  V  N  K  *  E :   C  G  K  D  N  R  L  G  L  E  P  S  L  Y  A  Q  N  *  I  A  S  R  R  G  Q  A  G  Y  L  Q  C  K  :  H  F  L  W  G  Q  Y  F  P  R  D  P  Q  *  N  *  E  S  K  K  I  F  K   : G  C  G  Y  *  K  *  L  *  K  E  T  T  C  G  R  N  S  A  *  R  Y  W  C  Y  F  L  *  H  W  S  T  G  K  C  Q  G  Y  F  E  R  I  G  D  A  A  T  S  K  T  *  I  V  L  *  R  T  A  D  Q   : A  L  Q  G  N  T  A  F  W  P  P  W  Y  W  *  N  N  A  C  K  S  C  C  N  *  G  W  C  K  L  Y  *  Y  I  N  V  K  H  Y  F  K   : V  V  R  *  R  R  E  V  C  Q  S  S  L  L  I  S  *  *  N  S  A  *  C  R  F  C  *  R   : G  G  *  H  A  R  E  T  R  K  S  W  *  A  *  S  N  A  E  N  E  E  *  I  H  G  E  L  G  W  L  A  Y  K  G  Q  G  A  S  S  C  T  C  C  N  *  *  T  I  R  P  *  *  S  S  Y  *  E  T  S  T  E  :  V  D  G  K  L  A  R  C  S  E  Q  G  E  N  F  E  S  D  I </second_frame>
            <third_frame>   S  R  K  E  K  :  H  S  I  Y  A  L  Q  S  H  P  G  G  L  L  F  T  K  F  G  S  N  Q  T  A  L  L  D  L  A  F  P  :  D  S  F  G  R  L  H  D  R  S  K  E  T  P  K  T  M  K  Q  L  T  R  L  F  P  N  K  V  T  I  Q  L  P  Q  :  D  E  A  L  L  S  D  W  K  Q  Q  L  E  R  D  I  G  T  L  K  S  Q  S  N  I  V  S  I  R  N  :  V  L  N  R  I  G  I  D  C  P  D  L  E  T  L  C  I  K  D  Q  A  L  T  S  E   : S  V  E  K  I  I  G  W  A  L  S  H  H  F  M  H  K  T  E  S  P  V  E  E  V  K  L  V  I  S  S  A  S :   I  S  Y  G  V  N  I  F  Q  G  I  H  N  E  T  K  S  L  K  K  S  L  K  :  D  V  V  T  E  N  D  F  E  K  R  L  L  A  D  V  I  P  P  S  D  I  G  V  T  F  C  D  I  G  A  L  E  N  V  K  D  T  L  K  E  L  V  M  L  P  L  Q  R  P  E  L  F  C  K  G  Q  L  T  K  :  P  C  K  G  I  L  L  F  G  P  P  G  T  G  K  T  M  L  A  K  A  V  A  T  E  A  G  A  N  F  I  N  I  S  M  S  S  I  T  S  K  :  W  F  G  E  G  E  K  Y  V  K  A  V  F  S  L  A  S  K  I  A  P  S  V  V  F  V  D  E  :  V  D  S  M  L  G  R  R  E  N  P  G  E  H  E  A  M  R  K  M  K  N  E  F  M  V  N  W  D  G  L  R  T  K  D  K  E  R  V  L  V  L  A  A  T  N  R  P  F  D  L  D  E  A  V  I  R  R  L  P  R  R :   L  M  V  N  L  P  D  A  P  N  R  E  K  I  L  R  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0066F23.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95943" stop="95957"/>
                    <exon start="96025" stop="96117"/>
                    <exon start="96648" stop="96749"/>
                    <exon start="96830" stop="96919"/>
                    <exon start="97329" stop="97404"/>
                    <exon start="97486" stop="97582"/>
                    <exon start="97741" stop="97810"/>
                    <exon start="97905" stop="98084"/>
                    <exon start="98231" stop="98353"/>
                    <exon start="98440" stop="98523"/>
                    <exon start="98769" stop="98953"/>
                    <exon start="99088" stop="99142"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKEKHSIYALQSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRSKETPKTMKQLTRLFPNKVTIQLPQDEALLSDWKQQLERDIGTLKSQSNIVSIRNVLNRIGIDCPDLETLCIKDQALTSESVEKIIGWALSHHFMHKTESPVEEVKLVISSASISYGVNIFQGIHNETKSLKKSLKDVVTENDFEKRLLADVIPPSDIGVTFCDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 240 chains have been computed
$ 
$ memory statistics:
$ 283680 bytes spliced alignments in total
$ 130 spliced alignments have been stored
$ 2182 bytes was the average size of a spliced alignment
$ 29976 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1998 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 267 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:29:07
-->
