<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:19:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719987" ref_strand="+" ref_description="SGN-E719987 [FC09CA01]">
      <seq>gtcgaaaatttgctcacatgaacattcagttttcgcctatcaaactgtaattccatgtggttttgcttattactactgatttacggtcaaaagaatcaatcttttgaggtgggatgactaattgttgcggttagtggaacagagatttgggttgttagtgttcagctatgaaatggttcatccttttatgttagggttcatcttaattaacacgcgaagcaagcagtgaaaaatgaagacggaaaaagaggaagagaggcatatggatcctttgtttcctagattacatataaatgatacagacaaaggaggtccaagagcaccccctagaaacaaaatggctctttgtgaacagtcgtcatccagatcgcctcaaagtttcacctctagttctactcctgcaaccatgcaaatgctacctaatagtggaaactctatttctgcagcatcttctactcttggagcatagtggaagtcaagctggagatcaagcaaagtaccaaaagagagaacattgtgttaaactacctgctcctcatctgtcaactatagagacaactgtggtgcatgaaactccaactccaggacatagcaagctaaatattagtaaatcatttgtatcaagtgctccagaaaacagatgtggtctagtaggtgacttgaatagatgtagtgattctaattctgaatctgatgaagactcttggattttacacaaaaggaaggctgcagaagatgttactaatgcgaagcatgaagatgcctcgactaaaagatgtgcttcaataatggaaggtccgtcgtgttcctttctgcctcacggaaacagccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="1" stop="2045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19" g_stop="478" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="479" i_stop="1371" i_length="893">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1372" g_stop="1745" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="834" r_length="374" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E719987" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19" e_stop="478"/>
          <exon e_start="1372" e_stop="1745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAAATTTGCTCACATGAACATTCAGTTTTCGCCTATCAAACTGTAATTCCATGTGGTTTTGCTTATTACTACTGATTTACGGTCAAAAGAATCAATCTTTTGAGGTGGGATGACTAATTGTTGCGGTTAGTGGAACAGAGATTTGGGTTGTTAGTGTTCAGCTATGAAATGGTTCATCCTTTTATGTTAGGGTTCATCTTAATTAACACGCGAAGCAAGCAGTGAAAAATGAAGACGGAAAAAGAGGAAGAGAGGCATATGGATCCTTTGTTTCCTAGATTACATATAAATGATACAGACAAAGGAGGTCCAAGAGCACCCCCTAGAAACAAAATGGCTCTTTGTGAACAGTCGTCATCCAGATCGCCTCAAAGTTTCACCTCTAGTTCTACTCCTGCAACCATGCAAATGCTACCTAATAGTGGAAACTCTATTTCTGCAGCATCTTCTACTCTTGTAAGTACTAATTCTTCTGTACGGTCCAAGTATTGGTAGTATGTTGTTTGGTAAAATTATCATCCATCTACTTGTCATGTTGAGTTTTGTATGATATCTATGCAATTCGTATGGTCTTAGAAATAGGAGGTAAACTATATTAGAAGAGCATATACTGAAATATTTCTTGTTTTTAATCATCCCAAACCTTTGGATTTTCAATTTTACTTCCATTCCTTTTTGTTTACTTATTGCTTGTCCTGTTTCAGATGAGTGAATCTGTTTATCCTCTTCATTCATTGCCAACTCAAGGTATTAGAAAATTGTACGTTTGCTTCATAGATTATGCAGTGTGCTTCCTTAGATTGAGAATTTCTTGAACACTTAACGTCTTACGACCAATTATGACTGCTATCACCAACAAGTTCATTGTGCTGTCTGTCCCATTCGATCTGCTCACACGAGCTCTTGAACACCCTGTAGGTTGGTTGCAACAAAAGGAATTATTTTCTCCACAATTCATCTGAGTCTTCTCATTTGGTTGAGATACCTCCCTTTTCTTCTGGAGGGATAAATTTTACTATGAGACATCCTGATGTTCCACCAGTCAAGTCGCTAAATCCTCAAGTTTTATGTCTTAAAGGGAATTTGCATGCTACATCTCAGCTTAATCCCATTCAGCAACACAGTTTATCATACTATAATAGTAACCCTTCTGCCAATAAATTAGGAAGGGAAAATGATTTTTGTGGTCCAAATTTCGTCACATCAGGGAAACCTCTATATCATGGTAACATACATAAAAGTGCAGACAAGGAAAAAATGGTTATAACAAACTCCAAACCTTCTTTGAAATTTCAAAGCGTTTTCGAAAAGCAATATAAGGATACAGACAGGATGCAACTAAATTGCAGGGAGCATAGTGGAAGTCAAGCTGGAGATCAAGCAAAGTACCAAAAGAGAGAACATTGTGTTAAACTACCTGCTCCTCATCTGTCAACTATAGAGACAACTGTGGTGCATGAAACTCCAACTCCAGGACATAGCAAGCTAAATATTAGTAAATCATTTGTATCAAGTGCTCCAGAAAACAGATGTGGTCTAGTAGGTGACTTGAATAGATGTAGTGATTCTAATTCTGAATCTGATGAAGACTCTTGGATTTTACACAAAAGGAAGGCTGCAGAAGATGTTACTAATGCGAAGCATGAAGATGCCTCGACTAAGAGATGTGCTTCAATAATGGAAGGTCCGTCGTGTTCCTTTCTGCCTCACGGAAACAGCCATC</genome_strand>
        <mrna_strand>GTCGAAAATTTGCTCACATGAACATTCAGTTTTCGCCTATCAAACTGTAATTCCATGTGGTTTTGCTTATTACTACTGATTTACGGTCAAAAGAATCAATCTTTTGAGGTGGGATGACTAATTGTTGCGGTTAGTGGAACAGAGATTTGGGTTGTTAGTGTTCAGCTATGAAATGGTTCATCCTTTTATGTTAGGGTTCATCTTAATTAACACGCGAAGCAAGCAGTGAAAAATGAAGACGGAAAAAGAGGAAGAGAGGCATATGGATCCTTTGTTTCCTAGATTACATATAAATGATACAGACAAAGGAGGTCCAAGAGCACCCCCTAGAAACAAAATGGCTCTTTGTGAACAGTCGTCATCCAGATCGCCTCAAAGTTTCACCTCTAGTTCTACTCCTGCAACCATGCAAATGCTACCTAATAGTGGAAACTCTATTTCTGCAGCATCTTCTACTCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCATAGTGGAAGTCAAGCTGGAGATCAAGCAAAGTACCAAAAGAGAGAACATTGTGTTAAACTACCTGCTCCTCATCTGTCAACTATAGAGACAACTGTGGTGCATGAAACTCCAACTCCAGGACATAGCAAGCTAAATATTAGTAAATCATTTGTATCAAGTGCTCCAGAAAACAGATGTGGTCTAGTAGGTGACTTGAATAGATGTAGTGATTCTAATTCTGAATCTGATGAAGACTCTTGGATTTTACACAAAAGGAAGGCTGCAGAAGATGTTACTAATGCGAAGCATGAAGATGCCTCGACTAAAAGATGTGCTTCAATAATGGAAGGTCCGTCGTGTTCCTTTCTGCCTCACGGAAACAGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277079" ref_strand="+" ref_description="SGN-E277079 [cLEN-22-D8]">
      <seq>aagggaaaatgatttttgtggtccaaatttcgtcacatcagggaaacctctatatcatggtaacatacataaaagtgcagacaaggaaaaaatggttataacaaactccaaaccttctttgaaatttcaaagcgttttcgaaaagcaatataaggatacagacaggatgcaactaaattgcagggagcatagtggaagtcaagctggagatcaagcaaagtaccaaaagagagaacattgtgttaaactacctgctcctcatctgtcaactatagagacaactgtggtgcatgaaactccaactccaggacatagcaagctaaatattagtaaatcatttgtatcaagtgctccagaaaacagatgtggtctagtaggtgacttgaatagatgtagtgattctaattctgaatctgatgaagactcttggattttacacaaaaggaaggctgcagaagatgttactaatgcgaagcatgaagatgcctcgactaagagatgtgcttcaataatggaaggtccgtcgtgttcctttctgcctcacggaaacagccatcagagtccgaagagagctaaatcctcttctgactgtcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="889" stop="2084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1189" g_stop="1784" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E277079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1189" e_stop="1784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAAAATGATTTTTGTGGTCCAAATTTCGTCACATCAGGGAAACCTCTATATCATGGTAACATACATAAAAGTGCAGACAAGGAAAAAATGGTTATAACAAACTCCAAACCTTCTTTGAAATTTCAAAGCGTTTTCGAAAAGCAATATAAGGATACAGACAGGATGCAACTAAATTGCAGGGAGCATAGTGGAAGTCAAGCTGGAGATCAAGCAAAGTACCAAAAGAGAGAACATTGTGTTAAACTACCTGCTCCTCATCTGTCAACTATAGAGACAACTGTGGTGCATGAAACTCCAACTCCAGGACATAGCAAGCTAAATATTAGTAAATCATTTGTATCAAGTGCTCCAGAAAACAGATGTGGTCTAGTAGGTGACTTGAATAGATGTAGTGATTCTAATTCTGAATCTGATGAAGACTCTTGGATTTTACACAAAAGGAAGGCTGCAGAAGATGTTACTAATGCGAAGCATGAAGATGCCTCGACTAAGAGATGTGCTTCAATAATGGAAGGTCCGTCGTGTTCCTTTCTGCCTCACGGAAACAGCCATCAGAGTCCGAAGAGAGCTAAATCCTCTTCTGACTGTCCTG</genome_strand>
        <mrna_strand>AAGGGAAAATGATTTTTGTGGTCCAAATTTCGTCACATCAGGGAAACCTCTATATCATGGTAACATACATAAAAGTGCAGACAAGGAAAAAATGGTTATAACAAACTCCAAACCTTCTTTGAAATTTCAAAGCGTTTTCGAAAAGCAATATAAGGATACAGACAGGATGCAACTAAATTGCAGGGAGCATAGTGGAAGTCAAGCTGGAGATCAAGCAAAGTACCAAAAGAGAGAACATTGTGTTAAACTACCTGCTCCTCATCTGTCAACTATAGAGACAACTGTGGTGCATGAAACTCCAACTCCAGGACATAGCAAGCTAAATATTAGTAAATCATTTGTATCAAGTGCTCCAGAAAACAGATGTGGTCTAGTAGGTGACTTGAATAGATGTAGTGATTCTAATTCTGAATCTGATGAAGACTCTTGGATTTTACACAAAAGGAAGGCTGCAGAAGATGTTACTAATGCGAAGCATGAAGATGCCTCGACTAAGAGATGTGCTTCAATAATGGAAGGTCCGTCGTGTTCCTTTCTGCCTCACGGAAACAGCCATCAGAGTCCGAAGAGAGCTAAATCCTCTTCTGACTGTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703368" ref_strand="+" ref_description="SGN-E703368 [FA21BC03]">
      <seq>ccttctatcaaattttcttctttgaagaatttagcatgtgatgatgttcttgaacctcctgtcgtggaacaaaaaatttctacaaaaccaaacaattttgagcttacgacagataatgtttatcttcccctccgcaaagataatgataagaagaatataccacagcaatcatctcaaaaactaaatgtagggacaccaacatcgagatcttttttattggatccaaaattagcacctcgatccttccaaccacctcctggatatcagtatttagttccaataaggtcaccttctgaaggacttatttataaaccttatacaggaccttgtccaccgcctggagggatcatagcgccagcttatggtagttgcaggcctgtgactttatctccacctataggtggagacttcgcgaatgtgccttatagtgtaccgacttcccacaagcagggtgctgggatttttcctggtcctgcactctttgatccatcctgcattcaaccgtattccatgcctgtgataaagccatctgcttcaagttcagctatcgagcaaatgaatccactttccaggatcaggtcaagtgagaaggagaatagtccacttatgcatgaggtcaacttagttaggcctcatcaaaaatcatgcaacatatcatgccagaagagtgcggtcatgtcagattgtgatcgaattattcaggcggatagagggagtgacatgcaaggaagtaccgcaagtagtcctcctgagagggtgcaaaagggtgcactttctctttttcctgtcacaccaactgcaaaaggttcagatcaaccagttcaggataacgacacggagcagcaaattcaagtcatcaaagttgtgccccataatccaaagtcagcatctgaatctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2476" stop="3976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2776" g_stop="3676" g_length="901"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="901" r_length="901" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E703368" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2776" e_stop="3676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTATCAAATTTTCTTCTTTGAAGAATTTAGCATGTGATGATGTTCTTGAACCTCCTGTCGTGGAACAAAAAATTTCTACAAAACCAAACAATTTTGAGCTTACGACAGATAATGTTTATCTTCCCCTCCGCAAAGATAATGATAAGAAGAATATACCACAGCAATCATCTCAAAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATCTGAATCTGCAG</genome_strand>
        <mrna_strand>CCTTCTATCAAATTTTCTTCTTTGAAGAATTTAGCATGTGATGATGTTCTTGAACCTCCTGTCGTGGAACAAAAAATTTCTACAAAACCAAACAATTTTGAGCTTACGACAGATAATGTTTATCTTCCCCTCCGCAAAGATAATGATAAGAAGAATATACCACAGCAATCATCTCAAAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATTGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAAGTTGTGCCCCATAATCCAAAGTCAGCATCTGAATCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552122" ref_strand="+" ref_description="SGN-E552122 [cTSB-2-O2]">
      <seq>ggatcccccgggctgcaggctcaaaactaaatgtagggacaccaacatcgagatcttttttatcggatccaaaattagcacctcgatccttccaaccacctcctggatatcagtatttagttccaataaggtcaccttctgaaggacttatttataaaccttatacaggaccttgtccaccgcctggagggatcatagcgccagcttatggtagttgcaggcctgtgactttatctccacctataggtggagacttcgcgaatgtgccttatagtgtaccgacttcccacaagcagggtgctgggatttttcctggtcctgcactctttgatccatcctgcattcaaccgtattccatgcctgtgataaagccatctgcttcaagttcagctatcgagcaaatgaatccactttccaggatcaggtcaagtgagaaggagaatagtccacttatgcatgaggtcaacttagttaggcctcatcaaaaatcatgcaacatatcatgccagaagagtgcggtcatgtcagattgtgatcgaattattcaggcggatagagggagtgacatgcaaggaagtaccgcaagtagtcctcctgagagggtgcaaaagggtgcactttctctttttcctgtcacaccaactgcaaaaggttcagatcaaccagttcaggataacgacacggagcagcaaattcaagtcatcaaggttgtgccccataatccaaagtcagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2648" stop="3965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2930" g_stop="3665" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E552122" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2930" e_stop="3665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACCACAGCAATCATCTCAAAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATC</genome_strand>
        <mrna_strand>GGATCCCCCGGGCTGCAGGCTCAAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553401" ref_strand="+" ref_description="SGN-E553401 [cTSB-5-P11]">
      <seq>ctcaaaactaaatgtagggacaccaacatcgagatcttttttatcggatccaaaattagcacctcgatccttccaaccacctcctggatatcagtatttagttccaataaggtcaccttctgaaggacttatttataaaccttatacaggaccttgtccaccgcctggagggatcatagcgccagcttatggtagttgcaggcctgtgactttatctccacctataggtggagacttcgcgaatgtgccttatagtgtaccgacttcccacaagcagggtgctgggatttttcctggtcctgcactctttgatccatcctgcattcaaccgtattccatgcctgtgataaagccatctgcttcaagttcagctatcgagcaaatgaatccactttccaggatcaggtcaagtgagaaggagaatagtccacttatgcatgaggtcaacttagttaggcctcatcaaaaatcatgcaacatatcatgccagaagagtgcggtcatgtcagattgtgatcgaattattcaggcggatagagggagtgacatgcaaggaagtaccgcaagtagtcctcctgagagggtgcaaaagggtgcactttctctttttcctgtcacaccaactgcaaaaggttcagatcaaccagttcaggataacgacacggagcagcaaattcaagtcatcaaggttgtgccccataatccaaagtcagcatctgaatctgcagcgcggatttttagatctatacaagaagaaaggaaaatgaattactagtatgcaaaaccttacaacttaatgttgtaagaaaagcctttttctctgtatgttttcccttatctaaatttccctcattttatagtttaccctctggattaaaggctctttactgtgaatatatccaatggaaagtgaaaaacaatacaggttcattcttttttctactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2648" stop="4192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2948" g_stop="3898" g_length="951"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="948" r_length="948" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E553401" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>951</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2948" e_stop="3898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATCTGAATCTGCAGCGCGGATTTTTAGATCTATACAAGAAGAAAGGAAAATGAATTACTAGTATGCAAAACCTTACAACTTAATGTTGTAAGAAAAGCCTTTTCTTCTGTATGTTTTCCCTTATCTAAATTTCCCTCATTTTATAGTTTACCTCTTGGATTAAAGGCTCTTTACTGTGAATATATTCAATGGAAAGTGAAAAGCAATACAGGTTCATTCTTTTTCTACTACTTCAT</genome_strand>
        <mrna_strand>CTCAA-AACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATCTGAATCTGCAGCGCGGATTTTTAGATCTATACAAGAAGAAAGGAAAATGAATTACTAGTATGCAAAACCTTACAACTTAATGTTGTAAGAAAAGCCTTTTTCTCTGTATGTTTTCCCTTATCTAAATTTCCCTCATTTTATAGTTTACCCTCTGGATTAAAGGCTCTTTACTGTGAATATATCCAATGGAAAGTGAAAAACAATACAGGTTCATTCTTTTT-T-CTACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553120" ref_strand="+" ref_description="SGN-E553120 [cTSB-1-H2]">
      <seq>gtggatcccccgggctgcaggctcaaaactaaatgtagggacaccaacatcgagatcttttttatcggatccaaaattagcacctcgatccttccaaccacctcctggatatcagtatttagttccaataaggtcaccttctgaaggacttatttataaaccttatacaggaccttgtccaccgcctggagggatcatagcgccagcttatggtagttgcaggcctgtgactttatctccacctataggtggagacttcgcgaatgtgccttatagtgtaccgacttcccacaagcagggtgctgggatttttcctggtcctgcactctttgatccatcctgcattcaaccgtattccatgcctgtgataaagccatctgcttcaagttcagctatcgagcaaatgaatccactttccaggatcaggtcaagtgagaaggagaatagtccacttatgcatgaggtcaacttagttaggcctcatcaaaaatcatgcaacatatcatgccagaagagtgcggtcatgtcagattgtgatcgaattattcaggcggatagagggagtgacatgcaaggaagtaccgcaagtagtcctcctgagagggtgcaaaagggtgcactttctctttttcctgtcacaccaactgcaaaaggttcagatcaaccagttcaggataacgacacggagcagcaaattcaagtcatcaaggttgtgccccataatccaaagtcagcatctgaatctgcagcgcggatttttagatctatacaagaagaaaggaaaatgaattactagtatgcaaaaccttacaacttaatgttgtaagaaaagccttttcttctgtatgttttcccttatctaaaattccctcattttatagtttacctcttggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2648" stop="4124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2952" g_stop="3824" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="897" r_length="873" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E553120" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2952" e_stop="3824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATCTGAATCTGCAGCGCGGATTTTTAGATCTATACAAGAAGAAAGGAAAATGAATTACTAGTATGCAAAACCTTACAACTTAATGTTGTAAGAAAAGCCTTTTCTTCTGTATGTTTTCCCTTATCTAAATTTCCCTCATTTTATAGTTTACCTCTTGGATTA</genome_strand>
        <mrna_strand>AAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATCTGAATCTGCAGCGCGGATTTTTAGATCTATACAAGAAGAAAGGAAAATGAATTACTAGTATGCAAAACCTTACAACTTAATGTTGTAAGAAAAGCCTTTTCTTCTGTATGTTTTCCCTTATCTAAAATTCCCTCATTTTATAGTTTACCTCTTGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551808" ref_strand="+" ref_description="SGN-E551808 [cTSB-1-O19]">
      <seq>gtggatcccccgggctgcaggctcaaaactaaatgtagggacaccaacatcgagatcttttttatcggatccaaaattagcacctcgatccttccaaccacctcctggatatcagtatttagttccaataaggtcaccttctgaaggacttatttataaaccttatacaggaccttgtccaccgcctggagggatcatagcgccagcttatggtagttgcaggcctgtgactttatctccacctataggtggagacttcgcgaatgtgccttatagtgtaccgacttcccacaagcagggtgctgggatttttcctggtcctgcactctttgatccatcctgcattcaaccgtattccatgcctgtgataaagccatctgcttcaagttcagctatcgagcaaatgaatccactttccaggatcaggtcaagtgagaaggagaatagtccacttatgcatgaggtcaacttagttaggcctcatcaaaaatcatgcaacatatcatgccagaagagtgcggtcatgtcagattgtgatcgaattattcaggcggatagagggagtgacatgcaaggaagtaccgcaagtagtcctcctgagagggtgcaaaagggtgcactttctctttttcctgtcacaccaactgcaaaaggttcagatcaaccagttcaggataacgacacggagcagcaaattcaagtcatcaaggttgtgccccataatccaaagtcagcatctgaatctgcagcgcggatttttagatctatacaagaagaaaggaaaatgaattactagtatgcaaaaccttacaacttaatgttgtaagaaaaagcttttcttctgtatgttttcccttatctaaatttccctcatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2648" stop="4105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2952" g_stop="3805" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="878" r_length="854" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E551808" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2952" e_stop="3805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATCTGAATCTGCAGCGCGGATTTTTAGATCTATACAAGAAGAAAGGAAAATGAATTACTAGTATGCAAAACCTTACAACTTAATGTTGTAAGAAAAGCCTTTTCTTCTGTATGTTTTCCCTTATCTAAATTTCCCTCATTTTA</genome_strand>
        <mrna_strand>AAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATCTGAATCTGCAGCGCGGATTTTTAGATCTATACAAGAAGAAAGGAAAATGAATTACTAGTATGCAAAACCTTACAACTTAATGTTGTAAGAAAAAGCTTTTCTTCTGTATGTTTTCCCTTATCTAAATTTCCCTCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740150" ref_strand="-" ref_description="SGN-E740150 [LC20BB11]">
      <seq>tttttttttttttttagtagaaaaagaatgaacctgtattgcttttcactttccattgaatatattcacagtaaagagcctttaatccaagaggtaaactataaaatgagggaaatttagataagggaaaacatacagaagaaaaggcttttcttacaacattaagttgtaaggttttgcatactagtaattcattttcctttcttcttgtatagatctaaaaatccgcgctgcagattcagatgctgactttggattatggggcacaaccttgatgacttgaatttgctgctccgtgtcgttatcctgaactggttgatctgaaccttttgcagttggtgtgacaggaaaaagagaaagtgcacccttttgcaccctctcaggaggactacttgcggtacttccttgcatgtcactccctctatccgcctgaataattcgatcacaatctgacatgaccgcactcttctggcatgatatgttgcatgatttttgatgaggcctaactaagttgacctcatgcataagtggactattctccttctcacttgacctgatcctggaaagtggattcatttgctcgatagctgaacttgaaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47207" stop="3004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4007" g_stop="3994" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3993" i_stop="3893" i_length="101">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3892" g_stop="3304" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="603" r_length="589" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E740150" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740150" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4007" e_stop="3994"/>
          <exon e_start="3892" e_stop="3304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACATTTTTCATGTATCCTTACCGCCGTCCAACACATTTAGCAAGTTTGAATGTACAGAGTCAGAAAGTATGATGGAGCAGGATGATTGAAAGAGAAAATCAAGAGAATGAAGTAGTAGAAAAAGAATGAACCTGTATTGCTTTTCACTTTCCATTGAATATATTCACAGTAAAGAGCCTTTAATCCAAGAGGTAAACTATAAAATGAGGGAAATTTAGATAAGGGAAAACATACAGAAGAAAAGGCTTTTCTTACAACATTAAGTTGTAAGGTTTTGCATACTAGTAATTCATTTTCCTTTCTTCTTGTATAGATCTAAAAATCCGCGCTGCAGATTCAGATGCTGACTTTGGATTATGGGGCACAACCTTGATGACTTGAATTTGCTGCTCCGTGTCGTTATCCTGAACTGGTTGATCTGAACCTTTTGCAGTTGGTGTGACAGGAAAAAGAGAAAGTGCACCCTTTTGCACCCTCTCAGGAGGACTACTTGCGGTACTTCCTTGCATGTCACTCCCTCTATCCGCCTGAATAATTCGATCACAATCTGACATGACCGCACTCTTCTGGCATGATATGTTGCATGATTTTTGATGAGGCCTAACTAAGTTGACCTCATGCATAAGTGGACTATTCTCCTTCTCACTTGACCTGATCCTGGAAAGTGGATTCATTTGCTCGATAGCTGAACTTGAAGCAGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT.....................................................................................................TAGTAGAAAAAGAATGAACCTGTATTGCTTTTCACTTTCCATTGAATATATTCACAGTAAAGAGCCTTTAATCCAAGAGGTAAACTATAAAATGAGGGAAATTTAGATAAGGGAAAACATACAGAAGAAAAGGCTTTTCTTACAACATTAAGTTGTAAGGTTTTGCATACTAGTAATTCATTTTCCTTTCTTCTTGTATAGATCTAAAAATCCGCGCTGCAGATTCAGATGCTGACTTTGGATTATGGGGCACAACCTTGATGACTTGAATTTGCTGCTCCGTGTCGTTATCCTGAACTGGTTGATCTGAACCTTTTGCAGTTGGTGTGACAGGAAAAAGAGAAAGTGCACCCTTTTGCACCCTCTCAGGAGGACTACTTGCGGTACTTCCTTGCATGTCACTCCCTCTATCCGCCTGAATAATTCGATCACAATCTGACATGACCGCACTCTTCTGGCATGATATGTTGCATGATTTTTGATGAGGCCTAACTAAGTTGACCTCATGCATAAGTGGACTATTCTCCTTCTCACTTGACCTGATCCTGGAAAGTGGATTCATTTGCTCGATAGCTGAACTTGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739503" ref_strand="-" ref_description="SGN-E739503 [LC17CH09]">
      <seq>tttttttttttttttagtagaaaaagaatgaacctgtattgcttttcactttccattgaatatattcacagtaaagagcctttaatccaagaggtaaactataaaatgagggaaatttagataagggaaaacatacagaagaaaaggcttttcttacaacattaagttgtaaggttttgcatactagtaattcattttcctttcttcttgtatagatctaaaaatccgcgctgcagattcagatgctgactttggattatggggcacaaccttgatgacttgaatttgctgctccgtgtcgttatcctgaactggttgatctgaaccttttgcagttggtgtgacaggaaaaagagaaagtgcacccttttgcaccctctcaggaggactacttgcggtacttccttgcatgtcactccctctatccgcctgaataattcgatcacaatctgacatgaccgcactcttctggcatgatatgttgcatgatttttgatgaggcctaactaagttgacctcatgcataagtggactattctccttctcacttgacctgatcctggaaagtggattcatttgctcgatagctgaacttgaagcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47207" stop="3004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4007" g_stop="3994" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3993" i_stop="3893" i_length="101">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3892" g_stop="3304" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="603" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E739503" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739503" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4007" e_stop="3994"/>
          <exon e_start="3892" e_stop="3304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACATTTTTCATGTATCCTTACCGCCGTCCAACACATTTAGCAAGTTTGAATGTACAGAGTCAGAAAGTATGATGGAGCAGGATGATTGAAAGAGAAAATCAAGAGAATGAAGTAGTAGAAAAAGAATGAACCTGTATTGCTTTTCACTTTCCATTGAATATATTCACAGTAAAGAGCCTTTAATCCAAGAGGTAAACTATAAAATGAGGGAAATTTAGATAAGGGAAAACATACAGAAGAAAAGGCTTTTCTTACAACATTAAGTTGTAAGGTTTTGCATACTAGTAATTCATTTTCCTTTCTTCTTGTATAGATCTAAAAATCCGCGCTGCAGATTCAGATGCTGACTTTGGATTATGGGGCACAACCTTGATGACTTGAATTTGCTGCTCCGTGTCGTTATCCTGAACTGGTTGATCTGAACCTTTTGCAGTTGGTGTGACAGGAAAAAGAGAAAGTGCACCCTTTTGCACCCTCTCAGGAGGACTACTTGCGGTACTTCCTTGCATGTCACTCCCTCTATCCGCCTGAATAATTCGATCACAATCTGACATGACCGCACTCTTCTGGCATGATATGTTGCATGATTTTTGATGAGGCCTAACTAAGTTGACCTCATGCATAAGTGGACTATTCTCCTTCTCACTTGACCTGATCCTGGAAAGTGGATTCATTTGCTCGATAGCTGAACTTGAAGCAGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT.....................................................................................................TAGTAGAAAAAGAATGAACCTGTATTGCTTTTCACTTTCCATTGAATATATTCACAGTAAAGAGCCTTTAATCCAAGAGGTAAACTATAAAATGAGGGAAATTTAGATAAGGGAAAACATACAGAAGAAAAGGCTTTTCTTACAACATTAAGTTGTAAGGTTTTGCATACTAGTAATTCATTTTCCTTTCTTCTTGTATAGATCTAAAAATCCGCGCTGCAGATTCAGATGCTGACTTTGGATTATGGGGCACAACCTTGATGACTTGAATTTGCTGCTCCGTGTCGTTATCCTGAACTGGTTGATCTGAACCTTTTGCAGTTGGTGTGACAGGAAAAAGAGAAAGTGCACCCTTTTGCACCCTCTCAGGAGGACTACTTGCGGTACTTCCTTGCATGTCACTCCCTCTATCCGCCTGAATAATTCGATCACAATCTGACATGACCGCACTCTTCTGGCATGATATGTTGCATGATTTTTGATGAGGCCTAACTAAGTTGACCTCATGCATAAGTGGACTATTCTCCTTCTCACTTGACCTGATCCTGGAAAGTGGATTCATTTGCTCGATAGCTGAACTTGAAGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690819" ref_strand="+" ref_description="SGN-E690819 [LH_Ea04I01]">
      <seq>taataaattttcataagaaatttttatttcaagattttctcaactctgttgaaacaacaagaattagttttcttcttcaaagttcaaacccaaacatctcattattgtagcttggattttagtttttatcttcttcttcttatttttttttcttgttaatgacaaaatagcagcttcacattttgataatatctgttttaaattttgaaagcttttgctaatttaattaattttcttaatgagtaatggatttttttgtaactacataagaaaaaaggagaattgacagattttatttttttttttatagttttttgccgatttggtgtttgattgaaagttgagtttgcgaatatggggattttggagaatggcaaagacaacaagcctttatcattaaaagtgcttcagtttctcttgttgtttttgggtttaggaattgctttatcaattttaagtatgtttatgcttagattttcagaattgaaaaatgtactccctgtggtacaatctagaataaatccatgttttgaacaacaaaatagtttagagaattggattaagcctctatcaaacttgcatcattcaatgaatgatgctgagcttttttggagagcttcattggttcctcaaatgaaaaaattgccttttaagagaacacctaaaatcgcgttcttgttcttaacgagagggcctctccctttggctccgttgtgggagaggtttttcaaagggaatgaagagctttattcaatctacattcataatttgccatcttacaaacctgattttcccacttcatctgtgtttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6500" stop="5110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6201" g_stop="5410" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E690819" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6201" e_stop="5410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAATTTTTCATAAGAAATTTTTATTTCAAGATTTTGTCAACTCTGTTG--A-AACAAGAATTAGTTTTCTTCTTCAAAGTTCAAACCCAAACGTCTCATTATTGTGGCTTGGATTTTAGTTTTTTATCTTCTTCTTCTTA--TTTTTTTCTTGTTAATGACAAAATAGCAGCTTCACATTTTGATAATATCTGTTTTAAATTTTAAAAGCTTTTGCTAATTTAATTAATTTTCTTAATGAGTAATGGATTTTTTTTTAACTACATAAGAAAAAAGGAGAATTGACAG-----A--TTTTTTTTT-T--CTTTTTGCCGATTTGGTGTTCGATTGAAAGTTGAGTTTGCGAATATGGGGATTTTGGAGAATGGCAAAGACAACAAGCCTTTATCATTAAAAGTGCTTCAGTTTCTCTTGTTGTTTTTGGGTTTAGGAATTGCTTTATCAATTTTAAGTATGTTTATGCTTAGATTTTCAGAATTGAAAAAGGTACTCCCTGTGGTACAATC---------TCCATGTTTTGAACAACAAAATAGTTTAGAGAATTGGATTAAGCCTCTATCAAACTTGCATCATTCAATGAATGATGCTGAGCTTTTTTGGAGGGCTTCATTTGTTCCTCAAATGAAAAAATTGCCTTTTAAGAGAACACCTAAAATCGCGTTCTTGTTCTTAACGAGAGGGCCTCTGCCTTTGGCTCCGTTGTGGGAGAGGTTTTTCAAAGGGAATGAAGAGTTTTATTCAATCTACATTCATAATTTACCATCTTACAACCCTGATTTCCCAACTTCATCTGTG-TTTTATG</genome_strand>
        <mrna_strand>TAATAAAT-TTTCATAAGAAATTTTTATTTCAAGATTTTCTCAACTCTGTTGAAACAACAAGAATTAGTTTTCTTCTTCAAAGTTCAAACCCAAACATCTCATTATTGTAGCTTGGATTTTAG-TTTTTATCTTCTTCTTCTTATTTTTTTTTCTTGTTAATGACAAAATAGCAGCTTCACATTTTGATAATATCTGTTTTAAATTTTGAAAGCTTTTGCTAATTTAATTAATTTTCTTAATGAGTAATGGATTTTTTTGTAACTACATAAGAAAAAAGGAGAATTGACAGATTTTATTTTTTTTTTTATAGTTTTTTGCCGATTTGGTGTTTGATTGAAAGTTGAGTTTGCGAATATGGGGATTTTGGAGAATGGCAAAGACAACAAGCCTTTATCATTAAAAGTGCTTCAGTTTCTCTTGTTGTTTTTGGGTTTAGGAATTGCTTTATCAATTTTAAGTATGTTTATGCTTAGATTTTCAGAATTGAAAAATGTACTCCCTGTGGTACAATCTAGAATAAATCCATGTTTTGAACAACAAAATAGTTTAGAGAATTGGATTAAGCCTCTATCAAACTTGCATCATTCAATGAATGATGCTGAGCTTTTTTGGAGAGCTTCATTGGTTCCTCAAATGAAAAAATTGCCTTTTAAGAGAACACCTAAAATCGCGTTCTTGTTCTTAACGAGAGGGCCTCTCCCTTTGGCTCCGTTGTGGGAGAGGTTTTTCAAAGGGAATGAAGAGCTTTATTCAATCTACATTCATAATTTGCCATCTTACAAACCTGATTTTCCCACTTCATCTGTGTTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329045" ref_strand="+" ref_description="SGN-E329045 [cTOC-24-K20]">
      <seq>tttcactggcgtcttccttttaagtttattgcgtcttcttgcacaggccgtcgaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttatnaagatggcagttattctgattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10781" stop="13429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11081" g_stop="11167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="251" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="415" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12831" g_stop="13134" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="719" r_length="304" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E329045" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11081" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="13134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTAATGAGT</genome_strand>
        <mrna_strand>TTTCACTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATNAAGATGGCAGTTATTCTGATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539164" ref_strand="+" ref_description="SGN-E539164 [TUS-58-M14](-)">
      <seq>actggcgtcttccttttaagtttattgcgtcttcttgcacaggccgtcgaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttataaagatggcagttattctgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10785" stop="13429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11085" g_stop="11167" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="247" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="411" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12831" g_stop="13138" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="719" r_length="308" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E539164" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11085" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="13138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTAATGAGTTCCA</genome_strand>
        <mrna_strand>ACTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548176" ref_strand="+" ref_description="SGN-E548176 [TUS-58-M14]">
      <seq>actggcgtcttccttttaagtttattgcgtcttcttgcacaggccgtcgaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttataaagatggcagttattctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10785" stop="13429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11085" g_stop="11167" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="247" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="411" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12831" g_stop="13124" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="705" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="718"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E548176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11085" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="13124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTG</genome_strand>
        <mrna_strand>ACTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539174" ref_strand="+" ref_description="SGN-E539174 [TUS-58-M18]">
      <seq>actggcgtcttccttttaagtttattgcgtcttcttgcactggccgtcaaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggggtcgtattcagcaaggagcctaacaatctttacaatcttcactcttacaagcattctggcctatcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccatgtagcagataactattacaggccacatctgaagaaggcatcccttgcaaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggcgtcaataagagaaacaggcaggcctaaattcccattctagaatatgttaagctaggctgtatgagctgcacttgattttttttttcttccaatggtcccctttaagtacccaaaggtttgctattttgagttcatattttcctagatttttggctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10785" stop="13380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11085" g_stop="11167" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="247" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="411" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12831" g_stop="13080" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="664" r_length="253" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E539174" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11085" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="13080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGC-AAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTC-TTGAGTACCCGAAAGTTTGCTA-TTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAA</genome_strand>
        <mrna_strand>ACTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACTGGCCGTCAAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGGGTCGTATTCAGCAAGGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCACATCTGAAGAAGGCATCCCTTGCAAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGCGTCAATAAGAGAAACAGGCAGGCCTAAATTCCCATTCTAGAATATGTTAAGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCAATGGTCCCCTTTAAGTACCCAAAGGTTTGCTATTTTGAGTTCATATTTTCCTAGATTTTTGGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278146" ref_strand="+" ref_description="SGN-E278146 [cLER-9-C1]">
      <seq>ctggcgtcttccttttaagtttattgcgtcttcttgcacaggccgtcgaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagaatgagtgctgtgaacaagagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10786" stop="13205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11086" g_stop="11167" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="246" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="410" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12831" g_stop="12905" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="485" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E278146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11086" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="12905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTC</genome_strand>
        <mrna_strand>CTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGAATGAGTGCTGTGAACAAGAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286228" ref_strand="+" ref_description="SGN-E286228 [cLES-11-B15]">
      <seq>tttattgcgtcttcttgcacaggccgtcgaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10805" stop="13290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11105" g_stop="11167" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="227" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="391" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12831" g_stop="12990" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="551" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E286228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11105" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="12990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCT</genome_strand>
        <mrna_strand>TTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543345" ref_strand="+" ref_description="SGN-E543345 [TUS-65-B20]">
      <seq>gcgtcttcttgcacaggccgtcgaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggttatgtattgctcttcatttcccgttattccgttggttttactaatctcatttatgtattccctatcaaactgctatcctctattttaagctgtgagggtggtctagtagaaacaacctctctatctctatgaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagattttataaagatggcagttattctgattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10811" stop="13429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11111" g_stop="11167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="221" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="385" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12535" i_length="340">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12536" g_stop="12670" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="520" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12671" i_stop="12830" i_length="160">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12831" g_stop="13133" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="822" r_length="302" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E543345" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11111" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12536" e_stop="12670"/>
          <exon e_start="12831" e_stop="13133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTAATGAG</genome_strand>
        <mrna_strand>GCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG....................................................................................................................................................................................................................................................................................................................................................GTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAG................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGA-TTTTATAAAGATGGCAGTTATTCTGATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543344" ref_strand="+" ref_description="SGN-E543344 [TUS-65-B20](-)">
      <seq>gcgtctcttgcacaggccgtcgaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggttatgtattgctcttcatttcccgttattccgttggttttactaatctcatttatgtattccctatcaaactgctatcctctattttaagctgtgagggtggtctagtagaaacaacctctctatctctatgaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttataaagatggcagttattctgattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10811" stop="13429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11111" g_stop="11167" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="220" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="384" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12535" i_length="340">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12536" g_stop="12670" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="519" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12671" i_stop="12830" i_length="160">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12831" g_stop="13128" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="817" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="818" polyA_stop="835"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E543344" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11111" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12536" e_stop="12670"/>
          <exon e_start="12831" e_stop="13128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTA</genome_strand>
        <mrna_strand>GCGTC-TCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG....................................................................................................................................................................................................................................................................................................................................................GTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAG................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304133" ref_strand="+" ref_description="SGN-E304133 [cLEX-6-A11]">
      <seq>cgtcttcttgcacaggccgtcgaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggttatgtattgctcttcatttcccgttattccgttggttttactaatctcatttatgtattccctatcaaactgctatcctctattttaagctgtgagggtggtctagtagaaacaacctctctatctctatgaggtagcagataactattacaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10812" stop="13153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11112" g_stop="11167" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="220" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="384" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12535" i_length="340">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12536" g_stop="12670" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="519" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12671" i_stop="12830" i_length="160">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12831" g_stop="12853" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="542" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E304133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11112" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12536" e_stop="12670"/>
          <exon e_start="12831" e_stop="12853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCC</genome_strand>
        <mrna_strand>CGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG....................................................................................................................................................................................................................................................................................................................................................GTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAG................................................................................................................................................................GTAGCAGATAACTATTACAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712514" ref_strand="+" ref_description="SGN-E712514 [FB05AC07]">
      <seq>cacaggccgtcgaatcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttataaagatggcagttattctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10822" stop="13429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11122" g_stop="11167" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="210" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="374" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12831" g_stop="13124" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="668" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="685"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E712514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11122" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="13124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTG</genome_strand>
        <mrna_strand>CACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734379" ref_strand="+" ref_description="SGN-E734379 [LB12CA11]">
      <seq>atcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttataaagatggcagttattctgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10835" stop="13429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11135" g_stop="11167" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="197" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="361" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12831" g_stop="13128" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="659" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="673"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E734379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11135" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="13128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTA</genome_strand>
        <mrna_strand>ATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715588" ref_strand="+" ref_description="SGN-E715588 [FB14CH04]">
      <seq>atcgaaactctacagacccttttgctactcacaggtaggtggtgttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttataaagatggcagttattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10835" stop="13425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11135" g_stop="11167" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11248" g_stop="11411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="197" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="361" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12831" g_stop="13125" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="656" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E715588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11135" e_stop="11167"/>
          <exon e_start="11248" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="13125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAACTCTACAGACCCTTTTGCTACTCACAGTAAGTCCCGAACGCATCTTTGCTTTTCTGCAGATCAATCGACGTGATTAATTAAGCTTTATTTGTGATCCAATTGACAGGGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGA</genome_strand>
        <mrna_strand>ATCGAAACTCTACAGACCCTTTTGCTACTCACA................................................................................GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336680" ref_strand="+" ref_description="SGN-E336680 [cTOE-4-L16]">
      <seq>ttgaaatgacgacagttccagggcaactggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtaccgccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagactgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgctacttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10959" stop="13389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11259" g_stop="11411" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="317" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12831" g_stop="13089" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="576" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E336680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11259" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="13089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTC</genome_strand>
        <mrna_strand>TTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539171" ref_strand="+" ref_description="SGN-E539171 [TUS-58-M18](-)">
      <seq>gacagttccagggcaacgggtttgggagatcgtcaagaaaaacaactcatttttggtgaaggagtttggtaatggtacccccggtgtcgtattcagcaaagagcctaacaatctttacaatcttcactcttacaagcattctggcctagcaaacaagaagtctgtgaccatccagcctggaggcaaagatcaatcagtgttgcttgttccttcaaagaccaagaaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttacaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttataaagatggcagttttcgcccttttatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10969" stop="13422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11269" g_stop="11411" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12032" g_stop="12195" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="307" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12831" g_stop="13115" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="592" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E539171" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11269" e_stop="11411"/>
          <exon e_start="12032" e_stop="12195"/>
          <exon e_start="12831" e_stop="13115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTGGTTAGTATTGTAAACATTACCCTCTGCTTATGTCGATTTAACAAATTTGGTTTCTGTTGCGAATAGTGGTACCTTGAGCTTATACGGTAATACAGCTAATAGGTTTTTGGGGAAATGTTCTATTTTTCAAGCTAAACTGATAGCTGTTTTGTGGAGTATATTGTTTTTACTACTTGCACTTAATGTGATGTTGGAAAACTGGATATATATCATGTGTGCATTCAAACTGTAATGAAGTTCAGCTATTTTCCATATTCCATTAGTATGTTTTATGTGGGCAAGCCATGTCTCGATGATGGAATAACCTTTCTGATGAACCAAAATTCAGTTAAGGGTTTGAGTTTCTTCGTAGAAATGAAAAAGGAAGGCTACATGTAGTATCTGTCCACTGTCCCCTTACACCGAACTAACCACAGAGCACCTAGCATGTGGGATAAGCCATTTAAGCCCGTTAGTATGTCGTATGGAATGTTCTTACATGAAAGAATAACGTGAATTTGTAATAGTCATTGAATGGAACATTGCATTGCTGAATGAGTTAGATTTCTAGTTTTAGCTATTTTGGTTTTCCATTGCTTGCGTTAAGCATTAGTTGAACTGCTGTTGTCATGACTTTGTAGGCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCA</genome_strand>
        <mrna_strand>GACAGTTCCAGGGCAACGGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCCCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCAAACAAGAAGTCTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGTTCCTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTACAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353645" ref_strand="+" ref_description="SGN-E353645 [cTOS-10-K2]">
      <seq>aaacagaacaagccttcaagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttataaagatggcagttattctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11812" stop="13429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12112" g_stop="12195" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12831" g_stop="13124" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="378" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="394"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E353645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12112" e_stop="12195"/>
          <exon e_start="12831" e_stop="13124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTG</genome_strand>
        <mrna_strand>AAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303995" ref_strand="+" ref_description="SGN-E303995 [cLEX-6-A11](-)">
      <seq>caagtttgctgaataaatctgtaatgaagaaggagtttcggtgcatggccaaggctgtatcaaaccaggttatgtattgctcttcatttcccgttattccgttggttttactaatctcatttatgtattccctatcaaactgctatcctctattttaagctgtgagggtggtctagtagaaacaacctctctatctctatgaggtagcagataactattacaggccagatctgaagaaggcatcccttgcaagattgagtgctgtgaacaagagtctcaagattgcgaaatctggtgtcaagaagagaaacaggcaggcctagattcccattctagaatatgttaggctaggctgtatgagctgcacttgattttttttttcttcccaatgtcctcttgagtacccgaaagtttgctatttgagttcatatttttctagatttttggctaaaacgtacgttctatttgagatttttataaagatggcagttattctgattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11828" stop="13429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12128" g_stop="12195" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12196" i_stop="12535" i_length="340">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12536" g_stop="12670" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="203" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12671" i_stop="12830" i_length="160">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12831" g_stop="13128" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="501" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="518"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E303995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12128" e_stop="12195"/>
          <exon e_start="12536" e_stop="12670"/>
          <exon e_start="12831" e_stop="13128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAGGTGATTGTCTTTTTTGACCAGTAGAATGTGTATATTTACATGAATTTGTTTGGTCTCAAGCTGCATATTAGCTGCTTATAATGATCACGGGTTTGATTGTTCACTTCTTGATTGTTTCAAAAGGCTTGGTATATGTTCTGTAATTTGTTTGACGTTTTTTTGGATGAATACAAAAAGTTGTAAATGGATTAAAAATTCACTTTCTAGAGAGCTGGCAATTGGAGTTATCTGAGCATTACAATGTGTCTGACTAATTATTACTGTCTACTGTTCACCATTTTCTCCAAATTGTGCTTGACATATTCTATGTAATGAATATACCTCCACCTTTCTGTTGTAGGTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAGGTAAGGTTTGCCAGACATGCTGTTGAATATACCTCTACCCTTCATAGCATCAGTATTTTTGTTAGATAATTTGATTATTTTTTCTCAGCAGGTTTTTCTTTGCCTTCACTATTTTCAGATGTTGCAATCTTTAATTTGCATAAACTTGTATGTGATACAGGTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTA</genome_strand>
        <mrna_strand>CAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG....................................................................................................................................................................................................................................................................................................................................................GTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAG................................................................................................................................................................GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721716" ref_strand="+" ref_description="SGN-E721716 [FC14DH12]">
      <seq>gggccctacaaaattcagtgggcatatccaaaatcggaaagggagaactgctaaccctaacttcagaaattgaaaaggtgattgattgatcaaaggcgaagaatcgccaaaaacaatcgaatcaccaaaggttagaaaatgggaaacgccgagaaattgatgaatcagatcatggagctcaagttcacatcgaagagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgtgtagtcaaattgctttaannaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13604" stop="15201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13903" g_stop="14295" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14904" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="904" r_length="511" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="905" polyA_stop="926"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E721716" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13903" e_stop="14295"/>
          <exon e_start="14394" e_stop="14904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCCTACAAAATTGAGTGGGCATATCCAAAATCGGAAAGGGAGAACTGCTAACCCTAACTTCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCA</genome_strand>
        <mrna_strand>GGGCCCTACAAAATTCAGTGGGCATATCCAAAATCGGAAAGGGAGAACTGCTAACCCTAACTTCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAAATTGCTTTAANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337598" ref_strand="+" ref_description="SGN-E337598 [cTOE-11-H23]">
      <seq>ctaaccctaacttcagaaattgaaaaggtgattgattgatcaaaggcgaagaatcgccaaaaacaatcgaatcaccaaaggttagaaaatgggaaacgccgagaaattgatgaatcagatcatggagctcaagttcacatcgaagagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13653" stop="14782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13953" g_stop="14295" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14482" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="432" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E337598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13953" e_stop="14295"/>
          <exon e_start="14394" e_stop="14482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACCCTAACTTCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTC</genome_strand>
        <mrna_strand>CTAACCCTAACTTCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305174" ref_strand="+" ref_description="SGN-E305174 [cLEY-18-B22]">
      <seq>taaccctaacttcagaaattgaaaaggtgattgattgatcaaaggcgaagaatcgccaaaaacaatcgaatcaccaaaggttagaaaatgggaaacgccgagaaattgatgaatcagatcatggagctcaagttcacatcgaagagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13654" stop="14977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13954" g_stop="14295" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14677" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="626" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E305174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13954" e_stop="14295"/>
          <exon e_start="14394" e_stop="14677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAACTTCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATC</genome_strand>
        <mrna_strand>TAACCCTAACTTCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718770" ref_strand="+" ref_description="SGN-E718770 [FC05DA08]">
      <seq>agggcgattggcggccaatcggccgaattgaaccctaacttcagcaattgaaaaggtgattgattgatcaaaggcgaagaatcgccaaaaacaatcgaatcaccaaaggttagaaaatgggaaacgccgagaaattgatgaatcagatcatggagctcaagttcacatcgaagagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13655" stop="15139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13958" g_stop="14295" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="371" r_length="338" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14839" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="817" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E718770" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13958" e_stop="14295"/>
          <exon e_start="14394" e_stop="14839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAACTTCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACA</genome_strand>
        <mrna_strand>CCTAACTTCAGCAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342457" ref_strand="+" ref_description="SGN-E342457 [cTOF-8-K10]">
      <seq>tcagaaattgaaaaggtgattgattgatcaaaggcgaagaatcgccaaaaacaatcgaatcaccaaaggttagaaaatgggaaacgccgagaaattgatgaatcagatcatggagctcaagttcacatcgaagagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcagggcgcgtgggtaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13665" stop="15053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13965" g_stop="14295" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14753" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="691" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E342457" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13965" e_stop="14295"/>
          <exon e_start="14394" e_stop="14753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTG</genome_strand>
        <mrna_strand>TCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAGGGCGCGTGGGTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733661" ref_strand="+" ref_description="SGN-E733661 [LB10CD12]">
      <seq>gaaaaggtgattgattgatcaaaggcgaagaatcgccaaaaacaatcgaatcaccaaaggttagaaaatgggaaacgccgagaaattgatgaatcagatcatggagctcaagttcacatcgaagagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgtgtagtcaatttgctttaccaaaaanaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13674" stop="15205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13974" g_stop="14295" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14904" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="833" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="834" polyA_stop="851"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E733661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13974" e_stop="14295"/>
          <exon e_start="14394" e_stop="14904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCA</genome_strand>
        <mrna_strand>GAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734398" ref_strand="+" ref_description="SGN-E734398 [LB12CC07]">
      <seq>gaaaaggtgattgattgatcaaaggcgaagaatcgccaaaaacaatcgaatcaccaaaggttagaaaatgggaaacgccgagaaattgatgaatcagatcatggagctcaagttcacatcgaagagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgtgtagtcaatttgctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13674" stop="15202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13974" g_stop="14295" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14902" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="831" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E734398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13974" e_stop="14295"/>
          <exon e_start="14394" e_stop="14902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTAC</genome_strand>
        <mrna_strand>GAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720409" ref_strand="+" ref_description="SGN-E720409 [FC10CH12]">
      <seq>ggcgaattggcggccaatcggccgaattggccaaaaacaatcgacccatcaaaggttagaaaatgggaaacgccgagaaattgatgaatcagatcatggagctcaagttcacatcgaagagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13693" stop="15053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14004" g_stop="14295" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="317" r_length="292" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14753" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="677" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E720409" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14004" e_stop="14295"/>
          <exon e_start="14394" e_stop="14753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTG</genome_strand>
        <mrna_strand>ATTGGCCAAAAACAATCGACCCATCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721103" ref_strand="+" ref_description="SGN-E721103 [FC12DB06]">
      <seq>aaaacaatcgaatcaccaaaggttagaaaatgggaaacgccgagaaattgatgaatcaaatcatggagctcaagttcacatcgaaaagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccaagctcaaggtgcgtgggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13712" stop="15051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14012" g_stop="14295" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14751" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="642" r_length="358" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E721103" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14012" e_stop="14295"/>
          <exon e_start="14394" e_stop="14751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAAT</genome_strand>
        <mrna_strand>AAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAAATCATGGAGCTCAAGTTCACATCGAAAAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCAAGCTCAAGGTGCGTGGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734330" ref_strand="+" ref_description="SGN-E734330 [LB12BE09]">
      <seq>caaaggttagaaaatgggaaacgccgagaaattgatgaatcagatcatggagctcaagttcacatcgaagagtctccaacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgtgtagtcaatttgctttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13728" stop="15205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14028" g_stop="14295" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14901" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="776" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="777" polyA_stop="793"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E734330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14028" e_stop="14295"/>
          <exon e_start="14394" e_stop="14901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTA</genome_strand>
        <mrna_strand>CAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728294" ref_strand="+" ref_description="SGN-E728294 [LA17BD05]">
      <seq>caacgccaagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttggtgatgtgtagtcaatttgctttaccaattgagcctgtgacatctgtatngttgcattattagacattgcagcatcttaagcctttctcatgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13804" stop="15274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14104" g_stop="14295" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14973" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="771" r_length="579" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="772" polyA_stop="791"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E728294" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14104" e_stop="14295"/>
          <exon e_start="14394" e_stop="14973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTT-GTGATTGTGTAGTCAATTTGCTTTACCAATTGAGCCTGTGACATCTGTATGTTTGCATTATTAGACATTGCAGCATCTTAAGCCTTTTCTCATGTAG</genome_strand>
        <mrna_strand>CAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGGTGA-TGTGTAGTCAATTTGCTTTACCAATTGAGCCTGTGACATCTGTATNGTTGCATTATTAGACATTGCAGCATCTTAAGCC-TTTCTCATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306303" ref_strand="+" ref_description="SGN-E306303 [cLEX-13-A22]">
      <seq>caagcccgaaaatgcgagaaagacgaaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaagagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13810" stop="15053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14110" g_stop="14295" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14753" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="546" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E306303" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14110" e_stop="14295"/>
          <exon e_start="14394" e_stop="14753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTG</genome_strand>
        <mrna_strand>CAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAAGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343814" ref_strand="+" ref_description="SGN-E343814 [cTOF-12-O7]">
      <seq>aaaagtctgagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13835" stop="15036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14135" g_stop="14295" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14737" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="505" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E343814" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14135" e_stop="14295"/>
          <exon e_start="14394" e_stop="14737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAA</genome_strand>
        <mrna_strand>AAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716241" ref_strand="+" ref_description="SGN-E716241 [FB16CA06]">
      <seq>gagaagcttaaggtcaagaaggccatcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgtgtagtcaatttgctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13843" stop="15202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14143" g_stop="14295" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14902" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="662" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E716241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14143" e_stop="14295"/>
          <exon e_start="14394" e_stop="14902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTAC</genome_strand>
        <mrna_strand>GAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370645" ref_strand="-" ref_description="SGN-E370645 [TUS-27-I14]">
      <seq>atcgagaaaggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgaaaaaaaaaaaaaaaaaactcggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13867" stop="15180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14167" g_stop="14295" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14879" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="615" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="634"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E370645" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370645" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14167" e_stop="14295"/>
          <exon e_start="14394" e_stop="14879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTG</genome_strand>
        <mrna_strand>ATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577633" ref_strand="-" ref_description="SGN-E577633 [LE15BA08]">
      <seq>aggtaacatggacggcgctagaatttatgctgaaaacgccatccgcaagcgcagcgaacagatgaactatctccgtctctcctctcgccttgacgccgttgtggctcgtctggatactcaggcgaagatgacgacaatcagcaagtcaatgtcctcgatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgtgtagtcaatttgctttaccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13875" stop="15205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14175" g_stop="14295" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14394" g_stop="14904" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="632" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="645"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E577633" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577633" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14175" e_stop="14295"/>
          <exon e_start="14394" e_stop="14904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAGGTAAAGATCGATACAACATTTAAGCAGTGACGCAGATGCTTCCACATCTCGATTCTGTACGTATAACTAGTAAATTGTGATATATTTTGTGTACGCAGGCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCA</genome_strand>
        <mrna_strand>AGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG..................................................................................................GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270326" ref_strand="-" ref_description="SGN-E270326 [cLEM-1-P20]">
      <seq>gatcgtcaaatcactggagtcttcactcaacacagggaatctacagaaaatgtcagagacgatggattcattcgagcgtcagtttgtgaatatggaggttcaagctgaatttatggagagttctatggctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgaaaaaaaaaaaaaaaaaactcggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14129" stop="15180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14429" g_stop="14879" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="470"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E270326" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270326" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14429" e_stop="14879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTG</genome_strand>
        <mrna_strand>GATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346223" ref_strand="+" ref_description="SGN-E346223 [cTOF-23-O9]">
      <seq>ctggaagtacttccttatcgaccccagaggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgtgtagtcaatttgctttaccaattgagcctgtgacatctgtatgtttgcattattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14257" stop="15243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14557" g_stop="14942" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="396"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E346223" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14557" e_stop="14942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCAATTGAGCCTGTGACATCTGTATGTTTGCATTATTAGAC</genome_strand>
        <mrna_strand>CTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCAATTGAGCCTGTGACATCTGTATGTTTGCATTATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232213" ref_strand="+" ref_description="SGN-E232213 [cLEL-5-B21](-)">
      <seq>ggaccaggtgggcagcctgatgcaacaggtggctgatgactatggactcgaggtgtccgtggggcttccgcaagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgcgtagtcaatttgctttacccacccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14285" stop="15205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14585" g_stop="14904" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="325" polyA_stop="339"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E232213" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14585" e_stop="14904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCA</genome_strand>
        <mrna_strand>GGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGCGTAGTCAATTTGCTTTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347023" ref_strand="+" ref_description="SGN-E347023 [cTOF-25-K18]">
      <seq>caagcagcgggccatgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgtgtagtcaatttgctttaccaattgagcctgtgacatctgtatgtttgcattattagacattgcagcatcttaagccttttctcatgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14355" stop="15274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14655" g_stop="14973" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="320" polyA_stop="331"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E347023" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14655" e_stop="14973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCAATTGAGCCTGTGACATCTGTATGTTTGCATTATTAGACATTGCAGCATCTTAAGCCTTTTCTCATGTAG</genome_strand>
        <mrna_strand>CAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCAATTGAGCCTGTGACATCTGTATGTTTGCATTATTAGACATTGCAGCATCTTAAGCCTTTTCTCATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232569" ref_strand="+" ref_description="SGN-E232569 [cLEL-5-B21](-)">
      <seq>catgctatatcttctaaggacgaggagaaggtcagtgaggatgatctgtccaggcgtcttgccgagctcaaggcgcgtgggtaattgagaaactgaagattcttctgttaatatagaacctttggtattggtgtaatgtgatacagtatgtggagttttatctgttgcatacattaagattgaacacttctatgtacattttactctcttgtgattgtgtagtcaatttgctttaccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14367" stop="15205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14667" g_stop="14904" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="239" polyA_stop="256"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E232569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14667" e_stop="14904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCA</genome_strand>
        <mrna_strand>CATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390280" ref_strand="+" ref_description="SGN-E390280 [TUS-40-K21](-)">
      <seq>aatagctgtaaacgctcctcaacgatgacgatttcatcttcaacttcatcagaacaaaattcaaaaacagagcattttgatacccctgttgttcggaacagcccgattgttgacgccaatgggcctttcggctcgctactagcatcaaacgggccggagatagggaattttttaaatgttttgaatcctaacgggcccgattcgggctcagacgctgctgccgctcaaagtgggaatagtaataataatcatgaatttttgggtgaagattctaattgttggaatggtactaatggttgggctgatcttgctatttacaccccaggttcaacctttcagtaattaattaattaattaattacaatagattattagaactttgtattagtactactaatacttatgaaaatgcacttatctttttctaagcatgaatgttggaagtgttgtttgcggattgtatactattactagtagttttcgtatcagcttgtcgtgcatctcagttttttattaatacatgtactgagtgactcagttcatgtttacgaaaacttaatatttttactttgcatcaaactagttttgtttgggtaatgcttagtgtacgtacataattgtgtgtgatttgagatttcatgtatgttattccaagggaaatgataaattatgaaatttattacttttgttttttatactgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20591" stop="19289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20291" g_stop="19592" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="714"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E390280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20291" e_stop="19592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTTGGGTGAAGATTCTAATTGTTGGAATGGTACTAATGGTTGGGCTGATCTTGCTATTTACACCCCAGGTTCAACCTTTCAGTAATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTGGAAGTGTTGTTTGCGGATTGTATACTATTACTAGTAGTTTTCGTATCAGCTTGTCGTGCATCTCAGTTTTTTATTAATACATGTACTGAGTGACTCAGTTCATGTTTACGAAAACTTAATATTTTTACTTTGCATCAAACTAGTTTTGTTTGGGTAATGCTTAGTGTACGTACATAATTGTGTGTGATTTGAGATTTCATGTATGTTATTCCAAGGGAAATGATAAATTATGAAATTTATTACTTTTGTTTTTTATACTG</genome_strand>
        <mrna_strand>AATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTTGGGTGAAGATTCTAATTGTTGGAATGGTACTAATGGTTGGGCTGATCTTGCTATTTACACCCCAGGTTCAACCTTTCAGTAATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTGGAAGTGTTGTTTGCGGATTGTATACTATTACTAGTAGTTTTCGTATCAGCTTGTCGTGCATCTCAGTTTTTTATTAATACATGTACTGAGTGACTCAGTTCATGTTTACGAAAACTTAATATTTTTACTTTGCATCAAACTAGTTTTGTTTGGGTAATGCTTAGTGTACGTACATAATTGTGTGTGATTTGAGATTTCATGTATGTTATTCCAAGGGAAATGATAAATTATGAAATTTATTACTTTTGTTTTTTATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220124" ref_strand="+" ref_description="SGN-E220124 [cLEL-12-L4](-)">
      <seq>cgggcccgattcgggctcagacgctgctgccgctcaaagtgggaatagtataaataatcatgaatttttgggtgaagattctaattgttggaatggtactaatggttgggctgatcttgctatttacaccccaggttcaacctttcagtaattaattaattaattaattacaatagattattagaactttgtattagtactactaatacttatgaaaatgcacttatctttttctaagcatgaatgttggaagtgttgtttgcggattgtatactattactagtagttttcgtatcagcttgtcgtgcatctcagttttttattaatacatgtactgagtgactcagttcatgtttacgaaaacttaatatttttactttgcatcaaactagttttgtttgggtaatgcttagtgtacgtacataattgtgtgtgatttgagatttcatgtatgttattccaacggaaatgataaattatgaaatttattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20400" stop="19310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20100" g_stop="19610" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="507"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E220124" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20100" e_stop="19610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTTGGGTGAAGATTCTAATTGTTGGAATGGTACTAATGGTTGGGCTGATCTTGCTATTTACACCCCAGGTTCAACCTTTCAGTAATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTGGAAGTGTTGTTTGCGGATTGTATACTATTACTAGTAGTTTTCGTATCAGCTTGTCGTGCATCTCAGTTTTTTATTAATACATGTACTGAGTGACTCAGTTCATGTTTACGAAAACTTAATATTTTTACTTTGCATCAAACTAGTTTTGTTTGGGTAATGCTTAGTGTACGTACATAATTGTGTGTGATTTGAGATTTCATGTATGTTATTCCAAGGGAAATGATAAATTATGAAATTTATTA</genome_strand>
        <mrna_strand>CGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTATAAATAATCATGAATTTTTGGGTGAAGATTCTAATTGTTGGAATGGTACTAATGGTTGGGCTGATCTTGCTATTTACACCCCAGGTTCAACCTTTCAGTAATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTGGAAGTGTTGTTTGCGGATTGTATACTATTACTAGTAGTTTTCGTATCAGCTTGTCGTGCATCTCAGTTTTTTATTAATACATGTACTGAGTGACTCAGTTCATGTTTACGAAAACTTAATATTTTTACTTTGCATCAAACTAGTTTTGTTTGGGTAATGCTTAGTGTACGTACATAATTGTGTGTGATTTGAGATTTCATGTATGTTATTCCAACGGAAATGATAAATTATGAAATTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220518" ref_strand="+" ref_description="SGN-E220518 [cLEL-12-L4](-)">
      <seq>attaattaattaattaattacaatagattattagaactttgtattagtactactaatacttatgaaaatgcacttatctttttctaagcatgaatgttggaagtgttgtttccggattgtatactattactagtagttttcgtatcagcttgtcgtgcatctcagttttttattaatacatgtactgagtgactcagttcatgtttacgaaaacttaatatttttactttgcatcaaactagttttgtttgggtaatgcttagtgtacgtacataattgtgtgtgatttgagatttcatgtatgttattccaagggaaatgataaattatgaaatttattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20250" stop="19310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19950" g_stop="19610" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="357"/>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E220518" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19950" e_stop="19610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTGGAAGTGTTGTTTGCGGATTGTATACTATTACTAGTAGTTTTCGTATCAGCTTGTCGTGCATCTCAGTTTTTTATTAATACATGTACTGAGTGACTCAGTTCATGTTTACGAAAACTTAATATTTTTACTTTGCATCAAACTAGTTTTGTTTGGGTAATGCTTAGTGTACGTACATAATTGTGTGTGATTTGAGATTTCATGTATGTTATTCCAAGGGAAATGATAAATTATGAAATTTATTA</genome_strand>
        <mrna_strand>ATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTGGAAGTGTTGTTTCCGGATTGTATACTATTACTAGTAGTTTTCGTATCAGCTTGTCGTGCATCTCAGTTTTTTATTAATACATGTACTGAGTGACTCAGTTCATGTTTACGAAAACTTAATATTTTTACTTTGCATCAAACTAGTTTTGTTTGGGTAATGCTTAGTGTACGTACATAATTGTGTGTGATTTGAGATTTCATGTATGTTATTCCAAGGGAAATGATAAATTATGAAATTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317474" ref_strand="+" ref_description="SGN-E317474 [cTOA-28-L14]">
      <seq>tgttctctcaataagcctaaaaaacagagcaaacagaagctcacaatatgcaagatccatcatcaatatattcacagatcaatcctcagttcccagatcaacaagtcctgaaatgccctagatgtgattcaatcaacacgaagttttgttactacaacaattacaatctttctcagccacgccatttttgtaagaattgtaaaaggtattggactaaaggaggtattttgaggaatattccagttggtggaagctctcgtaagaacacaaaacgatcttcttcgaatagctgtaaacgctcctcaacgatgacgatttcatcttcaacttcatcagaacaaaattcaaaaacagagcattttgatacccctgttgttcggaacagcccgattgttgacgccaatgggcctttcggctcgctactagcatcaaacgggccggagatagggaattttttaaatgttttgaatcctaacgggcccgattcgggctcagacgctgctgccgctcaaagtgggaatagtaataataatcatgaatttttgggtgaagattctaattgttggaatggtactaatggttgggctgatcttgctatttacaccccaggttcaacctttcagtaattaattaattaattaattacaatagattattagaactttgtattagtactactaatacttatgaaaatgcacttatctttttctaagcatgaatgttnggagtgttgnttgcggattgtatactattactagtagttttcgtatcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20875" stop="19500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20575" g_stop="19800" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E317474" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20575" e_stop="19800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTTGGGTGAAGATTCTAATTGTTGGAATGGTACTAATGGTTGGGCTGATCTTGCTATTTACACCCCAGGTTCAACCTTTCAGTAATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTGGAAGTGTTGTTTGCGGATTGTATACTATTACTAGTAGTTTTCGTATCAGCTT</genome_strand>
        <mrna_strand>TGTTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTTGGGTGAAGATTCTAATTGTTGGAATGGTACTAATGGTTGGGCTGATCTTGCTATTTACACCCCAGGTTCAACCTTTCAGTAATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTNGGAGTGTTGNTTGCGGATTGTATACTATTACTAGTAGTTTTCGTATCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390281" ref_strand="+" ref_description="SGN-E390281 [TUS-40-K21]">
      <seq>taacactctgttctctcaataagcctaaaaaacagagcaaacagaagctcacaatatgcaagatccatcatcaatatattcacagatcaatcctcagttcccagatcaacaagtcctgaaatgccctagatgtgattcaatcaacacgaagttttgttactacaacaattacaatctttctcagccacgccatttttgtaagaattgtaaaaggtattggactaaaggaggtattttgaggaatattccagttggtggaagctctcgtaagaacacaaaacgatcttcttcgaatagctgtaaacgctcctcaacgatgacgatttcatcttcaacttcatcagaacaaaattcaaaaacagagcattttgatacccctgttgttcggaacagcccgattgttgacgccaatgggcctttcggctcgctactagcatcaaacgggccggagatagggaattttttaaatgttttgaatcctaacgggcccgattcgggctcagacgctgctgccgctcaaagtgggaatagtaataataatcatgaatttttgggtgaagattctaattgttggaatggtactaatggttgggctgatcttgctatttacaccccaggttcaacctttcagtaattaattaattaattaattacaatagattattagaactttgtattagtactactaatacttatgaaaatgcacttatctttttctaagcatgaatggtgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20883" stop="19549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20583" g_stop="19848" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E390281" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20583" e_stop="19848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTCTGTTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTTGGGTGAAGATTCTAATTGTTGGAATGGTACTAATGGTTGGGCTGATCTTGCTATTTACACCCCAGGTTCAACCTTTCAGTAATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTGGAAG</genome_strand>
        <mrna_strand>TAACACTCTGTTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTTGGGTGAAGATTCTAATTGTTGGAATGGTACTAATGGTTGGGCTGATCTTGCTATTTACACCCCAGGTTCAACCTTTCAGTAATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGGTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313268" ref_strand="+" ref_description="SGN-E313268 [cTOA-18-J11]">
      <seq>aacactctgttctctcaataagcctaaaaaacagagcaaacagaagctcacaatatgcaagatccatcatcaatatattcacagatcaatcctcagttcccagatcaacaagtcctgaaatgccctagatgtgattcaatcaacacgaagttttgttactacaacaattacaatctttctcagccacgccatttttgtaagaattgtaaaaggtattggactaaaggaggtattttgaggaatattccagttggtggaagctctcgtaagaacacaaaacgatcttcttcgaatagctgtaaacgctcctcaacgatgacgatttcatcttcaacttcatcagaacaaaattcaaaaacagagcattttgatacccctgttgttcggaacagcccgattgttgacgccaatgggcctttcggctcgctactagcatcaaacgggccggagatagggaattttttaaatgttttgaatcctaacgggcccgattcgggctcagacgctgctgccgctcaaagtgggaatagtaataataatcatgaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20882" stop="19732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20582" g_stop="20032" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E313268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20582" e_stop="20032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCTGTTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTT</genome_strand>
        <mrna_strand>AACACTCTGTTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313920" ref_strand="+" ref_description="SGN-E313920 [cTOA-19-A21]">
      <seq>aacactctgttctctcaataagcctaaaaaacagagcaaacagaagctcacaatatgcaagatccatcatcaatatattcacagatcaatcctcagttcccagatcaacaagtcctgaaatgccctagatgtgattcaatcaacacgaagttttgttactacaacaattacaatctttctcagccacgccatttttgtaagaattgtaaaaggtattggactaaaggaggtattttgaggaatattccagttggtggaagctctcgtaagaacacaaaacgatcttcttcgaatagctgtaaacgctcctcaacgatgacgatttcatcttcaacttcatcagaacaaaattcaaaaacagagcattttgatacccctgttgttcggaacagcccgattgttgacgccaatgggcctttcggctcgctactagcatcaaacgggccggagatagggaattttttaaatgttttgaatcctaacgggcccgattcgggctcagacgctgctgccgctcaaagtgggaatagtaataataatcatgaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20882" stop="19732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20582" g_stop="20032" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E313920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20582" e_stop="20032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCTGTTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTT</genome_strand>
        <mrna_strand>AACACTCTGTTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366450" ref_strand="+" ref_description="SGN-E366450 [cLPT-1-N24]">
      <seq>aataacactctgttctctctcaataagcctaaaaaacagagcaaacagaagcttacaatatgcaagatccatcatcaatatattcacagatcaatcatcagttcccagatcaacaagtcttgaaatgccctagatgtgattcaatcaacacaaagttttgttactacaacaattacaatctttctcagccacgccatttttgtaagaattgtaaaaggtattggactaaaggaggtattttgaggaatattccggttgggggaagctctcgtgagaacacaaaacgatcttcttcgaatagctgtaaacgctcgacgaattcatattcaacttggtcagaacaaaattcaaaaacagagcattttgatacccctgttgttcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20885" stop="19895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20585" g_stop="20195" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E366450" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20585" e_stop="20195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACACTCTGTTCT--CTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGA</genome_strand>
        <mrna_strand>AATAACACTCTGTTCTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTTACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCATCAGTTCCCAGATCAACAAGTCTTGAAATGCCCTAGATGTGATTCAATCAACACAAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCGGTTGGGGGAAGCTCTCGTGAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACG---CT---C---GACGAATTCATATTCAACTTGGTCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393461" ref_strand="+" ref_description="SGN-E393461 [TUS-38-C24](-)">
      <seq>ccaactcggggttttaccatttataaaaaacagaatccatgccggcatatattacaagtttttaatgtcatagctcaaagaatggtcaatttagtaactcacttgtcaacaacccaacgttcttgtttttttcctaccttcacccttttcaagatttccaatgtctttatagttctcccctcaagcaaaactgttagatatgcagaaattatcactagatgtaaggtaaatgctgttttacttcaatcctgctggaaaagacctgctggctttactttattgggtagaagtattttttgtaggataatttgatgtttttttttatttgctatagattatcgaactaaagtagctttgttttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25272" stop="9295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25002" g_stop="24618" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E393461" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25002" e_stop="24618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTCGAGGTTCTACCATTTCTCACGTGCAGAATCCATGCCGGCATATATTACAAGTTCTTAATGTCATAGCTCAAAGAATGGTCAATTTAGTAACTCACTTGTCAACAACCCAACGTTCTTGTTCTCTTCCTACCTTCACCCTTCTCAAGATCTCCAATGTCTTTATAGTTCTCCCCTCAAGCAAAACTGTTAGATATGCAGAAATTATCACTAGATGTAAGGTAAATGCTGTTTTACTTCAATCCTGCTGGAAAAGACCTGCTGGCTTTACTTTATTGGGTAGAAGTATTTTTTGTAGGATAATTTGATGTTTTTTTTTCTTTGCTATAGATTATCGAACTAAAGTAGCTTTGTTTTCTTGTCCTGTAAAAGTTCAAGGGA</genome_strand>
        <mrna_strand>CCAACTCGGGGTTTTACCATTTATAAAAAACAGAATCCATGCCGGCATATATTACAAGTTTTTAATGTCATAGCTCAAAGAATGGTCAATTTAGTAACTCACTTGTCAACAACCCAACGTTCTTGTTTTTTTCCTACCTTCACCCTTTTCAAGATTTCCAATGTCTTTATAGTTCTCCCCTCAAGCAAAACTGTTAGATATGCAGAAATTATCACTAGATGTAAGGTAAATGCTGTTTTACTTCAATCCTGCTGGAAAAGACCTGCTGGCTTTACTTTATTGGGTAGAAGTATTTTTTGTAGGATAATTTGATGTTTTTTTTTATTTGCTATAGATTATCGAACTAAAGTAGCTTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207439" ref_strand="+" ref_description="SGN-E207439 [cLEC-36-A9]">
      <seq>tgaggtgataacttcagctgaatttcaccctactcactgtaacatattggcttatagtagttcaagaggatcaatacgtttggtagatatgcggcagtcagcattgtgcgactcgcactctaagttgtttgaggagcaggaaactcctggctcaaggtccttttttaccgagataattgcttcaatttcagatataaaatttgcaaaggctggaagatacatactcagtcgtgactacatgaccctgaagctatgggatataaacatggattctggtccagtttcaacttttcatgttcatgaacatttgagaccaaagctgtgtgatttatatgagaatgattccatctttgataaattcgagtgtagccttagtggtgatggttctcgagtagcaactggatcttatagcaatctttttcgtgtgttcggttgtgctccgggaagcgcagaagcgactacattagaagcgagcgaaaaccccaggagacaagtccagaccccttcgaggccttccaggtccttgagcagcagtataacccgtgttgtcaggagaggatcacaaagtcctgtggctgatgccaatggaaactcatttgatttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27986" stop="24864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27822" g_stop="27821" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27820" i_stop="27686" i_length="135">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27685" g_stop="27562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="126" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27561" i_stop="27328" i_length="234">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27327" g_stop="27204" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="250" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27203" i_stop="25904" i_length="1300">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25903" g_stop="25835" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="319" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25834" i_stop="25744" i_length="91">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25743" g_stop="25652" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="411" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25651" i_stop="25568" i_length="84">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25567" g_stop="25493" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="486" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25492" i_stop="25403" i_length="90">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25402" g_stop="25332" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="557" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25331" i_stop="25213" i_length="119">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25212" g_stop="25164" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="606" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E207439" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27822" e_stop="27821"/>
          <exon e_start="27685" e_stop="27562"/>
          <exon e_start="27327" e_stop="27204"/>
          <exon e_start="25903" e_stop="25835"/>
          <exon e_start="25743" e_stop="25652"/>
          <exon e_start="25567" e_stop="25493"/>
          <exon e_start="25402" e_stop="25332"/>
          <exon e_start="25212" e_stop="25164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAGTTTTTGATATGTCGATCTCAACTTCCATTTTGGTGTGGTTACATCACATGATAGTTTTATTAGCTTATTTATTTATCGAAACACTTGTTTCAGTGAATGCTCAAATGTGCTTAGATGTTTCTTATTGCAGAGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTTGTAAGTATTACATTTACTTAACTTATAGTTTTTTGCTGATGGGTGTTTTTCTTTTTAATACTGCAAAACAAAACAAGATATCCACCTGCAAAGAAATATTCTGGAAGCGGGCTAGTTTCTTAACAGTATAAGGGGCCCTGGAAAATGATATTCTTCAAGTTGAGAGATACTTATTTTCTAATTACTTTCTCATAGCTTTTATAAGTTGAAATGTTGGTTTTCTCCTATACACAGGTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAGGTTGGTCTTCCACTCTTTTCTGTAGGTCTAAACCTTTTCAATTGACTAATATGAGAGATGTGCAACGTTGTGTATCATATTCTTGACTCTCTTAAGTACTGTCTGATATGTATAAGTAAGGAAAGCAGACTTCTCAGAAGGTTATATGACTCTAGTCCATGGGCAAAGTCCATTGCATCTCTAGGTCATATTCCTGGTAATTGGTTTAGGAACATGTTTAATGAATGAGCTCTGTCAAATTCTTCATTGACGGAGTGTGATCTCTTTTGCAAGTATACCAGCGTTTGTGGTGCTTCTCTTATCTTCTCTGTTCAGTTTTTGCAAGCAAGTGTTGTTTTCACAAAATGGTACCAAACGGGTACTGCAAAACTTTCAAGATTTTACATCTAGAAAGAGTTCAAAAAAGATACTCTACACCATATACAAAACTTTGGTTACATCACTAAATAAAACCCCAAGACATCCATCTTAAAGTTGTAAAGCCGATAGTGCCTCTGAGACCCCTTCAGAGCATTTTCTGTTCTTATCTTTTCATAGCGACCACATAATGCATAGATGAGCTGTCTAAGAAAATGCCTTACATTCTTCATTATGAATTGGAGAGCCTCTCCAATTGCAAAATAGTTACTCACAGTTCTTTCCATTGCCTGATGGAAAGGTCGTGTTCATTAGTTCATTAGTCGTGTCAGATTTACAAACAAATAATTGACAGATTCTTCAATCATTCAGCGCATGAACCACTTATTACAATACATTTTGACCCTTCTATTATCATTGTTATCTGTAATTGATTGGCATGCTTCTTTAATCCTTGTGTTTCCCTGCGGATAACTTTGCAATTGAGTTTTTTTTTTCTGCTAAGTCTCATCTTTCAAAAAATCTTAATTACATACAAACTCTCTTAGTTTCATTAGGTTAGGCTCCATTTGCATCTTATGTTCGTGAGTCTGGAAAAGCTTTTTTGAACTTAAAAGTGCAGTTTCTTCATGTTTTTTTGATGCTTTTGTAGTTGCTGGCAAGAATATGCATATGTTACACCATAAGGGTAACTATTATATTCAAGTTCCTGATAGATCTCTACTTTCTCTCAGCTTTTGGTCACGTACGCCTACTCGTCAATTTTTTTTTCATTTTGAGGAAAGAAAGTATGACAAGAAGTGGGGGGGGGGGGTATAGAGCTGGTTTCAGTATGAATTTGCTGGTCTCTTTATTCAGTGATTCTTTTTTCCTGACTAGGTGAGTCTTAACCTAATTATATGTAAGATTGCTCCTTTATTACTGAAACTCACCTTACCTGCAGCTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAGGTGAATTGCTTTCTCCCAAAGTTGTGTGTTTGTGCTTGATAGTTTCTCATTTGTATCAGCTGATTAATAGTTTTATTGTATCGCTGTGCAGCTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAGGTGTGTAGACTTCTCTTTTTCTTTCTTTCATTTTGTTTCTCCACCAATGTGATTTATTTTCAGCTAATAATTCTTCTATTTCAGCAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGACTACATTAGAAGCGAGCAAAAACCCCAGGTACTTGTATTAAAAGTTTTCAGCATGTAAATTTATATGGACATGTAGTAATGTCATGGCTTTTGGTGCCTTTTGATTATTCTCTCTTAGGAGACAAGTCCAGACCCCTTCGAGGCCTTCCAGGTCCTTGAGCAGCAGTATAACCCGTGTTGTCAGGAGAGGTATGCTTTTCTAGATACAAATACATCCTTTCTTCCTATATCTGTGTATGCTCGTTATCTGTATTTGCAATTTTTCCCACCACTCTAAAATATAGCTGAATCTTTATGATGCATTGCAGGATCAGAAAGTCCTGGGGCTGATGCCAATGGAAACTCATTTGATTTCAC</genome_strand>
        <mrna_strand>TG.......................................................................................................................................AGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTT..........................................................................................................................................................................................................................................GTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCATGTTCATGAACATTTGAGACCAAAG...........................................................................................CTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTAGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAG....................................................................................CAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGACTACATTAGAAGCGAGCGAAAACCCCAG..........................................................................................GAGACAAGTCCAGACCCCTTCGAGGCCTTCCAGGTCCTTGAGCAGCAGTATAACCCGTGTTGTCAGGAGAG.......................................................................................................................GATCACAAAGTCCTGTGGCTGATGCCAATGGAAACTCATTTGATTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396761" ref_strand="+" ref_description="SGN-E396761 [TUS-43-B12]">
      <seq>ctgaggtgataacttcagctgaatttcaccctactcactgtaacatattggcttatagtagttcaagaggatcaaaacctttggtatatatgcggcagtcagcattgtgcgactcccactctaagttgtttgaggagcaagaaactcctggctcaaggtccttttttaccgagataattgcttcaatttcacatatgaaatttgcaaaagctggaagatacatactcaatcgtgactacatgaccctgaagctatgggatataaacatggattctggtccagtttcagcttttcaggttcatgaacatttgagaccaaagctgtgtgatttatatgacaatgattccatctttgataaattcgagtgtagccttagtggtgatggttctcgagtagcaaatggatcttatagcaatcttattcgtgtgttcggttgtgctccgggaagcgcagaagcgactactttagaagcgagcaaaaaccccaggagacaagtccagaccccttcgaggccttccaggtccttgagcagcagtataacccgtgttgtcaggagaggatcaaaaagtcctggggctgatgccaatggaaactcatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27988" stop="24870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27823" g_stop="27821" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27820" i_stop="27686" i_length="135">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27685" g_stop="27562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="127" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27561" i_stop="27328" i_length="234">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27327" g_stop="27204" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="251" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27203" i_stop="25904" i_length="1300">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25903" g_stop="25835" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="320" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25834" i_stop="25744" i_length="91">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25743" g_stop="25652" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="412" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25651" i_stop="25568" i_length="84">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25567" g_stop="25493" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="487" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25492" i_stop="25403" i_length="90">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25402" g_stop="25332" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="558" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25331" i_stop="25213" i_length="119">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25212" g_stop="25170" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="601" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E396761" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27823" e_stop="27821"/>
          <exon e_start="27685" e_stop="27562"/>
          <exon e_start="27327" e_stop="27204"/>
          <exon e_start="25903" e_stop="25835"/>
          <exon e_start="25743" e_stop="25652"/>
          <exon e_start="25567" e_stop="25493"/>
          <exon e_start="25402" e_stop="25332"/>
          <exon e_start="25212" e_stop="25170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGAGTTTTTGATATGTCGATCTCAACTTCCATTTTGGTGTGGTTACATCACATGATAGTTTTATTAGCTTATTTATTTATCGAAACACTTGTTTCAGTGAATGCTCAAATGTGCTTAGATGTTTCTTATTGCAGAGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTTGTAAGTATTACATTTACTTAACTTATAGTTTTTTGCTGATGGGTGTTTTTCTTTTTAATACTGCAAAACAAAACAAGATATCCACCTGCAAAGAAATATTCTGGAAGCGGGCTAGTTTCTTAACAGTATAAGGGGCCCTGGAAAATGATATTCTTCAAGTTGAGAGATACTTATTTTCTAATTACTTTCTCATAGCTTTTATAAGTTGAAATGTTGGTTTTCTCCTATACACAGGTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAGGTTGGTCTTCCACTCTTTTCTGTAGGTCTAAACCTTTTCAATTGACTAATATGAGAGATGTGCAACGTTGTGTATCATATTCTTGACTCTCTTAAGTACTGTCTGATATGTATAAGTAAGGAAAGCAGACTTCTCAGAAGGTTATATGACTCTAGTCCATGGGCAAAGTCCATTGCATCTCTAGGTCATATTCCTGGTAATTGGTTTAGGAACATGTTTAATGAATGAGCTCTGTCAAATTCTTCATTGACGGAGTGTGATCTCTTTTGCAAGTATACCAGCGTTTGTGGTGCTTCTCTTATCTTCTCTGTTCAGTTTTTGCAAGCAAGTGTTGTTTTCACAAAATGGTACCAAACGGGTACTGCAAAACTTTCAAGATTTTACATCTAGAAAGAGTTCAAAAAAGATACTCTACACCATATACAAAACTTTGGTTACATCACTAAATAAAACCCCAAGACATCCATCTTAAAGTTGTAAAGCCGATAGTGCCTCTGAGACCCCTTCAGAGCATTTTCTGTTCTTATCTTTTCATAGCGACCACATAATGCATAGATGAGCTGTCTAAGAAAATGCCTTACATTCTTCATTATGAATTGGAGAGCCTCTCCAATTGCAAAATAGTTACTCACAGTTCTTTCCATTGCCTGATGGAAAGGTCGTGTTCATTAGTTCATTAGTCGTGTCAGATTTACAAACAAATAATTGACAGATTCTTCAATCATTCAGCGCATGAACCACTTATTACAATACATTTTGACCCTTCTATTATCATTGTTATCTGTAATTGATTGGCATGCTTCTTTAATCCTTGTGTTTCCCTGCGGATAACTTTGCAATTGAGTTTTTTTTTTCTGCTAAGTCTCATCTTTCAAAAAATCTTAATTACATACAAACTCTCTTAGTTTCATTAGGTTAGGCTCCATTTGCATCTTATGTTCGTGAGTCTGGAAAAGCTTTTTTGAACTTAAAAGTGCAGTTTCTTCATGTTTTTTTGATGCTTTTGTAGTTGCTGGCAAGAATATGCATATGTTACACCATAAGGGTAACTATTATATTCAAGTTCCTGATAGATCTCTACTTTCTCTCAGCTTTTGGTCACGTACGCCTACTCGTCAATTTTTTTTTCATTTTGAGGAAAGAAAGTATGACAAGAAGTGGGGGGGGGGGGTATAGAGCTGGTTTCAGTATGAATTTGCTGGTCTCTTTATTCAGTGATTCTTTTTTCCTGACTAGGTGAGTCTTAACCTAATTATATGTAAGATTGCTCCTTTATTACTGAAACTCACCTTACCTGCAGCTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAGGTGAATTGCTTTCTCCCAAAGTTGTGTGTTTGTGCTTGATAGTTTCTCATTTGTATCAGCTGATTAATAGTTTTATTGTATCGCTGTGCAGCTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAGGTGTGTAGACTTCTCTTTTTCTTTCTTTCATTTTGTTTCTCCACCAATGTGATTTATTTTCAGCTAATAATTCTTCTATTTCAGCAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGACTACATTAGAAGCGAGCAAAAACCCCAGGTACTTGTATTAAAAGTTTTCAGCATGTAAATTTATATGGACATGTAGTAATGTCATGGCTTTTGGTGCCTTTTGATTATTCTCTCTTAGGAGACAAGTCCAGACCCCTTCGAGGCCTTCCAGGTCCTTGAGCAGCAGTATAACCCGTGTTGTCAGGAGAGGTATGCTTTTCTAGATACAAATACATCCTTTCTTCCTATATCTGTGTATGCTCGTTATCTGTATTTGCAATTTTTCCCACCACTCTAAAATATAGCTGAATCTTTATGATGCATTGCAGGATCAGAAAGTCCTGGGGCTGATGCCAATGGAAACTCATTTGA</genome_strand>
        <mrna_strand>CTG.......................................................................................................................................AGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAAAACCTTTGGTATATATGCGGCAGTCAGCATTGTGCGACTCCCACTCTAAGTT..........................................................................................................................................................................................................................................GTTTGAGGAGCAAGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCACATATGAAATTTGCAAAAGCTGGAAGATACATACTCAATCGTGACTACATGACCCTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGATATAAACATGGATTCTGGTCCAGTTTCAGCTTTTCAGGTTCATGAACATTTGAGACCAAAG...........................................................................................CTGTGTGATTTATATGACAATGATTCCATCTTTGATAAATTCGAGTGTAGCCTTAGTGGTGATGGTTCTCGAGTAGCAAATGGATCTTATAG....................................................................................CAATCTTATTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGACTACTTTAGAAGCGAGCAAAAACCCCAG..........................................................................................GAGACAAGTCCAGACCCCTTCGAGGCCTTCCAGGTCCTTGAGCAGCAGTATAACCCGTGTTGTCAGGAGAG.......................................................................................................................GATCAAAAAGTCCTGGGGCTGATGCCAATGGAAACTCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266529" ref_strand="+" ref_description="SGN-E266529 [cLEI-5-M22]">
      <seq>ggaacttgcttataagcaatcaaagtttcaatattattgatgtcaagccaacaaatatggaagatctaactgaggtgataacttcagctgaatttcaccctactcactgtaacatattggcttatagtagttcaagaggatcaatacgtttggtagatatgcggcagtcagcattgtgcgactcgcactctaagttgtttgaggagcaggaaactcctggctcaaggtcctttttttaccgagataattgcttcaatttcagatataaaatttgcaaaggctggaagatacatactcagtcgtgactacatgaccctgaagctatgggatataaacatggattctggtccagtttcaacttttcaggttcatgaacatttgagaccaaagctgtgtgatttatatgagaatgattccatctttgataaattcgagtgttgccttagtggtgatggttctcgagtagcaactggatcttatagcaatctttttcgtgtgttcggttgtgctccgggaagcgcagaagcgactacattagaagcgagcaaaaaccccaggagacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28192" stop="25192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27892" g_stop="27821" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27820" i_stop="27686" i_length="135">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27685" g_stop="27562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="196" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27561" i_stop="27328" i_length="234">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27327" g_stop="27204" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="321" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27203" i_stop="25904" i_length="1300">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25903" g_stop="25835" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="390" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25834" i_stop="25744" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25743" g_stop="25652" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="482" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25651" i_stop="25568" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25567" g_stop="25493" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="557" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25492" i_stop="25403" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25402" g_stop="25394" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="566" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E266529" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27892" e_stop="27821"/>
          <exon e_start="27685" e_stop="27562"/>
          <exon e_start="27327" e_stop="27204"/>
          <exon e_start="25903" e_stop="25835"/>
          <exon e_start="25743" e_stop="25652"/>
          <exon e_start="25567" e_stop="25493"/>
          <exon e_start="25402" e_stop="25394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTGCAAATAAGCAATCAAAGTTTCAATATTATTGATGTCAAGCCAACAAATATGGAAGATCTAACTGGTGAGTTTTTGATATGTCGATCTCAACTTCCATTTTGGTGTGGTTACATCACATGATAGTTTTATTAGCTTATTTATTTATCGAAACACTTGTTTCAGTGAATGCTCAAATGTGCTTAGATGTTTCTTATTGCAGAGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTTGTAAGTATTACATTTACTTAACTTATAGTTTTTTGCTGATGGGTGTTTTTCTTTTTAATACTGCAAAACAAAACAAGATATCCACCTGCAAAGAAATATTCTGGAAGCGGGCTAGTTTCTTAACAGTATAAGGGGCCCTGGAAAATGATATTCTTCAAGTTGAGAGATACTTATTTTCTAATTACTTTCTCATAGCTTTTATAAGTTGAAATGTTGGTTTTCTCCTATACACAGGTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCC-TTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAGGTTGGTCTTCCACTCTTTTCTGTAGGTCTAAACCTTTTCAATTGACTAATATGAGAGATGTGCAACGTTGTGTATCATATTCTTGACTCTCTTAAGTACTGTCTGATATGTATAAGTAAGGAAAGCAGACTTCTCAGAAGGTTATATGACTCTAGTCCATGGGCAAAGTCCATTGCATCTCTAGGTCATATTCCTGGTAATTGGTTTAGGAACATGTTTAATGAATGAGCTCTGTCAAATTCTTCATTGACGGAGTGTGATCTCTTTTGCAAGTATACCAGCGTTTGTGGTGCTTCTCTTATCTTCTCTGTTCAGTTTTTGCAAGCAAGTGTTGTTTTCACAAAATGGTACCAAACGGGTACTGCAAAACTTTCAAGATTTTACATCTAGAAAGAGTTCAAAAAAGATACTCTACACCATATACAAAACTTTGGTTACATCACTAAATAAAACCCCAAGACATCCATCTTAAAGTTGTAAAGCCGATAGTGCCTCTGAGACCCCTTCAGAGCATTTTCTGTTCTTATCTTTTCATAGCGACCACATAATGCATAGATGAGCTGTCTAAGAAAATGCCTTACATTCTTCATTATGAATTGGAGAGCCTCTCCAATTGCAAAATAGTTACTCACAGTTCTTTCCATTGCCTGATGGAAAGGTCGTGTTCATTAGTTCATTAGTCGTGTCAGATTTACAAACAAATAATTGACAGATTCTTCAATCATTCAGCGCATGAACCACTTATTACAATACATTTTGACCCTTCTATTATCATTGTTATCTGTAATTGATTGGCATGCTTCTTTAATCCTTGTGTTTCCCTGCGGATAACTTTGCAATTGAGTTTTTTTTTTCTGCTAAGTCTCATCTTTCAAAAAATCTTAATTACATACAAACTCTCTTAGTTTCATTAGGTTAGGCTCCATTTGCATCTTATGTTCGTGAGTCTGGAAAAGCTTTTTTGAACTTAAAAGTGCAGTTTCTTCATGTTTTTTTGATGCTTTTGTAGTTGCTGGCAAGAATATGCATATGTTACACCATAAGGGTAACTATTATATTCAAGTTCCTGATAGATCTCTACTTTCTCTCAGCTTTTGGTCACGTACGCCTACTCGTCAATTTTTTTTTCATTTTGAGGAAAGAAAGTATGACAAGAAGTGGGGGGGGGGGGTATAGAGCTGGTTTCAGTATGAATTTGCTGGTCTCTTTATTCAGTGATTCTTTTTTCCTGACTAGGTGAGTCTTAACCTAATTATATGTAAGATTGCTCCTTTATTACTGAAACTCACCTTACCTGCAGCTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAGGTGAATTGCTTTCTCCCAAAGTTGTGTGTTTGTGCTTGATAGTTTCTCATTTGTATCAGCTGATTAATAGTTTTATTGTATCGCTGTGCAGCTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAGGTGTGTAGACTTCTCTTTTTCTTTCTTTCATTTTGTTTCTCCACCAATGTGATTTATTTTCAGCTAATAATTCTTCTATTTCAGCAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGACTACATTAGAAGCGAGCAAAAACCCCAGGTACTTGTATTAAAAGTTTTCAGCATGTAAATTTATATGGACATGTAGTAATGTCATGGCTTTTGGTGCCTTTTGATTATTCTCTCTTAGGAGACAAGT</genome_strand>
        <mrna_strand>GGAACTTGCTTATAAGCAATCAAAGTTTCAATATTATTGATGTCAAGCCAACAAATATGGAAGATCTAACTG.......................................................................................................................................AGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTT..........................................................................................................................................................................................................................................GTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAG...........................................................................................CTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAG....................................................................................CAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGACTACATTAGAAGCGAGCAAAAACCCCAG..........................................................................................GAGACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378452" ref_strand="+" ref_description="SGN-E378452 [TUS-43-C13]">
      <seq>tgaggtgataacttcagctgattctcaccctactcactgtaacatattggcttatagtagttcaagaggatcaatacgtttggtagatatgcggcagtcagcattgtgcgactcgcactctaagttgtttgaggagcaggaaactcctggctcaaggtccttttttaccgagataattgcttcaatttcagatataaaatttgcaaaggctggaagatacatactcagtcgtgactacatgaccctgaagctatgggatataaacatggattctggtccagtttcaacttttcaggttcatgaacatttgagaccaaagctgtgtgatttatatgagaatgattccatctttgataaattcgagtgttgccttagtggtgatggttctcgagtagcaactggatcttatagcaatctttttcgtgtgttcggttgtgctccgggaagcgcagaagcgactacattagaagcgagcaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27986" stop="25197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27822" g_stop="27821" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27820" i_stop="27686" i_length="135">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27685" g_stop="27562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="126" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27561" i_stop="27328" i_length="234">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27327" g_stop="27204" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="250" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27203" i_stop="25904" i_length="1300">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25903" g_stop="25835" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="319" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25834" i_stop="25744" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25743" g_stop="25652" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="411" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25651" i_stop="25568" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25567" g_stop="25497" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="482" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E378452" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27822" e_stop="27821"/>
          <exon e_start="27685" e_stop="27562"/>
          <exon e_start="27327" e_stop="27204"/>
          <exon e_start="25903" e_stop="25835"/>
          <exon e_start="25743" e_stop="25652"/>
          <exon e_start="25567" e_stop="25497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAGTTTTTGATATGTCGATCTCAACTTCCATTTTGGTGTGGTTACATCACATGATAGTTTTATTAGCTTATTTATTTATCGAAACACTTGTTTCAGTGAATGCTCAAATGTGCTTAGATGTTTCTTATTGCAGAGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTTGTAAGTATTACATTTACTTAACTTATAGTTTTTTGCTGATGGGTGTTTTTCTTTTTAATACTGCAAAACAAAACAAGATATCCACCTGCAAAGAAATATTCTGGAAGCGGGCTAGTTTCTTAACAGTATAAGGGGCCCTGGAAAATGATATTCTTCAAGTTGAGAGATACTTATTTTCTAATTACTTTCTCATAGCTTTTATAAGTTGAAATGTTGGTTTTCTCCTATACACAGGTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAGGTTGGTCTTCCACTCTTTTCTGTAGGTCTAAACCTTTTCAATTGACTAATATGAGAGATGTGCAACGTTGTGTATCATATTCTTGACTCTCTTAAGTACTGTCTGATATGTATAAGTAAGGAAAGCAGACTTCTCAGAAGGTTATATGACTCTAGTCCATGGGCAAAGTCCATTGCATCTCTAGGTCATATTCCTGGTAATTGGTTTAGGAACATGTTTAATGAATGAGCTCTGTCAAATTCTTCATTGACGGAGTGTGATCTCTTTTGCAAGTATACCAGCGTTTGTGGTGCTTCTCTTATCTTCTCTGTTCAGTTTTTGCAAGCAAGTGTTGTTTTCACAAAATGGTACCAAACGGGTACTGCAAAACTTTCAAGATTTTACATCTAGAAAGAGTTCAAAAAAGATACTCTACACCATATACAAAACTTTGGTTACATCACTAAATAAAACCCCAAGACATCCATCTTAAAGTTGTAAAGCCGATAGTGCCTCTGAGACCCCTTCAGAGCATTTTCTGTTCTTATCTTTTCATAGCGACCACATAATGCATAGATGAGCTGTCTAAGAAAATGCCTTACATTCTTCATTATGAATTGGAGAGCCTCTCCAATTGCAAAATAGTTACTCACAGTTCTTTCCATTGCCTGATGGAAAGGTCGTGTTCATTAGTTCATTAGTCGTGTCAGATTTACAAACAAATAATTGACAGATTCTTCAATCATTCAGCGCATGAACCACTTATTACAATACATTTTGACCCTTCTATTATCATTGTTATCTGTAATTGATTGGCATGCTTCTTTAATCCTTGTGTTTCCCTGCGGATAACTTTGCAATTGAGTTTTTTTTTTCTGCTAAGTCTCATCTTTCAAAAAATCTTAATTACATACAAACTCTCTTAGTTTCATTAGGTTAGGCTCCATTTGCATCTTATGTTCGTGAGTCTGGAAAAGCTTTTTTGAACTTAAAAGTGCAGTTTCTTCATGTTTTTTTGATGCTTTTGTAGTTGCTGGCAAGAATATGCATATGTTACACCATAAGGGTAACTATTATATTCAAGTTCCTGATAGATCTCTACTTTCTCTCAGCTTTTGGTCACGTACGCCTACTCGTCAATTTTTTTTTCATTTTGAGGAAAGAAAGTATGACAAGAAGTGGGGGGGGGGGGTATAGAGCTGGTTTCAGTATGAATTTGCTGGTCTCTTTATTCAGTGATTCTTTTTTCCTGACTAGGTGAGTCTTAACCTAATTATATGTAAGATTGCTCCTTTATTACTGAAACTCACCTTACCTGCAGCTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAGGTGAATTGCTTTCTCCCAAAGTTGTGTGTTTGTGCTTGATAGTTTCTCATTTGTATCAGCTGATTAATAGTTTTATTGTATCGCTGTGCAGCTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAGGTGTGTAGACTTCTCTTTTTCTTTCTTTCATTTTGTTTCTCCACCAATGTGATTTATTTTCAGCTAATAATTCTTCTATTTCAGCAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGACTACATTAGAAGCGAGCAAAAACC</genome_strand>
        <mrna_strand>TG.......................................................................................................................................AGGTGATAACTTCAGCTGATTCTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTT..........................................................................................................................................................................................................................................GTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAG...........................................................................................CTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAG....................................................................................CAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGACTACATTAGAAGCGAGCAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249442" ref_strand="+" ref_description="SGN-E249442 [cLEF-50-H16]">
      <seq>ttatatcagctgatgatctccgtataaacctttggaacttgcaaataagcaatcaaagtttcaatattattgatgtcaagccaacaaatatggaagatctaactgaggtgataacttcagctgaatttcaccctactcactgtaacatattggcttatagtagttcaagaggatcaatacgtttggtagatatgcggcagtcagcattgtgcgactcgcactctaagttgtttgaggagcaggaaactcctggctcaaggtccttttttaccgagataattgcttcaatttcagatataaaatttgcaaaggctggaagatacatactcagtcgtgactacatgaccctgaagctatgggatataaacatggattctggtccagtttcaacttttcaggttcatgaacatttgagaccaaagctgtgtgatttatatgagaatgattccatctttgataaattcgagtgttgccttagtggtgatggttctcgagtagcaactggatcttataacaatctttttcgtgtgttcggttgtgctccgggaagcgcataagcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28225" stop="25220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27925" g_stop="27821" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27820" i_stop="27686" i_length="135">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27685" g_stop="27562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="229" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27561" i_stop="27328" i_length="234">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27327" g_stop="27204" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="353" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27203" i_stop="25904" i_length="1300">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25903" g_stop="25835" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="422" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25834" i_stop="25744" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25743" g_stop="25652" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="514" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25651" i_stop="25568" i_length="84">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25567" g_stop="25520" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="562" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E249442" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27925" e_stop="27821"/>
          <exon e_start="27685" e_stop="27562"/>
          <exon e_start="27327" e_stop="27204"/>
          <exon e_start="25903" e_stop="25835"/>
          <exon e_start="25743" e_stop="25652"/>
          <exon e_start="25567" e_stop="25520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATCAGCTGATGATCTCCGTATAAACCTTTGGAACTTGCAAATAAGCAATCAAAGTTTCAATATTATTGATGTCAAGCCAACAAATATGGAAGATCTAACTGGTGAGTTTTTGATATGTCGATCTCAACTTCCATTTTGGTGTGGTTACATCACATGATAGTTTTATTAGCTTATTTATTTATCGAAACACTTGTTTCAGTGAATGCTCAAATGTGCTTAGATGTTTCTTATTGCAGAGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTTGTAAGTATTACATTTACTTAACTTATAGTTTTTTGCTGATGGGTGTTTTTCTTTTTAATACTGCAAAACAAAACAAGATATCCACCTGCAAAGAAATATTCTGGAAGCGGGCTAGTTTCTTAACAGTATAAGGGGCCCTGGAAAATGATATTCTTCAAGTTGAGAGATACTTATTTTCTAATTACTTTCTCATAGCTTTTATAAGTTGAAATGTTGGTTTTCTCCTATACACAGGTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAGGTTGGTCTTCCACTCTTTTCTGTAGGTCTAAACCTTTTCAATTGACTAATATGAGAGATGTGCAACGTTGTGTATCATATTCTTGACTCTCTTAAGTACTGTCTGATATGTATAAGTAAGGAAAGCAGACTTCTCAGAAGGTTATATGACTCTAGTCCATGGGCAAAGTCCATTGCATCTCTAGGTCATATTCCTGGTAATTGGTTTAGGAACATGTTTAATGAATGAGCTCTGTCAAATTCTTCATTGACGGAGTGTGATCTCTTTTGCAAGTATACCAGCGTTTGTGGTGCTTCTCTTATCTTCTCTGTTCAGTTTTTGCAAGCAAGTGTTGTTTTCACAAAATGGTACCAAACGGGTACTGCAAAACTTTCAAGATTTTACATCTAGAAAGAGTTCAAAAAAGATACTCTACACCATATACAAAACTTTGGTTACATCACTAAATAAAACCCCAAGACATCCATCTTAAAGTTGTAAAGCCGATAGTGCCTCTGAGACCCCTTCAGAGCATTTTCTGTTCTTATCTTTTCATAGCGACCACATAATGCATAGATGAGCTGTCTAAGAAAATGCCTTACATTCTTCATTATGAATTGGAGAGCCTCTCCAATTGCAAAATAGTTACTCACAGTTCTTTCCATTGCCTGATGGAAAGGTCGTGTTCATTAGTTCATTAGTCGTGTCAGATTTACAAACAAATAATTGACAGATTCTTCAATCATTCAGCGCATGAACCACTTATTACAATACATTTTGACCCTTCTATTATCATTGTTATCTGTAATTGATTGGCATGCTTCTTTAATCCTTGTGTTTCCCTGCGGATAACTTTGCAATTGAGTTTTTTTTTTCTGCTAAGTCTCATCTTTCAAAAAATCTTAATTACATACAAACTCTCTTAGTTTCATTAGGTTAGGCTCCATTTGCATCTTATGTTCGTGAGTCTGGAAAAGCTTTTTTGAACTTAAAAGTGCAGTTTCTTCATGTTTTTTTGATGCTTTTGTAGTTGCTGGCAAGAATATGCATATGTTACACCATAAGGGTAACTATTATATTCAAGTTCCTGATAGATCTCTACTTTCTCTCAGCTTTTGGTCACGTACGCCTACTCGTCAATTTTTTTTTCATTTTGAGGAAAGAAAGTATGACAAGAAGTGGGGGGGGGGGGTATAGAGCTGGTTTCAGTATGAATTTGCTGGTCTCTTTATTCAGTGATTCTTTTTTCCTGACTAGGTGAGTCTTAACCTAATTATATGTAAGATTGCTCCTTTATTACTGAAACTCACCTTACCTGCAGCTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAGGTGAATTGCTTTCTCCCAAAGTTGTGTGTTTGTGCTTGATAGTTTCTCATTTGTATCAGCTGATTAATAGTTTTATTGTATCGCTGTGCAGCTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAGGTGTGTAGACTTCTCTTTTTCTTTCTTTCATTTTGTTTCTCCACCAATGTGATTTATTTTCAGCTAATAATTCTTCTATTTCAGCAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGAC</genome_strand>
        <mrna_strand>TTATATCAGCTGATGATCTCCGTATAAACCTTTGGAACTTGCAAATAAGCAATCAAAGTTTCAATATTATTGATGTCAAGCCAACAAATATGGAAGATCTAACTG.......................................................................................................................................AGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTT..........................................................................................................................................................................................................................................GTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAG...........................................................................................CTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAA....................................................................................CAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCATAAGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393193" ref_strand="+" ref_description="SGN-E393193 [TUS-38-E11]">
      <seq>tgcacatgctcatgactaccatattaattcgatatcaaataacagtgatggtgaaacattcatatcagccgatgatcttcgaataaacctttggaacttggaaataagtaatcaaagtttcaatattgtcgatgtcaagccatcaaatatggaagatcttactgaggtgataacatcagcagaattccatcctacacattgtaacacattagcttatagtagttcaaaaggatcagttcgtttaatagatttgcggcagtcagcattgtgtgactcacattctaaattgtttgaggaacaggaagcacctggttcaagatcttttttcaccgagataatcgcttcaatttcagatataaaatttgcgaaggatggaagatacatacttagtcgtgactacatgacccttaagctatgggacataaacatggattcaggtccagtttcaacattccaggttcatgaatatttaagaccaaagctttgtgacttatatgagaatgattccatctttgataaatttgagtgttgccttagtggtgatggttcgcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28245" stop="25370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28076" g_stop="28032" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.822"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28031" i_stop="27940" i_length="92">
            <donor d_prob="0.929" d_score="0.82"/>
            <acceptor a_prob="0.978" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27939" g_stop="27821" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="164" r_length="119" r_score="0.908"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27820" i_stop="27686" i_length="135">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27685" g_stop="27562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="288" r_length="124" r_score="0.855"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27561" i_stop="27328" i_length="234">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.988" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27327" g_stop="27204" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="412" r_length="124" r_score="0.903"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27203" i_stop="25904" i_length="1300">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.953" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25903" g_stop="25835" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="481" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25834" i_stop="25744" i_length="91">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.945" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25743" g_stop="25670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="555" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E393193" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28076" e_stop="28032"/>
          <exon e_start="27939" e_stop="27821"/>
          <exon e_start="27685" e_stop="27562"/>
          <exon e_start="27327" e_stop="27204"/>
          <exon e_start="25903" e_stop="25835"/>
          <exon e_start="25743" e_stop="25670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCATGCACATGACTATCATATCAATTCTATTTCAACTAACTGGTGAAGATCCATGCTACATTGAAATCTGATTTATCATGTCTTTTCTATTTGTGAGAACTTTATAGTAATGTTCATTTCTTTCTTCCACCTAGTGATGGGGAAACATTTATATCAGCTGATGATCTCCGTATAAACCTTTGGAACTTGCAAATAAGCAATCAAAGTTTCAATATTATTGATGTCAAGCCAACAAATATGGAAGATCTAACTGGTGAGTTTTTGATATGTCGATCTCAACTTCCATTTTGGTGTGGTTACATCACATGATAGTTTTATTAGCTTATTTATTTATCGAAACACTTGTTTCAGTGAATGCTCAAATGTGCTTAGATGTTTCTTATTGCAGAGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTTGTAAGTATTACATTTACTTAACTTATAGTTTTTTGCTGATGGGTGTTTTTCTTTTTAATACTGCAAAACAAAACAAGATATCCACCTGCAAAGAAATATTCTGGAAGCGGGCTAGTTTCTTAACAGTATAAGGGGCCCTGGAAAATGATATTCTTCAAGTTGAGAGATACTTATTTTCTAATTACTTTCTCATAGCTTTTATAAGTTGAAATGTTGGTTTTCTCCTATACACAGGTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAGGTTGGTCTTCCACTCTTTTCTGTAGGTCTAAACCTTTTCAATTGACTAATATGAGAGATGTGCAACGTTGTGTATCATATTCTTGACTCTCTTAAGTACTGTCTGATATGTATAAGTAAGGAAAGCAGACTTCTCAGAAGGTTATATGACTCTAGTCCATGGGCAAAGTCCATTGCATCTCTAGGTCATATTCCTGGTAATTGGTTTAGGAACATGTTTAATGAATGAGCTCTGTCAAATTCTTCATTGACGGAGTGTGATCTCTTTTGCAAGTATACCAGCGTTTGTGGTGCTTCTCTTATCTTCTCTGTTCAGTTTTTGCAAGCAAGTGTTGTTTTCACAAAATGGTACCAAACGGGTACTGCAAAACTTTCAAGATTTTACATCTAGAAAGAGTTCAAAAAAGATACTCTACACCATATACAAAACTTTGGTTACATCACTAAATAAAACCCCAAGACATCCATCTTAAAGTTGTAAAGCCGATAGTGCCTCTGAGACCCCTTCAGAGCATTTTCTGTTCTTATCTTTTCATAGCGACCACATAATGCATAGATGAGCTGTCTAAGAAAATGCCTTACATTCTTCATTATGAATTGGAGAGCCTCTCCAATTGCAAAATAGTTACTCACAGTTCTTTCCATTGCCTGATGGAAAGGTCGTGTTCATTAGTTCATTAGTCGTGTCAGATTTACAAACAAATAATTGACAGATTCTTCAATCATTCAGCGCATGAACCACTTATTACAATACATTTTGACCCTTCTATTATCATTGTTATCTGTAATTGATTGGCATGCTTCTTTAATCCTTGTGTTTCCCTGCGGATAACTTTGCAATTGAGTTTTTTTTTTCTGCTAAGTCTCATCTTTCAAAAAATCTTAATTACATACAAACTCTCTTAGTTTCATTAGGTTAGGCTCCATTTGCATCTTATGTTCGTGAGTCTGGAAAAGCTTTTTTGAACTTAAAAGTGCAGTTTCTTCATGTTTTTTTGATGCTTTTGTAGTTGCTGGCAAGAATATGCATATGTTACACCATAAGGGTAACTATTATATTCAAGTTCCTGATAGATCTCTACTTTCTCTCAGCTTTTGGTCACGTACGCCTACTCGTCAATTTTTTTTTCATTTTGAGGAAAGAAAGTATGACAAGAAGTGGGGGGGGGGGGTATAGAGCTGGTTTCAGTATGAATTTGCTGGTCTCTTTATTCAGTGATTCTTTTTTCCTGACTAGGTGAGTCTTAACCTAATTATATGTAAGATTGCTCCTTTATTACTGAAACTCACCTTACCTGCAGCTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAGGTGAATTGCTTTCTCCCAAAGTTGTGTGTTTGTGCTTGATAGTTTCTCATTTGTATCAGCTGATTAATAGTTTTATTGTATCGCTGTGCAGCTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGT</genome_strand>
        <mrna_strand>TGCACATGCTCATGACTACCATATTAATTCGATATCAAATAACAG............................................................................................TGATGGTGAAACATTCATATCAGCCGATGATCTTCGAATAAACCTTTGGAACTTGGAAATAAGTAATCAAAGTTTCAATATTGTCGATGTCAAGCCATCAAATATGGAAGATCTTACTG.......................................................................................................................................AGGTGATAACATCAGCAGAATTCCATCCTACACATTGTAACACATTAGCTTATAGTAGTTCAAAAGGATCAGTTCGTTTAATAGATTTGCGGCAGTCAGCATTGTGTGACTCACATTCTAAATT..........................................................................................................................................................................................................................................GTTTGAGGAACAGGAAGCACCTGGTTCAAGATCTTTTTTCACCGAGATAATCGCTTCAATTTCAGATATAAAATTTGCGAAGGATGGAAGATACATACTTAGTCGTGACTACATGACCCTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGACATAAACATGGATTCAGGTCCAGTTTCAACATTCCAGGTTCATGAATATTTAAGACCAAAG...........................................................................................CTTTGTGACTTATATGAGAATGATTCCATCTTTGATAAATTTGAGTGTTGCCTTAGTGGTGATGGTTCGCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393245" ref_strand="+" ref_description="SGN-E393245 [TUS-38-C24]">
      <seq>ctgaggtgataacttcagctgaatttcaccctactcactgtaacatattggcttatagtagttcaagaggatcaatacgtttggtagatatgcggcagtcagcattgtgcgactcgcactctaagttgtttgaggagcaggaaactcctggctcaaggtccttttttaccgagataattgcttcaatttcagatataaaatttgcaaaggctggaagatacatactcagtcgtgactacatgaccctgaagctatgggatataaacatggattctggtccagtttcaacttttcaggttcatgaacatttgagaccaaagctgtgtgatttatatgagaatgattccatctttgataaattcgagtgttgccttattggtgatggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27988" stop="25375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27823" g_stop="27821" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27820" i_stop="27686" i_length="135">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27685" g_stop="27562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="127" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27561" i_stop="27328" i_length="234">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27327" g_stop="27204" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="251" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27203" i_stop="25904" i_length="1300">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25903" g_stop="25835" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="320" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25834" i_stop="25744" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25743" g_stop="25675" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="389" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E393245" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27823" e_stop="27821"/>
          <exon e_start="27685" e_stop="27562"/>
          <exon e_start="27327" e_stop="27204"/>
          <exon e_start="25903" e_stop="25835"/>
          <exon e_start="25743" e_stop="25675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGAGTTTTTGATATGTCGATCTCAACTTCCATTTTGGTGTGGTTACATCACATGATAGTTTTATTAGCTTATTTATTTATCGAAACACTTGTTTCAGTGAATGCTCAAATGTGCTTAGATGTTTCTTATTGCAGAGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTTGTAAGTATTACATTTACTTAACTTATAGTTTTTTGCTGATGGGTGTTTTTCTTTTTAATACTGCAAAACAAAACAAGATATCCACCTGCAAAGAAATATTCTGGAAGCGGGCTAGTTTCTTAACAGTATAAGGGGCCCTGGAAAATGATATTCTTCAAGTTGAGAGATACTTATTTTCTAATTACTTTCTCATAGCTTTTATAAGTTGAAATGTTGGTTTTCTCCTATACACAGGTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAGGTTGGTCTTCCACTCTTTTCTGTAGGTCTAAACCTTTTCAATTGACTAATATGAGAGATGTGCAACGTTGTGTATCATATTCTTGACTCTCTTAAGTACTGTCTGATATGTATAAGTAAGGAAAGCAGACTTCTCAGAAGGTTATATGACTCTAGTCCATGGGCAAAGTCCATTGCATCTCTAGGTCATATTCCTGGTAATTGGTTTAGGAACATGTTTAATGAATGAGCTCTGTCAAATTCTTCATTGACGGAGTGTGATCTCTTTTGCAAGTATACCAGCGTTTGTGGTGCTTCTCTTATCTTCTCTGTTCAGTTTTTGCAAGCAAGTGTTGTTTTCACAAAATGGTACCAAACGGGTACTGCAAAACTTTCAAGATTTTACATCTAGAAAGAGTTCAAAAAAGATACTCTACACCATATACAAAACTTTGGTTACATCACTAAATAAAACCCCAAGACATCCATCTTAAAGTTGTAAAGCCGATAGTGCCTCTGAGACCCCTTCAGAGCATTTTCTGTTCTTATCTTTTCATAGCGACCACATAATGCATAGATGAGCTGTCTAAGAAAATGCCTTACATTCTTCATTATGAATTGGAGAGCCTCTCCAATTGCAAAATAGTTACTCACAGTTCTTTCCATTGCCTGATGGAAAGGTCGTGTTCATTAGTTCATTAGTCGTGTCAGATTTACAAACAAATAATTGACAGATTCTTCAATCATTCAGCGCATGAACCACTTATTACAATACATTTTGACCCTTCTATTATCATTGTTATCTGTAATTGATTGGCATGCTTCTTTAATCCTTGTGTTTCCCTGCGGATAACTTTGCAATTGAGTTTTTTTTTTCTGCTAAGTCTCATCTTTCAAAAAATCTTAATTACATACAAACTCTCTTAGTTTCATTAGGTTAGGCTCCATTTGCATCTTATGTTCGTGAGTCTGGAAAAGCTTTTTTGAACTTAAAAGTGCAGTTTCTTCATGTTTTTTTGATGCTTTTGTAGTTGCTGGCAAGAATATGCATATGTTACACCATAAGGGTAACTATTATATTCAAGTTCCTGATAGATCTCTACTTTCTCTCAGCTTTTGGTCACGTACGCCTACTCGTCAATTTTTTTTTCATTTTGAGGAAAGAAAGTATGACAAGAAGTGGGGGGGGGGGGTATAGAGCTGGTTTCAGTATGAATTTGCTGGTCTCTTTATTCAGTGATTCTTTTTTCCTGACTAGGTGAGTCTTAACCTAATTATATGTAAGATTGCTCCTTTATTACTGAAACTCACCTTACCTGCAGCTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAGGTGAATTGCTTTCTCCCAAAGTTGTGTGTTTGTGCTTGATAGTTTCTCATTTGTATCAGCTGATTAATAGTTTTATTGTATCGCTGTGCAGCTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCT</genome_strand>
        <mrna_strand>CTG.......................................................................................................................................AGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTT..........................................................................................................................................................................................................................................GTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAG...........................................................................................CTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTATTGGTGATGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716082" ref_strand="-" ref_description="SGN-E716082 [FB16AC09]">
      <seq>ttttttttttttttttttttttttagaaaatgaaagtcgccaaatatttccaatattacaacactcgtatataacaaataattactccaaatgcttaatgaacctcaaatttgtttatttgatcttcttgtagaagttcttggagcatattctacctgctcatatataaagggacttctctattgataaggctacaagcaattaagccatatatactccaaattagtacgagctctcactaattcatggattcatcataataagatatcaagaagatcaaaattttatcaagttccacagaattgtatagctagaaagtacaataatcaagctaacaggaaaaccatttaagaagaagtatgaccacaagatacaactaagcctatgctagtaccagaagactgattggtcattggtagcttcttctctttggttctcctctgatgaagcaagaagcaattctaccttttactgagtcttggcataacctagatcattttcactatgataataacaaatcaacgaggctcccttttgatcagtcaatcttcacagatgagtagattttcctaacaaaccagaaggaagcatagaatccgatggttcctgttactacaaagaaggcgtatgatgcaatcaacatatagccgaaatacaggattcctgaaaccaactttgtgatttccaacttggtgaagaagtagaagacggagtagagaaacaggtataaagcagaggatccagcagtcagatatgctctccaccaccaatgatagtcttcgctgcacaactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9295" stop="34533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32364" g_stop="32389" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.692"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32390" i_stop="33464" i_length="1075">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33465" g_stop="34233" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="795" r_length="769" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E716082" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716082" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32364" e_stop="32389"/>
          <exon e_start="33465" e_stop="34233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAGTTACTTATATTTTTTATAGGTAACTAACAAGGCCTAAACTAAATGAACTCACTCAAATACCATGCAAAGAAAGCTCTGAAATAACAAGCTTATCCTTATAAAGAAATGATGAACATTTAATTTTAAAAAAAATGATGAACTTTGCATGTACTTATTTACACAACTATTGAAGAAGGAAGTGTTATTAAATGTCATCACTTTACAACTTAAAGCGACAAAACAATGCAAAGCGAGGGGGTCATCACTTCATGGGTGAAGCCACATGCTTTAGAAAAGTGTACGCTTTAGAGAAGTGTGCGCAAAGTGATATGTTGAGGATCGGTTGCCTATTCAAATCTCAACTTTAAGAAGTTTAGATTAATATCAATATATAGAATGCTTAAAAAGAATTTGTTAATTAGAATATAATTATTATAGTACGAAAATCATATTTTTGTAACTTTTATATTTTTGCAACTTGTGGGCTTCAGTTCAAACAAGGGATAAAATCAAAATCTCAATAATGTTCGAGCCAGACACAAATTACAAAAGAAAGAGATCAGTCACTTTAAACACATAATAAAATCTCAGTGTGCTTTTTTAAAGAGGATTATTGTTGATGGAATGCAATTCTTCTCTATTCAAACAAGGCATAACTGCCAAGAAACATTGTGAATTTGGTACTGCCATGGATTTCCACGGAGCCTTGCAACATAAAAGAAGGAGCATCCAATATTCTAGAGAAGACCGCCATGATCAAGCAAACTAGCTCCATGAAGAAGGAGTTCTGCAACTAAAAGTGTTGTTTTTAGGCATTCTTCAGCAGTTTTTAATGATCAACACTATATCAGTCAGTGTGTCTTCTCTTCCACTGAGTAAATATATATTCTTGTATTCAAAGTATTTCCTAACTTTAGTTGGTGTGTCAAATCCCATTCACTTTAATTTGTTAAATTAATATCTTGGCTACACCATTTATGAGTCAACAACCCTGCCCATACGTTTGAAGATCTTTGGATTCCTATCACAAATTTCTAACATTTATTCTACAGACATATCAATTTTGGGCAGACTGCTGTCTACTACAAATTTCAAGAATGAAAACAAAGGGATAGAAAATGAAAGTCGCCAAATATTTCCAATATTACAACACTCGTATATAACAAATAATTACTCCAAATGCTTAATGAACCTCAAATTTGTTTATTTGATCTTCTTGTAGAAGTTCTTGGAGCATATTCTACCTGCTCATATATAAAGGGACTTCTCTATTGATAAGGCTACAAGCAATTAAGCCATATATACTCCAAATTAGTACGAGCTCTCACTAATTCATGGATTCATCATAATAAGATATCAAGAAGATCAAAATTTTATCAAGTTCCACAGAATTGTATAGCTAGAAAGTACAATAATCAAGCTAACAGGAAAACCATTTAAGAAGAAGTATGACCACAAGATACAACTAAGCCTATGCTAGTACCAGAAGACTGATTGGTCATTGGTAGCTTCTTCTCTTTGGTTCTCCTCTGATGAAGCAAGAAGCAATTCTACCTTTTACTGAGTCTTGGCATAACCTAGATCATTTTCACTATGATAATAACAAATCAACGAGGCTCCCTTTTGATCAGTCAATCTTCACAGATGAGTAGATTTTCCTAACAAACCAGAAGGAAGCATAGAATCCGATGGTTCCTGTTACTACAAAGAAGGCGTATGATGCAATCAACATATAGCCGAAATACAGGATTCCTGAAACCAACTTTGTGATTTCCAACTTGGTGAAGAAGTAGAAGACGGAGTAGAGAAACAGGTATAAAGCAGAGGATCCAGCAGTCAGATATGCTCTCCACCACCAATGATAGTCTTCGCTGCACAACTGGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGAAAGTCGCCAAATATTTCCAATATTACAACACTCGTATATAACAAATAATTACTCCAAATGCTTAATGAACCTCAAATTTGTTTATTTGATCTTCTTGTAGAAGTTCTTGGAGCATATTCTACCTGCTCATATATAAAGGGACTTCTCTATTGATAAGGCTACAAGCAATTAAGCCATATATACTCCAAATTAGTACGAGCTCTCACTAATTCATGGATTCATCATAATAAGATATCAAGAAGATCAAAATTTTATCAAGTTCCACAGAATTGTATAGCTAGAAAGTACAATAATCAAGCTAACAGGAAAACCATTTAAGAAGAAGTATGACCACAAGATACAACTAAGCCTATGCTAGTACCAGAAGACTGATTGGTCATTGGTAGCTTCTTCTCTTTGGTTCTCCTCTGATGAAGCAAGAAGCAATTCTACCTTTTACTGAGTCTTGGCATAACCTAGATCATTTTCACTATGATAATAACAAATCAACGAGGCTCCCTTTTGATCAGTCAATCTTCACAGATGAGTAGATTTTCCTAACAAACCAGAAGGAAGCATAGAATCCGATGGTTCCTGTTACTACAAAGAAGGCGTATGATGCAATCAACATATAGCCGAAATACAGGATTCCTGAAACCAACTTTGTGATTTCCAACTTGGTGAAGAAGTAGAAGACGGAGTAGAGAAACAGGTATAAAGCAGAGGATCCAGCAGTCAGATATGCTCTCCACCACCAATGATAGTCTTCGCTGCACAACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307037" ref_strand="+" ref_description="SGN-E307037 [cLEY-15-I5]">
      <seq>ttggaagctaccttggatataaaaagccagccattgaggaccctgttaagacaaacaaaatacctaggcaaataccagagcaggcttggtacatgacaccgtctttttctgtacttattgggggtattctcccatttggagctgttttcattgaactcttcttcatcctgacctctatatggctgaaccagtactactacatctttggcttccttttcatcgttttcctgatcttgataatcacatgtgcggagatatccgttgtgctctgttacttccagttgtgcagcgaagactatcattggtggtggagagcatatctgactgctggatcctctgctttatacctgtttctctactccgtcttctacttcttcaccaagttggaaatcacaaagttggtttcaggaatcctgtatttcggctatatgttgattgcatcatacgccttctttgtagtaacaggaaccatcggattctatgcttccttctggtttgttaggaaaatctactcatctgtgaagattgactgatcaaaagggagcctcgttgatttgttattatcatagtgaaaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="-" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34809" stop="33630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34509" g_stop="33930" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="-" ref_id="SGN-E307037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34509" e_stop="33930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGCTACCTTGGATATAAAAAGCCAGCCATTGAGGACCCTGTTAAGACAAACAAAATACCTAGGCAAATACCAGAGCAGGCTTGGTACATGACACCGTCTTTTTCTGTACTTATTGGGGGTATTCTCCCATTTGGAGCTGTTTTCATTGAACTCTTCTTCATCCTGACCTCTATATGGCTGAACCAGTACTACTACATCTTTGGCTTCCTTTTCATCGTTTTCCTGATCTTGATAATCACATGTGCGGAGATATCCGTTGTGCTCTGTTACTTCCAGTTGTGCAGCGAAGACTATCATTGGTGGTGGAGAGCATATCTGACTGCTGGATCCTCTGCTTTATACCTGTTTCTCTACTCCGTCTTCTACTTCTTCACCAAGTTGGAAATCACAAAGTTGGTTTCAGGAATCCTGTATTTCGGCTATATGTTGATTGCATCATACGCCTTCTTTGTAGTAACAGGAACCATCGGATTCTATGCTTCCTTCTGGTTTGTTAGGAAAATCTACTCATCTGTGAAGATTGACTGATCAAAAGGGAGCCTCGTTGATTTGTTATTATCATAGTGAAAATGATC</genome_strand>
        <mrna_strand>TTGGAAGCTACCTTGGATATAAAAAGCCAGCCATTGAGGACCCTGTTAAGACAAACAAAATACCTAGGCAAATACCAGAGCAGGCTTGGTACATGACACCGTCTTTTTCTGTACTTATTGGGGGTATTCTCCCATTTGGAGCTGTTTTCATTGAACTCTTCTTCATCCTGACCTCTATATGGCTGAACCAGTACTACTACATCTTTGGCTTCCTTTTCATCGTTTTCCTGATCTTGATAATCACATGTGCGGAGATATCCGTTGTGCTCTGTTACTTCCAGTTGTGCAGCGAAGACTATCATTGGTGGTGGAGAGCATATCTGACTGCTGGATCCTCTGCTTTATACCTGTTTCTCTACTCCGTCTTCTACTTCTTCACCAAGTTGGAAATCACAAAGTTGGTTTCAGGAATCCTGTATTTCGGCTATATGTTGATTGCATCATACGCCTTCTTTGTAGTAACAGGAACCATCGGATTCTATGCTTCCTTCTGGTTTGTTAGGAAAATCTACTCATCTGTGAAGATTGACTGATCAAAAGGGAGCCTCGTTGATTTGTTATTATCATAGTGAAAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074G21-BkX4H/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0074G21.1" temp_strand="+" temp_description="C06SLm0074G21.1  AC219224.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0074G21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47337" stop="48163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47636" g_stop="47863" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074G21.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074G21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47636" e_stop="47863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTGAAAACACTGAAAAATTTTC-TTCTCTGCATTTATTTTTTTTTCAAATAAAATCAAAGTGCCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGACGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTT--AAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>66</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="19" PGL_stop="1784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19" e_stop="478"/>
            <exon e_start="1372" e_stop="1745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19" e_stop="478" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="479" i_stop="1371" i_length="893"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="1372" e_stop="1745" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19" stop="478"/>
              <exon start="1372" stop="1745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGAAAATTTGCTCACATGAACATTCAGTTTTCGCCTATCAAACTGTAATTCCATGTGGTTTTGCTTATTACTACTGATTTACGGTCAAAAGAATCAATCTTTTGAGGTGGGATGACTAATTGTTGCGGTTAGTGGAACAGAGATTTGGGTTGTTAGTGTTCAGCTATGAAATGGTTCATCCTTTTATGTTAGGGTTCATCTTAATTAACACGCGAAGCAAGCAGTGAAAAATGAAGACGGAAAAAGAGGAAGAGAGGCATATGGATCCTTTGTTTCCTAGATTACATATAAATGATACAGACAAAGGAGGTCCAAGAGCACCCCCTAGAAACAAAATGGCTCTTTGTGAACAGTCGTCATCCAGATCGCCTCAAAGTTTCACCTCTAGTTCTACTCCTGCAACCATGCAAATGCTACCTAATAGTGGAAACTCTATTTCTGCAGCATCTTCTACTCTT : GGAGCATAGTGGAAGTCAAGCTGGAGATCAAGCAAAGTACCAAAAGAGAGAACATTGTGTTAAACTACCTGCTCCTCATCTGTCAACTATAGAGACAACTGTGGTGCATGAAACTCCAACTCCAGGACATAGCAAGCTAAATATTAGTAAATCATTTGTATCAAGTGCTCCAGAAAACAGATGTGGTCTAGTAGGTGACTTGAATAGATGTAGTGATTCTAATTCTGAATCTGATGAAGACTCTTGGATTTTACACAAAAGGAAGGCTGCAGAAGATGTTACTAATGCGAAGCATGAAGATGCCTCGACTAAGAGATGTGCTTCAATAATGGAAGGTCCGTCGTGTTCCTTTCTGCCTCACGGAAACAGCCATC</gDNA_template>
            <first_frame> V  E  N  L  L  T  *  T  F  S  F  R  L  S  N  C  N  S  M  W  F  C  L  L  L  L  I  Y  G  Q  K  N  Q  S  F  E  V  G  *  L  I  V  A  V  S  G  T  E  I  W  V  V  S  V  Q  L  *  N  G  S  S  F  Y  V  R  V  H  L  N  *  H  A  K  Q  A  V  K  N  E  D  G  K  R  G  R  E  A  Y  G  S  F  V  S  *  I  T  Y  K  *  Y  R  Q  R  R  S  K  S  T  P  *  K  Q  N  G  S  L  *  T  V  V  I  Q  I  A  S  K  F  H  L  *  F  Y  S  C  N  H  A  N  A  T  *  *  W  K  L  Y  F  C  S  I  F  Y  S   : W  S  I  V  E  V  K  L  E  I  K  Q  S  T  K  R  E  N  I  V  L  N  Y  L  L  L  I  C  Q  L  *  R  Q  L  W  C  M  K  L  Q  L  Q  D  I  A  S  *  I  L  V  N  H  L  Y  Q  V  L  Q  K  T  D  V  V  *  *  V  T  *  I  D  V  V  I  L  I  L  N  L  M  K  T  L  G  F  Y  T  K  G  R  L  Q  K  M  L  L  M  R  S  M  K  M  P  R  L  R  D  V  L  Q  *  W  K  V  R  R  V  P  F  C  L  T  E  T  A  I </first_frame>
            <second_frame>  S  K  I  C  S  H  E  H  S  V  F  A  Y  Q  T  V  I  P  C  G  F  A  Y  Y  Y  *  F  T  V  K  R  I  N  L  L  R  W  D  D  *  L  L  R  L  V  E  Q  R  F  G  L  L  V  F  S  Y  E  M  V  H  P  F  M  L  G  F  I  L  I  N  T  R  S  K  Q  *  K  M  K  T  E  K  E  E  E  R  H  M  D  P  L  F  P  R  L  H  I  N  D  T  D  K  G  G  P  R  A  P  P  R  N  K  M  A  L  C  E  Q  S  S  S  R  S  P  Q  S  F  T  S  S  S  T  P  A  T  M  Q  M  L  P  N  S  G  N  S  I  S  A  A  S  S  T  L  :  G  A  *  W  K  S  S  W  R  S  S  K  V  P  K  E  R  T  L  C  *  T  T  C  S  S  S  V  N  Y  R  D  N  C  G  A  *  N  S  N  S  R  T  *  Q  A  K  Y  *  *  I  I  C  I  K  C  S  R  K  Q  M  W  S  S  R  *  L  E  *  M  *  *  F  *  F  *  I  *  *  R  L  L  D  F  T  Q  K  E  G  C  R  R  C  Y  *  C  E  A  *  R  C  L  D  *  E  M  C  F  N  N  G  R  S  V  V  F  L  S  A  S  R  K  Q  P   </second_frame>
            <third_frame>   R  K  F  A  H  M  N  I  Q  F  S  P  I  K  L  *  F  H  V  V  L  L  I  T  T  D  L  R  S  K  E  S  I  F  *  G  G  M  T  N  C  C  G  *  W  N  R  D  L  G  C  *  C  S  A  M  K  W  F  I  L  L  C  *  G  S  S  *  L  T  R  E  A  S  S  E  K  *  R  R  K  K  R  K  R  G  I  W  I  L  C  F  L  D  Y  I  *  M  I  Q  T  K  E  V  Q  E  H  P  L  E  T  K  W  L  F  V  N  S  R  H  P  D  R  L  K  V  S  P  L  V  L  L  L  Q  P  C  K  C  Y  L  I  V  E  T  L  F  L  Q  H  L  L  L  L :   E  H  S  G  S  Q  A  G  D  Q  A  K  Y  Q  K  R  E  H  C  V  K  L  P  A  P  H  L  S  T  I  E  T  T  V  V  H  E  T  P  T  P  G  H  S  K  L  N  I  S  K  S  F  V  S  S  A  P  E  N  R  C  G  L  V  G  D  L  N  R  C  S  D  S  N  S  E  S  D  E  D  S  W  I  L  H  K  R  K  A  A  E  D  V  T  N  A  K  H  E  D  A  S  T  K  R  C  A  S  I  M  E  G  P  S  C  S  F  L  P  H  G  N  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="312" stop="478"/>
                    <exon start="1372" stop="1744"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIQTKEVQEHPLETKWLFVNSRHPDRLKVSPLVLLLQPCKCYLIVETLFLQHLLLLEHSGSQAGDQAKYQKREHCVKLPAPHLSTIETTVVHETPTPGHSKLNISKSFVSSAPENRCGLVGDLNRCSDSNSESDEDSWILHKRKAAEDVTNAKHEDASTKRCASIMEGPSCSFLPHGNSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1189" e_stop="1784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1189" e_stop="1784" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1189" stop="1784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGGAAAATGATTTTTGTGGTCCAAATTTCGTCACATCAGGGAAACCTCTATATCATGGTAACATACATAAAAGTGCAGACAAGGAAAAAATGGTTATAACAAACTCCAAACCTTCTTTGAAATTTCAAAGCGTTTTCGAAAAGCAATATAAGGATACAGACAGGATGCAACTAAATTGCAGGGAGCATAGTGGAAGTCAAGCTGGAGATCAAGCAAAGTACCAAAAGAGAGAACATTGTGTTAAACTACCTGCTCCTCATCTGTCAACTATAGAGACAACTGTGGTGCATGAAACTCCAACTCCAGGACATAGCAAGCTAAATATTAGTAAATCATTTGTATCAAGTGCTCCAGAAAACAGATGTGGTCTAGTAGGTGACTTGAATAGATGTAGTGATTCTAATTCTGAATCTGATGAAGACTCTTGGATTTTACACAAAAGGAAGGCTGCAGAAGATGTTACTAATGCGAAGCATGAAGATGCCTCGACTAAGAGATGTGCTTCAATAATGGAAGGTCCGTCGTGTTCCTTTCTGCCTCACGGAAACAGCCATCAGAGTCCGAAGAGAGCTAAATCCTCTTCTGACTGTCCTG</gDNA_template>
            <first_frame> K  G  K  *  F  L  W  S  K  F  R  H  I  R  E  T  S  I  S  W  *  H  T  *  K  C  R  Q  G  K  N  G  Y  N  K  L  Q  T  F  F  E  I  S  K  R  F  R  K  A  I  *  G  Y  R  Q  D  A  T  K  L  Q  G  A  *  W  K  S  S  W  R  S  S  K  V  P  K  E  R  T  L  C  *  T  T  C  S  S  S  V  N  Y  R  D  N  C  G  A  *  N  S  N  S  R  T  *  Q  A  K  Y  *  *  I  I  C  I  K  C  S  R  K  Q  M  W  S  S  R  *  L  E  *  M  *  *  F  *  F  *  I  *  *  R  L  L  D  F  T  Q  K  E  G  C  R  R  C  Y  *  C  E  A  *  R  C  L  D  *  E  M  C  F  N  N  G  R  S  V  V  F  L  S  A  S  R  K  Q  P  S  E  S  E  E  S  *  I  L  F  *  L  S   </first_frame>
            <second_frame>  R  E  N  D  F  C  G  P  N  F  V  T  S  G  K  P  L  Y  H  G  N  I  H  K  S  A  D  K  E  K  M  V  I  T  N  S  K  P  S  L  K  F  Q  S  V  F  E  K  Q  Y  K  D  T  D  R  M  Q  L  N  C  R  E  H  S  G  S  Q  A  G  D  Q  A  K  Y  Q  K  R  E  H  C  V  K  L  P  A  P  H  L  S  T  I  E  T  T  V  V  H  E  T  P  T  P  G  H  S  K  L  N  I  S  K  S  F  V  S  S  A  P  E  N  R  C  G  L  V  G  D  L  N  R  C  S  D  S  N  S  E  S  D  E  D  S  W  I  L  H  K  R  K  A  A  E  D  V  T  N  A  K  H  E  D  A  S  T  K  R  C  A  S  I  M  E  G  P  S  C  S  F  L  P  H  G  N  S  H  Q  S  P  K  R  A  K  S  S  S  D  C  P  </second_frame>
            <third_frame>   G  K  M  I  F  V  V  Q  I  S  S  H  Q  G  N  L  Y  I  M  V  T  Y  I  K  V  Q  T  R  K  K  W  L  *  Q  T  P  N  L  L  *  N  F  K  A  F  S  K  S  N  I  R  I  Q  T  G  C  N  *  I  A  G  S  I  V  E  V  K  L  E  I  K  Q  S  T  K  R  E  N  I  V  L  N  Y  L  L  L  I  C  Q  L  *  R  Q  L  W  C  M  K  L  Q  L  Q  D  I  A  S  *  I  L  V  N  H  L  Y  Q  V  L  Q  K  T  D  V  V  *  *  V  T  *  I  D  V  V  I  L  I  L  N  L  M  K  T  L  G  F  Y  T  K  G  R  L  Q  K  M  L  L  M  R  S  M  K  M  P  R  L  R  D  V  L  Q  *  W  K  V  R  R  V  P  F  C  L  T  E  T  A  I  R  V  R  R  E  L  N  P  L  L  T  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1190" stop="1783"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RENDFCGPNFVTSGKPLYHGNIHKSADKEKMVITNSKPSLKFQSVFEKQYKDTDRMQLNCREHSGSQAGDQAKYQKREHCVKLPAPHLSTIETTVVHETPTPGHSKLNISKSFVSSAPENRCGLVGDLNRCSDSNSESDEDSWILHKRKAAEDVTNAKHEDASTKRCASIMEGPSCSFLPHGNSHQSPKRAKSSSDCP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="2776" PGL_stop="3898"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2776" e_stop="3898"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="2776" e_stop="3898" e_length="1123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2776" stop="3676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2930" stop="3665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2948" stop="3898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2952" stop="3824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2952" stop="3805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTCTATCAAATTTTCTTCTTTGAAGAATTTAGCATGTGATGATGTTCTTGAACCTCCTGTCGTGGAACAAAAAATTTCTACAAAACCAAACAATTTTGAGCTTACGACAGATAATGTTTATCTTCCCCTCCGCAAAGATAATGATAAGAAGAATATACCACAGCAATCATCTCAAAAACTAAATGTAGGGACACCAACATCGAGATCTTTTTTATCGGATCCAAAATTAGCACCTCGATCCTTCCAACCACCTCCTGGATATCAGTATTTAGTTCCAATAAGGTCACCTTCTGAAGGACTTATTTATAAACCTTATACAGGACCTTGTCCACCGCCTGGAGGGATCATAGCGCCAGCTTATGGTAGTTGCAGGCCTGTGACTTTATCTCCACCTATAGGTGGAGACTTCGCGAATGTGCCTTATAGTGTACCGACTTCCCACAAGCAGGGTGCTGGGATTTTTCCTGGTCCTGCACTCTTTGATCCATCCTGCATTCAACCGTATTCCATGCCTGTGATAAAGCCATCTGCTTCAAGTTCAGCTATCGAGCAAATGAATCCACTTTCCAGGATCAGGTCAAGTGAGAAGGAGAATAGTCCACTTATGCATGAGGTCAACTTAGTTAGGCCTCATCAAAAATCATGCAACATATCATGCCAGAAGAGTGCGGTCATGTCAGATTGTGATCGAATTATTCAGGCGGATAGAGGGAGTGACATGCAAGGAAGTACCGCAAGTAGTCCTCCTGAGAGGGTGCAAAAGGGTGCACTTTCTCTTTTTCCTGTCACACCAACTGCAAAAGGTTCAGATCAACCAGTTCAGGATAACGACACGGAGCAGCAAATTCAAGTCATCAAGGTTGTGCCCCATAATCCAAAGTCAGCATCTGAATCTGCAGCGCGGATTTTTAGATCTATACAAGAAGAAAGGAAAATGAATTACTAGTATGCAAAACCTTACAACTTAATGTTGTAAGAAAAGCCTTTTCTTCTGTATGTTTTCCCTTATCTAAATTTCCCTCATTTTATAGTTTACCTCTTGGATTAAAGGCTCTTTACTGTGAATATATTCAATGGAAAGTGAAAAGCAATACAGGTTCATTCTTTTTCTACTACTTCAT</gDNA_template>
            <first_frame> P  S  I  K  F  S  S  L  K  N  L  A  C  D  D  V  L  E  P  P  V  V  E  Q  K  I  S  T  K  P  N  N  F  E  L  T  T  D  N  V  Y  L  P  L  R  K  D  N  D  K  K  N  I  P  Q  Q  S  S  Q  K  L  N  V  G  T  P  T  S  R  S  F  L  S  D  P  K  L  A  P  R  S  F  Q  P  P  P  G  Y  Q  Y  L  V  P  I  R  S  P  S  E  G  L  I  Y  K  P  Y  T  G  P  C  P  P  P  G  G  I  I  A  P  A  Y  G  S  C  R  P  V  T  L  S  P  P  I  G  G  D  F  A  N  V  P  Y  S  V  P  T  S  H  K  Q  G  A  G  I  F  P  G  P  A  L  F  D  P  S  C  I  Q  P  Y  S  M  P  V  I  K  P  S  A  S  S  S  A  I  E  Q  M  N  P  L  S  R  I  R  S  S  E  K  E  N  S  P  L  M  H  E  V  N  L  V  R  P  H  Q  K  S  C  N  I  S  C  Q  K  S  A  V  M  S  D  C  D  R  I  I  Q  A  D  R  G  S  D  M  Q  G  S  T  A  S  S  P  P  E  R  V  Q  K  G  A  L  S  L  F  P  V  T  P  T  A  K  G  S  D  Q  P  V  Q  D  N  D  T  E  Q  Q  I  Q  V  I  K  V  V  P  H  N  P  K  S  A  S  E  S  A  A  R  I  F  R  S  I  Q  E  E  R  K  M  N  Y  *  Y  A  K  P  Y  N  L  M  L  *  E  K  P  F  L  L  Y  V  F  P  Y  L  N  F  P  H  F  I  V  Y  L  L  D  *  R  L  F  T  V  N  I  F  N  G  K  *  K  A  I  Q  V  H  S  F  S  T  T  S  </first_frame>
            <second_frame>  L  L  S  N  F  L  L  *  R  I  *  H  V  M  M  F  L  N  L  L  S  W  N  K  K  F  L  Q  N  Q  T  I  L  S  L  R  Q  I  M  F  I  F  P  S  A  K  I  M  I  R  R  I  Y  H  S  N  H  L  K  N  *  M  *  G  H  Q  H  R  D  L  F  Y  R  I  Q  N  *  H  L  D  P  S  N  H  L  L  D  I  S  I  *  F  Q  *  G  H  L  L  K  D  L  F  I  N  L  I  Q  D  L  V  H  R  L  E  G  S  *  R  Q  L  M  V  V  A  G  L  *  L  Y  L  H  L  *  V  E  T  S  R  M  C  L  I  V  Y  R  L  P  T  S  R  V  L  G  F  F  L  V  L  H  S  L  I  H  P  A  F  N  R  I  P  C  L  *  *  S  H  L  L  Q  V  Q  L  S  S  K  *  I  H  F  P  G  S  G  Q  V  R  R  R  I  V  H  L  C  M  R  S  T  *  L  G  L  I  K  N  H  A  T  Y  H  A  R  R  V  R  S  C  Q  I  V  I  E  L  F  R  R  I  E  G  V  T  C  K  E  V  P  Q  V  V  L  L  R  G  C  K  R  V  H  F  L  F  F  L  S  H  Q  L  Q  K  V  Q  I  N  Q  F  R  I  T  T  R  S  S  K  F  K  S  S  R  L  C  P  I  I  Q  S  Q  H  L  N  L  Q  R  G  F  L  D  L  Y  K  K  K  G  K  *  I  T  S  M  Q  N  L  T  T  *  C  C  K  K  S  L  F  F  C  M  F  S  L  I  *  I  S  L  I  L  *  F  T  S  W  I  K  G  S  L  L  *  I  Y  S  M  E  S  E  K  Q  Y  R  F  I  L  F  L  L  L  H </second_frame>
            <third_frame>   F  Y  Q  I  F  F  F  E  E  F  S  M  *  *  C  S  *  T  S  C  R  G  T  K  N  F  Y  K  T  K  Q  F  *  A  Y  D  R  *  C  L  S  S  P  P  Q  R  *  *  *  E  E  Y  T  T  A  I  I  S  K  T  K  C  R  D  T  N  I  E  I  F  F  I  G  S  K  I  S  T  S  I  L  P  T  T  S  W  I  S  V  F  S  S  N  K  V  T  F  *  R  T  Y  L  *  T  L  Y  R  T  L  S  T  A  W  R  D  H  S  A  S  L  W  *  L  Q  A  C  D  F  I  S  T  Y  R  W  R  L  R  E  C  A  L  *  C  T  D  F  P  Q  A  G  C  W  D  F  S  W  S  C  T  L  *  S  I  L  H  S  T  V  F  H  A  C  D  K  A  I  C  F  K  F  S  Y  R  A  N  E  S  T  F  Q  D  Q  V  K  *  E  G  E  *  S  T  Y  A  *  G  Q  L  S  *  A  S  S  K  I  M  Q  H  I  M  P  E  E  C  G  H  V  R  L  *  S  N  Y  S  G  G  *  R  E  *  H  A  R  K  Y  R  K  *  S  S  *  E  G  A  K  G  C  T  F  S  F  S  C  H  T  N  C  K  R  F  R  S  T  S  S  G  *  R  H  G  A  A  N  S  S  H  Q  G  C  A  P  *  S  K  V  S  I  *  I  C  S  A  D  F  *  I  Y  T  R  R  K  E  N  E  L  L  V  C  K  T  L  Q  L  N  V  V  R  K  A  F  S  S  V  C  F  P  L  S  K  F  P  S  F  Y  S  L  P  L  G  L  K  A  L  Y  C  E  Y  I  Q  W  K  V  K  S  N  T  G  S  F  F  F  Y  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2776" stop="3723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSIKFSSLKNLACDDVLEPPVVEQKISTKPNNFELTTDNVYLPLRKDNDKKNIPQQSSQKLNVGTPTSRSFLSDPKLAPRSFQPPPGYQYLVPIRSPSEGLIYKPYTGPCPPPGGIIAPAYGSCRPVTLSPPIGGDFANVPYSVPTSHKQGAGIFPGPALFDPSCIQPYSMPVIKPSASSSAIEQMNPLSRIRSSEKENSPLMHEVNLVRPHQKSCNISCQKSAVMSDCDRIIQADRGSDMQGSTASSPPERVQKGALSLFPVTPTAKGSDQPVQDNDTEQQIQVIKVVPHNPKSASESAARIFRSIQEERKMNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="4007" PGL_stop="3304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4007" e_stop="3994"/>
            <exon e_start="3892" e_stop="3304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="4007" e_stop="3994" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3993" i_stop="3893" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="3892" e_stop="3304" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4007" stop="3994"/>
              <exon start="3892" stop="3304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4007" stop="3994"/>
              <exon start="3892" stop="3304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739503" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACATTTTTCAT : TAGTAGAAAAAGAATGAACCTGTATTGCTTTTCACTTTCCATTGAATATATTCACAGTAAAGAGCCTTTAATCCAAGAGGTAAACTATAAAATGAGGGAAATTTAGATAAGGGAAAACATACAGAAGAAAAGGCTTTTCTTACAACATTAAGTTGTAAGGTTTTGCATACTAGTAATTCATTTTCCTTTCTTCTTGTATAGATCTAAAAATCCGCGCTGCAGATTCAGATGCTGACTTTGGATTATGGGGCACAACCTTGATGACTTGAATTTGCTGCTCCGTGTCGTTATCCTGAACTGGTTGATCTGAACCTTTTGCAGTTGGTGTGACAGGAAAAAGAGAAAGTGCACCCTTTTGCACCCTCTCAGGAGGACTACTTGCGGTACTTCCTTGCATGTCACTCCCTCTATCCGCCTGAATAATTCGATCACAATCTGACATGACCGCACTCTTCTGGCATGATATGTTGCATGATTTTTGATGAGGCCTAACTAAGTTGACCTCATGCATAAGTGGACTATTCTCCTTCTCACTTGACCTGATCCTGGAAAGTGGATTCATTTGCTCGATAGCTGAACTTGAAGCAGA</gDNA_template>
            <first_frame> Y  T  F  F  I :   S  R  K  R  M  N  L  Y  C  F  S  L  S  I  E  Y  I  H  S  K  E  P  L  I  Q  E  V  N  Y  K  M  R  E  I  *  I  R  E  N  I  Q  K  K  R  L  F  L  Q  H  *  V  V  R  F  C  I  L  V  I  H  F  P  F  F  L  Y  R  S  K  N  P  R  C  R  F  R  C  *  L  W  I  M  G  H  N  L  D  D  L  N  L  L  L  R  V  V  I  L  N  W  L  I  *  T  F  C  S  W  C  D  R  K  K  R  K  C  T  L  L  H  P  L  R  R  T  T  C  G  T  S  L  H  V  T  P  S  I  R  L  N  N  S  I  T  I  *  H  D  R  T  L  L  A  *  Y  V  A  *  F  L  M  R  P  N  *  V  D  L  M  H  K  W  T  I  L  L  L  T  *  P  D  P  G  K  W  I  H  L  L  D  S  *  T  *  S  R </first_frame>
            <second_frame>  I  H  F  S   : L  V  E  K  E  *  T  C  I  A  F  H  F  P  L  N  I  F  T  V  K  S  L  *  S  K  R  *  T  I  K  *  G  K  F  R  *  G  K  T  Y  R  R  K  G  F  S  Y  N  I  K  L  *  G  F  A  Y  *  *  F  I  F  L  S  S  C  I  D  L  K  I  R  A  A  D  S  D  A  D  F  G  L  W  G  T  T  L  M  T  *  I  C  C  S  V  S  L  S  *  T  G  *  S  E  P  F  A  V  G  V  T  G  K  R  E  S  A  P  F  C  T  L  S  G  G  L  L  A  V  L  P  C  M  S  L  P  L  S  A  *  I  I  R  S  Q  S  D  M  T  A  L  F  W  H  D  M  L  H  D  F  *  *  G  L  T  K  L  T  S  C  I  S  G  L  F  S  F  S  L  D  L  I  L  E  S  G  F  I  C  S  I  A  E  L  E  A   </second_frame>
            <third_frame>   Y  I  F  H  :  *  *  K  K  N  E  P  V  L  L  F  T  F  H  *  I  Y  S  Q  *  R  A  F  N  P  R  G  K  L  *  N  E  G  N  L  D  K  G  K  H  T  E  E  K  A  F  L  T  T  L  S  C  K  V  L  H  T  S  N  S  F  S  F  L  L  V  *  I  *  K  S  A  L  Q  I  Q  M  L  T  L  D  Y  G  A  Q  P  *  *  L  E  F  A  A  P  C  R  Y  P  E  L  V  D  L  N  L  L  Q  L  V  *  Q  E  K  E  K  V  H  P  F  A  P  S  Q  E  D  Y  L  R  Y  F  L  A  C  H  S  L  Y  P  P  E  *  F  D  H  N  L  T  *  P  H  S  S  G  M  I  C  C  M  I  F  D  E  A  *  L  S  *  P  H  A  *  V  D  Y  S  P  S  H  L  T  *  S  W  K  V  D  S  F  A  R  *  L  N  L  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074G21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="6201" PGL_stop="5410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6201" e_stop="5410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="6201" e_stop="5410" e_length="792"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6201" stop="5410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAAATTTTTCATAAGAAATTTTTATTTCAAGATTTTGTCAACTCTGTTGAAACAAGAATTAGTTTTCTTCTTCAAAGTTCAAACCCAAACGTCTCATTATTGTGGCTTGGATTTTAGTTTTTTATCTTCTTCTTCTTATTTTTTTCTTGTTAATGACAAAATAGCAGCTTCACATTTTGATAATATCTGTTTTAAATTTTAAAAGCTTTTGCTAATTTAATTAATTTTCTTAATGAGTAATGGATTTTTTTTTAACTACATAAGAAAAAAGGAGAATTGACAGATTTTTTTTTTCTTTTTGCCGATTTGGTGTTCGATTGAAAGTTGAGTTTGCGAATATGGGGATTTTGGAGAATGGCAAAGACAACAAGCCTTTATCATTAAAAGTGCTTCAGTTTCTCTTGTTGTTTTTGGGTTTAGGAATTGCTTTATCAATTTTAAGTATGTTTATGCTTAGATTTTCAGAATTGAAAAAGGTACTCCCTGTGGTACAATCTCCATGTTTTGAACAACAAAATAGTTTAGAGAATTGGATTAAGCCTCTATCAAACTTGCATCATTCAATGAATGATGCTGAGCTTTTTTGGAGGGCTTCATTTGTTCCTCAAATGAAAAAATTGCCTTTTAAGAGAACACCTAAAATCGCGTTCTTGTTCTTAACGAGAGGGCCTCTGCCTTTGGCTCCGTTGTGGGAGAGGTTTTTCAAAGGGAATGAAGAGTTTTATTCAATCTACATTCATAATTTACCATCTTACAACCCTGATTTCCCAACTTCATCTGTGTTTTATG</gDNA_template>
            <first_frame> Q  *  I  F  H  K  K  F  L  F  Q  D  F  V  N  S  V  E  T  R  I  S  F  L  L  Q  S  S  N  P  N  V  S  L  L  W  L  G  F  *  F  F  I  F  F  F  L  F  F  S  C  *  *  Q  N  S  S  F  T  F  *  *  Y  L  F  *  I  L  K  A  F  A  N  L  I  N  F  L  N  E  *  W  I  F  F  *  L  H  K  K  K  G  E  L  T  D  F  F  F  L  F  A  D  L  V  F  D  *  K  L  S  L  R  I  W  G  F  W  R  M  A  K  T  T  S  L  Y  H  *  K  C  F  S  F  S  C  C  F  W  V  *  E  L  L  Y  Q  F  *  V  C  L  C  L  D  F  Q  N  *  K  R  Y  S  L  W  Y  N  L  H  V  L  N  N  K  I  V  *  R  I  G  L  S  L  Y  Q  T  C  I  I  Q  *  M  M  L  S  F  F  G  G  L  H  L  F  L  K  *  K  N  C  L  L  R  E  H  L  K  S  R  S  C  S  *  R  E  G  L  C  L  W  L  R  C  G  R  G  F  S  K  G  M  K  S  F  I  Q  S  T  F  I  I  Y  H  L  T  T  L  I  S  Q  L  H  L  C  F  M </first_frame>
            <second_frame>  N  K  F  F  I  R  N  F  Y  F  K  I  L  S  T  L  L  K  Q  E  L  V  F  F  F  K  V  Q  T  Q  T  S  H  Y  C  G  L  D  F  S  F  L  S  S  S  S  Y  F  F  L  V  N  D  K  I  A  A  S  H  F  D  N  I  C  F  K  F  *  K  L  L  L  I  *  L  I  F  L  M  S  N  G  F  F  F  N  Y  I  R  K  K  E  N  *  Q  I  F  F  F  F  L  P  I  W  C  S  I  E  S  *  V  C  E  Y  G  D  F  G  E  W  Q  R  Q  Q  A  F  I  I  K  S  A  S  V  S  L  V  V  F  G  F  R  N  C  F  I  N  F  K  Y  V  Y  A  *  I  F  R  I  E  K  G  T  P  C  G  T  I  S  M  F  *  T  T  K  *  F  R  E  L  D  *  A  S  I  K  L  A  S  F  N  E  *  C  *  A  F  L  E  G  F  I  C  S  S  N  E  K  I  A  F  *  E  N  T  *  N  R  V  L  V  L  N  E  R  A  S  A  F  G  S  V  V  G  E  V  F  Q  R  E  *  R  V  L  F  N  L  H  S  *  F  T  I  L  Q  P  *  F  P  N  F  I  C  V  L   </second_frame>
            <third_frame>   I  N  F  S  *  E  I  F  I  S  R  F  C  Q  L  C  *  N  K  N  *  F  S  S  S  K  F  K  P  K  R  L  I  I  V  A  W  I  L  V  F  Y  L  L  L  L  I  F  F  L  L  M  T  K  *  Q  L  H  I  L  I  I  S  V  L  N  F  K  S  F  C  *  F  N  *  F  S  *  *  V  M  D  F  F  L  T  T  *  E  K  R  R  I  D  R  F  F  F  S  F  C  R  F  G  V  R  L  K  V  E  F  A  N  M  G  I  L  E  N  G  K  D  N  K  P  L  S  L  K  V  L  Q  F  L  L  L  F  L  G  L  G  I  A  L  S  I  L  S  M  F  M  L  R  F  S  E  L  K  K  V  L  P  V  V  Q  S  P  C  F  E  Q  Q  N  S  L  E  N  W  I  K  P  L  S  N  L  H  H  S  M  N  D  A  E  L  F  W  R  A  S  F  V  P  Q  M  K  K  L  P  F  K  R  T  P  K  I  A  F  L  F  L  T  R  G  P  L  P  L  A  P  L  W  E  R  F  F  K  G  N  E  E  F  Y  S  I  Y  I  H  N  L  P  S  Y  N  P  D  F  P  T  S  S  V  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5935" stop="5411"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRRIDRFFFSFCRFGVRLKVEFANMGILENGKDNKPLSLKVLQFLLLFLGLGIALSILSMFMLRFSELKKVLPVVQSPCFEQQNSLENWIKPLSNLHHSMNDAELFWRASFVPQMKKLPFKRTPKIAFLFLTRGPLPLAPLWERFFKGNEEFYSIYIHNLPSYNPDFPTSSVFY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6200" stop="5997"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKFFIRNFYFKILSTLLKQELVFFFKVQTQTSHYCGLDFSFLSSSSYFFLVNDKIAASHFDNICFKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="11081" PGL_stop="13138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11081" e_stop="11167"/>
            <exon e_start="11248" e_stop="11411"/>
            <exon e_start="12032" e_stop="12195"/>
            <exon e_start="12831" e_stop="13138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11081" e_stop="11167" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.908">
            <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11248" e_stop="11411" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12032" e_stop="12195" e_length="164"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12196" i_stop="12830" i_length="635"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12831" e_stop="13138" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11081" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="13134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11085" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="13138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11085" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="13124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11085" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="13080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11086" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="12905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11105" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="12990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11122" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="13124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11135" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="13128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11135" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="13125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11259" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="13089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11269" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12831" stop="13115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12112" stop="12195"/>
              <exon start="12831" stop="13124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCACTGGCGTCTTCCTTTTAAGTTTATTGCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA : GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG : GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG : GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTAATGAGTTCCA</gDNA_template>
            <first_frame> F  H  W  R  L  P  F  K  F  I  A  S  S  C  T  G  R  R  I  E  T  L  Q  T  L  L  L  L  T  :  G  R  W  C  *  N  D  D  S  S  R  A  T  G  L  G  D  R  Q  E  K  Q  L  I  F  G  E  G  V  W  *  W  Y  R  R  C  R  I  Q  Q  R  A  *  Q  S  L  Q  S  S  L  L  Q  A  F  W :   P  S  K  Q  E  D  C  D  H  P  A  W  R  Q  R  S  I  S  V  A  C  Y  F  K  D  Q  E  T  E  Q  A  F  K  F  A  E  *  I  C  N  E  E  G  V  S  V  H  G  Q  G  C  I  K  P   : G  S  R  *  L  L  Q  A  R  S  E  E  G  I  P  C  K  I  E  C  C  E  Q  E  S  Q  D  C  E  I  W  C  Q  E  E  K  Q  A  G  L  D  S  H  S  R  I  C  *  A  R  L  Y  E  L  H  L  I  F  F  F  F  P  M  S  S  *  V  P  E  S  L  L  F  E  F  I  F  F  *  I  F  G  *  N  V  R  S  I  *  D  F  Y  K  D  G  S  Y  S  D  *  *  V  P </first_frame>
            <second_frame>  F  T  G  V  F  L  L  S  L  L  R  L  L  A  Q  A  V  E  S  K  L  Y  R  P  F  C  Y  S  Q :   V  G  G  V  E  M  T  T  V  P  G  Q  L  V  W  E  I  V  K  K  N  N  S  F  L  V  K  E  F  G  N  G  T  A  G  V  V  F  S  K  E  P  N  N  L  Y  N  L  H  S  Y  K  H  S   : G  L  A  N  K  K  T  V  T  I  Q  P  G  G  K  D  Q  S  V  L  L  A  T  S  K  T  K  K  Q  N  K  P  S  S  L  L  N  K  S  V  M  K  K  E  F  R  C  M  A  K  A  V  S  N  Q  :  V  A  D  N  Y  Y  R  P  D  L  K  K  A  S  L  A  R  L  S  A  V  N  K  S  L  K  I  A  K  S  G  V  K  K  R  N  R  Q  A  *  I  P  I  L  E  Y  V  R  L  G  C  M  S  C  T  *  F  F  F  S  S  Q  C  P  L  E  Y  P  K  V  C  Y  L  S  S  Y  F  S  R  F  L  A  K  T  Y  V  L  F  E  I  F  I  K  M  A  V  I  L  I  N  E  F   </second_frame>
            <third_frame>   S  L  A  S  S  F  *  V  Y  C  V  F  L  H  R  P  S  N  R  N  S  T  D  P  F  A  T  H   : R  *  V  V  L  K  *  R  Q  F  Q  G  N  W  F  G  R  S  S  R  K  T  T  H  F  W  *  R  S  L  V  M  V  P  P  V  S  Y  S  A  K  S  L  T  I  F  T  I  F  T  L  T  S  I  L  :  A  *  Q  T  R  R  L  *  P  S  S  L  E  A  K  I  N  Q  C  C  L  L  L  Q  R  P  R  N  R  T  S  L  Q  V  C  *  I  N  L  *  *  R  R  S  F  G  A  W  P  R  L  Y  Q  T  R :   *  Q  I  T  I  T  G  Q  I  *  R  R  H  P  L  Q  D  *  V  L  *  T  R  V  S  R  L  R  N  L  V  S  R  R  E  T  G  R  P  R  F  P  F  *  N  M  L  G  *  A  V  *  A  A  L  D  F  F  F  L  P  N  V  L  L  S  T  R  K  F  A  I  *  V  H  I  F  L  D  F  W  L  K  R  T  F  Y  L  R  F  L  *  R  W  Q  L  F  *  L  M  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11082" stop="11167"/>
                    <exon start="11248" stop="11411"/>
                    <exon start="12032" stop="12195"/>
                    <exon start="12831" stop="12950"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTGVFLLSLLRLLAQAVESKLYRPFCYSQVGGVEMTTVPGQLVWEIVKKNNSFLVKEFGNGTAGVVFSKEPNNLYNLHSYKHSGLANKKTVTIQPGGKDQSVLLATSKTKKQNKPSSLLNKSVMKKEFRCMAKAVSNQVADNYYRPDLKKASLARLSAVNKSLKIAKSGVKKRNRQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11111" e_stop="11167"/>
            <exon e_start="11248" e_stop="11411"/>
            <exon e_start="12032" e_stop="12195"/>
            <exon e_start="12536" e_stop="12670"/>
            <exon e_start="12831" e_stop="13133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.671" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11111" e_stop="11167" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.908">
            <gDNA_intron_boundary i_start="11168" i_stop="11247" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11248" e_stop="11411" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11412" i_stop="12031" i_length="620"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12032" e_stop="12195" e_length="164"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.671">
            <gDNA_intron_boundary i_start="12196" i_stop="12535" i_length="340"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12536" e_stop="12670" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12671" i_stop="12830" i_length="160"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12831" e_stop="13133" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11111" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12536" stop="12670"/>
              <exon start="12831" stop="13133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11111" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12536" stop="12670"/>
              <exon start="12831" stop="13128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11112" stop="11167"/>
              <exon start="11248" stop="11411"/>
              <exon start="12032" stop="12195"/>
              <exon start="12536" stop="12670"/>
              <exon start="12831" stop="12853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12128" stop="12195"/>
              <exon start="12536" stop="12670"/>
              <exon start="12831" stop="13128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303995" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGTCTTCTTGCACAGGCCGTCGAATCGAAACTCTACAGACCCTTTTGCTACTCACA : GGTAGGTGGTGTTGAAATGACGACAGTTCCAGGGCAACTGGTTTGGGAGATCGTCAAGAAAAACAACTCATTTTTGGTGAAGGAGTTTGGTAATGGTACCGCCGGTGTCGTATTCAGCAAAGAGCCTAACAATCTTTACAATCTTCACTCTTACAAGCATTCTG : GCCTAGCAAACAAGAAGACTGTGACCATCCAGCCTGGAGGCAAAGATCAATCAGTGTTGCTTGCTACTTCAAAGACCAAGAAACAGAACAAGCCTTCAAGTTTGCTGAATAAATCTGTAATGAAGAAGGAGTTTCGGTGCATGGCCAAGGCTGTATCAAACCAG : GTTATGTATTGCTCTTCATTTCCCGTTATTCCGTTGGTTTTACTAATCTCATTTATGTATTCCCTATCAAACTGCTATCCTCTATTTTAAGCTGTGAGGGTGGTCTAGTAGAAACAACCTCTCTATCTCTATGAG : GTAGCAGATAACTATTACAGGCCAGATCTGAAGAAGGCATCCCTTGCAAGATTGAGTGCTGTGAACAAGAGTCTCAAGATTGCGAAATCTGGTGTCAAGAAGAGAAACAGGCAGGCCTAGATTCCCATTCTAGAATATGTTAGGCTAGGCTGTATGAGCTGCACTTGATTTTTTTTTTCTTCCCAATGTCCTCTTGAGTACCCGAAAGTTTGCTATTTGAGTTCATATTTTTCTAGATTTTTGGCTAAAACGTACGTTCTATTTGAGATTTTTATAAAGATGGCAGTTATTCTGATTAATGAG</gDNA_template>
            <first_frame> A  S  S  C  T  G  R  R  I  E  T  L  Q  T  L  L  L  L  T  :  G  R  W  C  *  N  D  D  S  S  R  A  T  G  L  G  D  R  Q  E  K  Q  L  I  F  G  E  G  V  W  *  W  Y  R  R  C  R  I  Q  Q  R  A  *  Q  S  L  Q  S  S  L  L  Q  A  F  W :   P  S  K  Q  E  D  C  D  H  P  A  W  R  Q  R  S  I  S  V  A  C  Y  F  K  D  Q  E  T  E  Q  A  F  K  F  A  E  *  I  C  N  E  E  G  V  S  V  H  G  Q  G  C  I  K  P   : G  Y  V  L  L  F  I  S  R  Y  S  V  G  F  T  N  L  I  Y  V  F  P  I  K  L  L  S  S  I  L  S  C  E  G  G  L  V  E  T  T  S  L  S  L  *   : G  S  R  *  L  L  Q  A  R  S  E  E  G  I  P  C  K  I  E  C  C  E  Q  E  S  Q  D  C  E  I  W  C  Q  E  E  K  Q  A  G  L  D  S  H  S  R  I  C  *  A  R  L  Y  E  L  H  L  I  F  F  F  F  P  M  S  S  *  V  P  E  S  L  L  F  E  F  I  F  F  *  I  F  G  *  N  V  R  S  I  *  D  F  Y  K  D  G  S  Y  S  D  *  *  </first_frame>
            <second_frame>  R  L  L  A  Q  A  V  E  S  K  L  Y  R  P  F  C  Y  S  Q :   V  G  G  V  E  M  T  T  V  P  G  Q  L  V  W  E  I  V  K  K  N  N  S  F  L  V  K  E  F  G  N  G  T  A  G  V  V  F  S  K  E  P  N  N  L  Y  N  L  H  S  Y  K  H  S   : G  L  A  N  K  K  T  V  T  I  Q  P  G  G  K  D  Q  S  V  L  L  A  T  S  K  T  K  K  Q  N  K  P  S  S  L  L  N  K  S  V  M  K  K  E  F  R  C  M  A  K  A  V  S  N  Q  :  V  M  Y  C  S  S  F  P  V  I  P  L  V  L  L  I  S  F  M  Y  S  L  S  N  C  Y  P  L  F  *  A  V  R  V  V  *  *  K  Q  P  L  Y  L  Y  E  :  V  A  D  N  Y  Y  R  P  D  L  K  K  A  S  L  A  R  L  S  A  V  N  K  S  L  K  I  A  K  S  G  V  K  K  R  N  R  Q  A  *  I  P  I  L  E  Y  V  R  L  G  C  M  S  C  T  *  F  F  F  S  S  Q  C  P  L  E  Y  P  K  V  C  Y  L  S  S  Y  F  S  R  F  L  A  K  T  Y  V  L  F  E  I  F  I  K  M  A  V  I  L  I  N  E </second_frame>
            <third_frame>   V  F  L  H  R  P  S  N  R  N  S  T  D  P  F  A  T  H   : R  *  V  V  L  K  *  R  Q  F  Q  G  N  W  F  G  R  S  S  R  K  T  T  H  F  W  *  R  S  L  V  M  V  P  P  V  S  Y  S  A  K  S  L  T  I  F  T  I  F  T  L  T  S  I  L  :  A  *  Q  T  R  R  L  *  P  S  S  L  E  A  K  I  N  Q  C  C  L  L  L  Q  R  P  R  N  R  T  S  L  Q  V  C  *  I  N  L  *  *  R  R  S  F  G  A  W  P  R  L  Y  Q  T  R :   L  C  I  A  L  H  F  P  L  F  R  W  F  Y  *  S  H  L  C  I  P  Y  Q  T  A  I  L  Y  F  K  L  *  G  W  S  S  R  N  N  L  S  I  S  M  R :   *  Q  I  T  I  T  G  Q  I  *  R  R  H  P  L  Q  D  *  V  L  *  T  R  V  S  R  L  R  N  L  V  S  R  R  E  T  G  R  P  R  F  P  F  *  N  M  L  G  *  A  V  *  A  A  L  D  F  F  F  L  P  N  V  L  L  S  T  R  K  F  A  I  *  V  H  I  F  L  D  F  W  L  K  R  T  F  Y  L  R  F  L  *  R  W  Q  L  F  *  L  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11112" stop="11167"/>
                    <exon start="11248" stop="11411"/>
                    <exon start="12032" stop="12195"/>
                    <exon start="12536" stop="12625"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLLAQAVESKLYRPFCYSQVGGVEMTTVPGQLVWEIVKKNNSFLVKEFGNGTAGVVFSKEPNNLYNLHSYKHSGLANKKTVTIQPGGKDQSVLLATSKTKKQNKPSSLLNKSVMKKEFRCMAKAVSNQVMYCSSFPVIPLVLLISFMYSLSNCYPLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="13903" PGL_stop="14973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13903" e_stop="14295"/>
            <exon e_start="14394" e_stop="14973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="13903" e_stop="14295" e_length="393"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14296" i_stop="14393" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="14394" e_stop="14973" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13903" stop="14295"/>
              <exon start="14394" stop="14904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13953" stop="14295"/>
              <exon start="14394" stop="14482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13954" stop="14295"/>
              <exon start="14394" stop="14677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13958" stop="14295"/>
              <exon start="14394" stop="14839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13965" stop="14295"/>
              <exon start="14394" stop="14753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13974" stop="14295"/>
              <exon start="14394" stop="14904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13974" stop="14295"/>
              <exon start="14394" stop="14902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14004" stop="14295"/>
              <exon start="14394" stop="14753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14012" stop="14295"/>
              <exon start="14394" stop="14751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14028" stop="14295"/>
              <exon start="14394" stop="14901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14104" stop="14295"/>
              <exon start="14394" stop="14973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14110" stop="14295"/>
              <exon start="14394" stop="14753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14135" stop="14295"/>
              <exon start="14394" stop="14737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14143" stop="14295"/>
              <exon start="14394" stop="14902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14167" stop="14295"/>
              <exon start="14394" stop="14879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370645" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14175" stop="14295"/>
              <exon start="14394" stop="14904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577633" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14429" stop="14879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270326" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14557" stop="14942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14585" stop="14904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14655" stop="14973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14667" stop="14904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCCCTACAAAATTGAGTGGGCATATCCAAAATCGGAAAGGGAGAACTGCTAACCCTAACTTCAGAAATTGAAAAGGTGATTGATTGATCAAAGGCGAAGAATCGCCAAAAACAATCGAATCACCAAAGGTTAGAAAATGGGAAACGCCGAGAAATTGATGAATCAGATCATGGAGCTCAAGTTCACATCGAAGAGTCTCCAACGCCAAGCCCGAAAATGCGAGAAAGACGAAAAGTCTGAGAAGCTTAAGGTCAAGAAGGCCATCGAGAAAGGTAACATGGACGGCGCTAGAATTTATGCTGAAAACGCCATCCGCAAGCGCAGCGAACAGATGAACTATCTCCGTCTCTCCTCTCGCCTTGACGCCGTTGTGGCTCGTCTGGATACTCAG : GCGAAGATGACGACAATCAGCAAGTCAATGTCCTCGATCGTCAAATCACTGGAGTCTTCACTCAACACAGGGAATCTACAGAAAATGTCAGAGACGATGGATTCATTCGAGCGTCAGTTTGTGAATATGGAGGTTCAAGCTGAATTTATGGAGAGTTCTATGGCTGGAAGTACTTCCTTATCGACCCCAGAGGACCAGGTGGGCAGCCTGATGCAACAGGTGGCTGATGACTATGGACTCGAGGTGTCCGTGGGGCTTCCGCAAGCAGCGGGCCATGCTATATCTTCTAAGGACGAGGAGAAGGTCAGTGAGGATGATCTGTCCAGGCGTCTTGCCGAGCTCAAGGCGCGTGGGTAATTGAGAAACTGAAGATTCTTCTGTTAATATAGAACCTTTGGTATTGGTGTAATGTGATACAGTATGTGGAGTTTTATCTGTTGCATACATTAAGATTGAACACTTCTATGTACATTTTACTCTCTTGTGATTGTGTAGTCAATTTGCTTTACCAATTGAGCCTGTGACATCTGTATGTTTGCATTATTAGACATTGCAGCATCTTAAGCCTTTTCTCATGTAG</gDNA_template>
            <first_frame> W  P  Y  K  I  E  W  A  Y  P  K  S  E  R  E  N  C  *  P  *  L  Q  K  L  K  R  *  L  I  D  Q  R  R  R  I  A  K  N  N  R  I  T  K  G  *  K  M  G  N  A  E  K  L  M  N  Q  I  M  E  L  K  F  T  S  K  S  L  Q  R  Q  A  R  K  C  E  K  D  E  K  S  E  K  L  K  V  K  K  A  I  E  K  G  N  M  D  G  A  R  I  Y  A  E  N  A  I  R  K  R  S  E  Q  M  N  Y  L  R  L  S  S  R  L  D  A  V  V  A  R  L  D  T  Q  :  A  K  M  T  T  I  S  K  S  M  S  S  I  V  K  S  L  E  S  S  L  N  T  G  N  L  Q  K  M  S  E  T  M  D  S  F  E  R  Q  F  V  N  M  E  V  Q  A  E  F  M  E  S  S  M  A  G  S  T  S  L  S  T  P  E  D  Q  V  G  S  L  M  Q  Q  V  A  D  D  Y  G  L  E  V  S  V  G  L  P  Q  A  A  G  H  A  I  S  S  K  D  E  E  K  V  S  E  D  D  L  S  R  R  L  A  E  L  K  A  R  G  *  L  R  N  *  R  F  F  C  *  Y  R  T  F  G  I  G  V  M  *  Y  S  M  W  S  F  I  C  C  I  H  *  D  *  T  L  L  C  T  F  Y  S  L  V  I  V  *  S  I  C  F  T  N  *  A  C  D  I  C  M  F  A  L  L  D  I  A  A  S  *  A  F  S  H  V  </first_frame>
            <second_frame>  G  P  T  K  L  S  G  H  I  Q  N  R  K  G  R  T  A  N  P  N  F  R  N  *  K  G  D  *  L  I  K  G  E  E  S  P  K  T  I  E  S  P  K  V  R  K  W  E  T  P  R  N  *  *  I  R  S  W  S  S  S  S  H  R  R  V  S  N  A  K  P  E  N  A  R  K  T  K  S  L  R  S  L  R  S  R  R  P  S  R  K  V  T  W  T  A  L  E  F  M  L  K  T  P  S  A  S  A  A  N  R  *  T  I  S  V  S  P  L  A  L  T  P  L  W  L  V  W  I  L  R :   R  R  *  R  Q  S  A  S  Q  C  P  R  S  S  N  H  W  S  L  H  S  T  Q  G  I  Y  R  K  C  Q  R  R  W  I  H  S  S  V  S  L  *  I  W  R  F  K  L  N  L  W  R  V  L  W  L  E  V  L  P  Y  R  P  Q  R  T  R  W  A  A  *  C  N  R  W  L  M  T  M  D  S  R  C  P  W  G  F  R  K  Q  R  A  M  L  Y  L  L  R  T  R  R  R  S  V  R  M  I  C  P  G  V  L  P  S  S  R  R  V  G  N  *  E  T  E  D  S  S  V  N  I  E  P  L  V  L  V  *  C  D  T  V  C  G  V  L  S  V  A  Y  I  K  I  E  H  F  Y  V  H  F  T  L  L  *  L  C  S  Q  F  A  L  P  I  E  P  V  T  S  V  C  L  H  Y  *  T  L  Q  H  L  K  P  F  L  M  * </second_frame>
            <third_frame>   A  L  Q  N  *  V  G  I  S  K  I  G  K  G  E  L  L  T  L  T  S  E  I  E  K  V  I  D  *  S  K  A  K  N  R  Q  K  Q  S  N  H  Q  R  L  E  N  G  K  R  R  E  I  D  E  S  D  H  G  A  Q  V  H  I  E  E  S  P  T  P  S  P  K  M  R  E  R  R  K  V  *  E  A  *  G  Q  E  G  H  R  E  R  *  H  G  R  R  *  N  L  C  *  K  R  H  P  Q  A  Q  R  T  D  E  L  S  P  S  L  L  S  P  *  R  R  C  G  S  S  G  Y  S   : G  E  D  D  D  N  Q  Q  V  N  V  L  D  R  Q  I  T  G  V  F  T  Q  H  R  E  S  T  E  N  V  R  D  D  G  F  I  R  A  S  V  C  E  Y  G  G  S  S  *  I  Y  G  E  F  Y  G  W  K  Y  F  L  I  D  P  R  G  P  G  G  Q  P  D  A  T  G  G  *  *  L  W  T  R  G  V  R  G  A  S  A  S  S  G  P  C  Y  I  F  *  G  R  G  E  G  Q  *  G  *  S  V  Q  A  S  C  R  A  Q  G  A  W  V  I  E  K  L  K  I  L  L  L  I  *  N  L  W  Y  W  C  N  V  I  Q  Y  V  E  F  Y  L  L  H  T  L  R  L  N  T  S  M  Y  I  L  L  S  C  D  C  V  V  N  L  L  Y  Q  L  S  L  *  H  L  Y  V  C  I  I  R  H  C  S  I  L  S  L  F  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14038" stop="14295"/>
                    <exon start="14394" stop="14750"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGNAEKLMNQIMELKFTSKSLQRQARKCEKDEKSEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYLRLSSRLDAVVARLDTQAKMTTISKSMSSIVKSLESSLNTGNLQKMSETMDSFERQFVNMEVQAEFMESSMAGSTSLSTPEDQVGSLMQQVADDYGLEVSVGLPQAAGHAISSKDEEKVSEDDLSRRLAELKARG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="20585" PGL_stop="19592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20585" e_stop="19592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="20585" e_stop="19592" e_length="994"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20585" stop="20195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20583" stop="19848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20582" stop="20032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20582" stop="20032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20575" stop="19800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20291" stop="19592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20100" stop="19610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19950" stop="19610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220518" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAACACTCTGTTCTCTCAATAAGCCTAAAAAACAGAGCAAACAGAAGCTCACAATATGCAAGATCCATCATCAATATATTCACAGATCAATCCTCAGTTCCCAGATCAACAAGTCCTGAAATGCCCTAGATGTGATTCAATCAACACGAAGTTTTGTTACTACAACAATTACAATCTTTCTCAGCCACGCCATTTTTGTAAGAATTGTAAAAGGTATTGGACTAAAGGAGGTATTTTGAGGAATATTCCAGTTGGTGGAAGCTCTCGTAAGAACACAAAACGATCTTCTTCGAATAGCTGTAAACGCTCCTCAACGATGACGATTTCATCTTCAACTTCATCAGAACAAAATTCAAAAACAGAGCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTAGCATCAAACGGGCCGGAGATAGGGAATTTTTTAAATGTTTTGAATCCTAACGGGCCCGATTCGGGCTCAGACGCTGCTGCCGCTCAAAGTGGGAATAGTAATAATAATCATGAATTTTTGGGTGAAGATTCTAATTGTTGGAATGGTACTAATGGTTGGGCTGATCTTGCTATTTACACCCCAGGTTCAACCTTTCAGTAATTAATTAATTAATTAATTACAATAGATTATTAGAACTTTGTATTAGTACTACTAATACTTATGAAAATGCACTTATCTTTTTCTAAGCATGAATGTTGGAAGTGTTGTTTGCGGATTGTATACTATTACTAGTAGTTTTCGTATCAGCTTGTCGTGCATCTCAGTTTTTTATTAATACATGTACTGAGTGACTCAGTTCATGTTTACGAAAACTTAATATTTTTACTTTGCATCAAACTAGTTTTGTTTGGGTAATGCTTAGTGTACGTACATAATTGTGTGTGATTTGAGATTTCATGTATGTTATTCCAAGGGAAATGATAAATTATGAAATTTATTACTTTTGTTTTTTATACTG</gDNA_template>
            <first_frame> N  N  T  L  F  S  Q  *  A  *  K  T  E  Q  T  E  A  H  N  M  Q  D  P  S  S  I  Y  S  Q  I  N  P  Q  F  P  D  Q  Q  V  L  K  C  P  R  C  D  S  I  N  T  K  F  C  Y  Y  N  N  Y  N  L  S  Q  P  R  H  F  C  K  N  C  K  R  Y  W  T  K  G  G  I  L  R  N  I  P  V  G  G  S  S  R  K  N  T  K  R  S  S  S  N  S  C  K  R  S  S  T  M  T  I  S  S  S  T  S  S  E  Q  N  S  K  T  E  H  F  D  T  P  V  V  R  N  S  P  I  V  D  A  N  G  P  F  G  S  L  L  A  S  N  G  P  E  I  G  N  F  L  N  V  L  N  P  N  G  P  D  S  G  S  D  A  A  A  A  Q  S  G  N  S  N  N  N  H  E  F  L  G  E  D  S  N  C  W  N  G  T  N  G  W  A  D  L  A  I  Y  T  P  G  S  T  F  Q  *  L  I  N  *  L  I  T  I  D  Y  *  N  F  V  L  V  L  L  I  L  M  K  M  H  L  S  F  S  K  H  E  C  W  K  C  C  L  R  I  V  Y  Y  Y  *  *  F  S  Y  Q  L  V  V  H  L  S  F  L  L  I  H  V  L  S  D  S  V  H  V  Y  E  N  L  I  F  L  L  C  I  K  L  V  L  F  G  *  C  L  V  Y  V  H  N  C  V  *  F  E  I  S  C  M  L  F  Q  G  K  *  *  I  M  K  F  I  T  F  V  F  Y  T  </first_frame>
            <second_frame>  I  T  L  C  S  L  N  K  P  K  K  Q  S  K  Q  K  L  T  I  C  K  I  H  H  Q  Y  I  H  R  S  I  L  S  S  Q  I  N  K  S  *  N  A  L  D  V  I  Q  S  T  R  S  F  V  T  T  T  I  T  I  F  L  S  H  A  I  F  V  R  I  V  K  G  I  G  L  K  E  V  F  *  G  I  F  Q  L  V  E  A  L  V  R  T  Q  N  D  L  L  R  I  A  V  N  A  P  Q  R  *  R  F  H  L  Q  L  H  Q  N  K  I  Q  K  Q  S  I  L  I  P  L  L  F  G  T  A  R  L  L  T  P  M  G  L  S  A  R  Y  *  H  Q  T  G  R  R  *  G  I  F  *  M  F  *  I  L  T  G  P  I  R  A  Q  T  L  L  P  L  K  V  G  I  V  I  I  I  M  N  F  W  V  K  I  L  I  V  G  M  V  L  M  V  G  L  I  L  L  F  T  P  Q  V  Q  P  F  S  N  *  L  I  N  *  L  Q  *  I  I  R  T  L  Y  *  Y  Y  *  Y  L  *  K  C  T  Y  L  F  L  S  M  N  V  G  S  V  V  C  G  L  Y  T  I  T  S  S  F  R  I  S  L  S  C  I  S  V  F  Y  *  Y  M  Y  *  V  T  Q  F  M  F  T  K  T  *  Y  F  Y  F  A  S  N  *  F  C  L  G  N  A  *  C  T  Y  I  I  V  C  D  L  R  F  H  V  C  Y  S  K  G  N  D  K  L  *  N  L  L  L  L  F  F  I  L </second_frame>
            <third_frame>   *  H  S  V  L  S  I  S  L  K  N  R  A  N  R  S  S  Q  Y  A  R  S  I  I  N  I  F  T  D  Q  S  S  V  P  R  S  T  S  P  E  M  P  *  M  *  F  N  Q  H  E  V  L  L  L  Q  Q  L  Q  S  F  S  A  T  P  F  L  *  E  L  *  K  V  L  D  *  R  R  Y  F  E  E  Y  S  S  W  W  K  L  S  *  E  H  K  T  I  F  F  E  *  L  *  T  L  L  N  D  D  D  F  I  F  N  F  I  R  T  K  F  K  N  R  A  F  *  Y  P  C  C  S  E  Q  P  D  C  *  R  Q  W  A  F  R  L  A  T  S  I  K  R  A  G  D  R  E  F  F  K  C  F  E  S  *  R  A  R  F  G  L  R  R  C  C  R  S  K  W  E  *  *  *  *  S  *  I  F  G  *  R  F  *  L  L  E  W  Y  *  W  L  G  *  S  C  Y  L  H  P  R  F  N  L  S  V  I  N  *  L  I  N  Y  N  R  L  L  E  L  C  I  S  T  T  N  T  Y  E  N  A  L  I  F  F  *  A  *  M  L  E  V  L  F  A  D  C  I  L  L  L  V  V  F  V  S  A  C  R  A  S  Q  F  F  I  N  T  C  T  E  *  L  S  S  C  L  R  K  L  N  I  F  T  L  H  Q  T  S  F  V  W  V  M  L  S  V  R  T  *  L  C  V  I  *  D  F  M  Y  V  I  P  R  E  M  I  N  Y  E  I  Y  Y  F  C  F  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20555" stop="19950"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTEQTEAHNMQDPSSIYSQINPQFPDQQVLKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGILRNIPVGGSSRKNTKRSSSNSCKRSSTMTISSSTSSEQNSKTEHFDTPVVRNSPIVDANGPFGSLLASNGPEIGNFLNVLNPNGPDSGSDAAAAQSGNSNNNHEFLGEDSNCWNGTNGWADLAIYTPGSTFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="25002" PGL_stop="24618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25002" e_stop="24618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="25002" e_stop="24618" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25002" stop="24618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACTCGAGGTTCTACCATTTCTCACGTGCAGAATCCATGCCGGCATATATTACAAGTTCTTAATGTCATAGCTCAAAGAATGGTCAATTTAGTAACTCACTTGTCAACAACCCAACGTTCTTGTTCTCTTCCTACCTTCACCCTTCTCAAGATCTCCAATGTCTTTATAGTTCTCCCCTCAAGCAAAACTGTTAGATATGCAGAAATTATCACTAGATGTAAGGTAAATGCTGTTTTACTTCAATCCTGCTGGAAAAGACCTGCTGGCTTTACTTTATTGGGTAGAAGTATTTTTTGTAGGATAATTTGATGTTTTTTTTTCTTTGCTATAGATTATCGAACTAAAGTAGCTTTGTTTTCTTGTCCTGTAAAAGTTCAAGGGA</gDNA_template>
            <first_frame> P  T  R  G  S  T  I  S  H  V  Q  N  P  C  R  H  I  L  Q  V  L  N  V  I  A  Q  R  M  V  N  L  V  T  H  L  S  T  T  Q  R  S  C  S  L  P  T  F  T  L  L  K  I  S  N  V  F  I  V  L  P  S  S  K  T  V  R  Y  A  E  I  I  T  R  C  K  V  N  A  V  L  L  Q  S  C  W  K  R  P  A  G  F  T  L  L  G  R  S  I  F  C  R  I  I  *  C  F  F  F  F  A  I  D  Y  R  T  K  V  A  L  F  S  C  P  V  K  V  Q  G  </first_frame>
            <second_frame>  Q  L  E  V  L  P  F  L  T  C  R  I  H  A  G  I  Y  Y  K  F  L  M  S  *  L  K  E  W  S  I  *  *  L  T  C  Q  Q  P  N  V  L  V  L  F  L  P  S  P  F  S  R  S  P  M  S  L  *  F  S  P  Q  A  K  L  L  D  M  Q  K  L  S  L  D  V  R  *  M  L  F  Y  F  N  P  A  G  K  D  L  L  A  L  L  Y  W  V  E  V  F  F  V  G  *  F  D  V  F  F  S  L  L  *  I  I  E  L  K  *  L  C  F  L  V  L  *  K  F  K  G </second_frame>
            <third_frame>   N  S  R  F  Y  H  F  S  R  A  E  S  M  P  A  Y  I  T  S  S  *  C  H  S  S  K  N  G  Q  F  S  N  S  L  V  N  N  P  T  F  L  F  S  S  Y  L  H  P  S  Q  D  L  Q  C  L  Y  S  S  P  L  K  Q  N  C  *  I  C  R  N  Y  H  *  M  *  G  K  C  C  F  T  S  I  L  L  E  K  T  C  W  L  Y  F  I  G  *  K  Y  F  L  *  D  N  L  M  F  F  F  L  C  Y  R  L  S  N  *  S  S  F  V  F  L  S  C  K  S  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25002" stop="24691"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTRGSTISHVQNPCRHILQVLNVIAQRMVNLVTHLSTTQRSCSLPTFTLLKISNVFIVLPSSKTVRYAEIITRCKVNAVLLQSCWKRPAGFTLLGRSIFCRII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="28076" PGL_stop="25164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28076" e_stop="28032"/>
            <exon e_start="27939" e_stop="27821"/>
            <exon e_start="27685" e_stop="27562"/>
            <exon e_start="27327" e_stop="27204"/>
            <exon e_start="25903" e_stop="25835"/>
            <exon e_start="25743" e_stop="25652"/>
            <exon e_start="25567" e_stop="25493"/>
            <exon e_start="25402" e_stop="25332"/>
            <exon e_start="25212" e_stop="25164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="0.978" e_score="0.822"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.822">
            <gDNA_exon_boundary e_start="28076" e_stop="28032" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="0.978">
            <gDNA_intron_boundary i_start="28031" i_stop="27940" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27939" e_stop="27821" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="27820" i_stop="27686" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27685" e_stop="27562" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="27561" i_stop="27328" i_length="234"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27327" e_stop="27204" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="27203" i_stop="25904" i_length="1300"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25903" e_stop="25835" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.945">
            <gDNA_intron_boundary i_start="25834" i_stop="25744" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25743" e_stop="25652" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="25651" i_stop="25568" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25567" e_stop="25493" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.889">
            <gDNA_intron_boundary i_start="25492" i_stop="25403" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25402" e_stop="25332" e_length="71"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25331" i_stop="25213" i_length="119"/>
          </intron>
          <exon e_serial="9" e_score="0.977">
            <gDNA_exon_boundary e_start="25212" e_stop="25164" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28076" stop="28032"/>
              <exon start="27939" stop="27821"/>
              <exon start="27685" stop="27562"/>
              <exon start="27327" stop="27204"/>
              <exon start="25903" stop="25835"/>
              <exon start="25743" stop="25670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27925" stop="27821"/>
              <exon start="27685" stop="27562"/>
              <exon start="27327" stop="27204"/>
              <exon start="25903" stop="25835"/>
              <exon start="25743" stop="25652"/>
              <exon start="25567" stop="25520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27892" stop="27821"/>
              <exon start="27685" stop="27562"/>
              <exon start="27327" stop="27204"/>
              <exon start="25903" stop="25835"/>
              <exon start="25743" stop="25652"/>
              <exon start="25567" stop="25493"/>
              <exon start="25402" stop="25394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27823" stop="27821"/>
              <exon start="27685" stop="27562"/>
              <exon start="27327" stop="27204"/>
              <exon start="25903" stop="25835"/>
              <exon start="25743" stop="25652"/>
              <exon start="25567" stop="25493"/>
              <exon start="25402" stop="25332"/>
              <exon start="25212" stop="25170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27823" stop="27821"/>
              <exon start="27685" stop="27562"/>
              <exon start="27327" stop="27204"/>
              <exon start="25903" stop="25835"/>
              <exon start="25743" stop="25675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27822" stop="27821"/>
              <exon start="27685" stop="27562"/>
              <exon start="27327" stop="27204"/>
              <exon start="25903" stop="25835"/>
              <exon start="25743" stop="25652"/>
              <exon start="25567" stop="25493"/>
              <exon start="25402" stop="25332"/>
              <exon start="25212" stop="25164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27822" stop="27821"/>
              <exon start="27685" stop="27562"/>
              <exon start="27327" stop="27204"/>
              <exon start="25903" stop="25835"/>
              <exon start="25743" stop="25652"/>
              <exon start="25567" stop="25497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCCATGCACATGACTATCATATCAATTCTATTTCAACTAACTG : TGATGGGGAAACATTTATATCAGCTGATGATCTCCGTATAAACCTTTGGAACTTGCAAATAAGCAATCAAAGTTTCAATATTATTGATGTCAAGCCAACAAATATGGAAGATCTAACTG : AGGTGATAACTTCAGCTGAATTTCACCCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTT : GTTTGAGGAGCAGGAAACTCCTGGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAG : CTATGGGATATAAACATGGATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAG : CTGTGTGATTTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCGAGTAGCAACTGGATCTTATAG : CAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGCAGAAGCGACTACATTAGAAGCGAGCAAAAACCCCAG : GAGACAAGTCCAGACCCCTTCGAGGCCTTCCAGGTCCTTGAGCAGCAGTATAACCCGTGTTGTCAGGAGAG : GATCAGAAAGTCCTGGGGCTGATGCCAATGGAAACTCATTTGATTTCAC</gDNA_template>
            <first_frame> C  P  C  T  *  L  S  Y  Q  F  Y  F  N  *  L  :  *  W  G  N  I  Y  I  S  *  *  S  P  Y  K  P  L  E  L  A  N  K  Q  S  K  F  Q  Y  Y  *  C  Q  A  N  K  Y  G  R  S  N  * :   G  D  N  F  S  *  I  S  P  Y  S  L  *  H  I  G  L  *  *  F  K  R  I  N  T  F  G  R  Y  A  A  V  S  I  V  R  L  A  L  *  V  :  V  *  G  A  G  N  S  W  L  K  V  L  F  Y  R  D  N  C  F  N  F  R  Y  K  I  C  K  G  W  K  I  H  T  Q  S  *  L  H  D  P  E   : A  M  G  Y  K  H  G  F  W  S  S  F  N  F  S  G  S  *  T  F  E  T  K   : A  V  *  F  I  *  E  *  F  H  L  *  *  I  R  V  L  P  *  W  *  W  F  S  S  S  N  W  I  L  *  :  Q  S  F  S  C  V  R  L  C  S  G  K  R  R  S  D  Y  I  R  S  E  Q  K  P  Q  :  E  T  S  P  D  P  F  E  A  F  Q  V  L  E  Q  Q  Y  N  P  C  C  Q  E  R :   I  R  K  S  W  G  *  C  Q  W  K  L  I  *  F  H </first_frame>
            <second_frame>  A  H  A  H  D  Y  H  I  N  S  I  S  T  N  C :   D  G  E  T  F  I  S  A  D  D  L  R  I  N  L  W  N  L  Q  I  S  N  Q  S  F  N  I  I  D  V  K  P  T  N  M  E  D  L  T   : E  V  I  T  S  A  E  F  H  P  T  H  C  N  I  L  A  Y  S  S  S  R  G  S  I  R  L  V  D  M  R  Q  S  A  L  C  D  S  H  S  K  L :   F  E  E  Q  E  T  P  G  S  R  S  F  F  T  E  I  I  A  S  I  S  D  I  K  F  A  K  A  G  R  Y  I  L  S  R  D  Y  M  T  L  K  :  L  W  D  I  N  M  D  S  G  P  V  S  T  F  Q  V  H  E  H  L  R  P  K  :  L  C  D  L  Y  E  N  D  S  I  F  D  K  F  E  C  C  L  S  G  D  G  S  R  V  A  T  G  S  Y  S :   N  L  F  R  V  F  G  C  A  P  G  S  A  E  A  T  T  L  E  A  S  K  N  P  R :   R  Q  V  Q  T  P  S  R  P  S  R  S  L  S  S  S  I  T  R  V  V  R  R   : G  S  E  S  P  G  A  D  A  N  G  N  S  F  D  F   </second_frame>
            <third_frame>   P  M  H  M  T  I  I  S  I  L  F  Q  L  T   : V  M  G  K  H  L  Y  Q  L  M  I  S  V  *  T  F  G  T  C  K  *  A  I  K  V  S  I  L  L  M  S  S  Q  Q  I  W  K  I  *  L  :  R  *  *  L  Q  L  N  F  T  L  L  T  V  T  Y  W  L  I  V  V  Q  E  D  Q  Y  V  W  *  I  C  G  S  Q  H  C  A  T  R  T  L  S   : C  L  R  S  R  K  L  L  A  Q  G  P  F  L  P  R  *  L  L  Q  F  Q  I  *  N  L  Q  R  L  E  D  T  Y  S  V  V  T  T  *  P  *  S :   Y  G  I  *  T  W  I  L  V  Q  F  Q  L  F  R  F  M  N  I  *  D  Q  S :   C  V  I  Y  M  R  M  I  P  S  L  I  N  S  S  V  A  L  V  V  M  V  L  E  *  Q  L  D  L  I   : A  I  F  F  V  C  S  V  V  L  R  E  A  Q  K  R  L  H  *  K  R  A  K  T  P   : G  D  K  S  R  P  L  R  G  L  P  G  P  *  A  A  V  *  P  V  L  S  G  E  :  D  Q  K  V  L  G  L  M  P  M  E  T  H  L  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28075" stop="28032"/>
                    <exon start="27939" stop="27821"/>
                    <exon start="27685" stop="27562"/>
                    <exon start="27327" stop="27204"/>
                    <exon start="25903" stop="25835"/>
                    <exon start="25743" stop="25652"/>
                    <exon start="25567" stop="25493"/>
                    <exon start="25402" stop="25332"/>
                    <exon start="25212" stop="25166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHAHDYHINSISTNCDGETFISADDLRINLWNLQISNQSFNIIDVKPTNMEDLTEVITSAEFHPTHCNILAYSSSRGSIRLVDMRQSALCDSHSKLFEEQETPGSRSFFTEIIASISDIKFAKAGRYILSRDYMTLKLWDINMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGSRVATGSYSNLFRVFGCAPGSAEATTLEASKNPRRQVQTPSRPSRSLSSSITRVVRRGSESPGADANGNSFDF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="32364" PGL_stop="34233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32364" e_stop="32389"/>
            <exon e_start="33465" e_stop="34233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.692"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.692">
            <gDNA_exon_boundary e_start="32364" e_stop="32389" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32390" i_stop="33464" i_length="1075"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33465" e_stop="34233" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32364" stop="32389"/>
              <exon start="33465" stop="34233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716082" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTAGTTACTTATATTTTTTATAG : AAAATGAAAGTCGCCAAATATTTCCAATATTACAACACTCGTATATAACAAATAATTACTCCAAATGCTTAATGAACCTCAAATTTGTTTATTTGATCTTCTTGTAGAAGTTCTTGGAGCATATTCTACCTGCTCATATATAAAGGGACTTCTCTATTGATAAGGCTACAAGCAATTAAGCCATATATACTCCAAATTAGTACGAGCTCTCACTAATTCATGGATTCATCATAATAAGATATCAAGAAGATCAAAATTTTATCAAGTTCCACAGAATTGTATAGCTAGAAAGTACAATAATCAAGCTAACAGGAAAACCATTTAAGAAGAAGTATGACCACAAGATACAACTAAGCCTATGCTAGTACCAGAAGACTGATTGGTCATTGGTAGCTTCTTCTCTTTGGTTCTCCTCTGATGAAGCAAGAAGCAATTCTACCTTTTACTGAGTCTTGGCATAACCTAGATCATTTTCACTATGATAATAACAAATCAACGAGGCTCCCTTTTGATCAGTCAATCTTCACAGATGAGTAGATTTTCCTAACAAACCAGAAGGAAGCATAGAATCCGATGGTTCCTGTTACTACAAAGAAGGCGTATGATGCAATCAACATATAGCCGAAATACAGGATTCCTGAAACCAACTTTGTGATTTCCAACTTGGTGAAGAAGTAGAAGACGGAGTAGAGAAACAGGTATAAAGCAGAGGATCCAGCAGTCAGATATGCTCTCCACCACCAATGATAGTCTTCGCTGCACAACTGGA</gDNA_template>
            <first_frame> L  L  V  T  Y  I  F  Y  R :   K  *  K  S  P  N  I  S  N  I  T  T  L  V  Y  N  K  *  L  L  Q  M  L  N  E  P  Q  I  C  L  F  D  L  L  V  E  V  L  G  A  Y  S  T  C  S  Y  I  K  G  L  L  Y  *  *  G  Y  K  Q  L  S  H  I  Y  S  K  L  V  R  A  L  T  N  S  W  I  H  H  N  K  I  S  R  R  S  K  F  Y  Q  V  P  Q  N  C  I  A  R  K  Y  N  N  Q  A  N  R  K  T  I  *  E  E  V  *  P  Q  D  T  T  K  P  M  L  V  P  E  D  *  L  V  I  G  S  F  F  S  L  V  L  L  *  *  S  K  K  Q  F  Y  L  L  L  S  L  G  I  T  *  I  I  F  T  M  I  I  T  N  Q  R  G  S  L  L  I  S  Q  S  S  Q  M  S  R  F  S  *  Q  T  R  R  K  H  R  I  R  W  F  L  L  L  Q  R  R  R  M  M  Q  S  T  Y  S  R  N  T  G  F  L  K  P  T  L  *  F  P  T  W  *  R  S  R  R  R  S  R  E  T  G  I  K  Q  R  I  Q  Q  S  D  M  L  S  T  T  N  D  S  L  R  C  T  T  G </first_frame>
            <second_frame>  C  *  L  L  I  F  F  I   : E  N  E  S  R  Q  I  F  P  I  L  Q  H  S  Y  I  T  N  N  Y  S  K  C  L  M  N  L  K  F  V  Y  L  I  F  L  *  K  F  L  E  H  I  L  P  A  H  I  *  R  D  F  S  I  D  K  A  T  S  N  *  A  I  Y  T  P  N  *  Y  E  L  S  L  I  H  G  F  I  I  I  R  Y  Q  E  D  Q  N  F  I  K  F  H  R  I  V  *  L  E  S  T  I  I  K  L  T  G  K  P  F  K  K  K  Y  D  H  K  I  Q  L  S  L  C  *  Y  Q  K  T  D  W  S  L  V  A  S  S  L  W  F  S  S  D  E  A  R  S  N  S  T  F  Y  *  V  L  A  *  P  R  S  F  S  L  *  *  *  Q  I  N  E  A  P  F  *  S  V  N  L  H  R  *  V  D  F  P  N  K  P  E  G  S  I  E  S  D  G  S  C  Y  Y  K  E  G  V  *  C  N  Q  H  I  A  E  I  Q  D  S  *  N  Q  L  C  D  F  Q  L  G  E  E  V  E  D  G  V  E  K  Q  V  *  S  R  G  S  S  S  Q  I  C  S  P  P  P  M  I  V  F  A  A  Q  L   </second_frame>
            <third_frame>   V  S  Y  L  Y  F  L  *  :  K  M  K  V  A  K  Y  F  Q  Y  Y  N  T  R  I  *  Q  I  I  T  P  N  A  *  *  T  S  N  L  F  I  *  S  S  C  R  S  S  W  S  I  F  Y  L  L  I  Y  K  G  T  S  L  L  I  R  L  Q  A  I  K  P  Y  I  L  Q  I  S  T  S  S  H  *  F  M  D  S  S  *  *  D  I  K  K  I  K  I  L  S  S  S  T  E  L  Y  S  *  K  V  Q  *  S  S  *  Q  E  N  H  L  R  R  S  M  T  T  R  Y  N  *  A  Y  A  S  T  R  R  L  I  G  H  W  *  L  L  L  F  G  S  P  L  M  K  Q  E  A  I  L  P  F  T  E  S  W  H  N  L  D  H  F  H  Y  D  N  N  K  S  T  R  L  P  F  D  Q  S  I  F  T  D  E  *  I  F  L  T  N  Q  K  E  A  *  N  P  M  V  P  V  T  T  K  K  A  Y  D  A  I  N  I  *  P  K  Y  R  I  P  E  T  N  F  V  I  S  N  L  V  K  K  *  K  T  E  *  R  N  R  Y  K  A  E  D  P  A  V  R  Y  A  L  H  H  Q  *  *  S  S  L  H  N  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074G21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="34509" PGL_stop="33930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34509" e_stop="33930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34509" e_stop="33930" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34509" stop="33930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307037" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGAAGCTACCTTGGATATAAAAAGCCAGCCATTGAGGACCCTGTTAAGACAAACAAAATACCTAGGCAAATACCAGAGCAGGCTTGGTACATGACACCGTCTTTTTCTGTACTTATTGGGGGTATTCTCCCATTTGGAGCTGTTTTCATTGAACTCTTCTTCATCCTGACCTCTATATGGCTGAACCAGTACTACTACATCTTTGGCTTCCTTTTCATCGTTTTCCTGATCTTGATAATCACATGTGCGGAGATATCCGTTGTGCTCTGTTACTTCCAGTTGTGCAGCGAAGACTATCATTGGTGGTGGAGAGCATATCTGACTGCTGGATCCTCTGCTTTATACCTGTTTCTCTACTCCGTCTTCTACTTCTTCACCAAGTTGGAAATCACAAAGTTGGTTTCAGGAATCCTGTATTTCGGCTATATGTTGATTGCATCATACGCCTTCTTTGTAGTAACAGGAACCATCGGATTCTATGCTTCCTTCTGGTTTGTTAGGAAAATCTACTCATCTGTGAAGATTGACTGATCAAAAGGGAGCCTCGTTGATTTGTTATTATCATAGTGAAAATGATC</gDNA_template>
            <first_frame> L  E  A  T  L  D  I  K  S  Q  P  L  R  T  L  L  R  Q  T  K  Y  L  G  K  Y  Q  S  R  L  G  T  *  H  R  L  F  L  Y  L  L  G  V  F  S  H  L  E  L  F  S  L  N  S  S  S  S  *  P  L  Y  G  *  T  S  T  T  T  S  L  A  S  F  S  S  F  S  *  S  *  *  S  H  V  R  R  Y  P  L  C  S  V  T  S  S  C  A  A  K  T  I  I  G  G  G  E  H  I  *  L  L  D  P  L  L  Y  T  C  F  S  T  P  S  S  T  S  S  P  S  W  K  S  Q  S  W  F  Q  E  S  C  I  S  A  I  C  *  L  H  H  T  P  S  L  *  *  Q  E  P  S  D  S  M  L  P  S  G  L  L  G  K  S  T  H  L  *  R  L  T  D  Q  K  G  A  S  L  I  C  Y  Y  H  S  E  N  D  </first_frame>
            <second_frame>  W  K  L  P  W  I  *  K  A  S  H  *  G  P  C  *  D  K  Q  N  T  *  A  N  T  R  A  G  L  V  H  D  T  V  F  F  C  T  Y  W  G  Y  S  P  I  W  S  C  F  H  *  T  L  L  H  P  D  L  Y  M  A  E  P  V  L  L  H  L  W  L  P  F  H  R  F  P  D  L  D  N  H  M  C  G  D  I  R  C  A  L  L  L  P  V  V  Q  R  R  L  S  L  V  V  E  S  I  S  D  C  W  I  L  C  F  I  P  V  S  L  L  R  L  L  L  L  H  Q  V  G  N  H  K  V  G  F  R  N  P  V  F  R  L  Y  V  D  C  I  I  R  L  L  C  S  N  R  N  H  R  I  L  C  F  L  L  V  C  *  E  N  L  L  I  C  E  D  *  L  I  K  R  E  P  R  *  F  V  I  I  I  V  K  M  I </second_frame>
            <third_frame>   G  S  Y  L  G  Y  K  K  P  A  I  E  D  P  V  K  T  N  K  I  P  R  Q  I  P  E  Q  A  W  Y  M  T  P  S  F  S  V  L  I  G  G  I  L  P  F  G  A  V  F  I  E  L  F  F  I  L  T  S  I  W  L  N  Q  Y  Y  Y  I  F  G  F  L  F  I  V  F  L  I  L  I  I  T  C  A  E  I  S  V  V  L  C  Y  F  Q  L  C  S  E  D  Y  H  W  W  W  R  A  Y  L  T  A  G  S  S  A  L  Y  L  F  L  Y  S  V  F  Y  F  F  T  K  L  E  I  T  K  L  V  S  G  I  L  Y  F  G  Y  M  L  I  A  S  Y  A  F  F  V  V  T  G  T  I  G  F  Y  A  S  F  W  F  V  R  K  I  Y  S  S  V  K  I  D  *  S  K  G  S  L  V  D  L  L  L  S  *  *  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074G21.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34507" stop="33977"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSYLGYKKPAIEDPVKTNKIPRQIPEQAWYMTPSFSVLIGGILPFGAVFIELFFILTSIWLNQYYYIFGFLFIVFLILIITCAEISVVLCYFQLCSEDYHWWWRAYLTAGSSALYLFLYSVFYFFTKLEITKLVSGILYFGYMLIASYAFFVVTGTIGFYASFWFVRKIYSSVKID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="47636" PGL_stop="47863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47636" e_stop="47863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="47636" e_stop="47863" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47636" stop="47863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTGAAAACACTGAAAAATTTTCTTCTCTGCATTTATTTTTTTTTCAAATAAAATCAAAGTGCCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGACGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  E  N  T  E  K  F  S  S  L  H  L  F  F  F  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  D  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  R  E  I </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  K  T  L  K  N  F  L  L  C  I  Y  F  F  F  K  *  N  Q  S  A  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  T  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  *  E  K   </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  K  H  *  K  I  F  F  S  A  F  I  F  F  S  N  K  I  K  V  P  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  R  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  E  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074G21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 213 chains have been computed
$ 
$ memory statistics:
$ 378432 bytes spliced alignments in total
$ 66 spliced alignments have been stored
$ 5733 bytes was the average size of a spliced alignment
$ 19440 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1620 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 232 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:21:27
-->
