<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:45:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375118" ref_strand="+" ref_description="SGN-E375118 [TUS-36-M15]">
      <seq>gcaaactcaaaatttgtcaacggctacagcatatacaacataaaagaacaagagttattttagatggtctcctttatccttatttttttctttctttgaaaatgactatgaagcttataaagccacaactcaaacccatatctcaagacgtatgaacgaacaacctattcttaatgtctcaatttagtttctccttcacatggacgattaagaagcaccaacgatgatgtgctgataggaatgaagatccatttgacaaaaagtcctacatatttcatcacaatgaaatcgattgcagtatgagtggcaactttattgaattctttgcgatctggcttgtggcacggcacctcttaacaagcctaacgttgtatttggcaaaacctctaaggggatcgaaaacagaatcgaatttttttttagtttgctttttgctattgtcgtttttgtttagagttaggcagtgacccatattttctttatttctttattatttgttgaaagttttatttgatgctttctcattatatttgtacatatcatttatttaatgattttgtgtggagacttgtttcaataaatttagattattttatcttttgttcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4441" stop="5648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4741" g_stop="5358" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E375118" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4741" e_stop="5358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCTATTCATATGAT</genome_strand>
        <mrna_strand>GCAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTAGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTATAAAGCCACAACTCAAACCCATATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACATATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGATGCTTTCTCATTATATTTGTACATATCATTTATTTAATGATTTTGTGTGGAGACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392256" ref_strand="+" ref_description="SGN-E392256 [TUS-36-M16](-)">
      <seq>gcaaacttaaaatttgtcaacggctacagcatatacaacataaaagaacaagagttatttacgatggtctcctttatcatgatttttttctttctttgaaaatgtctatgaagattagaaagccacaactcaaacccagatctcaagacgtatgaacgaacaacttattcttaatgtctcaatttagtttctccttcacatggacgattaagaagcaccaacgatgatgtgctgataggaatgaagatccatttgacaaaaagtcctacaaatttcatcacaatgaaatcgattgcagtatgagtggcaactttattgaattctttgcgatctggcttgtggcacggcaccttttaacaagcctaacgttgtatttggcaaaacctctaaggggatcgaaaacagaatcgaatttttttttagtttgctttttgctattgtcgtttttgtttagagttaggcagtgacccatattttctttatttctttattatttgttgaaagttttatttgttgttttctcattataattttacatatcatttatttaatgattttgtgtggaaacttgtttcaataaatttagattattttatcttttgttcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4441" stop="5648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4741" g_stop="5358" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E392256" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4741" e_stop="5358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCTATTCATATGAT</genome_strand>
        <mrna_strand>GCAAACTTAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTACGATGGTCTCCTTTATCATGATTTTTTTCTTTCTTTGAAAATGTCTATGAAGATTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACTTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTTTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392257" ref_strand="+" ref_description="SGN-E392257 [TUS-36-M16]">
      <seq>gcaaactcaaaatttgtcaacggctacagcatatacaacataaaagaacaagagttatttttgatggtctcctttatccttatttttttctttctttgaaaatgactatgaagcttagaaagccacaactcaaacccagatctcaagacgtatgaacgaacaacctattcttaatgtctcaatttagtttctccttcacatggacgattaagaagcaccaacgatgatgtgctgataggaatgaagatccatttgacaaaaagtcctacaaatttcatcacaatgaaatcgattgcagtatgagtggcaactttattgaattctttgcgatctggcttgtggcacggcacctcttaacaagcctaacgttgtatttggcaaaacctctaaggggatcgaaaacagaatcgaatttttttttagtttgctttttgctattgtcgtttttgtttagagttaggcagtgacccatattttctttatttctttattatttgttgaaagttttatttgttgttttctcattataattttacatatcatttatttaatgattttgtgtggaaacttgtttcaataaatttagattattttatcttttgttcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4441" stop="5648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4741" g_stop="5347" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="619"/>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E392257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4741" e_stop="5347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCT</genome_strand>
        <mrna_strand>GCAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236393" ref_strand="+" ref_description="SGN-E236393 [cLED-13-I20]">
      <seq>caaactcaaaatttgtcaacggctacagcatatacaacataaaagaacaagagttatttttgatggtctcctttatccttatttttttctttctttgaaaatgactatgaagcttagaaagccacaactcaaacccagatctcaagacgtatgaacgaacaacctattcttaatgtctcaatttagtttctccttcacatggacgattaagaagcaccaacgatgatgtgctgataggaatgaagatccatttgacaaaaagtcctacaaatttcatcacaatgaaatcgattgcagtatgagtggcaactttattgaattctttgcgatctggcttgtggcacggcacctcttaacaagcctaacgttgtatttggcaaaacctctaaggggatcgaaaacagaatcgaatttttttttagtttgctttttgctattgtcgtttttgtttagagttaggcagtgacccatattttctttatttctttattatttgttgaaagttttatttgttgttttctcattataattttacatatcatttatttaatgattttgtgtggaaacttgtttcaataaatttagattattttatcttttgttcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4442" stop="5648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4742" g_stop="5358" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E236393" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4742" e_stop="5358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCTATTCATATGAT</genome_strand>
        <mrna_strand>CAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375117" ref_strand="+" ref_description="SGN-E375117 [TUS-36-M15](-)">
      <seq>caaactcaaaatttgtcaacggctacagcatatacaacataaaagaacaagagttatttttgatggtctcctttatccttatttttttctttctttgaaaatgactatgaagcttagaaagccacaactcaaacccagatctcaagacgtatgaacgaacaacctattcttaatgtctcaatttagtttctccttcacatggacgattaagaagcaccaacgatgatgtgctgataggaatgaagatccatttgacaaaaagtcctacaaatttcatcacaatgaaatcgattgcagtatgagtggcaactttattgaattctttgcgatctggcttgtggcacggcacctcttaacaagcctaacgttgtatttggcaaaacctctaaggggatcgaaaacagaatcgaatttttttttagtttgctttttgctattgtcgtttttgtttagagttaggcagtgacccatattttctttatttctttattatttgttgaaagttttatttgttgttttctcattataattttacatatcatttatttaatgattttgtgtggaaacttgtttcaataaatttagattattttatcttttgttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4442" stop="5648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4742" g_stop="5357" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E375117" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4742" e_stop="5357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCTATTCATATGA</genome_strand>
        <mrna_strand>CAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233568" ref_strand="+" ref_description="SGN-E233568 [cLED-9-J23]">
      <seq>caaactcaaaatttgtcaacggctacagcatatacaacataaaagaacaagagttatttttgatggtctcctttatccttatttttttctttctttgaaaatgactatgaagcttagaaagccacaactcaaacccagatctcaagacgtatgaacgaacaacctattcttaatgtctcaatttagtttctccttcacatggacgattaagaagcaccaacgatgatgtgctgataggaatgaagatccatttgacaaaaagtcctacaaatttcatcacaatgaaatcgattgcagtatgagtggcaactttattgaattctttgcgatctggcttgtggcacggcaccttttaacaagcctaacgttgtatttggcaaaacctctaaggggatcgaaaacagaatcgaatttttttttagtttgctttttgctatagtcgtttttggttagagtttggcagtgacccatatttactttatttctttattatttgttgaaagttttatttgttggtttctcattataattttacatatcatttatttaatgattttgtgtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4442" stop="5608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4742" g_stop="5308" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E233568" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4742" e_stop="5308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAAC</genome_strand>
        <mrna_strand>CAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTTTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATAGTCGTTTTTGGTTAGAGTTTGGCAGTGACCCATATTTACTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGGTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325204" ref_strand="+" ref_description="SGN-E325204 [cTOC-1-C17]">
      <seq>acgatttttatccccatgaaaaaaaacttaaagtttccttcttcaattggtggatgtttagtacatttggtggtgctttacttgccacaattggacttgtttacattcaagaaaacatgagttggggattaagttatggaattccaactgttggattaatattttcactaatcattttctatattgggacaccaacttacatgcataaagttataaagtctcaacatcctgctaaggatctatttcgtgttcctattgttgcatttgccaacaggaaaatggaactacctaatgactcttcacaacttcatgaacttgatatgcaatattatttcactacggggaaacgacaagtccatcacactccagtatttaagttcttggacaaagcagcaatgaaacatgacaatgatacaggttcaaggctaccatgtacagtgactcaagtggaaggagcaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18213" stop="16029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17913" g_stop="17538" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17537" i_stop="16415" i_length="1123">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16414" g_stop="16329" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="462" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E325204" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17913" e_stop="17538"/>
          <exon e_start="16414" e_stop="16329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATTTTAATCCCCATGAAAAAAAACTTAAAGTTTCCTTCTTCAATTGGTGGATGTTTAGTACATTTGGTGGTGCTTTACTTGCCACAATTGGACTTGTTTACATTCAAGAAAACATGAGTTGGGGATTAGGTTATGGAATTCCAACTGTTGGATTAATATTTTCACTAATCATTTTCTATATTGGGACACCAACTTACAGGCATAAAGTTAGAAAGTCTCAACATCCTGCTAAGGATCTATTTCGTGTTCCTATTGTTGCATTTGCCAACAGGAAAATGGAACTACCTAATGACTCTTCACAACTTCATGAACTTGATATGCAATATTATTTCACTACGGGGAAACGACAAGTCCATCACACTCCAGTATTTAGGTAAGTTTTTATCGGAAGATATCGCCTTTAATAAGGTTACTATGTTTTTACATGATCTATAGCATTTGAGTATTTGTTTTTATGCTGTGTAATACTCTCTCCTGTCCACTTCTATTTGTCATCGTTTTCTTTATTTAGAGTCAAATCATAAAAATTTTGATTAATATTTTTTTATCATATTGATATGCAAAAGAATTGCAATTTATAATTCTTTGAATAATTTTTGAATAGTTAAATTTAATTAATCAAATTAACATTAAAAAAGCACAACATAACAAATAAAAGTGAACAAAGTATTATTTACACTGCTCTACTGTTGGTTCTTTAAGCATGGTTGCTTTCCTTTTTGTCAAGTTGCATAAGAACAGCAGCTATCACTAGTTTCAACGTGGCAACCTGTTAATTGTCAATTTCAATTTTAATTTATCTGTCTACCTTTCACTTTTTGTCAGTTTTAAAAAGAATATGTTATCATTTTATTCCGTAACTCTTTAATTTTCACTTTTTCACATAAATATATTTAAAATTAAAAGATACTCATTTTAGTTCATTTTGCATATATTTAGATTAAGATCATAATATTTTGCCTTTTTTATTTTGTTAAGAAACAAGTCAAAATCAGACAAACAAATTAAAATAGATGACACATATAATTACTCTGATAGCTTAAGGATAAATGAGGGACCTAAGACACAACCAACCATAAAATTCGCTGTTACTATAGTTACAATCAAATTGGACTTGGAATCTATCCAACTGATCGATCCACATCATCATTAGCCTAATCCTATGAGTTGCCTTTACCACAGGCAAGGCACAAAATCCCCATAATTAGCTGCCTTAATATGACATAGATTGATTAATATATTACTAGCATATACTTAATGACAAATTAAACCAAAGTCCCAAATCATGGCAAAGAGTCAAATAAATGAGCACCATATATAATTGAGCATTTATCTGATAATGATGAAGTGTGTGACTATCTCAAAATCTCTTTCTATTATGATAATGTGTATGATTATCTTATCTAAAAGCTTAAATATTAGAGAAAACATAATTTTATTATTTAATTGTATACTCAACAATATCAAATAAGCCAAAATAACTCTGTTTTATTCAGGTTCTTGGACAAAGCAGCAATGAAACATGACAATGATACAGGTTCAAGGCTACCATGTACAGTGACTCAAGTGGAAGGAGCAAAGT</genome_strand>
        <mrna_strand>ACGATTTTTATCCCCATGAAAAAAAACTTAAAGTTTCCTTCTTCAATTGGTGGATGTTTAGTACATTTGGTGGTGCTTTACTTGCCACAATTGGACTTGTTTACATTCAAGAAAACATGAGTTGGGGATTAAGTTATGGAATTCCAACTGTTGGATTAATATTTTCACTAATCATTTTCTATATTGGGACACCAACTTACATGCATAAAGTTATAAAGTCTCAACATCCTGCTAAGGATCTATTTCGTGTTCCTATTGTTGCATTTGCCAACAGGAAAATGGAACTACCTAATGACTCTTCACAACTTCATGAACTTGATATGCAATATTATTTCACTACGGGGAAACGACAAGTCCATCACACTCCAGTATTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGGACAAAGCAGCAATGAAACATGACAATGATACAGGTTCAAGGCTACCATGTACAGTGACTCAAGTGGAAGGAGCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689303" ref_strand="+" ref_description="SGN-E689303 [t3_tus_80_P20]">
      <seq>ttttcaacgtggcaacctgttaattgtcaatttcaattttaatttatctgtctacctttcactttttgtcagtttcaaaaagaatatgttatcattttattccgtaactctttaattttcactttttcacataaatatatttaaaattaaaagatactcattttagttcattttgcatatatntagattaagatcataatattttgccttttttattttgttaagaaacaagtcaaaatcagacaaacaaattaaaatagatgacacatatnattactctgatagcttaaggataaatgagggacctaagacacaaccaaccataaaattcgctgttactatagttacaatcaaattggacttggaatctatccaactgatcgatccacatcatcattagcctaatcctatgagttgcctttaccacaggcaaggcacaaaatccccataattagctgccttaatatgacatagattgattaatatattactagcatatacttaatgacaaattaaaccaaagtcccaaatcatggcaaagagtcaaataaatgagcaccatatataattgagcatttatctgataatgatgaagtgtgtgactatctcaaaatctctttctattatgataatgtgtatgattatcttatctaaaagcttaaatattagagaaaacataattttattatttaattgtatactcaacaatatcaaataagccaaaataactctgttttattcaggttcttggacaaagcagcaatgaaacatgacaatgatacaggttcagggctaccatgtacagggactcaagtggaaggagcaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17456" stop="16029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17157" g_stop="16329" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E689303" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17157" e_stop="16329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAACGTGGCAACCTGTTAATTGTCAATTTCAATTTTAATTTATCTGTCTACCTTTCACTTTTTGTCAGTTTTAAAAAGAATATGTTATCATTTTATTCCGTAACTCTTTAATTTTCACTTTTTCACATAAATATATTTAAAATTAAAAGATACTCATTTTAGTTCATTTTGCATATATTTAGATTAAGATCATAATATTTTGCCTTTTTTATTTTGTTAAGAAACAAGTCAAAATCAGACAAACAAATTAAAATAGATGACACATATAATTACTCTGATAGCTTAAGGATAAATGAGGGACCTAAGACACAACCAACCATAAAATTCGCTGTTACTATAGTTACAATCAAATTGGACTTGGAATCTATCCAACTGATCGATCCACATCATCATTAGCCTAATCCTATGAGTTGCCTTTACCACAGGCAAGGCACAAAATCCCCATAATTAGCTGCCTTAATATGACATAGATTGATTAATATATTACTAGCATATACTTAATGACAAATTAAACCAAAGTCCCAAATCATGGCAAAGAGTCAAATAAATGAGCACCATATATAATTGAGCATTTATCTGATAATGATGAAGTGTGTGACTATCTCAAAATCTCTTTCTATTATGATAATGTGTATGATTATCTTATCTAAAAGCTTAAATATTAGAGAAAACATAATTTTATTATTTAATTGTATACTCAACAATATCAAATAAGCCAAAATAACTCTGTTTTATTCAGGTTCTTGGACAAAGCAGCAATGAAACATGACAATGATACAGGTTCAAGGCTACCATGTACAGTGACTCAAGTGGAAGGAGCAAAGT</genome_strand>
        <mrna_strand>TTTTCAACGTGGCAACCTGTTAATTGTCAATTTCAATTTTAATTTATCTGTCTACCTTTCACTTTTTGTCAGTTTCAAAAAGAATATGTTATCATTTTATTCCGTAACTCTTTAATTTTCACTTTTTCACATAAATATATTTAAAATTAAAAGATACTCATTTTAGTTCATTTTGCATATATNTAGATTAAGATCATAATATTTTGCCTTTTTTATTTTGTTAAGAAACAAGTCAAAATCAGACAAACAAATTAAAATAGATGACACATATNATTACTCTGATAGCTTAAGGATAAATGAGGGACCTAAGACACAACCAACCATAAAATTCGCTGTTACTATAGTTACAATCAAATTGGACTTGGAATCTATCCAACTGATCGATCCACATCATCATTAGCCTAATCCTATGAGTTGCCTTTACCACAGGCAAGGCACAAAATCCCCATAATTAGCTGCCTTAATATGACATAGATTGATTAATATATTACTAGCATATACTTAATGACAAATTAAACCAAAGTCCCAAATCATGGCAAAGAGTCAAATAAATGAGCACCATATATAATTGAGCATTTATCTGATAATGATGAAGTGTGTGACTATCTCAAAATCTCTTTCTATTATGATAATGTGTATGATTATCTTATCTAAAAGCTTAAATATTAGAGAAAACATAATTTTATTATTTAATTGTATACTCAACAATATCAAATAAGCCAAAATAACTCTGTTTTATTCAGGTTCTTGGACAAAGCAGCAATGAAACATGACAATGATACAGGTTCAGGGCTACCATGTACAGGGACTCAAGTGGAAGGAGCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326059" ref_strand="+" ref_description="SGN-E326059 [cTOC-16-K13]">
      <seq>tttcaacgtggcaacctgttaattgtcaatttcaattttaatttatctgtctacctttcactttttgtcagtttcaaaaagaatatgttatcattttattccgtaactctttaattttcactttttcacataaatatatttaaaattaaaagatactcattttagttcattttgcatatatttagattaagatcataatattttgccttttttattttgttaagaaacaagtcaaaatcagacaaacaaattaaaatagatgacacatataattactctgatagcttaaggataaatgagggacctaagacacaaccaaccataaaattcgctgttactatagttacaatcaaattggacttggaatctatccaactgatcgatccacatcatcattagcctaatcctatgagttgcctttaccacaggcaaggcacaaaatccccataattagctgccttaatatgacatagattgattaatatattactagcatatacttaatgacaaattaaaccaaagtcccaaatcatggcaaagagtcaaataaatgagcaccatatataattgagcatttatctgataatgatgaagtgtgtgactatctcaaaatctctttctattatgataatgtgtatgattatcttatctaaaagcttaaatattagagaaaacataattttattatttaattgtatactcaacaatatcaaataagccaaaataactctggntttattcaggttcttgggacaaagcagcaatgaaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17456" stop="16085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17156" g_stop="16385" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E326059" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17156" e_stop="16385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACGTGGCAACCTGTTAATTGTCAATTTCAATTTTAATTTATCTGTCTACCTTTCACTTTTTGTCAGTTTTAAAAAGAATATGTTATCATTTTATTCCGTAACTCTTTAATTTTCACTTTTTCACATAAATATATTTAAAATTAAAAGATACTCATTTTAGTTCATTTTGCATATATTTAGATTAAGATCATAATATTTTGCCTTTTTTATTTTGTTAAGAAACAAGTCAAAATCAGACAAACAAATTAAAATAGATGACACATATAATTACTCTGATAGCTTAAGGATAAATGAGGGACCTAAGACACAACCAACCATAAAATTCGCTGTTACTATAGTTACAATCAAATTGGACTTGGAATCTATCCAACTGATCGATCCACATCATCATTAGCCTAATCCTATGAGTTGCCTTTACCACAGGCAAGGCACAAAATCCCCATAATTAGCTGCCTTAATATGACATAGATTGATTAATATATTACTAGCATATACTTAATGACAAATTAAACCAAAGTCCCAAATCATGGCAAAGAGTCAAATAAATGAGCACCATATATAATTGAGCATTTATCTGATAATGATGAAGTGTGTGACTATCTCAAAATCTCTTTCTATTATGATAATGTGTATGATTATCTTATCTAAAAGCTTAAATATTAGAGAAAACATAATTTTATTATTTAATTGTATACTCAACAATATCAAATAAGCCAAAATAACTCT-GTTTTATTCAGGTTCTT-GGACAAAGCAGCAATGAAACATGA</genome_strand>
        <mrna_strand>TTTCAACGTGGCAACCTGTTAATTGTCAATTTCAATTTTAATTTATCTGTCTACCTTTCACTTTTTGTCAGTTTCAAAAAGAATATGTTATCATTTTATTCCGTAACTCTTTAATTTTCACTTTTTCACATAAATATATTTAAAATTAAAAGATACTCATTTTAGTTCATTTTGCATATATTTAGATTAAGATCATAATATTTTGCCTTTTTTATTTTGTTAAGAAACAAGTCAAAATCAGACAAACAAATTAAAATAGATGACACATATAATTACTCTGATAGCTTAAGGATAAATGAGGGACCTAAGACACAACCAACCATAAAATTCGCTGTTACTATAGTTACAATCAAATTGGACTTGGAATCTATCCAACTGATCGATCCACATCATCATTAGCCTAATCCTATGAGTTGCCTTTACCACAGGCAAGGCACAAAATCCCCATAATTAGCTGCCTTAATATGACATAGATTGATTAATATATTACTAGCATATACTTAATGACAAATTAAACCAAAGTCCCAAATCATGGCAAAGAGTCAAATAAATGAGCACCATATATAATTGAGCATTTATCTGATAATGATGAAGTGTGTGACTATCTCAAAATCTCTTTCTATTATGATAATGTGTATGATTATCTTATCTAAAAGCTTAAATATTAGAGAAAACATAATTTTATTATTTAATTGTATACTCAACAATATCAAATAAGCCAAAATAACTCTGGNTTTATTCAGGTTCTTGGGACAAAGCAGCAATGAAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326248" ref_strand="+" ref_description="SGN-E326248 [cTOC-16-P2]">
      <seq>tttcaacgtggcaacctgttaattgtcaatttcaattttaatttatctgtctacctttcactttttgtcagtttcaaaaagaatatgttatcattttattccgtaactctttaattttcactttttcacataaatatatttaaaattaaaagatactcattttagttcattttgcatatatttagattaagatcataatattttgccttttttattttgttaagaaacaagtcaaaatcagacaaacaaattaaaatagatgacacatataattactctgatagcttaaggataaatgagggacctaagacacaaccaaccataaaattcgctgttactatagttacaatcaaattggacttggaatctatccaactgatcgatccacatcatcattagcctaatcctatgagttgcctttaccacaggcaaggcacaaaatccccataattagctgccttaatatgacatagattgattaatatattactagcatatacttaatgacaaattaaaccaaagtcccaaatcatggcaaagagtcaaataaatgagcaccatatataattgagcatttatctgataatgatgaagtgtgtgactatctcaaaatctctttctattatgataatgtgtatgattatcttatctaaaagcttaaatattagagaaaacataattttatttatttattgtatactcaacaatatcaaataagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17456" stop="16138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17156" g_stop="16438" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E326248" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17156" e_stop="16438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACGTGGCAACCTGTTAATTGTCAATTTCAATTTTAATTTATCTGTCTACCTTTCACTTTTTGTCAGTTTTAAAAAGAATATGTTATCATTTTATTCCGTAACTCTTTAATTTTCACTTTTTCACATAAATATATTTAAAATTAAAAGATACTCATTTTAGTTCATTTTGCATATATTTAGATTAAGATCATAATATTTTGCCTTTTTTATTTTGTTAAGAAACAAGTCAAAATCAGACAAACAAATTAAAATAGATGACACATATAATTACTCTGATAGCTTAAGGATAAATGAGGGACCTAAGACACAACCAACCATAAAATTCGCTGTTACTATAGTTACAATCAAATTGGACTTGGAATCTATCCAACTGATCGATCCACATCATCATTAGCCTAATCCTATGAGTTGCCTTTACCACAGGCAAGGCACAAAATCCCCATAATTAGCTGCCTTAATATGACATAGATTGATTAATATATTACTAGCATATACTTAATGACAAATTAAACCAAAGTCCCAAATCATGGCAAAGAGTCAAATAAATGAGCACCATATATAATTGAGCATTTATCTGATAATGATGAAGTGTGTGACTATCTCAAAATCTCTTTCTATTATGATAATGTGTATGATTATCTTATCTAAAAGCTTAAATATTAGAGAAAACATAATTTTATTATTTAATTGTATACTCAACAATATCAAATAAGC</genome_strand>
        <mrna_strand>TTTCAACGTGGCAACCTGTTAATTGTCAATTTCAATTTTAATTTATCTGTCTACCTTTCACTTTTTGTCAGTTTCAAAAAGAATATGTTATCATTTTATTCCGTAACTCTTTAATTTTCACTTTTTCACATAAATATATTTAAAATTAAAAGATACTCATTTTAGTTCATTTTGCATATATTTAGATTAAGATCATAATATTTTGCCTTTTTTATTTTGTTAAGAAACAAGTCAAAATCAGACAAACAAATTAAAATAGATGACACATATAATTACTCTGATAGCTTAAGGATAAATGAGGGACCTAAGACACAACCAACCATAAAATTCGCTGTTACTATAGTTACAATCAAATTGGACTTGGAATCTATCCAACTGATCGATCCACATCATCATTAGCCTAATCCTATGAGTTGCCTTTACCACAGGCAAGGCACAAAATCCCCATAATTAGCTGCCTTAATATGACATAGATTGATTAATATATTACTAGCATATACTTAATGACAAATTAAACCAAAGTCCCAAATCATGGCAAAGAGTCAAATAAATGAGCACCATATATAATTGAGCATTTATCTGATAATGATGAAGTGTGTGACTATCTCAAAATCTCTTTCTATTATGATAATGTGTATGATTATCTTATCTAAAAGCTTAAATATTAGAGAAAACATAATTTTATTTATTTATTGTATACTCAACAATATCAAATAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27958" stop="26912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27658" g_stop="27212" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27658" e_stop="27212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATCGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATCTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACA-AAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAACGGAGAGTGGTGAGCGAGATTTTTGGGAGAGAGATG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTGGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27959" stop="27064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27659" g_stop="27338" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27659" e_stop="27338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATCGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATCTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACA-AAATTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27959" stop="27064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27659" g_stop="27354" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27659" e_stop="27354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATCGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATCTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACAAAATTATACACTTTTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315957" ref_strand="+" ref_description="SGN-E315957 [cTOA-26-D12]">
      <seq>ccagccgcccctctttctctccttcactgttgccgtctcaggcaagacgccgccggagaaccctaaaacctacccatcattcttcaatctctcttcctctccagccagcatgaggaggacgaagccagctgcagagaagaaaccagcagcgacaaggcaacccccggcctgcgtactgcagcgaagccagcaaccaaacgactccaacaaaaccccaaaccccatttctttcttctccgaccacaccacccccaaaactcttttgtttctttctcgtttttgcagctagcagcgaccccggcggggagctttaagctccgatgaaccggagccaaataagaaaaaaatataaatatnaaaatgaaacagtccctttccctctctccccttcacgattttgatttattttggtaggtattccggccagctcgagcaaactcggtgagcttcgaagctgtggcaaacaaatcaaaaccctctatcaaaatggagctanggaagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45823" stop="46925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46123" g_stop="46625" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E315957" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46123" e_stop="46625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCCGCCCCTCTTTCTCTCCTTCACTGTTGCCGTCTCAGGCAAGACGCCGCCGGAGAACCCTAAAACCTACCCATCATTCTTCAATCTCTCTTCCTCTCCAGCCAGCATGAGGAGGACGAAGCCAGCTGCAGAGAAGAAACCAGCAGCGACAAGGCAACCCCCGGCCTGCGTACTGCAGCGAAGCCAGCAACCAAACGACTCCAACAAAACCCCAAACCCCATTTCTTTCTTCTCCGACCACACCACCCCCAAAACTCTTTTGTTTCTTTCTCGTTTTTGCAGCTAGCAGCAACCCCGGCGGGGAGCTTTAAGCTCCGATGAACCGGAGCCAAATAAGAAAAAAATATAAATATAAAAATGAAACAGTCCCTTTCCCTCTCTCCCCTTCACGATTTTGATTTATTTT-GTAGGTATTCCGGCCAGCTCGAGCAACCTCGGTGAGCTTCGAAGCTGTGGCAAACAAATCAAAACCCTCTATCAAAATGGAGCTAAGGAAGCCA</genome_strand>
        <mrna_strand>CCAGCCGCCCCTCTTTCTCTCCTTCACTGTTGCCGTCTCAGGCAAGACGCCGCCGGAGAACCCTAAAACCTACCCATCATTCTTCAATCTCTCTTCCTCTCCAGCCAGCATGAGGAGGACGAAGCCAGCTGCAGAGAAGAAACCAGCAGCGACAAGGCAACCCCCGGCCTGCGTACTGCAGCGAAGCCAGCAACCAAACGACTCCAACAAAACCCCAAACCCCATTTCTTTCTTCTCCGACCACACCACCCCCAAAACTCTTTTGTTTCTTTCTCGTTTTTGCAGCTAGCAGCGACCCCGGCGGGGAGCTTTAAGCTCCGATGAACCGGAGCCAAATAAGAAAAAAATATAAATATNAAAATGAAACAGTCCCTTTCCCTCTCTCCCCTTCACGATTTTGATTTATTTTGGTAGGTATTCCGGCCAGCTCGAGCAAACTCGGTGAGCTTCGAAGCTGTGGCAAACAAATCAAAACCCTCTATCAAAATGGAGCTANGGAAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315802" ref_strand="+" ref_description="SGN-E315802 [cTOA-26-D20]">
      <seq>ccagccgcccctctttctctccttcactgttgccgtctcaggcaagacgccgccggagaaccctaaaacctacccatcattcttcaatctctcttcctctccagccagcatgaggaggacgaagccagctgcagagaagaaaccagcagcgacaaggcaacccccggcctgcgtactgcagcgaagccagcaaccaaacgactccaacaaaaccccaaaccccatttctttcttctccgaccacaccacccccaaaactcttttgtttctttctcgtttttgcagctagcagcgaccccggcggggagctttaagctccgatgaaccggagcccaataagaaaaaaatataaatataaaaatggaacggtccctttccctctctccccttcacgattttgatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45823" stop="46831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46123" g_stop="46531" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E315802" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46123" e_stop="46531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCCGCCCCTCTTTCTCTCCTTCACTGTTGCCGTCTCAGGCAAGACGCCGCCGGAGAACCCTAAAACCTACCCATCATTCTTCAATCTCTCTTCCTCTCCAGCCAGCATGAGGAGGACGAAGCCAGCTGCAGAGAAGAAACCAGCAGCGACAAGGCAACCCCCGGCCTGCGTACTGCAGCGAAGCCAGCAACCAAACGACTCCAACAAAACCCCAAACCCCATTTCTTTCTTCTCCGACCACACCACCCCCAAAACTCTTTTGTTTCTTTCTCGTTTTTGCAGCTAGCAGCAACCCCGGCGGGGAGCTTTAAGCTCCGATGAACCGGAGCCAAATAAGAAAAAAATATAAATATAAAAATGAAACAGTCCCTTTCCCTCTCTCCCCTTCACGATTTTGATTTATTTT</genome_strand>
        <mrna_strand>CCAGCCGCCCCTCTTTCTCTCCTTCACTGTTGCCGTCTCAGGCAAGACGCCGCCGGAGAACCCTAAAACCTACCCATCATTCTTCAATCTCTCTTCCTCTCCAGCCAGCATGAGGAGGACGAAGCCAGCTGCAGAGAAGAAACCAGCAGCGACAAGGCAACCCCCGGCCTGCGTACTGCAGCGAAGCCAGCAACCAAACGACTCCAACAAAACCCCAAACCCCATTTCTTTCTTCTCCGACCACACCACCCCCAAAACTCTTTTGTTTCTTTCTCGTTTTTGCAGCTAGCAGCGACCCCGGCGGGGAGCTTTAAGCTCCGATGAACCGGAGCCCAATAAGAAAAAAATATAAATATAAAAATGGAACGGTCCCTTTCCCTCTCTCCCCTTCACGATTTTGATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63814" stop="64620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64114" g_stop="64320" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64114" e_stop="64320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAG-AAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCATATTGAGTGTTGTATTCGTGACTACACAATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284128" ref_strand="+" ref_description="SGN-E284128 [cLER-13-D2]">
      <seq>gattttggaaccttgagtatgggtaaaaagactgtttctagggtggttggtattggtacaatttgtttggaaactagtattggaactaaactagttttgaacaatgtgaaacatgctcttgatgttcgtctgcacctaatttctgttggtgttttagatgatgaaggatatgttagtaccaacggtgatggaaaatggaagctcattaagggttccttggttgtggctcgtggtaacaaacgtcgtggtcaatactggactacggcctctgcttgttgatatggtgaatgcggttgaaagcgatagctcttcaacattatggctcctcgttggccngtggtttttttccttattcagaagggcttccacgtaaaattattggtgtcgttattttctcattttatttccattacatttaccatatatacttttatgcttgtccgtgttttcccaataggaatgacttgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65205" stop="69465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65505" g_stop="65827" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65828" i_stop="69030" i_length="3203">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69031" g_stop="69180" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="472" r_length="151" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E284128" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65505" e_stop="65827"/>
          <exon e_start="69031" e_stop="69180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGTTGGTTGATATTGGTACAATTTGTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCTATACTGGACTATGACCTCTACTTGTGTTGATATGGTAAATGTTGTTGAGAGCGATGGCTCTTCAACATTATGGCACAAGAGGCTTAGCCACATTAGCGAGAAAGGACTTAATGTTCTAACCAAGAAGAAATTATTGTCAAATTTCCAAAGTGCTAAAATAGAAAAATGTGAGCACTGCTTGGCTGGTAAACAAAATAGAGTTTCCTTTAAGTCCTACCCTCCTTCGAGGAAGACAGAGTTGCTTGAGTTAGTGCACTCTGATTTATGTGGTCCAATGAAGACAAAGACATTGGGTGGTGCACTTTACTTTGTCACTTTCATTGATGATTGCTCGAGAAAACTTTGGGTCTATGTCTTGAAGACTAAAGACCAAGTGCTAAGTGTCTTTAAGCAGTTTCAGGCTTCAATTGAAAGAGAAAATGGAAAGAAAGTGAAATGTATTCGTACTGATAATGGTGGTGAATATTGTGGACCATTTGATGAATACTGCAAGCATCAAGGTATTAGACACCAGAAGACTCCTCCCAAGACTCCTCAGCTTAATGGTTTGGCTGAGAGGATGAACAGGACCTTGATGGAAAGAGTTAGATGTTTGCTTTCTGAAGCAAAGTTGCCGAACTCATTTTGGGGTGAGGCTTTATTGACCGCTGTACATGTTATTAATCCATCTCCTGTTGTTGCTTTGCAAAGTGATGTACCAAATTGTGTTTGGCATGGAAATGATGTTTCCTATGACCATTTGAGAGTATTTGGTTGCAAAGCTTTTGTACATGTGCCGAAAGATGAAAGGTCAAAATTAGATGCCAAGACAAGGCAATGCATCTTCATTGGATATGGCCTAGATGAATTTGGTTACAGGCTATATGATCCAATTGAAAAGAAACTTGTGAGAAGCCGTGATATTATTTTCATGGAGAATCAAACAATTGAAGATATTGACAAAATAGAGTAGGTAGAATCTTCAAGTTTTGATGGTATAGTTCATCATGATGAAGTTCCTCACACAAGTGTGCATGATGTTGTTGGGTTTGATAATCATGGTGATGCCCAAAATCATGTATTGAATCAACATGTTGATGTTGATAATAACAATGATATTGTTATTGATAATCCTGTTGCTCATGAAGTTGTGGACGAATCAAATATTCCGCTTCGGAGGTCCACAAGACAGCGGTTTCCTTCCTCCCGTTATTCACCCAATGAGTATGTGTTACTCACTGACGGGGGAGAGCCTGAATGTTATGAGGAGGCCATGGAAGATGAGCACAAGAATCAATGGATTGAAGACATGCAAGACGAGATGAAGTCTTTGCATGAGAACCACACTTATGAGTTGGTAAAATTACCCAAGGGCATGAGAGCTTTGAAGAACAAGTGGGTGTTCAAAGTTAAAGTTAAAGAACACAACTTGAATCCCAGGTACAAAGCTAGATTGGTTGTTAAGGGATTCGGTCAAAGGAAAGATATTGACTTTGACGAAATATATTCTCATGTTGTGAAAATGTCCTCGATTCGCACAGTTCTAGGTTTGGCTGCTAGTCTTAATTTAGAGATTGAGCAGATGGATGTGAAGACGGATTTCCTTCACGGTGACCTAGAAGAAGGGATTTATATGGAACAACCTAAGGCTTCAAAGTAGATGGTAAAGAAAATTTTGTATGCAAACTCAAAAAGAGTCTCTATGGCCTAAAACAAGCTCCTAGACAGTGGTACAAAAAGTTTGAATATGTTATGGGGGAGCAAGGCTATAAGAAGACTTCTTCAGATCATTGCGTATTTGCACCAAAATTTTCTGACAATGATTTTATCATCCTTTTGTTGTATGTGGATGATATGTTGATTGTGGGCAAAAATACTTCCAAGATTGACGAGCTAAAGAAAGAGTTGTGTAAGTCTTTTTCAATGAAAGACTTGGGTCATGCCAAGCAAATTTTGGGCATGAGAATTACTCGTCTTAGAGATAAAAAGAAGATTTATTTGTCTCAGAAGAAGTACATTGAACGCGTATTGGAGAGCTTCAATATGAAGAATGTGAAGCCTGTGAGTATACCTCTTGCTGGTCATATGAAGTTGAGCAAGAAGATGTGTCCTACAACTAGGGAGGAAAAAGAGAACATGGCCAATGTTCCATATTCCTCCGTCATCGGAAGTCTAATGTATGCAATGGTGTGCACTAGACCTGATATTGCTCACACAGTTGGTGTTGTCAGTAGATTTCTCGAAAATTCGGGAAAAGATTATTGGGAAGCTGTGAAATGGATACTCAGGTATCTTAGAGGAAGCTCAAATGAATGCTTGTGTTTTGGAGCATAAAATCCAATCTTGAAAGGCTATACAGATTCTTATATGACAGGTGACCTTGATAACAGAAAATCCACTACTGGATATTTGTTTACTTTTTCAGGGGGAGCTATATCATGGCAGTCAAAGTTGCAGAAGTGTGTTGCACTATCTACAACTGAAGCTGAGTATATTGCGGCTGCTGAAGCCTGGAAGGAGATGATATGGCTAAAGCGATTTCTTCAAGAGCTTGATTTGAATCAGATGGAGTATATTGTCTATTGTGACAGTCAGAGTGCAATAGACTTGAGTAAGAACTCCATGTACCATGCAAGAACAAAATACATTGACGTCAGATATCATTGGATTCGTGAGAAAGTGGAGAATGAATCTTTTCACGTCAAAAAGATTCACACAAGTGAAAATCCTGCAGATATGCTGACCAAGATGATACCAAAAGACAAGTTCGAGTTATGCAAAGAACTTGTGGGTATGATCTCTCTCTAAAGAAGTTGAAGATACATTCTTCCAGTAAATGGGACTGGAGGGGGAGATTTGTTGAATCCATCCCATTGTTTTAGTCAACTTTAGCTATTCAATTGGTACAAGCAATTGTTAAAAATGAATAGTAATTGGAGTTGAAAAGAAAAGATTTGGTAGTTAGCAAATTGGTAAGATTTGCAACCATTTTTGACTTTGCTATATTTACATATGTCATTAGTGACATAAGTATGGTTTTATCCTTCTATAAATAGAGCATTCTTGCTCATTTGTAGAACACACCAAGTTAGAGAGAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAAAATAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTATAGTAGTCACATTGAGTGTTGTATTTGTGACTACACAGTGTAAAATTTCCTTACTATAGTAATATCAGTTGCTCCTC-TTGGCGCATGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTC-CATTTTATTTCCATTATATTTACCATATATACTTTTGTGCTTGTCCGTGTTTTCCCAACAAGTTTTTGATTGGTTTT</genome_strand>
        <mrna_strand>GATTTTGGAACCTTGAGTATGGGTAAAAAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTATTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCTTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCAATACTGGACTACGGCCTCTGC-T-TGTTGATATGGTGAATGCGGTTGAAAGCGATAGCTCTTCAACATTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGTTGGCCNGTGGTTTTTTTCCTTATTCAGAAGGGCTTCCACGTAAAATTATTGGTGTCGTTATTTTCTCATTTTATTTCCATTACATTTACCATATATACTTTTATGCTTGTCCGTGTTTTCCCAA-TAGGAATGACTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543912" ref_strand="+" ref_description="SGN-E543912 [TUS-65-P14]">
      <seq>cgccatcatctctaagtccacttctcttattttaaatcgatcatcgtctcttcttcattgatcatttgagttcagtaatttcttcttcgaatattgatcagaaaaaaattaatcgaagcgcacaaataaatatggattgttctatatgtagcgcgatgccatttattttaaggccaccaagaaatacaatatgtgcagcttgttacgaaggagctagaacaataattacgttgactaccaacaaggttgatcatgttgaaaatacaaaaggaagtgataataaaacaataactggacttctttctgcttcttcatccaatccatctattaagggatttggaaatgcattgaaatgggtgaaagaaatgaaggagatggaagaggaatcaaaggagaagctgaattatcttagtggttttgttgttgccttaagagatcatattcatactgatattttaattaaacctggcaatgatgctccttctataccagcacatagagctcttctggcagcaagatctgacatattcaaaaacatactggactcagatggatgtaaagctccaccaagtaacaacacgataacgttgtctgaactaaactacgatgaattagagtgtctattagagttcctgtacagtggagatttggctaaagagaaggtggaaaaacatgtatattccttgtcaattgcagcagataagtatgagattcccttcttgcagagattttgtgagaaatcaatgttgggatcattgaacacatcgaatgctctcgacgttttagagatatctgatacttgttctaatacgtcgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79497" stop="83427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79797" g_stop="80128" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80129" i_stop="82135" i_length="2007">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82136" g_stop="82312" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="509" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82313" i_stop="82816" i_length="504">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82817" g_stop="83127" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="820" r_length="311" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E543912" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79797" e_stop="80128"/>
          <exon e_start="82136" e_stop="82312"/>
          <exon e_start="82817" e_stop="83127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCATCATCTCTAAGTCCACTTCTCTTATTTTAAATCGATCATCGTCTCTTCTTCATTGATCATTTGAGTTCAGTAATTTCTTCTTCGAATATTGATCAGAAAAAAATTAATCGAAGCGCACAAATAAATATGGATTGTTCTATATGTAGCGCGATGCCATTTATTTTAAGGCCACCAAGAAATACAATATGTGCAGCTTGTTACGAAGGAGCTAGAACAATAATTACGTTGACTACCAACAAGGTTGATCATGTTGAAAATACAAAAGGAAGTGATAATAAAACAATAACTGGACTTCTTTCTGCTTCTTCATCCAATCCATCTATTAAGGTATGTATATATCATCATCTCTTTCTTCAAATTAGCGACAGATAAAATTTCATAGCTAAATGATAAAAATGTCACGTTAATCCCATTTAGCTATGGATTGATGATGGAGTATAGGAAAATTCAATTATCTTATGAGTTTTTTTTATAACATTTTGTTACTTTGAATTGTAGACAAATCTCATATATATATATATATATAACAAAATATGTGAAAGATGTTGCACATATAAAGAAGCTAATATTAATTCCTAAAAAGTATTTTAAGAAAAATGTGGGAATTTAGGACCAAAATGGAAAATATAAATGGTTGCCTCCATTGTTAGATATTTACAAGAAGATTTGGAGAAGGTTAGTTTATTTAGGTTACATTTCGTTTAATTATTTTTTTGTTTACTGATGATTTTGATTATAAATAAGCAAGGAGAACAAAGAGAAATTGGAAATTTAGAGTGCAGCGTGCAAAAACAATTTGCAAGGCAGTAGGTTGAGGCTAAACTTGTGTAGCACAAACCACTTTGTTTTACTAATTACTTTGTTCCAAAATAATGACATGATTAATTAGCAGTTGAAAGAGATGCTGATGTCTAGTTTTGCTCTATTTTTTGAATATTGATATGGATATTGTTTTCTTGATTTTCTTTTGGGGGGTGGGTGGGTTGGGGGAGGCTCAAAATTCACATATGGGGAAATTGCAGATTTATCACTTAAAATTAAAATTAGAATTATTAAAAATATATTCTCTTCGACTTATTTTATGTGACATCATTTCTTTTTTAAATTCTCCAAGAAAAAAATCATCTTACTGATAATTAGAAACAATTTTACTTAAAAATTTTCTTCTCACCCTTGATAAAATGATTTACAACCACACAATTATCAAAAGTTTATTTTAAATCACAAGTTTTAAAAGTTTTTTTTTTAACATAAAAATCGTACTAAGTCCTCTCCATTACTTATTCTCTCCATTTCTCGAGCTACATACTTGGATGAAAGCCATGTGTTATAATTTAAAATTAAAGTTGGAGATTTATTTATAATTTATAATTTATAATTTTTATACTTTTTAAATTATAACACATAGCTTCCATCCGAGGGTGTATTTAGAGAAATGGAGATAATAAGTTATGGAGAGGATATTCATTGTAAAACAAATGGAGTACAAATTGTCTGACTCTCCCATATGTAATCATGATCATTCTTATTGTTAGGATTGACTTTTTAATTCTTATCTTATAAGTCAAAAATCACAACTTAAAATTTTTAATTTATGAATTCAAATTTATTTTATTATGTTTTAGCTTAAGATTAAATATTTAAGAGTATCTTTTTAATTCACGCAAATATTTTAAAAATTGATTAAAAGCTATTTTAACTTTAAAATATTTGAAATAATGGAAAACTTATGGAAGTCCCACTAATTTAGGGGCTAATTATTTTGATATATTCAGTTTGCAATATTACGAATCTTATCAGATTTTTACATGAGATTAAAATTAGGTGTAATTGTTTTAGAGACATTATATTCATATAGATTCATACGTATCCGTATACATTATATCCAAGTGGATTCACATGTATCTAGAAAACACAGCAAATCTCACTTATCTCCCTCCTATCCTGAATACATGCACATACCAATTTATATGTCTAGTGTCATTCACATGTATCTAGTATATATATCTGATATACATGACTATCTCGCTCGTCTCACTCGCCTCTCCCTAATATTGTATATCTAGTAGTAAAAATATATGTATATCTAGATGTATATAGGAAATTCATAATTAATGGTAAGATATGTAATTGTCTAAAAGTATACATAGAAAATTACTATATATAATGTATAAATACATATATGTCTAATAAGCTAGTTGTCCTAGAATAAAAGCAATTAACTTGATGAAAATATAAATGGACGAGCTTTCTACAAAGCTGAAAAGCTATATCTTCATAAGAATTCATTGAAGTGACATAAAAATATTGAATATTTTGTCTAACTGATTCCAGGGATTTGGAAATGCATTGAAATGGGTGAAAGAAATGAAGGAGATGGAAGAGGAATCAAAGGAGAAGCTGAATTATCTTAGTGGTTTTGTTGTTGCCTTAAGAGATCATATTCATACTGATATTTTAATTAAACCTGGCAATGATGCTCCTTCTATACCAGCACATAGAGCTCTTCTGGTAATAAAACACGAGGTTTTGACCAAACTAAGCCATTATATAAAGCAATTCATCAAAATAATGCATTTTTCTAAAATTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGGTATATTTTATTTTTAAAAAATTGACGGTTAGATTGATATACGTTACTCAGAGTAACGTTTCACTCCTAAAGTGTTATTCACAGTAACGTTTTAGGAGTAAAACGTTACTCAAAATAACGTTTCAGGAGTAAAACGTTACTTATAGTAACGTATATCAACCTAACGCTGTTAGTTTTTAAAAAATGAAATAAACCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTATAAAATTTTAGAAAAATGTATTATTTTGATAAATAGCTTTAGATAATGATTCAGTTTGATAAAAAATTCAATAAAACACACCAAACTAGCTATTAACTGACTACATTTCCATTATCTCACTTCTGTTAAACATTTTACTTGTATTTAACAGGCAGCAAGATCTGACATATTCAAAAACATACTGGACTCAGATGGATGTAAAGCTCCACCAAGTAACAACACGATAACGTTGTCTGAACTAAACTACGATGAATTAGAGTGTCTATTAGAGTTCCTGTACAGTGGAGATTTGGCTAAAGAGAAGGTGGAAAAACATGTATATTCCTTGTCAATTGCAGCAGATAAGTATGAGATTCCCTTCTTGCAGAAATTTTGTGAGAATCAAATGTTGGGATCATTGAACACATCGAATGCTCTCGACGTTTTAGAGATATCTGATACTTGTTCTAATACGTCGTTAAA</genome_strand>
        <mrna_strand>CGCCATCATCTCTAAGTCCACTTCTCTTATTTTAAATCGATCATCGTCTCTTCTTCATTGATCATTTGAGTTCAGTAATTTCTTCTTCGAATATTGATCAGAAAAAAATTAATCGAAGCGCACAAATAAATATGGATTGTTCTATATGTAGCGCGATGCCATTTATTTTAAGGCCACCAAGAAATACAATATGTGCAGCTTGTTACGAAGGAGCTAGAACAATAATTACGTTGACTACCAACAAGGTTGATCATGTTGAAAATACAAAAGGAAGTGATAATAAAACAATAACTGGACTTCTTTCTGCTTCTTCATCCAATCCATCTATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTGGAAATGCATTGAAATGGGTGAAAGAAATGAAGGAGATGGAAGAGGAATCAAAGGAGAAGCTGAATTATCTTAGTGGTTTTGTTGTTGCCTTAAGAGATCATATTCATACTGATATTTTAATTAAACCTGGCAATGATGCTCCTTCTATACCAGCACATAGAGCTCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAGATCTGACATATTCAAAAACATACTGGACTCAGATGGATGTAAAGCTCCACCAAGTAACAACACGATAACGTTGTCTGAACTAAACTACGATGAATTAGAGTGTCTATTAGAGTTCCTGTACAGTGGAGATTTGGCTAAAGAGAAGGTGGAAAAACATGTATATTCCTTGTCAATTGCAGCAGATAAGTATGAGATTCCCTTCTTGCAGAGATTTTGTGAGAAATCAATGTTGGGATCATTGAACACATCGAATGCTCTCGACGTTTTAGAGATATCTGATACTTGTTCTAATACGTCGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305833" ref_strand="+" ref_description="SGN-E305833 [cLEX-14-P9]">
      <seq>gccatcatctctaagtccacttctcttattttaaatcgatcatcgtctcttcttcattgatcatttgagttcagtaatttcttcttcgaatattgatcagaaaaaaattaatcgaagcgcacaaataaatatggattgttctatatgtagcgcgatgccatttattttaaggccaccaagaaatacaatatgtgcagcttgttacgaaggagctagaacaataattacgttgactaccaacaaggttgatcatgttgaaaatacaaaaggaagtgataataaaacaataactggacttctttctgcttcttcatccaatccatctattaagggatttggaaatgcattgaaatgggtgaaagaaatgaaggagatggaagaggaatcaaaggagaagctgaattatcttagtggttttgttgttgccttaagagatcatattcatactgatattttaattaaacctggcaatgatgctccttctataccagcacatagagctcttctggcagcaagatctgacatattcaaaaacatactggactcagatggatgtaaagctccaccaagtaacaacacgataacgttgtctgaactaaactacgatgaattagagtgtctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79498" stop="83232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79798" g_stop="80128" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80129" i_stop="82135" i_length="2007">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82136" g_stop="82312" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="508" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82313" i_stop="82816" i_length="504">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82817" g_stop="82932" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="624" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E305833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79798" e_stop="80128"/>
          <exon e_start="82136" e_stop="82312"/>
          <exon e_start="82817" e_stop="82932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCATCTCTAAGTCCACTTCTCTTATTTTAAATCGATCATCGTCTCTTCTTCATTGATCATTTGAGTTCAGTAATTTCTTCTTCGAATATTGATCAGAAAAAAATTAATCGAAGCGCACAAATAAATATGGATTGTTCTATATGTAGCGCGATGCCATTTATTTTAAGGCCACCAAGAAATACAATATGTGCAGCTTGTTACGAAGGAGCTAGAACAATAATTACGTTGACTACCAACAAGGTTGATCATGTTGAAAATACAAAAGGAAGTGATAATAAAACAATAACTGGACTTCTTTCTGCTTCTTCATCCAATCCATCTATTAAGGTATGTATATATCATCATCTCTTTCTTCAAATTAGCGACAGATAAAATTTCATAGCTAAATGATAAAAATGTCACGTTAATCCCATTTAGCTATGGATTGATGATGGAGTATAGGAAAATTCAATTATCTTATGAGTTTTTTTTATAACATTTTGTTACTTTGAATTGTAGACAAATCTCATATATATATATATATATAACAAAATATGTGAAAGATGTTGCACATATAAAGAAGCTAATATTAATTCCTAAAAAGTATTTTAAGAAAAATGTGGGAATTTAGGACCAAAATGGAAAATATAAATGGTTGCCTCCATTGTTAGATATTTACAAGAAGATTTGGAGAAGGTTAGTTTATTTAGGTTACATTTCGTTTAATTATTTTTTTGTTTACTGATGATTTTGATTATAAATAAGCAAGGAGAACAAAGAGAAATTGGAAATTTAGAGTGCAGCGTGCAAAAACAATTTGCAAGGCAGTAGGTTGAGGCTAAACTTGTGTAGCACAAACCACTTTGTTTTACTAATTACTTTGTTCCAAAATAATGACATGATTAATTAGCAGTTGAAAGAGATGCTGATGTCTAGTTTTGCTCTATTTTTTGAATATTGATATGGATATTGTTTTCTTGATTTTCTTTTGGGGGGTGGGTGGGTTGGGGGAGGCTCAAAATTCACATATGGGGAAATTGCAGATTTATCACTTAAAATTAAAATTAGAATTATTAAAAATATATTCTCTTCGACTTATTTTATGTGACATCATTTCTTTTTTAAATTCTCCAAGAAAAAAATCATCTTACTGATAATTAGAAACAATTTTACTTAAAAATTTTCTTCTCACCCTTGATAAAATGATTTACAACCACACAATTATCAAAAGTTTATTTTAAATCACAAGTTTTAAAAGTTTTTTTTTTAACATAAAAATCGTACTAAGTCCTCTCCATTACTTATTCTCTCCATTTCTCGAGCTACATACTTGGATGAAAGCCATGTGTTATAATTTAAAATTAAAGTTGGAGATTTATTTATAATTTATAATTTATAATTTTTATACTTTTTAAATTATAACACATAGCTTCCATCCGAGGGTGTATTTAGAGAAATGGAGATAATAAGTTATGGAGAGGATATTCATTGTAAAACAAATGGAGTACAAATTGTCTGACTCTCCCATATGTAATCATGATCATTCTTATTGTTAGGATTGACTTTTTAATTCTTATCTTATAAGTCAAAAATCACAACTTAAAATTTTTAATTTATGAATTCAAATTTATTTTATTATGTTTTAGCTTAAGATTAAATATTTAAGAGTATCTTTTTAATTCACGCAAATATTTTAAAAATTGATTAAAAGCTATTTTAACTTTAAAATATTTGAAATAATGGAAAACTTATGGAAGTCCCACTAATTTAGGGGCTAATTATTTTGATATATTCAGTTTGCAATATTACGAATCTTATCAGATTTTTACATGAGATTAAAATTAGGTGTAATTGTTTTAGAGACATTATATTCATATAGATTCATACGTATCCGTATACATTATATCCAAGTGGATTCACATGTATCTAGAAAACACAGCAAATCTCACTTATCTCCCTCCTATCCTGAATACATGCACATACCAATTTATATGTCTAGTGTCATTCACATGTATCTAGTATATATATCTGATATACATGACTATCTCGCTCGTCTCACTCGCCTCTCCCTAATATTGTATATCTAGTAGTAAAAATATATGTATATCTAGATGTATATAGGAAATTCATAATTAATGGTAAGATATGTAATTGTCTAAAAGTATACATAGAAAATTACTATATATAATGTATAAATACATATATGTCTAATAAGCTAGTTGTCCTAGAATAAAAGCAATTAACTTGATGAAAATATAAATGGACGAGCTTTCTACAAAGCTGAAAAGCTATATCTTCATAAGAATTCATTGAAGTGACATAAAAATATTGAATATTTTGTCTAACTGATTCCAGGGATTTGGAAATGCATTGAAATGGGTGAAAGAAATGAAGGAGATGGAAGAGGAATCAAAGGAGAAGCTGAATTATCTTAGTGGTTTTGTTGTTGCCTTAAGAGATCATATTCATACTGATATTTTAATTAAACCTGGCAATGATGCTCCTTCTATACCAGCACATAGAGCTCTTCTGGTAATAAAACACGAGGTTTTGACCAAACTAAGCCATTATATAAAGCAATTCATCAAAATAATGCATTTTTCTAAAATTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGGTATATTTTATTTTTAAAAAATTGACGGTTAGATTGATATACGTTACTCAGAGTAACGTTTCACTCCTAAAGTGTTATTCACAGTAACGTTTTAGGAGTAAAACGTTACTCAAAATAACGTTTCAGGAGTAAAACGTTACTTATAGTAACGTATATCAACCTAACGCTGTTAGTTTTTAAAAAATGAAATAAACCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTATAAAATTTTAGAAAAATGTATTATTTTGATAAATAGCTTTAGATAATGATTCAGTTTGATAAAAAATTCAATAAAACACACCAAACTAGCTATTAACTGACTACATTTCCATTATCTCACTTCTGTTAAACATTTTACTTGTATTTAACAGGCAGCAAGATCTGACATATTCAAAAACATACTGGACTCAGATGGATGTAAAGCTCCACCAAGTAACAACACGATAACGTTGTCTGAACTAAACTACGATGAATTAGAGTGTCTATT</genome_strand>
        <mrna_strand>GCCATCATCTCTAAGTCCACTTCTCTTATTTTAAATCGATCATCGTCTCTTCTTCATTGATCATTTGAGTTCAGTAATTTCTTCTTCGAATATTGATCAGAAAAAAATTAATCGAAGCGCACAAATAAATATGGATTGTTCTATATGTAGCGCGATGCCATTTATTTTAAGGCCACCAAGAAATACAATATGTGCAGCTTGTTACGAAGGAGCTAGAACAATAATTACGTTGACTACCAACAAGGTTGATCATGTTGAAAATACAAAAGGAAGTGATAATAAAACAATAACTGGACTTCTTTCTGCTTCTTCATCCAATCCATCTATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTGGAAATGCATTGAAATGGGTGAAAGAAATGAAGGAGATGGAAGAGGAATCAAAGGAGAAGCTGAATTATCTTAGTGGTTTTGTTGTTGCCTTAAGAGATCATATTCATACTGATATTTTAATTAAACCTGGCAATGATGCTCCTTCTATACCAGCACATAGAGCTCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAGATCTGACATATTCAAAAACATACTGGACTCAGATGGATGTAAAGCTCCACCAAGTAACAACACGATAACGTTGTCTGAACTAAACTACGATGAATTAGAGTGTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543911" ref_strand="+" ref_description="SGN-E543911 [TUS-65-P14](-)">
      <seq>acaatatgtgcagctgttacgaaggagctagaacaataattacgttgactaccaacaaggttgatcatgttgaaaatacaaaaggaagtgataataaaacaataactggacttctttctgcttcttcatccaatccatctattaagggatttggaaatgcattgaaatgggtgaaagaaatgaaggagatggaagaggaatcaaaggagaagctgaattatcttagtggttttgttgttgccttaagagatcatattcatactgatattttaattaaacctggcaatgatgctccttctataccagcacatagagctcttctggcagcaagatctgacatattcaaaaacatactggactcagatggatgtaaagctccaccaagtaacaacacgataacgttgtctgaactaaactacgatgaattagagtgtctattagagttcctgtacagtggagatttggctaaagagaaggtggaaaaacatgtatattccttgtcaattgcagcagataagtatgagattcccttcttgcagaaattttgtgagaatcaaatgttgggatcattgaacacatcgaatgctctcgacgttttagagatatctgatacttgttctaatacgtcgttaaaggagacagcgttaaacttcattgttaaaaacatggaggatattgtgtttactgctagatttgatgcatttgcactcaagaatcctcatttaactgtacaaattactagggcttcttttatagacattaaaaatagaaggcttactgttgattaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79682" stop="83583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79982" g_stop="80128" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80129" i_stop="82135" i_length="2007">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82136" g_stop="82312" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="323" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82313" i_stop="82816" i_length="504">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82817" g_stop="83280" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="786" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="787" polyA_stop="797"/>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E543911" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79982" e_stop="80128"/>
          <exon e_start="82136" e_stop="82312"/>
          <exon e_start="82817" e_stop="83280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATGTGCAGCTTGTTACGAAGGAGCTAGAACAATAATTACGTTGACTACCAACAAGGTTGATCATGTTGAAAATACAAAAGGAAGTGATAATAAAACAATAACTGGACTTCTTTCTGCTTCTTCATCCAATCCATCTATTAAGGTATGTATATATCATCATCTCTTTCTTCAAATTAGCGACAGATAAAATTTCATAGCTAAATGATAAAAATGTCACGTTAATCCCATTTAGCTATGGATTGATGATGGAGTATAGGAAAATTCAATTATCTTATGAGTTTTTTTTATAACATTTTGTTACTTTGAATTGTAGACAAATCTCATATATATATATATATATAACAAAATATGTGAAAGATGTTGCACATATAAAGAAGCTAATATTAATTCCTAAAAAGTATTTTAAGAAAAATGTGGGAATTTAGGACCAAAATGGAAAATATAAATGGTTGCCTCCATTGTTAGATATTTACAAGAAGATTTGGAGAAGGTTAGTTTATTTAGGTTACATTTCGTTTAATTATTTTTTTGTTTACTGATGATTTTGATTATAAATAAGCAAGGAGAACAAAGAGAAATTGGAAATTTAGAGTGCAGCGTGCAAAAACAATTTGCAAGGCAGTAGGTTGAGGCTAAACTTGTGTAGCACAAACCACTTTGTTTTACTAATTACTTTGTTCCAAAATAATGACATGATTAATTAGCAGTTGAAAGAGATGCTGATGTCTAGTTTTGCTCTATTTTTTGAATATTGATATGGATATTGTTTTCTTGATTTTCTTTTGGGGGGTGGGTGGGTTGGGGGAGGCTCAAAATTCACATATGGGGAAATTGCAGATTTATCACTTAAAATTAAAATTAGAATTATTAAAAATATATTCTCTTCGACTTATTTTATGTGACATCATTTCTTTTTTAAATTCTCCAAGAAAAAAATCATCTTACTGATAATTAGAAACAATTTTACTTAAAAATTTTCTTCTCACCCTTGATAAAATGATTTACAACCACACAATTATCAAAAGTTTATTTTAAATCACAAGTTTTAAAAGTTTTTTTTTTAACATAAAAATCGTACTAAGTCCTCTCCATTACTTATTCTCTCCATTTCTCGAGCTACATACTTGGATGAAAGCCATGTGTTATAATTTAAAATTAAAGTTGGAGATTTATTTATAATTTATAATTTATAATTTTTATACTTTTTAAATTATAACACATAGCTTCCATCCGAGGGTGTATTTAGAGAAATGGAGATAATAAGTTATGGAGAGGATATTCATTGTAAAACAAATGGAGTACAAATTGTCTGACTCTCCCATATGTAATCATGATCATTCTTATTGTTAGGATTGACTTTTTAATTCTTATCTTATAAGTCAAAAATCACAACTTAAAATTTTTAATTTATGAATTCAAATTTATTTTATTATGTTTTAGCTTAAGATTAAATATTTAAGAGTATCTTTTTAATTCACGCAAATATTTTAAAAATTGATTAAAAGCTATTTTAACTTTAAAATATTTGAAATAATGGAAAACTTATGGAAGTCCCACTAATTTAGGGGCTAATTATTTTGATATATTCAGTTTGCAATATTACGAATCTTATCAGATTTTTACATGAGATTAAAATTAGGTGTAATTGTTTTAGAGACATTATATTCATATAGATTCATACGTATCCGTATACATTATATCCAAGTGGATTCACATGTATCTAGAAAACACAGCAAATCTCACTTATCTCCCTCCTATCCTGAATACATGCACATACCAATTTATATGTCTAGTGTCATTCACATGTATCTAGTATATATATCTGATATACATGACTATCTCGCTCGTCTCACTCGCCTCTCCCTAATATTGTATATCTAGTAGTAAAAATATATGTATATCTAGATGTATATAGGAAATTCATAATTAATGGTAAGATATGTAATTGTCTAAAAGTATACATAGAAAATTACTATATATAATGTATAAATACATATATGTCTAATAAGCTAGTTGTCCTAGAATAAAAGCAATTAACTTGATGAAAATATAAATGGACGAGCTTTCTACAAAGCTGAAAAGCTATATCTTCATAAGAATTCATTGAAGTGACATAAAAATATTGAATATTTTGTCTAACTGATTCCAGGGATTTGGAAATGCATTGAAATGGGTGAAAGAAATGAAGGAGATGGAAGAGGAATCAAAGGAGAAGCTGAATTATCTTAGTGGTTTTGTTGTTGCCTTAAGAGATCATATTCATACTGATATTTTAATTAAACCTGGCAATGATGCTCCTTCTATACCAGCACATAGAGCTCTTCTGGTAATAAAACACGAGGTTTTGACCAAACTAAGCCATTATATAAAGCAATTCATCAAAATAATGCATTTTTCTAAAATTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGGTATATTTTATTTTTAAAAAATTGACGGTTAGATTGATATACGTTACTCAGAGTAACGTTTCACTCCTAAAGTGTTATTCACAGTAACGTTTTAGGAGTAAAACGTTACTCAAAATAACGTTTCAGGAGTAAAACGTTACTTATAGTAACGTATATCAACCTAACGCTGTTAGTTTTTAAAAAATGAAATAAACCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTATAAAATTTTAGAAAAATGTATTATTTTGATAAATAGCTTTAGATAATGATTCAGTTTGATAAAAAATTCAATAAAACACACCAAACTAGCTATTAACTGACTACATTTCCATTATCTCACTTCTGTTAAACATTTTACTTGTATTTAACAGGCAGCAAGATCTGACATATTCAAAAACATACTGGACTCAGATGGATGTAAAGCTCCACCAAGTAACAACACGATAACGTTGTCTGAACTAAACTACGATGAATTAGAGTGTCTATTAGAGTTCCTGTACAGTGGAGATTTGGCTAAAGAGAAGGTGGAAAAACATGTATATTCCTTGTCAATTGCAGCAGATAAGTATGAGATTCCCTTCTTGCAGAAATTTTGTGAGAATCAAATGTTGGGATCATTGAACACATCGAATGCTCTCGACGTTTTAGAGATATCTGATACTTGTTCTAATACGTCGTTAAAGGAGACAGCGTTAAACTTCATTGTTAAAAACATGGAGGATATTGTGTTTACTGCTAGATTTGATGCATTTGCACTCAAGAATCCTCATTTAACTGTACAAATTACTAGGGCTTCTTTTATAGACATTAAAAATAGAAGGCTTACTGTTTGATT</genome_strand>
        <mrna_strand>ACAATATGTGCAGC-TGTTACGAAGGAGCTAGAACAATAATTACGTTGACTACCAACAAGGTTGATCATGTTGAAAATACAAAAGGAAGTGATAATAAAACAATAACTGGACTTCTTTCTGCTTCTTCATCCAATCCATCTATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTGGAAATGCATTGAAATGGGTGAAAGAAATGAAGGAGATGGAAGAGGAATCAAAGGAGAAGCTGAATTATCTTAGTGGTTTTGTTGTTGCCTTAAGAGATCATATTCATACTGATATTTTAATTAAACCTGGCAATGATGCTCCTTCTATACCAGCACATAGAGCTCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAGATCTGACATATTCAAAAACATACTGGACTCAGATGGATGTAAAGCTCCACCAAGTAACAACACGATAACGTTGTCTGAACTAAACTACGATGAATTAGAGTGTCTATTAGAGTTCCTGTACAGTGGAGATTTGGCTAAAGAGAAGGTGGAAAAACATGTATATTCCTTGTCAATTGCAGCAGATAAGTATGAGATTCCCTTCTTGCAGAAATTTTGTGAGAATCAAATGTTGGGATCATTGAACACATCGAATGCTCTCGACGTTTTAGAGATATCTGATACTTGTTCTAATACGTCGTTAAAGGAGACAGCGTTAAACTTCATTGTTAAAAACATGGAGGATATTGTGTTTACTGCTAGATTTGATGCATTTGCACTCAAGAATCCTCATTTAACTGTACAAATTACTAGGGCTTCTTTTATAGACATTAAAAATAGAAGGCTTACTG-TTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577986" ref_strand="+" ref_description="SGN-E577986 [LE08CD09]">
      <seq>taccaccccaaccgaacctccacaactacaacctacataaacatcagcacaacctaacaactcacagtttacatagaacgtaactctacaaaaacatttagacaaattacatatcctccacaacaacactttaacaaattacatatcctcaacatcaacacttaaacaaattagatatcctcaatagcaacacttccaaaaatttacatatcctcaataacacacttcaacaaatcacatatcctcaacaacaacacttcaacaaattatatatcctcaataacaagctcagtattcaacaatcacaagttccgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="+" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83703" stop="90362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84003" g_stop="84145" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84146" i_stop="89885" i_length="5740">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89886" g_stop="90062" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="319" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="+" ref_id="SGN-E577986" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84003" e_stop="84145"/>
          <exon e_start="89886" e_stop="90062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCACCCCCAACCGAACCTCCACAACTACAACCTGAATAAACATCAACCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAACAACACTTTAACAAATTATATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAACTTACATATCCTCAATAACACACTTCAACAAATTACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTTCGCAAAACGGCAATCACTAGATCAGCAAAACACAATATCAAGTTCACTAATGATAAGTATGTGCAATGTAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATTTGTCGCGGCGCACGACACGACCCTCGATAACAGTAATCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTACCCATCGCGGCGTGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTATCATTCTTTCTCAATGCACATAACACTTTCACAACCATGTCTCAGAATAATGCAATGACATGTTCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCACAGTTCACAACCACACAAACATGAAATCACATCAACAATGATTCAACAAGCCATCAAACTTTTCTCAACACATCACACATAAATAATTAATCACATCGCCTTTTGTTATCCCTTTTATTTCATCATTAGAATTAATCAATGTGGACAAGTCAACCCATCACCAATTCCGTTACTCCCAAACATATATCACAAGGAAATACACGCATTCCATACACTTAACAAGAGTTTAGAAATCCACTTGCCTCAATCAATCAAGAATTCAATCTGAAACTTGAGCCTTTCTCTTTCGTTGAACTTTCAACTCAAAGTAATCTATTCAATTAAATGACCTACATAAGATTTCAAGACTAATTAACAATAATCAAATCTATAATCAAGTTCCTAATCTTGATGTCAATTAGCATATCAATTCTCATATTTCCAAATTTCAAGTCTAGGGTTAAGTTTCAACTTCTCCATTATCATAAATTTAATTGTTATCATATAACTTTACCATCATATTTAGTTACATAATAATGTATCAAGCTATGATTATTTAAAATATAATGATTATAAGGCATATAAAAAAAAGAAAAAGAAAATAAGTGACAATAATAATATGGTTCATTATGTTGAAATGCTAGAATTAACAATGCCTTTATCATTAGGCAATAATTAGCCAATGATTAGGCTATTGTTTTGTGCACATTAACAATTTCACCTTCTTTCTGTCAATACAATTCATATTCAAAAACTTAAATTAAGCCGTAGGATAGTAACGGAATACGAGTAATTCTTTACCTAAAAGTGAAGTTTGGACTTCCACGTTGATCGCCTCTTAGCGCAGGTGATTTATGTTCTCCTCTTGAATCTCTTCTCTAAATTATGTACTAAACTGACAAACCCTACTTCTTATTTTAATATATAAGGGTTAAATAGTACATGGTCTTAAATAAATTATCACTTTAGTCCATTAAATTTTAATTAATTTAATTATCTATAATTACCCATCAACAAATTAACTAAAGTTAAAAGAATAGTTTAGAATTTTCAAAAAAACTGATTTTTTTTTGGGTCATTACATCATCCACCACTAAAAACTATGTTCGTCCTCGAACATAAGGAAGAAAAAGGAAATATAACCATATTACCGAAATCTTATGTTATGACCTACTAGTTTGGGTTCATTGCTCCAAGTAAGCTCATCCTTAAAACCATTCCATCAAGATCAACTATTAAGAACTAATTTTTTCTTTAATCAAATTTTGAAAGGTTTACAAATCAGGAGTGATTATTAAGTCTTAGACTGACACATTAACTCAATCTAAACTAAAACTCATTGAACCTTAACACACCCATCAAGATGACTCTTATCTCACGTAACCAAGATAACCTTATGAATCAAAACTGGCTACAACTATGAGTGACCATGAATCAACCACGAGACATGCATAATGCAGAAATGATCACTTTTATTTTCAAGATTCCCTTATCACAACACAATCTTTCCGTGAACTTAAGTCATAAAAAAAATGTATTTCTAGACATCGAGTACTCATTAAGGGAGAATCAAACTTATCCAACCCAAAGAAGAAAGTTATCGAGTAAACACCTAGCAAATGATACACCCATGCATATAGAACCTCTAACAACACTCTCAAATAAGTGTAACTTTTCACGGAAGCTCTTCTATAAGTTTTCATAATAAAGGTTGTGTATGTATACATATTGAGATACTTTAACTATTTCAACAACGCCAAATTATCAAAATGAAATGACCAAGTCAGTCAAAGGCTCCTACTCTATCAAGAGGAAATAAGAGGATCGGCACATCCGATCCACCACTAAGAATTCACTCATAGGTGTGGAACCACGCGTAATATAAGTAATGAATCATACTATAAATAGTGTCCAATACGAAGAAGGTTGTCACATAAGAATTTACAAAACCAAGGTTGAATAACACTAAAAACTTCTTCCATAATTCCCACATCAAATATTCCATTCATTTGAGTACATCTCTCGATTTTTATCCACACACAACCAACCAGTTTGATCCCTGTTTTGTTAGTACCAAACCCCACATACTTTTCACAATAATCCAATGTATCTAAAACTCTTAATACCAATAAACATTATAGGCACACCATCCATTTACCTTACTATTAAACCGTCTCTGGTATTAAAGTATTCTTAGCGAACACATTATCGCCTTAAAATTATTTTTTTTGAACTAGGTCTTCCTCTCTTTCCCTTTTAAGCATCGCATGACAACAATGAGTCACACCCAAGAGTGATAGCACTAATTACCAGTCTAAAAATACTTTTCCATTGAGGTAAAATAATTGAATCACAATGTCAACTTCACGTAAATTTTCAAATACCATTTTTCAACTTCCTATTCATACCATCATATATCTCATATCAACACTTAAGAAACTGTTAGTCACCCCAATAATCCTATATATTATAAGCTCATAATCTCTACTAACCATCAAATTTCTATGTAACACATTATAACAATCTACATAGTCCCATCAACAAAGTAGTTTCAGTCCCATCAAAATCTTTATTAATCGTATAGAATTGTAGGTCCACATTGTTGAATATAAATAAGGTACCTATCATATTGAATAACTTAACTCGACATAATAACATAAAATATTCCACACATAGTTGCTTGTCACCTAACCAAAACTCAATTTTTTAAGAAAAATCGATAAATAACTCGTAATAAGTCTTTGTAGGACTAGTTCATCTCACAGTCATATCTAACGTCATAGGTGAAAATCAATAAATCGTCCAACTACCAACCAAGGGCTTATACGAGTGTCTTATTCCTTCACTTTTCTTAAATTCTTCTTAGGACGGAAAATTCTGAATATATTAATTTTTTTATATACACCACATTCTTGTTCCTTGTCTAACCACCTTACCAATCTTATTCTTTGGCTAACATCCCATACAATGTAAATCAATTCCTTGATAGAAATACTTTCTTAGGTCCTTTAACAATTAAAAGTAACAAACTCTACGATCCTAACCTTGCACATGTTATTTTAAATTCTCAATATCTGATGCTATCGATCAATTCTTACTTTAATTATTCATACCTCCATAAAACACATTACCACAAACCTAAATTTACCATGAAAAACTTGAGTTTTGGACCCAACTGTGTAACCCATTCCCTTTATCTATGAACATTAATTCATATCTTAAAGATTTTATGAATTCACGTATCTTAGCTTCTCATTGGTCGCCTATCCATCGACCTTATCATATTTTTCACAATCTTATCATATTCAATATCAAACTCAAAATCATAAAAGAATTTATTATCACACTCAAGTCAAATGTCTTTAGACTTCTTTCTTAAATTTTATCAAATAGTATTGAACCAATATTATGAACATGTGACACTATTATCATAATTAGAGCATAATAGATGAGATCACATGTCGATAAACTCCATCTTCTACCATATGAAGATATATCTTTTGTACTTGCACTCAAAGTAAATATCTTTGTTCTCGATCACCTCCTTCAAATGACTAAACTAGATCCCACTAATTCTTTTCATTTGTGACTCTAGCTCTTTTCAATTTTATTTAAGCAGAGTCACAACACCTCTTATAACTTTTCATGCAACAACGTTACTCATCAAAAAGTAGCAGATCATAGCGATAAATACTCGCAGGTCGTTACTATCATAAAAAAATCATTTAACCCACAATCTTTATCATATAGTTATGTCTCAGTCACAATCCATCACAAACTCTTATTACCAATATGATCACTTAGCATTTGTCATCACCACGAAGTCAACATTCTCAATGACATGACACCTCAAATCCAGTTATACCAACAAAATCAAAGGACTAACCCGATTTTATATGTATTTTTTTACTATAATCTTCAATTATCTTTACACAAGTATACTCTTTGAGACTTTTCTTACCCATAAGTTCTTTTTCATTCTGGTATATCCATTCCCTTCGACCACTTCTCAATTAGAAACATCGAGATACACTCCATAAATTGACGTATTAATATCATTCCAACAATCCACCACTAAAACATCCCTTATAACAATGTTTTAACTCAAGCAACCGTAGTAACAAACTAGTTAGTTTCTCAAATATGAATGTAACATTGAATCTAATTGTACGAACATGTGATATAACTTATAACTCTTTAAGTAGTTAATATTCACACTTGACAATCGACGTATTCATTTCCATACCACTAGCGTCACACTGCAAAAATTAATTTAATTCACCACTAGAACATATCATACATATCGAGAAGATCGCACCCAACTAAACCACACATTTCTACCAATCAAATAGACGTAAAATATTACAAAATTTGTTCCATATCTAGCCTTTCCTTTAATACTTTCACTTTCGGTTCTCGAACTATTTTCGATTCCGCCTATACGACAGAAGTACTATATTATTTATTTATTTTACTATGGTCACTAACCTTAATCAACCCCTTCAAATATGATCACACATTTGTTTCATAAGTATATCATTTTCACCTTAATACCAGATCTAACATCAAACCAATACACGACATGCCAATGATTCACAAAAGGAACTACGCACGAGTCATCACATAAATGAGAGAAAGAATGAAATGAAGTAAGAATCAAAACGGACAAAGAATGCACGATAGAGATTCAAAAAGTGAAGATATTTTCTAAAAGTCACTGAAGCCTCTCGAAGATAAGTATAGACGTCTCCATACAGATCCTCAAGAGTCTACTTAGACTCGTCTTGTACACACGTGAGACCTATGAACCAGGGGCTCTGATATCATTTTGTCACGACCCAAAAATGGGCGTGATGGCACTCGTCTTATCCCACCAAGACAAGTAAGCCTAAAACTCAACTATTACAATAAAAATGCGGAAAATTTACTATCAACTTACATTATACCCCAAAATCCGGTTGTCACGTGTACAAGCCTCTAAAGTTTTACAATCGGATCAAAAGAAAATATAAGTCTCATATGATATTGTTTCTAGAGTAGAACAAAATCATAAACAAGAGTAAAGAGGGATGCTGAGATGACCAACAACTACCTCAATAGCAACACTTCCAAAAATTATATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATTACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTTCGCAAAA</genome_strand>
        <mrna_strand>TACCA-CCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCACAACCTAACAACTCACAGTTTACATAGAACGTAACTCTACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539191" ref_strand="+" ref_description="SGN-E539191 [TUS-58-N4]">
      <seq>cttgtggtatatgtttgggagtaacgggattggtgatggattgacttgtccacattgattaatttaatgatgaaaaaaaaaggataaaaaaaaaggcaatgtgattaaatatttaagtgtgatgtgttcagaaagggatgaaggattgttgaatcattgttgatgtgatttcatgtttgtgtggttttgaattgtgcaatgttatgaaaatggtcatctcctcattatttgtgtgaacttgccatctgcattattatgaggcattggttgtgacaagtgttatgtgcattgagaaagaatgagtacttaagaggatgtacaatttcgagggacgtatcgcgcgccgcgatggatactatatttcgagggacgtatcgcatgccgcgatggatactatattttgagggacgtatcgcgcgccgcgatggttactattatcgagggtcgtgtcgtgcgccgcgacagatgcatggacagatatgtcccccatggttcccagactgagagacagcgggtgtgtatcactaggtcagacatgcatcattatacttgacaatgcattacacatacttatcattggtgaacttgatattgtgttttgctgatcttgtgattgaatttctgcgaaatttgtgattgatgaatactgagcttgttattgaggatatataatttgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90988" stop="83993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90688" g_stop="90001" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E539191" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90688" e_stop="90001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGATATATGTTTGGGAGTAACGGAATTGGTGATGGGTTGACTTGTCCACATTGATTAATTCTAATGATGAAATAAAAGGGATAAC-AAAA-GGCGATGTGATTAATTATTTATGTGTGATGTGTTGAGAAAAGTTTGATGGCTTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTGTGAACTGTGCAATGTTATGAAAATGGTCATCTCCTCATTATTTGTGTGAACATGTCAT-TGCATTATTCTGAGACA-TGGTTGTGA-AAGTGTTATGTGCATTGAGAAAGAATGATAACTTAAAGAGGATGTACCATTTCGAGGGACGTATCGCACGCCGCGATGGATACTATATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGCGCGCCGCGATGGTTACTGTTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGGACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACATGCATCATTATACTTGACATTGCATTCCATTACATTGCACATACTTATCATTAGTGAACTTGATATTGTGTTTTGCTGATCTAGTGATTGCCTTTTTGCGAAACTTGTGATTGTTGAATACTGAGCTTGTTATTGAGGATATATAATTTGTTGAA</genome_strand>
        <mrna_strand>CTTGTGGTATATGTTTGGGAGTAACGGGATTGGTGATGGATTGACTTGTCCACATTGATTAATT-TAATGATGAAAAAAAAAGGATAAAAAAAAAGGCAATGTGATTAAATATTTAAGTGTGATGTGTTCAGAAAGGGATGAAGGATTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTTTGAATTGTGCAATGTTATGAAAATGGTCATCTCCTCATTATTTGTGTGAACTTGCCATCTGCATTATTATGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATGAGTACTT-AAGAGGATGTACAATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGCATGCCGCGATGGATACTATATTTTGAGGGACGTATCGCGCGCCGCGATGGTTACTATTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGTTCCCAGACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACATGCATCATTATACTTGACA----A-TGCATT--A---CACATACTTATCATTGGTGAACTTGATATTGTGTTTTGCTGATCTTGTGATTGAATTTCTGCGAAATTTGTGATTGATGAATACTGAGCTTGTTATTGAGGATATATAATTTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372031" ref_strand="+" ref_description="SGN-E372031 [TUS-30-B6]">
      <seq>agaaaagagcctcagtattgcatgacaaattgcaacttcttcgatcaatcactaaatctcatgctcttagtgaaagctcaatcattgtagatgcatcaaaatatattcaagaactcaaacacaaagtggaaaggctaaatcaagacataactactactacccctcaaactaattcaaacaacaacacttcttcatggccacaaattgaagtggaaaccctagaaaaaggtttcttagtaaatgtatattcagaaagaagttgccctggtttgcttgtttccatattacaagttcttgaagaccttggccttaacgtacttgaagctagggtttcttgcaccgacacctttcgtttacaagcatttggtggagaggatgaagaaaccatgattaatgcccaagtggtgacagaggcagtttttgaagctattaagaactggagtgaaagcaaagaacaaggctaattaatcaaatatataatatagtttaattagctattattaattattactatattcactctttcgtttttctctttaattttaactttcccgatcatcttcctagctagctatgatagttatattaattatcgataagattattggctagttcattaatatcaatattaatgatcaaagatcattcattttgcccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113079" stop="111077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112779" g_stop="112715" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112714" i_stop="112210" i_length="505">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112209" g_stop="112075" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="200" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112074" i_stop="111978" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111977" g_stop="111804" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="374" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111803" i_stop="111661" i_length="143">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111660" g_stop="111369" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="666" r_length="292" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E372031" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112779" e_stop="112715"/>
          <exon e_start="112209" e_stop="112075"/>
          <exon e_start="111977" e_stop="111804"/>
          <exon e_start="111660" e_stop="111369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAGCCTCAGTATTGCATGACAAATTGCAACTTCTTCGATCAATCACTAAATCTCATGCTGTAATTTTCTAATCCATTCTACTTATATGTAACCTTCTCTTCTCATTCTTCAACATTTTTTTTTGGGTATAGGGAAAAAGAATTATGAGATGGGGAATCAAACTCTAATTGATTAGGTGAAAGTTCAGACAGTCAATCAACTGAGATACAAAGATTTCTCTGATTCTTCAAAATTAATTTTTCATTGATTTTGTGTTTTTGTGGCAATCAATATACTCTTTTATCTGCTCCGCAACTCAAAGAGAGTAAAAAAGAGAATTAAACATGACATGACATGACATTTATTTGTTCTTAACTCTATATATGTAAACATTCATTTTGTTATACTTTTTTTAGTAGTATTAGATAAATTATTGATGAATATATATACAAGTAGAATATAACCAATTTTGAGGTTTCTAATTTTTTAATTTTGACCCTATGAATTGTAGATTTACATTGCCTCTTCTATTTGTTGCAATTCCCAAGTTCAAAGTGTGACTAATTAATTTGCATTTTCATGCAGCTTAGTGAAAGCTCAATCATTGTAGATGCATCAAAATATATTCAAGAACTCAAACACAAAGTGGAAAGGCTAAATCAAGACATAACTACTACTACCCCTCAAACTAATTCAAACAACAACACTTCTTCATGGCCAGTAAGTTTTTGACTCATCTCCTTTTCTTGACTCTCTAATACTTTTAAAACATTCAAAGGTGATCAATCGATCGATGATTCTGTATTTTGTTTTCCAGCAAATTGAAGTGGAAACCCTAGAAAAAGGTTTCTTAGTAAATGTATATTCAGAAAGAAGTTGCCCTGGTTTGCTTGTTTCCATATTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTTTCTTGCACCGACACCTTTCGTTTACAAGCATTTGGTGGAGAGGTAATTATTCTTTCATCTACGATTACTAGTCAAATTTTTTCTTTTTATTACAAAAAAAAAAGTGTGTAAAAAATTCATTTCTTTCATGTGTGTTTGAAGAATATAATTAATGAGTTATATCCTGAAAAAAATGGTTCTTGTAGGATGAAGAAACCATGATTAATGCCCAAGTGGTGACAGAGGCAGTTTTTGAAGCTATTAAGAACTGGAGTGAAAGCAAAGAACAAGGCTAATTAATCAAATATATAATATAGTTTAATTAGCTATTATTAATTATTACTATATTCACTCTTTCGTTTTTCTCTTTAATTTTAACTTTCCCGATCATCTTCCTAGCTAGCTATGATAGTTATATTAATTATCGATAAGATTATTGGCTAGTTCATTAATATCAATATTAATGATCAAAGATCATTCATTTTGCCCAGGATTCTA</genome_strand>
        <mrna_strand>AGAAAAGAGCCTCAGTATTGCATGACAAATTGCAACTTCTTCGATCAATCACTAAATCTCATGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTGAAAGCTCAATCATTGTAGATGCATCAAAATATATTCAAGAACTCAAACACAAAGTGGAAAGGCTAAATCAAGACATAACTACTACTACCCCTCAAACTAATTCAAACAACAACACTTCTTCATGGCCA.................................................................................................CAAATTGAAGTGGAAACCCTAGAAAAAGGTTTCTTAGTAAATGTATATTCAGAAAGAAGTTGCCCTGGTTTGCTTGTTTCCATATTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTTTCTTGCACCGACACCTTTCGTTTACAAGCATTTGGTGGAGAG...............................................................................................................................................GATGAAGAAACCATGATTAATGCCCAAGTGGTGACAGAGGCAGTTTTTGAAGCTATTAAGAACTGGAGTGAAAGCAAAGAACAAGGCTAATTAATCAAATATATAATATAGTTTAATTAGCTATTATTAATTATTACTATATTCACTCTTTCGTTTTTCTCTTTAATTTTAACTTTCCCGATCATCTTCCTAGCTAGCTATGATAGTTATATTAATTATCGATAAGATTATTGGCTAGTTCATTAATATCAATATTAATGATCAAAGATCATTCATTTTGCCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372030" ref_strand="+" ref_description="SGN-E372030 [TUS-30-B6](-)">
      <seq>gaaaagagcctcagtattgcatgacaaattgcaacttcttcgatcaatcactaaatctcatgctcttagtgaaagctcaatcattgtagatgcatcaaaatatattcaagaactcaaacccaaagtgaaaaggctaaatcaagacataactactactacccctcaaactaattcaaacaacaacacttcttcatggccacaaattgaagtggaaaccctagaaaaaggtttcttagtaaatgtatattcagaaagaagttgccctggtttgcttgtttccatattacaagttcttgaagaccttggccttaacgtacttgaagctagggtttcttgcaccgacacctttcgtttacaagcatttggtggagaggatgaagaaaccatgattaatgcccaagtggtgacagaggcagtttttgaagctattaagaactggagtgaaagcaaagaacaaggctaattaatcaaatatataatatagtttaattagctattattaattattactatattcactctttcgtttttctctttaattttaactttcccgatcatcttcctagctagctatgatagttatattaattatcgataagattattggctagttcattaatatcaatattaatgatcaaagatcattcattttgcccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113078" stop="111077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112778" g_stop="112715" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112714" i_stop="112210" i_length="505">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112209" g_stop="112075" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="199" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112074" i_stop="111978" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111977" g_stop="111804" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="373" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111803" i_stop="111661" i_length="143">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111660" g_stop="111369" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="665" r_length="292" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E372030" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112778" e_stop="112715"/>
          <exon e_start="112209" e_stop="112075"/>
          <exon e_start="111977" e_stop="111804"/>
          <exon e_start="111660" e_stop="111369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGCCTCAGTATTGCATGACAAATTGCAACTTCTTCGATCAATCACTAAATCTCATGCTGTAATTTTCTAATCCATTCTACTTATATGTAACCTTCTCTTCTCATTCTTCAACATTTTTTTTTGGGTATAGGGAAAAAGAATTATGAGATGGGGAATCAAACTCTAATTGATTAGGTGAAAGTTCAGACAGTCAATCAACTGAGATACAAAGATTTCTCTGATTCTTCAAAATTAATTTTTCATTGATTTTGTGTTTTTGTGGCAATCAATATACTCTTTTATCTGCTCCGCAACTCAAAGAGAGTAAAAAAGAGAATTAAACATGACATGACATGACATTTATTTGTTCTTAACTCTATATATGTAAACATTCATTTTGTTATACTTTTTTTAGTAGTATTAGATAAATTATTGATGAATATATATACAAGTAGAATATAACCAATTTTGAGGTTTCTAATTTTTTAATTTTGACCCTATGAATTGTAGATTTACATTGCCTCTTCTATTTGTTGCAATTCCCAAGTTCAAAGTGTGACTAATTAATTTGCATTTTCATGCAGCTTAGTGAAAGCTCAATCATTGTAGATGCATCAAAATATATTCAAGAACTCAAACACAAAGTGGAAAGGCTAAATCAAGACATAACTACTACTACCCCTCAAACTAATTCAAACAACAACACTTCTTCATGGCCAGTAAGTTTTTGACTCATCTCCTTTTCTTGACTCTCTAATACTTTTAAAACATTCAAAGGTGATCAATCGATCGATGATTCTGTATTTTGTTTTCCAGCAAATTGAAGTGGAAACCCTAGAAAAAGGTTTCTTAGTAAATGTATATTCAGAAAGAAGTTGCCCTGGTTTGCTTGTTTCCATATTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTTTCTTGCACCGACACCTTTCGTTTACAAGCATTTGGTGGAGAGGTAATTATTCTTTCATCTACGATTACTAGTCAAATTTTTTCTTTTTATTACAAAAAAAAAAGTGTGTAAAAAATTCATTTCTTTCATGTGTGTTTGAAGAATATAATTAATGAGTTATATCCTGAAAAAAATGGTTCTTGTAGGATGAAGAAACCATGATTAATGCCCAAGTGGTGACAGAGGCAGTTTTTGAAGCTATTAAGAACTGGAGTGAAAGCAAAGAACAAGGCTAATTAATCAAATATATAATATAGTTTAATTAGCTATTATTAATTATTACTATATTCACTCTTTCGTTTTTCTCTTTAATTTTAACTTTCCCGATCATCTTCCTAGCTAGCTATGATAGTTATATTAATTATCGATAAGATTATTGGCTAGTTCATTAATATCAATATTAATGATCAAAGATCATTCATTTTGCCCAGGATTCTA</genome_strand>
        <mrna_strand>GAAAAGAGCCTCAGTATTGCATGACAAATTGCAACTTCTTCGATCAATCACTAAATCTCATGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTGAAAGCTCAATCATTGTAGATGCATCAAAATATATTCAAGAACTCAAACCCAAAGTGAAAAGGCTAAATCAAGACATAACTACTACTACCCCTCAAACTAATTCAAACAACAACACTTCTTCATGGCCA.................................................................................................CAAATTGAAGTGGAAACCCTAGAAAAAGGTTTCTTAGTAAATGTATATTCAGAAAGAAGTTGCCCTGGTTTGCTTGTTTCCATATTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTTTCTTGCACCGACACCTTTCGTTTACAAGCATTTGGTGGAGAG...............................................................................................................................................GATGAAGAAACCATGATTAATGCCCAAGTGGTGACAGAGGCAGTTTTTGAAGCTATTAAGAACTGGAGTGAAAGCAAAGAACAAGGCTAATTAATCAAATATATAATATAGTTTAATTAGCTATTATTAATTATTACTATATTCACTCTTTCGTTTTTCTCTTTAATTTTAACTTTCCCGATCATCTTCCTAGCTAGCTATGATAGTTATATTAATTATCGATAAGATTATTGGCTAGTTCATTAATATCAATATTAATGATCAAAGATCATTCATTTTGCCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347410" ref_strand="+" ref_description="SGN-E347410 [cTOF-33-E3]">
      <seq>tggaagcaaacaaattaaagaggggatattgatatgagagaagagctcctctcttattagttattacatactttatttaaagagacttagctttagagcttgaggaagagaaaaacattaaatctcacaacaatataatggtatcaagggagcagaaaagagcctcagtattgcatgacaaattgcaacttcttcgatcaatcactaaatctcatgctcttagtgaaagctcaatcattgtagatgcatcaaaatatattcaagaactcaaacacaaagtggaaaggctaaatcaagacataactactactacccctcaaactaattcaaacaacaacacttcttcatggccacaaattgaagtggaaaccctagaaaaaggtttcttagtaaatgtatattcagaaagaagttgccctggtttgcttgtttccatattacaagttcttgaagaccttggccttaacgtacttgaagctagggtttcttgcaccgacacctttcgtttacaagcatttggtggagaggatgaagaaaccatgattaatgcccaagtggtgacagaggcagtttttgaagctattaagaactggagtgaaagcaaagaacaaggctaattaatcaaatatataatatagtttaattagctattattaattattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113232" stop="111223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112932" g_stop="112715" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112714" i_stop="112210" i_length="505">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112209" g_stop="112075" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="353" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112074" i_stop="111978" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111977" g_stop="111804" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="527" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111803" i_stop="111661" i_length="143">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111660" g_stop="111523" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="665" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E347410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112932" e_stop="112715"/>
          <exon e_start="112209" e_stop="112075"/>
          <exon e_start="111977" e_stop="111804"/>
          <exon e_start="111660" e_stop="111523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCAAACAAATTAAAGAGGGGATATTGATATGAGAGAAGAGCTCCTCTCTTATTAGTTATTACATACTTTATTTAAAGAGACTTAGCTTTAGAGCTTGAGGAAGAGAAAAACATTAAATCTCACAACAATATAATGGTATCAAGGGAGCAGAAAAGAGCCTCAGTATTGCATGACAAATTGCAACTTCTTCGATCAATCACTAAATCTCATGCTGTAATTTTCTAATCCATTCTACTTATATGTAACCTTCTCTTCTCATTCTTCAACATTTTTTTTTGGGTATAGGGAAAAAGAATTATGAGATGGGGAATCAAACTCTAATTGATTAGGTGAAAGTTCAGACAGTCAATCAACTGAGATACAAAGATTTCTCTGATTCTTCAAAATTAATTTTTCATTGATTTTGTGTTTTTGTGGCAATCAATATACTCTTTTATCTGCTCCGCAACTCAAAGAGAGTAAAAAAGAGAATTAAACATGACATGACATGACATTTATTTGTTCTTAACTCTATATATGTAAACATTCATTTTGTTATACTTTTTTTAGTAGTATTAGATAAATTATTGATGAATATATATACAAGTAGAATATAACCAATTTTGAGGTTTCTAATTTTTTAATTTTGACCCTATGAATTGTAGATTTACATTGCCTCTTCTATTTGTTGCAATTCCCAAGTTCAAAGTGTGACTAATTAATTTGCATTTTCATGCAGCTTAGTGAAAGCTCAATCATTGTAGATGCATCAAAATATATTCAAGAACTCAAACACAAAGTGGAAAGGCTAAATCAAGACATAACTACTACTACCCCTCAAACTAATTCAAACAACAACACTTCTTCATGGCCAGTAAGTTTTTGACTCATCTCCTTTTCTTGACTCTCTAATACTTTTAAAACATTCAAAGGTGATCAATCGATCGATGATTCTGTATTTTGTTTTCCAGCAAATTGAAGTGGAAACCCTAGAAAAAGGTTTCTTAGTAAATGTATATTCAGAAAGAAGTTGCCCTGGTTTGCTTGTTTCCATATTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTTTCTTGCACCGACACCTTTCGTTTACAAGCATTTGGTGGAGAGGTAATTATTCTTTCATCTACGATTACTAGTCAAATTTTTTCTTTTTATTACAAAAAAAAAAGTGTGTAAAAAATTCATTTCTTTCATGTGTGTTTGAAGAATATAATTAATGAGTTATATCCTGAAAAAAATGGTTCTTGTAGGATGAAGAAACCATGATTAATGCCCAAGTGGTGACAGAGGCAGTTTTTGAAGCTATTAAGAACTGGAGTGAAAGCAAAGAACAAGGCTAATTAATCAAATATATAATATAGTTTAATTAGCTATTATTAATTATTACT</genome_strand>
        <mrna_strand>TGGAAGCAAACAAATTAAAGAGGGGATATTGATATGAGAGAAGAGCTCCTCTCTTATTAGTTATTACATACTTTATTTAAAGAGACTTAGCTTTAGAGCTTGAGGAAGAGAAAAACATTAAATCTCACAACAATATAATGGTATCAAGGGAGCAGAAAAGAGCCTCAGTATTGCATGACAAATTGCAACTTCTTCGATCAATCACTAAATCTCATGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTGAAAGCTCAATCATTGTAGATGCATCAAAATATATTCAAGAACTCAAACACAAAGTGGAAAGGCTAAATCAAGACATAACTACTACTACCCCTCAAACTAATTCAAACAACAACACTTCTTCATGGCCA.................................................................................................CAAATTGAAGTGGAAACCCTAGAAAAAGGTTTCTTAGTAAATGTATATTCAGAAAGAAGTTGCCCTGGTTTGCTTGTTTCCATATTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTTTCTTGCACCGACACCTTTCGTTTACAAGCATTTGGTGGAGAG...............................................................................................................................................GATGAAGAAACCATGATTAATGCCCAAGTGGTGACAGAGGCAGTTTTTGAAGCTATTAAGAACTGGAGTGAAAGCAAAGAACAAGGCTAATTAATCAAATATATAATATAGTTTAATTAGCTATTATTAATTATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282660" ref_strand="+" ref_description="SGN-E282660 [cLER-15-K16]">
      <seq>agaaaagagcctcagtattgcatgacaaattgcaacttcttcgatcaatcactaaatctcatgctcttagtgaaagctcaatcattgtagatgcatcaaaatatattcaagaactcaaacacaaagtggaaaggctaaatcaagacataactactactacccctcaaactaattcaaacaacaacacttcttcatggccacaaattgaagtggaaaccctagaaaaaggtttcttagtgaatgtatattcagaaagaaggtgccctcggttgcttgtttccatattacaagttcttgaagaccttggccttaacgtacttgaagctagggtgtcttgcaccgacacctttcgtttacaagcatttggtggagaggatgaagaaaccatgattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0082G10-u6h23/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0082G10.1" temp_strand="-" temp_description="C06SLm0082G10.1  AC219225.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0082G10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113079" stop="111339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112779" g_stop="112715" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112714" i_stop="112210" i_length="505">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112209" g_stop="112075" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="200" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112074" i_stop="111978" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111977" g_stop="111804" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="374" r_length="174" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111803" i_stop="111661" i_length="143">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111660" g_stop="111639" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="396" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0082G10.1" gen_strand="-" ref_id="SGN-E282660" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0082G10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112779" e_stop="112715"/>
          <exon e_start="112209" e_stop="112075"/>
          <exon e_start="111977" e_stop="111804"/>
          <exon e_start="111660" e_stop="111639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAGCCTCAGTATTGCATGACAAATTGCAACTTCTTCGATCAATCACTAAATCTCATGCTGTAATTTTCTAATCCATTCTACTTATATGTAACCTTCTCTTCTCATTCTTCAACATTTTTTTTTGGGTATAGGGAAAAAGAATTATGAGATGGGGAATCAAACTCTAATTGATTAGGTGAAAGTTCAGACAGTCAATCAACTGAGATACAAAGATTTCTCTGATTCTTCAAAATTAATTTTTCATTGATTTTGTGTTTTTGTGGCAATCAATATACTCTTTTATCTGCTCCGCAACTCAAAGAGAGTAAAAAAGAGAATTAAACATGACATGACATGACATTTATTTGTTCTTAACTCTATATATGTAAACATTCATTTTGTTATACTTTTTTTAGTAGTATTAGATAAATTATTGATGAATATATATACAAGTAGAATATAACCAATTTTGAGGTTTCTAATTTTTTAATTTTGACCCTATGAATTGTAGATTTACATTGCCTCTTCTATTTGTTGCAATTCCCAAGTTCAAAGTGTGACTAATTAATTTGCATTTTCATGCAGCTTAGTGAAAGCTCAATCATTGTAGATGCATCAAAATATATTCAAGAACTCAAACACAAAGTGGAAAGGCTAAATCAAGACATAACTACTACTACCCCTCAAACTAATTCAAACAACAACACTTCTTCATGGCCAGTAAGTTTTTGACTCATCTCCTTTTCTTGACTCTCTAATACTTTTAAAACATTCAAAGGTGATCAATCGATCGATGATTCTGTATTTTGTTTTCCAGCAAATTGAAGTGGAAACCCTAGAAAAAGGTTTCTTAGTAAATGTATATTCAGAAAGAAGTTGCCCTGGTTTGCTTGTTTCCATATTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTTTCTTGCACCGACACCTTTCGTTTACAAGCATTTGGTGGAGAGGTAATTATTCTTTCATCTACGATTACTAGTCAAATTTTTTCTTTTTATTACAAAAAAAAAAGTGTGTAAAAAATTCATTTCTTTCATGTGTGTTTGAAGAATATAATTAATGAGTTATATCCTGAAAAAAATGGTTCTTGTAGGATGAAGAAACCATGATTAATG</genome_strand>
        <mrna_strand>AGAAAAGAGCCTCAGTATTGCATGACAAATTGCAACTTCTTCGATCAATCACTAAATCTCATGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTGAAAGCTCAATCATTGTAGATGCATCAAAATATATTCAAGAACTCAAACACAAAGTGGAAAGGCTAAATCAAGACATAACTACTACTACCCCTCAAACTAATTCAAACAACAACACTTCTTCATGGCCA.................................................................................................CAAATTGAAGTGGAAACCCTAGAAAAAGGTTTCTTAGTGAATGTATATTCAGAAAGAAGGTGCCCTCGGTTGCTTGTTTCCATATTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTGTCTTGCACCGACACCTTTCGTTTACAAGCATTTGGTGGAGAG...............................................................................................................................................GATGAAGAAACCATGATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>26</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4741" PGL_stop="5358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4741" e_stop="5358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4741" e_stop="5358" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4741" stop="5358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4741" stop="5358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4741" stop="5347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4742" stop="5358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4742" stop="5357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4742" stop="5308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAACTCAAAATTTGTCAACGGCTACAGCATATACAACATAAAAGAACAAGAGTTATTTTTGATGGTCTCCTTTATCCTTATTTTTTTCTTTCTTTGAAAATGACTATGAAGCTTAGAAAGCCACAACTCAAACCCAGATCTCAAGACGTATGAACGAACAACCTATTCTTAATGTCTCAATTTAGTTTCTCCTTCACATGGACGATTAAGAAGCACCAACGATGATGTGCTGATAGGAATGAAGATCCATTTGACAAAAAGTCCTACAAATTTCATCACAATGAAATCGATTGCAGTATGAGTGGCAACTTTATTGAATTCTTTGCGATCTGGCTTGTGGCACGGCACCTCTTAACAAGCCTAACGTTGTATTTGGCAAAACCTCTAAGGGGATCGAAAACAGAATCGAATTTTTTTTTAGTTTGCTTTTTGCTATTGTCGTTTTTGTTTAGAGTTAGGCAGTGACCCATATTTTCTTTATTTCTTTATTATTTGTTGAAAGTTTTATTTGTTGTTTTCTCATTATAATTTTACATATCATTTATTTAATGATTTTGTGTGGAAACTTGTTTCAATAAATTTAGATTATTTTATCTTTTGTTCCTATTCATATGAT</gDNA_template>
            <first_frame> A  N  S  K  F  V  N  G  Y  S  I  Y  N  I  K  E  Q  E  L  F  L  M  V  S  F  I  L  I  F  F  F  L  *  K  *  L  *  S  L  E  S  H  N  S  N  P  D  L  K  T  Y  E  R  T  T  Y  S  *  C  L  N  L  V  S  P  S  H  G  R  L  R  S  T  N  D  D  V  L  I  G  M  K  I  H  L  T  K  S  P  T  N  F  I  T  M  K  S  I  A  V  *  V  A  T  L  L  N  S  L  R  S  G  L  W  H  G  T  S  *  Q  A  *  R  C  I  W  Q  N  L  *  G  D  R  K  Q  N  R  I  F  F  *  F  A  F  C  Y  C  R  F  C  L  E  L  G  S  D  P  Y  F  L  Y  F  F  I  I  C  *  K  F  Y  L  L  F  S  H  Y  N  F  T  Y  H  L  F  N  D  F  V  W  K  L  V  S  I  N  L  D  Y  F  I  F  C  S  Y  S  Y  D </first_frame>
            <second_frame>  Q  T  Q  N  L  S  T  A  T  A  Y  T  T  *  K  N  K  S  Y  F  *  W  S  P  L  S  L  F  F  S  F  F  E  N  D  Y  E  A  *  K  A  T  T  Q  T  Q  I  S  R  R  M  N  E  Q  P  I  L  N  V  S  I  *  F  L  L  H  M  D  D  *  E  A  P  T  M  M  C  *  *  E  *  R  S  I  *  Q  K  V  L  Q  I  S  S  Q  *  N  R  L  Q  Y  E  W  Q  L  Y  *  I  L  C  D  L  A  C  G  T  A  P  L  N  K  P  N  V  V  F  G  K  T  S  K  G  I  E  N  R  I  E  F  F  F  S  L  L  F  A  I  V  V  F  V  *  S  *  A  V  T  H  I  F  F  I  S  L  L  F  V  E  S  F  I  C  C  F  L  I  I  I  L  H  I  I  Y  L  M  I  L  C  G  N  L  F  Q  *  I  *  I  I  L  S  F  V  P  I  H  M   </second_frame>
            <third_frame>   K  L  K  I  C  Q  R  L  Q  H  I  Q  H  K  R  T  R  V  I  F  D  G  L  L  Y  P  Y  F  F  L  S  L  K  M  T  M  K  L  R  K  P  Q  L  K  P  R  S  Q  D  V  *  T  N  N  L  F  L  M  S  Q  F  S  F  S  F  T  W  T  I  K  K  H  Q  R  *  C  A  D  R  N  E  D  P  F  D  K  K  S  Y  K  F  H  H  N  E  I  D  C  S  M  S  G  N  F  I  E  F  F  A  I  W  L  V  A  R  H  L  L  T  S  L  T  L  Y  L  A  K  P  L  R  G  S  K  T  E  S  N  F  F  L  V  C  F  L  L  L  S  F  L  F  R  V  R  Q  *  P  I  F  S  L  F  L  Y  Y  L  L  K  V  L  F  V  V  F  S  L  *  F  Y  I  S  F  I  *  *  F  C  V  E  T  C  F  N  K  F  R  L  F  Y  L  L  F  L  F  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4968" stop="5207"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CADRNEDPFDKKSYKFHHNEIDCSMSGNFIEFFAIWLVARHLLTSLTLYLAKPLRGSKTESNFFLVCFLLLSFLFRVRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17913" PGL_stop="16329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17157" e_stop="16329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="17157" e_stop="16329" e_length="829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17157" stop="16329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17156" stop="16385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17156" stop="16438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCAACGTGGCAACCTGTTAATTGTCAATTTCAATTTTAATTTATCTGTCTACCTTTCACTTTTTGTCAGTTTTAAAAAGAATATGTTATCATTTTATTCCGTAACTCTTTAATTTTCACTTTTTCACATAAATATATTTAAAATTAAAAGATACTCATTTTAGTTCATTTTGCATATATTTAGATTAAGATCATAATATTTTGCCTTTTTTATTTTGTTAAGAAACAAGTCAAAATCAGACAAACAAATTAAAATAGATGACACATATAATTACTCTGATAGCTTAAGGATAAATGAGGGACCTAAGACACAACCAACCATAAAATTCGCTGTTACTATAGTTACAATCAAATTGGACTTGGAATCTATCCAACTGATCGATCCACATCATCATTAGCCTAATCCTATGAGTTGCCTTTACCACAGGCAAGGCACAAAATCCCCATAATTAGCTGCCTTAATATGACATAGATTGATTAATATATTACTAGCATATACTTAATGACAAATTAAACCAAAGTCCCAAATCATGGCAAAGAGTCAAATAAATGAGCACCATATATAATTGAGCATTTATCTGATAATGATGAAGTGTGTGACTATCTCAAAATCTCTTTCTATTATGATAATGTGTATGATTATCTTATCTAAAAGCTTAAATATTAGAGAAAACATAATTTTATTATTTAATTGTATACTCAACAATATCAAATAAGCCAAAATAACTCTGTTTTATTCAGGTTCTTGGACAAAGCAGCAATGAAACATGACAATGATACAGGTTCAAGGCTACCATGTACAGTGACTCAAGTGGAAGGAGCAAAGT</gDNA_template>
            <first_frame> V  S  T  W  Q  P  V  N  C  Q  F  Q  F  *  F  I  C  L  P  F  T  F  C  Q  F  *  K  E  Y  V  I  I  L  F  R  N  S  L  I  F  T  F  S  H  K  Y  I  *  N  *  K  I  L  I  L  V  H  F  A  Y  I  *  I  K  I  I  I  F  C  L  F  Y  F  V  K  K  Q  V  K  I  R  Q  T  N  *  N  R  *  H  I  *  L  L  *  *  L  K  D  K  *  G  T  *  D  T  T  N  H  K  I  R  C  Y  Y  S  Y  N  Q  I  G  L  G  I  Y  P  T  D  R  S  T  S  S  L  A  *  S  Y  E  L  P  L  P  Q  A  R  H  K  I  P  I  I  S  C  L  N  M  T  *  I  D  *  Y  I  T  S  I  Y  L  M  T  N  *  T  K  V  P  N  H  G  K  E  S  N  K  *  A  P  Y  I  I  E  H  L  S  D  N  D  E  V  C  D  Y  L  K  I  S  F  Y  Y  D  N  V  Y  D  Y  L  I  *  K  L  K  Y  *  R  K  H  N  F  I  I  *  L  Y  T  Q  Q  Y  Q  I  S  Q  N  N  S  V  L  F  R  F  L  D  K  A  A  M  K  H  D  N  D  T  G  S  R  L  P  C  T  V  T  Q  V  E  G  A  K  </first_frame>
            <second_frame>  F  Q  R  G  N  L  L  I  V  N  F  N  F  N  L  S  V  Y  L  S  L  F  V  S  F  K  K  N  M  L  S  F  Y  S  V  T  L  *  F  S  L  F  H  I  N  I  F  K  I  K  R  Y  S  F  *  F  I  L  H  I  F  R  L  R  S  *  Y  F  A  F  F  I  L  L  R  N  K  S  K  S  D  K  Q  I  K  I  D  D  T  Y  N  Y  S  D  S  L  R  I  N  E  G  P  K  T  Q  P  T  I  K  F  A  V  T  I  V  T  I  K  L  D  L  E  S  I  Q  L  I  D  P  H  H  H  *  P  N  P  M  S  C  L  Y  H  R  Q  G  T  K  S  P  *  L  A  A  L  I  *  H  R  L  I  N  I  L  L  A  Y  T  *  *  Q  I  K  P  K  S  Q  I  M  A  K  S  Q  I  N  E  H  H  I  *  L  S  I  Y  L  I  M  M  K  C  V  T  I  S  K  S  L  S  I  M  I  M  C  M  I  I  L  S  K  S  L  N  I  R  E  N  I  I  L  L  F  N  C  I  L  N  N  I  K  *  A  K  I  T  L  F  Y  S  G  S  W  T  K  Q  Q  *  N  M  T  M  I  Q  V  Q  G  Y  H  V  Q  *  L  K  W  K  E  Q  S </second_frame>
            <third_frame>   F  N  V  A  T  C  *  L  S  I  S  I  L  I  Y  L  S  T  F  H  F  L  S  V  L  K  R  I  C  Y  H  F  I  P  *  L  F  N  F  H  F  F  T  *  I  Y  L  K  L  K  D  T  H  F  S  S  F  C  I  Y  L  D  *  D  H  N  I  L  P  F  L  F  C  *  E  T  S  Q  N  Q  T  N  K  L  K  *  M  T  H  I  I  T  L  I  A  *  G  *  M  R  D  L  R  H  N  Q  P  *  N  S  L  L  L  *  L  Q  S  N  W  T  W  N  L  S  N  *  S  I  H  I  I  I  S  L  I  L  *  V  A  F  T  T  G  K  A  Q  N  P  H  N  *  L  P  *  Y  D  I  D  *  L  I  Y  Y  *  H  I  L  N  D  K  L  N  Q  S  P  K  S  W  Q  R  V  K  *  M  S  T  I  Y  N  *  A  F  I  *  *  *  *  S  V  *  L  S  Q  N  L  F  L  L  *  *  C  V  *  L  S  Y  L  K  A  *  I  L  E  K  T  *  F  Y  Y  L  I  V  Y  S  T  I  S  N  K  P  K  *  L  C  F  I  Q  V  L  G  Q  S  S  N  E  T  *  Q  *  Y  R  F  K  A  T  M  Y  S  D  S  S  G  R  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16958" stop="16758"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFAFFILLRNKSKSDKQIKIDDTYNYSDSLRINEGPKTQPTIKFAVTIVTIKLDLESIQLIDPHHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17913" e_stop="17538"/>
            <exon e_start="16414" e_stop="16329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="17913" e_stop="17538" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17537" i_stop="16415" i_length="1123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16414" e_stop="16329" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17913" stop="17538"/>
              <exon start="16414" stop="16329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGATTTTAATCCCCATGAAAAAAAACTTAAAGTTTCCTTCTTCAATTGGTGGATGTTTAGTACATTTGGTGGTGCTTTACTTGCCACAATTGGACTTGTTTACATTCAAGAAAACATGAGTTGGGGATTAGGTTATGGAATTCCAACTGTTGGATTAATATTTTCACTAATCATTTTCTATATTGGGACACCAACTTACAGGCATAAAGTTAGAAAGTCTCAACATCCTGCTAAGGATCTATTTCGTGTTCCTATTGTTGCATTTGCCAACAGGAAAATGGAACTACCTAATGACTCTTCACAACTTCATGAACTTGATATGCAATATTATTTCACTACGGGGAAACGACAAGTCCATCACACTCCAGTATTTAG : GTTCTTGGACAAAGCAGCAATGAAACATGACAATGATACAGGTTCAAGGCTACCATGTACAGTGACTCAAGTGGAAGGAGCAAAGT</gDNA_template>
            <first_frame> T  I  L  I  P  M  K  K  N  L  K  F  P  S  S  I  G  G  C  L  V  H  L  V  V  L  Y  L  P  Q  L  D  L  F  T  F  K  K  T  *  V  G  D  *  V  M  E  F  Q  L  L  D  *  Y  F  H  *  S  F  S  I  L  G  H  Q  L  T  G  I  K  L  E  S  L  N  I  L  L  R  I  Y  F  V  F  L  L  L  H  L  P  T  G  K  W  N  Y  L  M  T  L  H  N  F  M  N  L  I  C  N  I  I  S  L  R  G  N  D  K  S  I  T  L  Q  Y  L   : G  S  W  T  K  Q  Q  *  N  M  T  M  I  Q  V  Q  G  Y  H  V  Q  *  L  K  W  K  E  Q  S </first_frame>
            <second_frame>  R  F  *  S  P  *  K  K  T  *  S  F  L  L  Q  L  V  D  V  *  Y  I  W  W  C  F  T  C  H  N  W  T  C  L  H  S  R  K  H  E  L  G  I  R  L  W  N  S  N  C  W  I  N  I  F  T  N  H  F  L  Y  W  D  T  N  L  Q  A  *  S  *  K  V  S  T  S  C  *  G  S  I  S  C  S  Y  C  C  I  C  Q  Q  E  N  G  T  T  *  *  L  F  T  T  S  *  T  *  Y  A  I  L  F  H  Y  G  E  T  T  S  P  S  H  S  S  I  *  :  V  L  G  Q  S  S  N  E  T  *  Q  *  Y  R  F  K  A  T  M  Y  S  D  S  S  G  R  S  K   </second_frame>
            <third_frame>   D  F  N  P  H  E  K  K  L  K  V  S  F  F  N  W  W  M  F  S  T  F  G  G  A  L  L  A  T  I  G  L  V  Y  I  Q  E  N  M  S  W  G  L  G  Y  G  I  P  T  V  G  L  I  F  S  L  I  I  F  Y  I  G  T  P  T  Y  R  H  K  V  R  K  S  Q  H  P  A  K  D  L  F  R  V  P  I  V  A  F  A  N  R  K  M  E  L  P  N  D  S  S  Q  L  H  E  L  D  M  Q  Y  Y  F  T  T  G  K  R  Q  V  H  H  T  P  V  F  R :   F  L  D  K  A  A  M  K  H  D  N  D  T  G  S  R  L  P  C  T  V  T  Q  V  E  G  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17911" stop="17538"/>
                    <exon start="16414" stop="16330"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFNPHEKKLKVSFFNWWMFSTFGGALLATIGLVYIQENMSWGLGYGIPTVGLIFSLIIFYIGTPTYRHKVRKSQHPAKDLFRVPIVAFANRKMELPNDSSQLHELDMQYYFTTGKRQVHHTPVFRFLDKAAMKHDNDTGSRLPCTVTQVEGAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="27659" PGL_stop="27212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27659" e_stop="27212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="27659" e_stop="27212" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27659" stop="27338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27659" stop="27354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27658" stop="27212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTTCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATCGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATCTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACAAAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAACGGAGAGTGGTGAGCGAGATTTTTGGGAGAGAGATGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTGGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  K  Y  M  F  F  S  L  Y  T  K  T  *  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  R  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  H  F  I  Q  N  R  N  K  I  I  H  F  C  V  *  S  E  R  G  E  R  E  R  R  V  V  S  E  I  F  G  R  E  M  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  G  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  N  I  C  F  S  R  F  I  Q  K  H  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  T  L  Y  K  T  E  T  K  L  Y  T  F  V  Y  K  A  R  E  A  S  E  N  G  E  W  *  A  R  F  L  G  E  R  C  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  I  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  S  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  S  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  T  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  W  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0082G10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="46123" PGL_stop="46625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46123" e_stop="46625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="46123" e_stop="46625" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46123" stop="46625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46123" stop="46531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGCCGCCCCTCTTTCTCTCCTTCACTGTTGCCGTCTCAGGCAAGACGCCGCCGGAGAACCCTAAAACCTACCCATCATTCTTCAATCTCTCTTCCTCTCCAGCCAGCATGAGGAGGACGAAGCCAGCTGCAGAGAAGAAACCAGCAGCGACAAGGCAACCCCCGGCCTGCGTACTGCAGCGAAGCCAGCAACCAAACGACTCCAACAAAACCCCAAACCCCATTTCTTTCTTCTCCGACCACACCACCCCCAAAACTCTTTTGTTTCTTTCTCGTTTTTGCAGCTAGCAGCAACCCCGGCGGGGAGCTTTAAGCTCCGATGAACCGGAGCCAAATAAGAAAAAAATATAAATATAAAAATGAAACAGTCCCTTTCCCTCTCTCCCCTTCACGATTTTGATTTATTTTGTAGGTATTCCGGCCAGCTCGAGCAACCTCGGTGAGCTTCGAAGCTGTGGCAAACAAATCAAAACCCTCTATCAAAATGGAGCTAAGGAAGCCA</gDNA_template>
            <first_frame> P  A  A  P  L  S  L  L  H  C  C  R  L  R  Q  D  A  A  G  E  P  *  N  L  P  I  I  L  Q  S  L  F  L  S  S  Q  H  E  E  D  E  A  S  C  R  E  E  T  S  S  D  K  A  T  P  G  L  R  T  A  A  K  P  A  T  K  R  L  Q  Q  N  P  K  P  H  F  F  L  L  R  P  H  H  P  Q  N  S  F  V  S  F  S  F  L  Q  L  A  A  T  P  A  G  S  F  K  L  R  *  T  G  A  K  *  E  K  N  I  N  I  K  M  K  Q  S  L  S  L  S  P  L  H  D  F  D  L  F  C  R  Y  S  G  Q  L  E  Q  P  R  *  A  S  K  L  W  Q  T  N  Q  N  P  L  S  K  W  S  *  G  S   </first_frame>
            <second_frame>  Q  P  P  L  F  L  S  F  T  V  A  V  S  G  K  T  P  P  E  N  P  K  T  Y  P  S  F  F  N  L  S  S  S  P  A  S  M  R  R  T  K  P  A  A  E  K  K  P  A  A  T  R  Q  P  P  A  C  V  L  Q  R  S  Q  Q  P  N  D  S  N  K  T  P  N  P  I  S  F  F  S  D  H  T  T  P  K  T  L  L  F  L  S  R  F  C  S  *  Q  Q  P  R  R  G  A  L  S  S  D  E  P  E  P  N  K  K  K  I  *  I  *  K  *  N  S  P  F  P  S  L  P  F  T  I  L  I  Y  F  V  G  I  P  A  S  S  S  N  L  G  E  L  R  S  C  G  K  Q  I  K  T  L  Y  Q  N  G  A  K  E  A  </second_frame>
            <third_frame>   S  R  P  S  F  S  P  S  L  L  P  S  Q  A  R  R  R  R  R  T  L  K  P  T  H  H  S  S  I  S  L  P  L  Q  P  A  *  G  G  R  S  Q  L  Q  R  R  N  Q  Q  R  Q  G  N  P  R  P  A  Y  C  S  E  A  S  N  Q  T  T  P  T  K  P  Q  T  P  F  L  S  S  P  T  T  P  P  P  K  L  F  C  F  F  L  V  F  A  A  S  S  N  P  G  G  E  L  *  A  P  M  N  R  S  Q  I  R  K  K  Y  K  Y  K  N  E  T  V  P  F  P  L  S  P  S  R  F  *  F  I  L  *  V  F  R  P  A  R  A  T  S  V  S  F  E  A  V  A  N  K  S  K  P  S  I  K  M  E  L  R  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46124" stop="46411"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPPLFLSFTVAVSGKTPPENPKTYPSFFNLSSSPASMRRTKPAAEKKPAATRQPPACVLQRSQQPNDSNKTPNPISFFSDHTTPKTLLFLSRFCS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46189" stop="46446"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLPIILQSLFLSSQHEEDEASCREETSSDKATPGLRTAAKPATKRLQQNPKPHFFLLRPHHPQNSFVSFSFLQLAATPAGSFKLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46236" stop="46436"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGRSQLQRRNQQRQGNPRPAYCSEASNQTTPTKPQTPFLSSPTTPPPKLFCFFLVFAASSNPGGEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="64114" PGL_stop="64320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64114" e_stop="64320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="64114" e_stop="64320" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64114" stop="64320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCATATTGAGTGTTGTATTCGTGACTACACAATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCT</gDNA_template>
            <first_frame> K  N  H  F  E  S  K  V  R  Y  S  I  D  Y  I  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  I  L  S  V  V  F  V  T  T  Q  C  K  I  P  Y  Y  S  N  I  S  C  S  S </first_frame>
            <second_frame>  K  T  I  L  R  A  K  *  G  I  P  *  T  I  *  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  Y  *  V  L  Y  S  *  L  H  N  V  K  F  L  T  I  V  I  S  V  A  P   </second_frame>
            <third_frame>   K  P  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  I  E  C  C  I  R  D  Y  T  M  *  N  S  L  L  *  *  Y  Q  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0082G10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="65505" PGL_stop="69180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65505" e_stop="65827"/>
            <exon e_start="69031" e_stop="69180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.947"/>
          <exon-only e_score="0.860"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="65505" e_stop="65827" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65828" i_stop="69030" i_length="3203"/>
          </intron>
          <exon e_serial="2" e_score="0.860">
            <gDNA_exon_boundary e_start="69031" e_stop="69180" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65505" stop="65827"/>
              <exon start="69031" stop="69180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGTTGGTTGATATTGGTACAATTTGTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCTATACTGGACTATGACCTCTACTTGTGTTGATATGGTAAATGTTGTTGAGAGCGATGGCTCTTCAACATTATG : GCTCCTCTTGGCGCATGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCATTTTATTTCCATTATATTTACCATATATACTTTTGTGCTTGTCCGTGTTTTCCCAACAAGTTTTTGATTGGTTTT</gDNA_template>
            <first_frame> D  F  G  T  L  S  M  G  N  E  T  V  S  R  L  V  D  I  G  T  I  C  L  E  T  S  V  G  T  K  L  V  L  N  N  V  K  H  A  P  D  V  R  L  H  L  I  S  V  G  V  L  D  D  E  G  Y  V  S  T  N  G  D  G  K  W  K  L  I  K  G  S  L  V  V  A  R  G  N  K  R  R  G  L  Y  W  T  M  T  S  T  C  V  D  M  V  N  V  V  E  S  D  G  S  S  T  L  W :   L  L  L  A  H  G  F  F  P  Y  S  E  G  F  P  R  K  I  L  G  V  V  I  F  H  F  I  S  I  I  F  T  I  Y  T  F  V  L  V  R  V  F  P  T  S  F  *  L  V   </first_frame>
            <second_frame>  I  L  E  P  *  V  W  V  M  R  L  F  L  G  W  L  I  L  V  Q  F  V  W  K  L  V  L  E  L  N  *  F  *  T  M  *  N  M  L  L  M  F  V  C  T  *  F  L  L  V  F  *  M  M  K  D  M  L  V  P  T  V  M  E  N  G  S  S  L  R  V  P  W  L  W  L  V  V  T  N  V  V  V  Y  T  G  L  *  P  L  L  V  L  I  W  *  M  L  L  R  A  M  A  L  Q  H  Y   : G  S  S  W  R  M  V  F  S  L  I  Q  K  G  F  H  V  K  F  L  V  S  L  F  S  I  L  F  P  L  Y  L  P  Y  I  L  L  C  L  S  V  F  S  Q  Q  V  F  D  W  F  </second_frame>
            <third_frame>   F  W  N  L  E  Y  G  *  *  D  C  F  *  V  G  *  Y  W  Y  N  L  F  G  N  *  C  W  N  *  T  S  F  E  Q  C  E  T  C  S  *  C  S  S  A  P  N  F  C  W  C  F  R  *  *  R  I  C  *  Y  Q  R  *  W  K  M  E  A  H  *  G  F  L  G  C  G  S  W  *  Q  T  S  W  S  I  L  D  Y  D  L  Y  L  C  *  Y  G  K  C  C  *  E  R  W  L  F  N  I  M  :  A  P  L  G  A  W  F  F  P  L  F  R  R  V  S  T  *  N  S  W  C  R  Y  F  P  F  Y  F  H  Y  I  Y  H  I  Y  F  C  A  C  P  C  F  P  N  K  F  L  I  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65505" stop="65827"/>
                    <exon start="69031" stop="69172"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFGTLSMGNETVSRLVDIGTICLETSVGTKLVLNNVKHAPDVRLHLISVGVLDDEGYVSTNGDGKWKLIKGSLVVARGNKRRGLYWTMTSTCVDMVNVVESDGSSTLWLLLAHGFFPYSEGFPRKILGVVIFHFISIIFTIYTFVLVRVFPTSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="79797" PGL_stop="83280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79797" e_stop="80128"/>
            <exon e_start="82136" e_stop="82312"/>
            <exon e_start="82817" e_stop="83280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79797" e_stop="80128" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80129" i_stop="82135" i_length="2007"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82136" e_stop="82312" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="82313" i_stop="82816" i_length="504"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="82817" e_stop="83280" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79797" stop="80128"/>
              <exon start="82136" stop="82312"/>
              <exon start="82817" stop="83127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79798" stop="80128"/>
              <exon start="82136" stop="82312"/>
              <exon start="82817" stop="82932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79982" stop="80128"/>
              <exon start="82136" stop="82312"/>
              <exon start="82817" stop="83280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543911" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCATCATCTCTAAGTCCACTTCTCTTATTTTAAATCGATCATCGTCTCTTCTTCATTGATCATTTGAGTTCAGTAATTTCTTCTTCGAATATTGATCAGAAAAAAATTAATCGAAGCGCACAAATAAATATGGATTGTTCTATATGTAGCGCGATGCCATTTATTTTAAGGCCACCAAGAAATACAATATGTGCAGCTTGTTACGAAGGAGCTAGAACAATAATTACGTTGACTACCAACAAGGTTGATCATGTTGAAAATACAAAAGGAAGTGATAATAAAACAATAACTGGACTTCTTTCTGCTTCTTCATCCAATCCATCTATTAAG : GGATTTGGAAATGCATTGAAATGGGTGAAAGAAATGAAGGAGATGGAAGAGGAATCAAAGGAGAAGCTGAATTATCTTAGTGGTTTTGTTGTTGCCTTAAGAGATCATATTCATACTGATATTTTAATTAAACCTGGCAATGATGCTCCTTCTATACCAGCACATAGAGCTCTTCTG : GCAGCAAGATCTGACATATTCAAAAACATACTGGACTCAGATGGATGTAAAGCTCCACCAAGTAACAACACGATAACGTTGTCTGAACTAAACTACGATGAATTAGAGTGTCTATTAGAGTTCCTGTACAGTGGAGATTTGGCTAAAGAGAAGGTGGAAAAACATGTATATTCCTTGTCAATTGCAGCAGATAAGTATGAGATTCCCTTCTTGCAGAAATTTTGTGAGAATCAAATGTTGGGATCATTGAACACATCGAATGCTCTCGACGTTTTAGAGATATCTGATACTTGTTCTAATACGTCGTTAAAGGAGACAGCGTTAAACTTCATTGTTAAAAACATGGAGGATATTGTGTTTACTGCTAGATTTGATGCATTTGCACTCAAGAATCCTCATTTAACTGTACAAATTACTAGGGCTTCTTTTATAGACATTAAAAATAGAAGGCTTACTGTTTGATT</gDNA_template>
            <first_frame> R  H  H  L  *  V  H  F  S  Y  F  K  S  I  I  V  S  S  S  L  I  I  *  V  Q  *  F  L  L  R  I  L  I  R  K  K  L  I  E  A  H  K  *  I  W  I  V  L  Y  V  A  R  C  H  L  F  *  G  H  Q  E  I  Q  Y  V  Q  L  V  T  K  E  L  E  Q  *  L  R  *  L  P  T  R  L  I  M  L  K  I  Q  K  E  V  I  I  K  Q  *  L  D  F  F  L  L  L  H  P  I  H  L  L  R :   D  L  E  M  H  *  N  G  *  K  K  *  R  R  W  K  R  N  Q  R  R  S  *  I  I  L  V  V  L  L  L  P  *  E  I  I  F  I  L  I  F  *  L  N  L  A  M  M  L  L  L  Y  Q  H  I  E  L  F  W :   Q  Q  D  L  T  Y  S  K  T  Y  W  T  Q  M  D  V  K  L  H  Q  V  T  T  R  *  R  C  L  N  *  T  T  M  N  *  S  V  Y  *  S  S  C  T  V  E  I  W  L  K  R  R  W  K  N  M  Y  I  P  C  Q  L  Q  Q  I  S  M  R  F  P  S  C  R  N  F  V  R  I  K  C  W  D  H  *  T  H  R  M  L  S  T  F  *  R  Y  L  I  L  V  L  I  R  R  *  R  R  Q  R  *  T  S  L  L  K  T  W  R  I  L  C  L  L  L  D  L  M  H  L  H  S  R  I  L  I  *  L  Y  K  L  L  G  L  L  L  *  T  L  K  I  E  G  L  L  F  D  </first_frame>
            <second_frame>  A  I  I  S  K  S  T  S  L  I  L  N  R  S  S  S  L  L  H  *  S  F  E  F  S  N  F  F  F  E  Y  *  S  E  K  N  *  S  K  R  T  N  K  Y  G  L  F  Y  M  *  R  D  A  I  Y  F  K  A  T  K  K  Y  N  M  C  S  L  L  R  R  S  *  N  N  N  Y  V  D  Y  Q  Q  G  *  S  C  *  K  Y  K  R  K  *  *  *  N  N  N  W  T  S  F  C  F  F  I  Q  S  I  Y  *   : G  I  W  K  C  I  E  M  G  E  R  N  E  G  D  G  R  G  I  K  G  E  A  E  L  S  *  W  F  C  C  C  L  K  R  S  Y  S  Y  *  Y  F  N  *  T  W  Q  *  C  S  F  Y  T  S  T  *  S  S  S   : G  S  K  I  *  H  I  Q  K  H  T  G  L  R  W  M  *  S  S  T  K  *  Q  H  D  N  V  V  *  T  K  L  R  *  I  R  V  S  I  R  V  P  V  Q  W  R  F  G  *  R  E  G  G  K  T  C  I  F  L  V  N  C  S  R  *  V  *  D  S  L  L  A  E  I  L  *  E  S  N  V  G  I  I  E  H  I  E  C  S  R  R  F  R  D  I  *  Y  L  F  *  Y  V  V  K  G  D  S  V  K  L  H  C  *  K  H  G  G  Y  C  V  Y  C  *  I  *  C  I  C  T  Q  E  S  S  F  N  C  T  N  Y  *  G  F  F  Y  R  H  *  K  *  K  A  Y  C  L  I </second_frame>
            <third_frame>   P  S  S  L  S  P  L  L  L  F  *  I  D  H  R  L  F  F  I  D  H  L  S  S  V  I  S  S  S  N  I  D  Q  K  K  I  N  R  S  A  Q  I  N  M  D  C  S  I  C  S  A  M  P  F  I  L  R  P  P  R  N  T  I  C  A  A  C  Y  E  G  A  R  T  I  I  T  L  T  T  N  K  V  D  H  V  E  N  T  K  G  S  D  N  K  T  I  T  G  L  L  S  A  S  S  S  N  P  S  I  K  :  G  F  G  N  A  L  K  W  V  K  E  M  K  E  M  E  E  E  S  K  E  K  L  N  Y  L  S  G  F  V  V  A  L  R  D  H  I  H  T  D  I  L  I  K  P  G  N  D  A  P  S  I  P  A  H  R  A  L  L  :  A  A  R  S  D  I  F  K  N  I  L  D  S  D  G  C  K  A  P  P  S  N  N  T  I  T  L  S  E  L  N  Y  D  E  L  E  C  L  L  E  F  L  Y  S  G  D  L  A  K  E  K  V  E  K  H  V  Y  S  L  S  I  A  A  D  K  Y  E  I  P  F  L  Q  K  F  C  E  N  Q  M  L  G  S  L  N  T  S  N  A  L  D  V  L  E  I  S  D  T  C  S  N  T  S  L  K  E  T  A  L  N  F  I  V  K  N  M  E  D  I  V  F  T  A  R  F  D  A  F  A  L  K  N  P  H  L  T  V  Q  I  T  R  A  S  F  I  D  I  K  N  R  R  L  T  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79832" stop="80128"/>
                    <exon start="82136" stop="82312"/>
                    <exon start="82817" stop="83278"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDHRLFFIDHLSSVISSSNIDQKKINRSAQINMDCSICSAMPFILRPPRNTICAACYEGARTIITLTTNKVDHVENTKGSDNKTITGLLSASSSNPSIKGFGNALKWVKEMKEMEEESKEKLNYLSGFVVALRDHIHTDILIKPGNDAPSIPAHRALLAARSDIFKNILDSDGCKAPPSNNTITLSELNYDELECLLEFLYSGDLAKEKVEKHVYSLSIAADKYEIPFLQKFCENQMLGSLNTSNALDVLEISDTCSNTSLKETALNFIVKNMEDIVFTARFDAFALKNPHLTVQITRASFIDIKNRRLTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="84003" PGL_stop="90062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84003" e_stop="84145"/>
            <exon e_start="89886" e_stop="90062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.958"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="84003" e_stop="84145" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84146" i_stop="89885" i_length="5740"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="89886" e_stop="90062" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84003" stop="84145"/>
              <exon start="89886" stop="90062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCACCCCCAACCGAACCTCCACAACTACAACCTGAATAAACATCAACCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTAC : ATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATTACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTTCGCAAAA</gDNA_template>
            <first_frame> Y  H  P  Q  P  N  L  H  N  Y  N  L  N  K  H  Q  P  N  L  T  T  H  S  L  H  R  T  *  L  N  K  N  I  *  T  N  Y  I  S  S  T  T  T  L  *  Q  I  T :   Y  P  Q  H  Q  H  L  N  K  L  D  I  L  N  S  N  T  S  K  N  L  H  I  L  N  N  T  L  Q  Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  Y  I  L  N  N  K  L  S  I  Q  Q  S  Q  V  S  Q   </first_frame>
            <second_frame>  T  T  P  N  R  T  S  T  T  T  T  *  I  N  I  N  P  T  *  Q  L  T  V  Y  I  E  R  N  S  T  K  T  F  R  Q  I  T  Y  P  P  Q  Q  H  F  N  K  L   : H  I  L  N  I  N  T  *  T  N  *  I  S  S  I  A  T  L  P  K  I  Y  I  S  S  I  T  H  F  N  K  L  H  I  L  N  N  N  T  S  T  N  Y  I  S  S  I  T  S  S  V  F  N  N  H  K  F  R  K  </second_frame>
            <third_frame>   P  P  P  T  E  P  P  Q  L  Q  P  E  *  T  S  T  Q  P  N  N  S  Q  F  T  *  N  V  T  Q  Q  K  H  L  D  K  L  H  I  L  H  N  N  T  L  T  N  Y  :  I  S  S  T  S  T  L  K  Q  I  R  Y  P  Q  *  Q  H  F  Q  K  F  T  Y  P  Q  *  H  T  S  T  N  Y  I  S  S  T  T  T  L  Q  Q  I  I  Y  P  Q  *  Q  A  Q  Y  S  T  I  T  S  F  A  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0082G10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="90688" PGL_stop="90001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90688" e_stop="90001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="90688" e_stop="90001" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90688" stop="90001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTGATATATGTTTGGGAGTAACGGAATTGGTGATGGGTTGACTTGTCCACATTGATTAATTCTAATGATGAAATAAAAGGGATAACAAAAGGCGATGTGATTAATTATTTATGTGTGATGTGTTGAGAAAAGTTTGATGGCTTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTGTGAACTGTGCAATGTTATGAAAATGGTCATCTCCTCATTATTTGTGTGAACATGTCATTGCATTATTCTGAGACATGGTTGTGAAAGTGTTATGTGCATTGAGAAAGAATGATAACTTAAAGAGGATGTACCATTTCGAGGGACGTATCGCACGCCGCGATGGATACTATATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGCGCGCCGCGATGGTTACTGTTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGGACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACATGCATCATTATACTTGACATTGCATTCCATTACATTGCACATACTTATCATTAGTGAACTTGATATTGTGTTTTGCTGATCTAGTGATTGCCTTTTTGCGAAACTTGTGATTGTTGAATACTGAGCTTGTTATTGAGGATATATAATTTGTTGAA</gDNA_template>
            <first_frame> L  V  I  Y  V  W  E  *  R  N  W  *  W  V  D  L  S  T  L  I  N  S  N  D  E  I  K  G  I  T  K  G  D  V  I  N  Y  L  C  V  M  C  *  E  K  F  D  G  L  L  N  H  C  *  C  D  F  M  F  V  W  L  *  T  V  Q  C  Y  E  N  G  H  L  L  I  I  C  V  N  M  S  L  H  Y  S  E  T  W  L  *  K  C  Y  V  H  *  E  R  M  I  T  *  R  G  C  T  I  S  R  D  V  S  H  A  A  M  D  T  I  F  R  G  T  Y  R  A  P  R  W  I  L  Y  F  E  G  R  I  A  R  R  D  G  Y  C  Y  R  G  S  C  R  A  P  R  Q  M  H  G  Q  I  C  P  P  W  V  P  D  *  E  T  A  G  V  Y  H  *  V  R  H  A  S  L  Y  L  T  L  H  S  I  T  L  H  I  L  I  I  S  E  L  D  I  V  F  C  *  S  S  D  C  L  F  A  K  L  V  I  V  E  Y  *  A  C  Y  *  G  Y  I  I  C  *  </first_frame>
            <second_frame>  L  *  Y  M  F  G  S  N  G  I  G  D  G  L  T  C  P  H  *  L  I  L  M  M  K  *  K  G  *  Q  K  A  M  *  L  I  I  Y  V  *  C  V  E  K  S  L  M  A  C  *  I  I  V  D  V  I  S  C  L  C  G  C  E  L  C  N  V  M  K  M  V  I  S  S  L  F  V  *  T  C  H  C  I  I  L  R  H  G  C  E  S  V  M  C  I  E  K  E  *  *  L  K  E  D  V  P  F  R  G  T  Y  R  T  P  R  W  I  L  Y  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  R  A  A  M  V  T  V  I  E  G  R  V  V  R  R  D  R  C  M  D  R  Y  V  P  H  G  S  R  T  E  R  Q  R  V  C  I  T  R  S  D  M  H  H  Y  T  *  H  C  I  P  L  H  C  T  Y  L  S  L  V  N  L  I  L  C  F  A  D  L  V  I  A  F  L  R  N  L  *  L  L  N  T  E  L  V  I  E  D  I  *  F  V  E </second_frame>
            <third_frame>   C  D  I  C  L  G  V  T  E  L  V  M  G  *  L  V  H  I  D  *  F  *  *  *  N  K  R  D  N  K  R  R  C  D  *  L  F  M  C  D  V  L  R  K  V  *  W  L  V  E  S  L  L  M  *  F  H  V  C  V  V  V  N  C  A  M  L  *  K  W  S  S  P  H  Y  L  C  E  H  V  I  A  L  F  *  D  M  V  V  K  V  L  C  A  L  R  K  N  D  N  L  K  R  M  Y  H  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  R  A  A  M  D  T  I  F  R  G  T  Y  R  A  P  R  W  L  L  L  S  R  V  V  S  C  A  A  T  D  A  W  T  D  M  S  P  M  G  P  G  L  R  D  S  G  C  V  S  L  G  Q  T  C  I  I  I  L  D  I  A  F  H  Y  I  A  H  T  Y  H  *  *  T  *  Y  C  V  L  L  I  *  *  L  P  F  C  E  T  C  D  C  *  I  L  S  L  L  L  R  I  Y  N  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90431" stop="90102"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMVVKVLCALRKNDNLKRMYHFEGRIARRDGYYISRDVSRAAMDTIFRGTYRAPRWLLLSRVVSCAATDAWTDMSPMGPGLRDSGCVSLGQTCIIILDIAFHYIAHTYH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90387" stop="90139"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKEDVPFRGTYRTPRWILYFEGRIARRDGYYISRDVSRAAMVTVIEGRVVRRDRCMDRYVPHGSRTERQRVCITRSDMHHYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="112932" PGL_stop="111369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112932" e_stop="112715"/>
            <exon e_start="112209" e_stop="112075"/>
            <exon e_start="111977" e_stop="111804"/>
            <exon e_start="111660" e_stop="111369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112932" e_stop="112715" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.969">
            <gDNA_intron_boundary i_start="112714" i_stop="112210" i_length="505"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112209" e_stop="112075" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.806">
            <gDNA_intron_boundary i_start="112074" i_stop="111978" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111977" e_stop="111804" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111803" i_stop="111661" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="111660" e_stop="111369" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112932" stop="112715"/>
              <exon start="112209" stop="112075"/>
              <exon start="111977" stop="111804"/>
              <exon start="111660" stop="111523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112779" stop="112715"/>
              <exon start="112209" stop="112075"/>
              <exon start="111977" stop="111804"/>
              <exon start="111660" stop="111369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112779" stop="112715"/>
              <exon start="112209" stop="112075"/>
              <exon start="111977" stop="111804"/>
              <exon start="111660" stop="111639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112778" stop="112715"/>
              <exon start="112209" stop="112075"/>
              <exon start="111977" stop="111804"/>
              <exon start="111660" stop="111369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAAGCAAACAAATTAAAGAGGGGATATTGATATGAGAGAAGAGCTCCTCTCTTATTAGTTATTACATACTTTATTTAAAGAGACTTAGCTTTAGAGCTTGAGGAAGAGAAAAACATTAAATCTCACAACAATATAATGGTATCAAGGGAGCAGAAAAGAGCCTCAGTATTGCATGACAAATTGCAACTTCTTCGATCAATCACTAAATCTCATGCT : CTTAGTGAAAGCTCAATCATTGTAGATGCATCAAAATATATTCAAGAACTCAAACACAAAGTGGAAAGGCTAAATCAAGACATAACTACTACTACCCCTCAAACTAATTCAAACAACAACACTTCTTCATGGCCA : CAAATTGAAGTGGAAACCCTAGAAAAAGGTTTCTTAGTAAATGTATATTCAGAAAGAAGTTGCCCTGGTTTGCTTGTTTCCATATTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTTTCTTGCACCGACACCTTTCGTTTACAAGCATTTGGTGGAGAG : GATGAAGAAACCATGATTAATGCCCAAGTGGTGACAGAGGCAGTTTTTGAAGCTATTAAGAACTGGAGTGAAAGCAAAGAACAAGGCTAATTAATCAAATATATAATATAGTTTAATTAGCTATTATTAATTATTACTATATTCACTCTTTCGTTTTTCTCTTTAATTTTAACTTTCCCGATCATCTTCCTAGCTAGCTATGATAGTTATATTAATTATCGATAAGATTATTGGCTAGTTCATTAATATCAATATTAATGATCAAAGATCATTCATTTTGCCCAGGATTCTA</gDNA_template>
            <first_frame> W  K  Q  T  N  *  R  G  D  I  D  M  R  E  E  L  L  S  Y  *  L  L  H  T  L  F  K  E  T  *  L  *  S  L  R  K  R  K  T  L  N  L  T  T  I  *  W  Y  Q  G  S  R  K  E  P  Q  Y  C  M  T  N  C  N  F  F  D  Q  S  L  N  L  M  L :   L  V  K  A  Q  S  L  *  M  H  Q  N  I  F  K  N  S  N  T  K  W  K  G  *  I  K  T  *  L  L  L  P  L  K  L  I  Q  T  T  T  L  L  H  G  H :   K  L  K  W  K  P  *  K  K  V  S  *  *  M  Y  I  Q  K  E  V  A  L  V  C  L  F  P  Y  Y  K  F  L  K  T  L  A  L  T  Y  L  K  L  G  F  L  A  P  T  P  F  V  Y  K  H  L  V  E  R :   M  K  K  P  *  L  M  P  K  W  *  Q  R  Q  F  L  K  L  L  R  T  G  V  K  A  K  N  K  A  N  *  S  N  I  *  Y  S  L  I  S  Y  Y  *  L  L  L  Y  S  L  F  R  F  S  L  *  F  *  L  S  R  S  S  S  *  L  A  M  I  V  I  L  I  I  D  K  I  I  G  *  F  I  N  I  N  I  N  D  Q  R  S  F  I  L  P  R  I  L </first_frame>
            <second_frame>  G  S  K  Q  I  K  E  G  I  L  I  *  E  K  S  S  S  L  I  S  Y  Y  I  L  Y  L  K  R  L  S  F  R  A  *  G  R  E  K  H  *  I  S  Q  Q  Y  N  G  I  K  G  A  E  K  S  L  S  I  A  *  Q  I  A  T  S  S  I  N  H  *  I  S  C   : S  *  *  K  L  N  H  C  R  C  I  K  I  Y  S  R  T  Q  T  Q  S  G  K  A  K  S  R  H  N  Y  Y  Y  P  S  N  *  F  K  Q  Q  H  F  F  M  A   : T  N  *  S  G  N  P  R  K  R  F  L  S  K  C  I  F  R  K  K  L  P  W  F  A  C  F  H  I  T  S  S  *  R  P  W  P  *  R  T  *  S  *  G  F  L  H  R  H  L  S  F  T  S  I  W  W  R   : G  *  R  N  H  D  *  C  P  S  G  D  R  G  S  F  *  S  Y  *  E  L  E  *  K  Q  R  T  R  L  I  N  Q  I  Y  N  I  V  *  L  A  I  I  N  Y  Y  Y  I  H  S  F  V  F  L  F  N  F  N  F  P  D  H  L  P  S  *  L  *  *  L  Y  *  L  S  I  R  L  L  A  S  S  L  I  S  I  L  M  I  K  D  H  S  F  C  P  G  F   </second_frame>
            <third_frame>   E  A  N  K  L  K  R  G  Y  *  Y  E  R  R  A  P  L  L  L  V  I  T  Y  F  I  *  R  D  L  A  L  E  L  E  E  E  K  N  I  K  S  H  N  N  I  M  V  S  R  E  Q  K  R  A  S  V  L  H  D  K  L  Q  L  L  R  S  I  T  K  S  H  A  :  L  S  E  S  S  I  I  V  D  A  S  K  Y  I  Q  E  L  K  H  K  V  E  R  L  N  Q  D  I  T  T  T  T  P  Q  T  N  S  N  N  N  T  S  S  W  P  :  Q  I  E  V  E  T  L  E  K  G  F  L  V  N  V  Y  S  E  R  S  C  P  G  L  L  V  S  I  L  Q  V  L  E  D  L  G  L  N  V  L  E  A  R  V  S  C  T  D  T  F  R  L  Q  A  F  G  G  E  :  D  E  E  T  M  I  N  A  Q  V  V  T  E  A  V  F  E  A  I  K  N  W  S  E  S  K  E  Q  G  *  L  I  K  Y  I  I  *  F  N  *  L  L  L  I  I  T  I  F  T  L  S  F  F  S  L  I  L  T  F  P  I  I  F  L  A  S  Y  D  S  Y  I  N  Y  R  *  D  Y  W  L  V  H  *  Y  Q  Y  *  *  S  K  I  I  H  F  A  Q  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0082G10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112852" stop="112715"/>
                    <exon start="112209" stop="112075"/>
                    <exon start="111977" stop="111804"/>
                    <exon start="111660" stop="111571"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDLALELEEEKNIKSHNNIMVSREQKRASVLHDKLQLLRSITKSHALSESSIIVDASKYIQELKHKVERLNQDITTTTPQTNSNNNTSSWPQIEVETLEKGFLVNVYSERSCPGLLVSILQVLEDLGLNVLEARVSCTDTFRLQAFGGEDEETMINAQVVTEAVFEAIKNWSESKEQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 104 chains have been computed
$ 
$ memory statistics:
$ 66704 bytes spliced alignments in total
$ 26 spliced alignments have been stored
$ 2565 bytes was the average size of a spliced alignment
$ 16456 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1645 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 122 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:47:12
-->
